Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050528.t1 | XP_003626454.1 | 97 | 363 | 10 | 1 | 1 | 363 | 28 | 389 | 4.80E-166 | 594 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050528.t1 | Q99090 | 52.7 | 376 | 146 | 10 | 1 | 358 | 28 | 389 | 1.8e-81 | 304.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050528.t1 | G7L1X5 | 97.0 | 363 | 10 | 1 | 1 | 363 | 28 | 389 | 3.5e-166 | 594.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050528.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049678 | MS.gene050528 | 0.837303 | 5.63E-57 | -1.69E-46 |
| MS.gene05031 | MS.gene050528 | 0.84291 | 1.94E-58 | -1.69E-46 |
| MS.gene050463 | MS.gene050528 | 0.997399 | 7.56E-242 | -1.69E-46 |
| MS.gene050528 | MS.gene051569 | 0.8392 | 1.83E-57 | -1.69E-46 |
| MS.gene050528 | MS.gene051946 | 0.81979 | 9.65E-53 | -1.69E-46 |
| MS.gene050528 | MS.gene052566 | 0.818397 | 2.00E-52 | -1.69E-46 |
| MS.gene050528 | MS.gene057014 | 0.822282 | 2.57E-53 | -1.69E-46 |
| MS.gene050528 | MS.gene05884 | 0.821312 | 4.32E-53 | -1.69E-46 |
| MS.gene050528 | MS.gene061582 | 0.845969 | 2.92E-59 | -1.69E-46 |
| MS.gene050528 | MS.gene063557 | 0.825789 | 3.87E-54 | -1.69E-46 |
| MS.gene050528 | MS.gene063558 | 0.822429 | 2.38E-53 | -1.69E-46 |
| MS.gene050528 | MS.gene071900 | -0.800891 | 1.16E-48 | -1.69E-46 |
| MS.gene050528 | MS.gene071901 | -0.805889 | 1.07E-49 | -1.69E-46 |
| MS.gene050528 | MS.gene072181 | 0.809309 | 2.02E-50 | -1.69E-46 |
| MS.gene050528 | MS.gene08865 | 0.873514 | 1.39E-67 | -1.69E-46 |
| MS.gene050528 | MS.gene09018 | 0.854316 | 1.34E-61 | -1.69E-46 |
| MS.gene050528 | MS.gene09227 | 0.860466 | 2.03E-63 | -1.69E-46 |
| MS.gene050528 | MS.gene29069 | 0.831595 | 1.53E-55 | -1.69E-46 |
| MS.gene050528 | MS.gene32215 | 0.806322 | 8.70E-50 | -1.69E-46 |
| MS.gene050528 | MS.gene33033 | 0.840392 | 8.94E-58 | -1.69E-46 |
| MS.gene050528 | MS.gene39118 | 0.81288 | 3.39E-51 | -1.69E-46 |
| MS.gene050528 | MS.gene62835 | 0.816478 | 5.42E-52 | -1.69E-46 |
| MS.gene050528 | MS.gene67601 | 0.821606 | 3.69E-53 | -1.69E-46 |
| MS.gene050528 | MS.gene70706 | 0.865553 | 5.43E-65 | -1.69E-46 |
| MS.gene050528 | MS.gene72286 | 0.815193 | 1.05E-51 | -1.69E-46 |
| MS.gene050528 | MS.gene76146 | 0.80763 | 4.60E-50 | -1.69E-46 |
| MS.gene050528 | MS.gene85220 | 0.823411 | 1.41E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050528.t1 | MTR_7g115120 | 97.521 | 363 | 8 | 1 | 1 | 363 | 28 | 389 | 0.0 | 717 |
| MS.gene050528.t1 | MTR_1g080920 | 58.824 | 374 | 134 | 9 | 1 | 359 | 32 | 400 | 9.78e-125 | 365 |
| MS.gene050528.t1 | MTR_7g115140 | 58.960 | 173 | 49 | 5 | 71 | 240 | 53 | 206 | 4.71e-54 | 177 |
| MS.gene050528.t1 | MTR_3g109310 | 52.899 | 138 | 58 | 3 | 123 | 253 | 76 | 213 | 3.09e-31 | 120 |
| MS.gene050528.t1 | MTR_1g008990 | 58.333 | 120 | 45 | 2 | 142 | 258 | 142 | 259 | 2.10e-25 | 105 |
| MS.gene050528.t1 | MTR_1g008990 | 54.622 | 119 | 46 | 2 | 142 | 257 | 142 | 255 | 7.62e-22 | 94.0 |
| MS.gene050528.t1 | MTR_4g070860 | 40.000 | 115 | 59 | 1 | 145 | 259 | 17 | 121 | 3.22e-16 | 75.5 |
| MS.gene050528.t1 | MTR_3g110010 | 56.410 | 78 | 34 | 0 | 172 | 249 | 633 | 710 | 2.75e-15 | 77.8 |
| MS.gene050528.t1 | MTR_3g109982 | 56.579 | 76 | 33 | 0 | 174 | 249 | 651 | 726 | 5.15e-15 | 77.0 |
| MS.gene050528.t1 | MTR_3g117120 | 39.785 | 93 | 56 | 0 | 165 | 257 | 27 | 119 | 1.14e-14 | 71.2 |
| MS.gene050528.t1 | MTR_8g015250 | 40.816 | 98 | 53 | 1 | 143 | 240 | 54 | 146 | 5.57e-14 | 70.1 |
| MS.gene050528.t1 | MTR_7g029400 | 40.816 | 98 | 53 | 1 | 143 | 240 | 64 | 156 | 9.21e-14 | 69.7 |
| MS.gene050528.t1 | MTR_8g086020 | 35.238 | 105 | 68 | 0 | 153 | 257 | 20 | 124 | 9.52e-14 | 68.9 |
| MS.gene050528.t1 | MTR_6g016375 | 47.297 | 74 | 39 | 0 | 168 | 241 | 90 | 163 | 6.08e-13 | 67.4 |
| MS.gene050528.t1 | MTR_1g022495 | 29.747 | 158 | 88 | 3 | 137 | 281 | 9 | 156 | 2.23e-12 | 65.1 |
| MS.gene050528.t1 | MTR_7g017880 | 42.857 | 91 | 44 | 1 | 150 | 240 | 77 | 159 | 3.15e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050528.t1 | AT5G28770 | 46.667 | 360 | 114 | 11 | 1 | 356 | 24 | 309 | 3.04e-70 | 223 |
| MS.gene050528.t1 | AT5G28770 | 46.348 | 356 | 114 | 11 | 1 | 356 | 24 | 302 | 4.27e-66 | 211 |
| MS.gene050528.t1 | AT5G28770 | 50.204 | 245 | 76 | 7 | 1 | 241 | 24 | 226 | 8.19e-52 | 173 |
| MS.gene050528.t1 | AT4G02640 | 46.977 | 215 | 88 | 4 | 54 | 257 | 113 | 312 | 2.78e-37 | 139 |
| MS.gene050528.t1 | AT4G02640 | 46.977 | 215 | 88 | 4 | 54 | 257 | 113 | 312 | 4.55e-37 | 138 |
| MS.gene050528.t1 | AT4G02640 | 46.411 | 209 | 92 | 3 | 54 | 257 | 113 | 306 | 9.61e-37 | 137 |
| MS.gene050528.t1 | AT4G02640 | 46.411 | 209 | 92 | 3 | 54 | 257 | 113 | 306 | 1.57e-36 | 137 |
| MS.gene050528.t1 | AT3G54620 | 36.443 | 343 | 140 | 13 | 1 | 297 | 40 | 350 | 3.45e-36 | 135 |
| MS.gene050528.t1 | AT5G24800 | 55.814 | 129 | 47 | 4 | 130 | 249 | 76 | 203 | 4.66e-35 | 130 |
| MS.gene050528.t1 | AT5G28770 | 45.631 | 206 | 66 | 7 | 1 | 202 | 24 | 187 | 3.32e-29 | 113 |
| MS.gene050528.t1 | AT3G54620 | 34.694 | 343 | 129 | 15 | 1 | 297 | 40 | 333 | 7.15e-24 | 101 |
| MS.gene050528.t1 | AT3G30530 | 39.796 | 98 | 56 | 1 | 143 | 240 | 59 | 153 | 3.90e-13 | 67.4 |
| MS.gene050528.t1 | AT2G04038 | 50.667 | 75 | 37 | 0 | 166 | 240 | 72 | 146 | 6.89e-13 | 66.6 |
| MS.gene050528.t1 | AT1G75390 | 37.963 | 108 | 62 | 1 | 166 | 273 | 39 | 141 | 8.65e-13 | 66.6 |
| MS.gene050528.t1 | AT2G18160 | 39.759 | 83 | 50 | 0 | 165 | 247 | 28 | 110 | 1.56e-12 | 65.9 |
| MS.gene050528.t1 | AT1G13600 | 38.776 | 98 | 54 | 1 | 143 | 240 | 67 | 158 | 1.52e-11 | 63.5 |
| MS.gene050528.t1 | AT5G15830 | 45.545 | 101 | 44 | 4 | 142 | 240 | 55 | 146 | 7.90e-11 | 61.2 |
Find 75 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCTTCCCGATCTATTAT+TGG | 0.211521 | 7.4:+2438577 | None:intergenic |
| CTTTCAGGATGCTCTCTAAT+AGG | 0.224164 | 7.4:-2439468 | MS.gene050528:intron |
| TATGTAGAATGCGGCCCTTC+TGG | 0.245369 | 7.4:-2440024 | MS.gene050528:intron |
| TATTGATTCTGAGGATTATC+AGG | 0.285549 | 7.4:-2441081 | MS.gene050528:CDS |
| ATTGTAACAGCAGGTTTCTT+TGG | 0.288769 | 7.4:+2439940 | None:intergenic |
| GAGACAGTTAAAAGATTTAC+TGG | 0.291659 | 7.4:-2438776 | MS.gene050528:CDS |
| CTCATGGCAATAGGGATCTT+TGG | 0.348357 | 7.4:-2440255 | MS.gene050528:intron |
| CCATCTTATCCTTCTGAACT+TGG | 0.355060 | 7.4:-2440200 | MS.gene050528:CDS |
| CCTGCCACGGGTGGCTAGCT+TGG | 0.382757 | 7.4:-2438486 | MS.gene050528:CDS |
| AAGATATCAAAGTTGCTGTT+GGG | 0.385646 | 7.4:-2439975 | MS.gene050528:CDS |
| GACATTAGATTATTAGATAA+GGG | 0.396715 | 7.4:+2438620 | None:intergenic |
| TTTCAGGATGCTCTCTAATA+GGG | 0.402739 | 7.4:-2439467 | MS.gene050528:intron |
| TCCTTCTGAACTTGGACCTC+TGG | 0.404582 | 7.4:-2440192 | MS.gene050528:CDS |
| ATTCTATCACTTGTCTTCTT+CGG | 0.406886 | 7.4:+2438433 | None:intergenic |
| TATTAGGTCTCTGAATTAAG+AGG | 0.422615 | 7.4:-2439277 | MS.gene050528:intron |
| CCAAGCTAGCCACCCGTGGC+AGG | 0.428000 | 7.4:+2438486 | None:intergenic |
| GTTGAAGTTGAAGATGAAGA+AGG | 0.442163 | 7.4:+2441152 | None:intergenic |
| GCAGCAGGTGGGAACAAGAT+AGG | 0.452428 | 7.4:-2438521 | MS.gene050528:CDS |
| ATGGGAATGTCATTATTTGA+TGG | 0.455802 | 7.4:-2438713 | MS.gene050528:CDS |
| GAGATACAACAAAGATGAAT+CGG | 0.458250 | 7.4:-2441253 | None:intergenic |
| GATGGCTGTGATCCATTGTC+AGG | 0.464580 | 7.4:+2440218 | None:intergenic |
| GGGATCTTTGGTCAAATCTC+AGG | 0.465850 | 7.4:-2440243 | MS.gene050528:CDS |
| GGACATTAGATTATTAGATA+AGG | 0.466925 | 7.4:+2438619 | None:intergenic |
| AAAGATATCAAAGTTGCTGT+TGG | 0.482051 | 7.4:-2439976 | MS.gene050528:CDS |
| GAGGGAGAGATTAATATGAA+TGG | 0.483459 | 7.4:-2439877 | MS.gene050528:CDS |
| GGACCTCTGGCTACTTTGAA+AGG | 0.489971 | 7.4:-2440179 | MS.gene050528:intron |
| AATGTCTGAGGTATCATCAA+TGG | 0.491343 | 7.4:-2438732 | MS.gene050528:CDS |
| GGCGCAAGCAAGATCAAGCT+TGG | 0.492090 | 7.4:+2441046 | None:intergenic |
| GCAGGTTTCTTTGGCATGCA+AGG | 0.507308 | 7.4:+2439949 | None:intergenic |
| ATGTCTGAGGTATCATCAAT+GGG | 0.509553 | 7.4:-2438731 | MS.gene050528:CDS |
| TTATTTGGATCTTCTTGCAC+AGG | 0.510884 | 7.4:+2438656 | None:intergenic |
| AGAGGAGCCAATAATAGATC+GGG | 0.512572 | 7.4:-2438584 | MS.gene050528:CDS |
| CAGAAGAACACCGCAGCAGG+TGG | 0.514294 | 7.4:-2438533 | MS.gene050528:CDS |
| GCGCCGCCGTCGCTAAGTCG+AGG | 0.516197 | 7.4:-2441028 | MS.gene050528:CDS |
| CGCCGCCGTCGCTAAGTCGA+GGG | 0.517985 | 7.4:-2441027 | MS.gene050528:intron |
| GAGAGGAGCCAATAATAGAT+CGG | 0.524926 | 7.4:-2438585 | MS.gene050528:CDS |
| GAATCGGAGTGATTCAGAAT+GGG | 0.529997 | 7.4:-2441237 | MS.gene050528:CDS |
| GGCTCCTCTCATATCATGAC+TGG | 0.535600 | 7.4:+2438598 | None:intergenic |
| GTGCAGAAGAACACCGCAGC+AGG | 0.536590 | 7.4:-2438536 | MS.gene050528:CDS |
| CCAAGTTCAGAAGGATAAGA+TGG | 0.536978 | 7.4:+2440200 | None:intergenic |
| CAATAATAGTATTGATTCTG+AGG | 0.537078 | 7.4:-2441090 | MS.gene050528:CDS |
| AGATATCAAAGTTGCTGTTG+GGG | 0.538293 | 7.4:-2439974 | MS.gene050528:CDS |
| ACAATCAAGTCAACAACAAG+TGG | 0.544242 | 7.4:-2439922 | MS.gene050528:CDS |
| TGAATCGGAGTGATTCAGAA+TGG | 0.545437 | 7.4:-2441238 | MS.gene050528:CDS |
| GCCAGAGGTCCAAGTTCAGA+AGG | 0.550767 | 7.4:+2440191 | None:intergenic |
| CATCTTCAGAGTCGAATTCG+TGG | 0.551475 | 7.4:-2438461 | MS.gene050528:CDS |
| AACAAATTCCCTGCCACGGG+TGG | 0.555330 | 7.4:-2438495 | MS.gene050528:CDS |
| AAGATTTACTGGATCGAACC+CGG | 0.558877 | 7.4:-2438765 | MS.gene050528:CDS |
| CAAGCTAGCCACCCGTGGCA+GGG | 0.562427 | 7.4:+2438487 | None:intergenic |
| TCTTCGTCTTGAGCGTCTAG+CGG | 0.573008 | 7.4:+2439441 | None:intergenic |
| CAGACATTGCATTAAACACC+GGG | 0.574406 | 7.4:+2438747 | None:intergenic |
| TAGATGGATCGTTTCCAGAA+GGG | 0.575636 | 7.4:+2440010 | None:intergenic |
| ATCAGACGATGAGGAAGCTG+AGG | 0.576946 | 7.4:-2439896 | MS.gene050528:CDS |
| TTTAACTGAGCTTGAAACAC+AGG | 0.587276 | 7.4:-2439407 | MS.gene050528:intron |
| GTTGACTTGATTGTAACAGC+AGG | 0.587759 | 7.4:+2439931 | None:intergenic |
| ACGAACAAATTCCCTGCCAC+GGG | 0.590000 | 7.4:-2438498 | MS.gene050528:CDS |
| TTAGATGGATCGTTTCCAGA+AGG | 0.592645 | 7.4:+2440009 | None:intergenic |
| TCAGACATTGCATTAAACAC+CGG | 0.598502 | 7.4:+2438746 | None:intergenic |
| AAATCTCAGGATCCTGACAA+TGG | 0.601386 | 7.4:-2440230 | MS.gene050528:CDS |
| GACGAACAAATTCCCTGCCA+CGG | 0.607260 | 7.4:-2438499 | MS.gene050528:CDS |
| TGTTGAAACATTAAGAGCAA+AGG | 0.611502 | 7.4:-2439167 | MS.gene050528:intron |
| TATCTTGTTCCCACCTGCTG+CGG | 0.616019 | 7.4:+2438523 | None:intergenic |
| GCATCAGCTGATGACTCAGA+AGG | 0.620005 | 7.4:+2438686 | None:intergenic |
| CTGATGCAAAACGAGTAAGA+AGG | 0.628581 | 7.4:-2439843 | MS.gene050528:intron |
| TTTGAGATTGACATCAACGG+TGG | 0.645017 | 7.4:+2441115 | None:intergenic |
| TCAGACGATGAGGAAGCTGA+GGG | 0.659901 | 7.4:-2439895 | MS.gene050528:CDS |
| ATGTCCAGTCATGATATGAG+AGG | 0.664118 | 7.4:-2438602 | MS.gene050528:CDS |
| GGTGTTTAATGCAATGTCTG+AGG | 0.664829 | 7.4:-2438744 | MS.gene050528:CDS |
| AGAAGAACACCGCAGCAGGT+GGG | 0.666761 | 7.4:-2438532 | MS.gene050528:CDS |
| AAGTGGATCATCAGACGATG+AGG | 0.668470 | 7.4:-2439905 | MS.gene050528:CDS |
| TGTTCCAAGCTAGCCACCCG+TGG | 0.670248 | 7.4:+2438482 | None:intergenic |
| TACCCTCGACTTAGCGACGG+CGG | 0.681240 | 7.4:+2441025 | None:intergenic |
| AAACCTTTCAAAGTAGCCAG+AGG | 0.696494 | 7.4:+2440176 | None:intergenic |
| ATATACCCTCGACTTAGCGA+CGG | 0.708838 | 7.4:+2441022 | None:intergenic |
| CTTCAGAGTCGAATTCGTGG+TGG | 0.718456 | 7.4:-2438458 | MS.gene050528:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAATTGCA+TGG | + | chr7.4:2438719-2438738 | None:intergenic | 10.0% |
| !! | ATATAATATTCTATCTTATT+AGG | - | chr7.4:2440385-2440404 | MS.gene050528:intron | 10.0% |
| !! | AAAAATGAGAACAATATAAA+GGG | + | chr7.4:2440864-2440883 | None:intergenic | 15.0% |
| !! | ATAGTAAATTAAATTGTATC+AGG | + | chr7.4:2438755-2438774 | None:intergenic | 15.0% |
| !! | TAAAAATGAGAACAATATAA+AGG | + | chr7.4:2440865-2440884 | None:intergenic | 15.0% |
| !! | TAGTAAATTAAATTGTATCA+GGG | + | chr7.4:2438754-2438773 | None:intergenic | 15.0% |
| !! | TGTATAAAATACTTAATTCA+GGG | + | chr7.4:2440162-2440181 | None:intergenic | 15.0% |
| !! | TTGTATAAAATACTTAATTC+AGG | + | chr7.4:2440163-2440182 | None:intergenic | 15.0% |
| !!! | ATAAGTTATTTCTATAATCA+AGG | + | chr7.4:2440102-2440121 | None:intergenic | 15.0% |
| !!! | TATATAGCTTTTGAATATTA+CGG | + | chr7.4:2438892-2438911 | None:intergenic | 15.0% |
| !!! | TCTTTATTTTGTAATTTAGA+TGG | + | chr7.4:2439687-2439706 | None:intergenic | 15.0% |
| !!! | TTATATTGTTCTCATTTTTA+AGG | - | chr7.4:2440865-2440884 | MS.gene050528:intron | 15.0% |
| !! | AAACTATAATAGAGATTTCA+CGG | + | chr7.4:2440031-2440050 | None:intergenic | 20.0% |
| !! | GACATTAGATTATTAGATAA+GGG | + | chr7.4:2441061-2441080 | None:intergenic | 20.0% |
| !! | TTAATTCTGTCAACATATAT+GGG | + | chr7.4:2439056-2439075 | None:intergenic | 20.0% |
| !! | TTTAATTCTGTCAACATATA+TGG | + | chr7.4:2439057-2439076 | None:intergenic | 20.0% |
| !!! | ACTATATATTTTTTTGTGTG+TGG | - | chr7.4:2438770-2438789 | MS.gene050528:CDS | 20.0% |
| !!! | AGTAGATCACAATTTTTTAA+GGG | - | chr7.4:2439604-2439623 | MS.gene050528:intron | 20.0% |
| !!! | TAGTAGATCACAATTTTTTA+AGG | - | chr7.4:2439603-2439622 | MS.gene050528:intron | 20.0% |
| !!! | TTTTATTCATATGTAGAATG+CGG | - | chr7.4:2439645-2439664 | MS.gene050528:intron | 20.0% |
| ! | AAACATGGTAAATACATTGA+AGG | - | chr7.4:2439575-2439594 | MS.gene050528:intron | 25.0% |
| ! | AACACTTGAGAAATTATTTG+AGG | - | chr7.4:2439958-2439977 | MS.gene050528:CDS | 25.0% |
| ! | AACTACTTTACTAGTAAAAC+TGG | - | chr7.4:2440548-2440567 | MS.gene050528:intron | 25.0% |
| ! | AACTATAATAGAGATTTCAC+GGG | + | chr7.4:2440030-2440049 | None:intergenic | 25.0% |
| ! | ACACATAAATCAATTGGAAA+TGG | + | chr7.4:2440811-2440830 | None:intergenic | 25.0% |
| ! | ACACTTGAGAAATTATTTGA+GGG | - | chr7.4:2439959-2439978 | MS.gene050528:CDS | 25.0% |
| ! | ATTTGAACGACTAATTAAGA+TGG | + | chr7.4:2440355-2440374 | None:intergenic | 25.0% |
| ! | GGACATTAGATTATTAGATA+AGG | + | chr7.4:2441062-2441081 | None:intergenic | 25.0% |
| ! | GGTTGAAAAAAGTGATTATT+TGG | + | chr7.4:2441040-2441059 | None:intergenic | 25.0% |
| ! | TCAAATTAGTCAATCTAAAC+AGG | + | chr7.4:2439921-2439940 | None:intergenic | 25.0% |
| !! | AGCAGAATTGTTGAATTTTT+GGG | + | chr7.4:2440465-2440484 | None:intergenic | 25.0% |
| !! | TCCAATTGATTTATGTGTAT+TGG | - | chr7.4:2440813-2440832 | MS.gene050528:intron | 25.0% |
| !!! | CAATAATAGTATTGATTCTG+AGG | - | chr7.4:2438588-2438607 | MS.gene050528:CDS | 25.0% |
| !!! | TAGTTTTGATTCTTCAAAGT+TGG | - | chr7.4:2439329-2439348 | MS.gene050528:intron | 25.0% |
| AAAGATATCAAAGTTGCTGT+TGG | - | chr7.4:2439702-2439721 | MS.gene050528:intron | 30.0% | |
| ATGGGAATGTCATTATTTGA+TGG | - | chr7.4:2440965-2440984 | MS.gene050528:intron | 30.0% | |
| ATGTGACTTTGGTAAAATCA+CGG | + | chr7.4:2439006-2439025 | None:intergenic | 30.0% | |
| GAGACAGTTAAAAGATTTAC+TGG | - | chr7.4:2440902-2440921 | MS.gene050528:intron | 30.0% | |
| GCCAATACACATAAATCAAT+TGG | + | chr7.4:2440817-2440836 | None:intergenic | 30.0% | |
| GTTTATTATCGATGTGACTT+TGG | + | chr7.4:2439017-2439036 | None:intergenic | 30.0% | |
| TACGTGTATGTTTGGATATT+CGG | - | chr7.4:2438847-2438866 | MS.gene050528:intron | 30.0% | |
| TATTAGGTCTCTGAATTAAG+AGG | - | chr7.4:2440401-2440420 | MS.gene050528:intron | 30.0% | |
| TGGTAAATACATTGAAGGAA+AGG | - | chr7.4:2439580-2439599 | MS.gene050528:intron | 30.0% | |
| TGTTGAAACATTAAGAGCAA+AGG | - | chr7.4:2440511-2440530 | MS.gene050528:intron | 30.0% | |
| ! | AAGATATCAAAGTTGCTGTT+GGG | - | chr7.4:2439703-2439722 | MS.gene050528:intron | 30.0% |
| ! | ATAGCTTTTGAATATTACGG+TGG | + | chr7.4:2438889-2438908 | None:intergenic | 30.0% |
| ! | ATGTTTTCTTTTACTCCTCA+TGG | - | chr7.4:2439407-2439426 | MS.gene050528:intron | 30.0% |
| ! | CACAATTTTACGTGTATGTT+TGG | - | chr7.4:2438839-2438858 | MS.gene050528:intron | 30.0% |
| ! | CAGCAGAATTGTTGAATTTT+TGG | + | chr7.4:2440466-2440485 | None:intergenic | 30.0% |
| ! | GTGTGCATATGTTAATCTTT+TGG | + | chr7.4:2438822-2438841 | None:intergenic | 30.0% |
| ! | GTTGTTCACGTAAAAACTTT+TGG | + | chr7.4:2438471-2438490 | None:intergenic | 30.0% |
| !! | ATTAATTTGCGAAATTGGGA+TGG | - | chr7.4:2438976-2438995 | MS.gene050528:intron | 30.0% |
| !! | TATTGATTCTGAGGATTATC+AGG | - | chr7.4:2438597-2438616 | MS.gene050528:CDS | 30.0% |
| !!! | GATTTTGAGATTGACATCAA+CGG | + | chr7.4:2438569-2438588 | None:intergenic | 30.0% |
| !!! | TCTCATTTTTAAGGTGAAGA+TGG | - | chr7.4:2440874-2440893 | MS.gene050528:intron | 30.0% |
| AAACATGCACAAAATCACGA+TGG | + | chr7.4:2438943-2438962 | None:intergenic | 35.0% | |
| AAATTATTTGAGGGAGATCG+TGG | - | chr7.4:2439968-2439987 | MS.gene050528:CDS | 35.0% | |
| AAGCTTAGATGAAAACCTAG+TGG | + | chr7.4:2439200-2439219 | None:intergenic | 35.0% | |
| AATGCTTCCCGATCTATTAT+TGG | + | chr7.4:2441104-2441123 | None:intergenic | 35.0% | |
| ACAATCAAGTCAACAACAAG+TGG | - | chr7.4:2439756-2439775 | MS.gene050528:intron | 35.0% | |
| ACTAATTAACAAGCACTCCT+TGG | + | chr7.4:2439259-2439278 | None:intergenic | 35.0% | |
| AGAAGAGAATGCAGAAGAAA+TGG | + | chr7.4:2440319-2440338 | None:intergenic | 35.0% | |
| AGAATCTTGATCCAAGTAGT+AGG | + | chr7.4:2440583-2440602 | None:intergenic | 35.0% | |
| AGTTTACACAGTCAGTACAT+CGG | - | chr7.4:2440622-2440641 | MS.gene050528:intron | 35.0% | |
| ATTGTAACAGCAGGTTTCTT+TGG | + | chr7.4:2439741-2439760 | None:intergenic | 35.0% | |
| CTAATTAACAAGCACTCCTT+GGG | + | chr7.4:2439258-2439277 | None:intergenic | 35.0% | |
| GAATGCATGAATCATGCAAT+TGG | + | chr7.4:2439178-2439197 | None:intergenic | 35.0% | |
| GAGGGAGAGATTAATATGAA+TGG | - | chr7.4:2439801-2439820 | MS.gene050528:intron | 35.0% | |
| GTGACTGCTTAGATTAAGAT+CGG | - | chr7.4:2440644-2440663 | MS.gene050528:intron | 35.0% | |
| GTGCATGTTTGATATTACAG+CGG | - | chr7.4:2438953-2438972 | MS.gene050528:intron | 35.0% | |
| GTTGAAGTTGAAGATGAAGA+AGG | + | chr7.4:2438529-2438548 | None:intergenic | 35.0% | |
| TCAGACATTGCATTAAACAC+CGG | + | chr7.4:2440935-2440954 | None:intergenic | 35.0% | |
| TCCAAACAATTATCAACCCA+AGG | - | chr7.4:2439239-2439258 | MS.gene050528:CDS | 35.0% | |
| TGGATATTCGGTCAAAATCA+CGG | - | chr7.4:2438859-2438878 | MS.gene050528:intron | 35.0% | |
| TGTCTGCATATGTGAAAACA+TGG | - | chr7.4:2439560-2439579 | MS.gene050528:intron | 35.0% | |
| TTATTTGGATCTTCTTGCAC+AGG | + | chr7.4:2441025-2441044 | None:intergenic | 35.0% | |
| TTTAACTGAGCTTGAAACAC+AGG | - | chr7.4:2440271-2440290 | MS.gene050528:intron | 35.0% | |
| TTTCAGGATGCTCTCTAATA+GGG | - | chr7.4:2440211-2440230 | MS.gene050528:CDS | 35.0% | |
| ! | AATGTCTGAGGTATCATCAA+TGG | - | chr7.4:2440946-2440965 | MS.gene050528:intron | 35.0% |
| ! | AATTGGAAATGGATTCCTTC+TGG | + | chr7.4:2440800-2440819 | None:intergenic | 35.0% |
| ! | AGATATCAAAGTTGCTGTTG+GGG | - | chr7.4:2439704-2439723 | MS.gene050528:intron | 35.0% |
| ! | ATGTCTGAGGTATCATCAAT+GGG | - | chr7.4:2440947-2440966 | MS.gene050528:intron | 35.0% |
| ! | GTTTTGCACAAGAAATCTTC+TGG | - | chr7.4:2439868-2439887 | MS.gene050528:CDS | 35.0% |
| ! | TTACTCGTTTTGCATCAGTA+GGG | + | chr7.4:2439833-2439852 | None:intergenic | 35.0% |
| ! | TTTTACTCCTCATGGCAATA+GGG | - | chr7.4:2439415-2439434 | MS.gene050528:CDS | 35.0% |
| !! | AGCGGATTAATTTGCGAAAT+TGG | - | chr7.4:2438971-2438990 | MS.gene050528:intron | 35.0% |
| !! | GCGGATTAATTTGCGAAATT+GGG | - | chr7.4:2438972-2438991 | MS.gene050528:intron | 35.0% |
| !! | TCCTTGGGTTGATAATTGTT+TGG | + | chr7.4:2439243-2439262 | None:intergenic | 35.0% |
| AAACCTTTCAAAGTAGCCAG+AGG | + | chr7.4:2439505-2439524 | None:intergenic | 40.0% | |
| AAATCTCAGGATCCTGACAA+TGG | - | chr7.4:2439448-2439467 | MS.gene050528:CDS | 40.0% | |
| AAGATTTACTGGATCGAACC+CGG | - | chr7.4:2440913-2440932 | MS.gene050528:intron | 40.0% | |
| AGACACTAGCACTTGTTCTA+AGG | + | chr7.4:2439103-2439122 | None:intergenic | 40.0% | |
| AGAGGAGCCAATAATAGATC+GGG | - | chr7.4:2441094-2441113 | MS.gene050528:CDS | 40.0% | |
| ATGTCCAGTCATGATATGAG+AGG | - | chr7.4:2441076-2441095 | MS.gene050528:CDS | 40.0% | |
| CAGACATTGCATTAAACACC+GGG | + | chr7.4:2440934-2440953 | None:intergenic | 40.0% | |
| CATGATTCATGCATTCCACT+AGG | - | chr7.4:2439182-2439201 | MS.gene050528:CDS | 40.0% | |
| CCAAGTTCAGAAGGATAAGA+TGG | + | chr7.4:2439481-2439500 | None:intergenic | 40.0% | |
| CCATCTTATCCTTCTGAACT+TGG | - | chr7.4:2439478-2439497 | MS.gene050528:intron | 40.0% | |
| CTGATGCAAAACGAGTAAGA+AGG | - | chr7.4:2439835-2439854 | MS.gene050528:intron | 40.0% | |
| CTTTCAGGATGCTCTCTAAT+AGG | - | chr7.4:2440210-2440229 | MS.gene050528:CDS | 40.0% | |
| GAATCGGAGTGATTCAGAAT+GGG | - | chr7.4:2438441-2438460 | MS.gene050528:CDS | 40.0% | |
| GAGAGGAGCCAATAATAGAT+CGG | - | chr7.4:2441093-2441112 | MS.gene050528:CDS | 40.0% | |
| GGTGTTTAATGCAATGTCTG+AGG | - | chr7.4:2440934-2440953 | MS.gene050528:intron | 40.0% | |
| GGTTACTACTGGATTCAGAT+TGG | + | chr7.4:2440743-2440762 | None:intergenic | 40.0% | |
| GGTTATAGAAGCCTACTACT+TGG | - | chr7.4:2440569-2440588 | MS.gene050528:intron | 40.0% | |
| TAGATGGATCGTTTCCAGAA+GGG | + | chr7.4:2439671-2439690 | None:intergenic | 40.0% | |
| TGAATCGGAGTGATTCAGAA+TGG | - | chr7.4:2438440-2438459 | MS.gene050528:CDS | 40.0% | |
| TTAGATGGATCGTTTCCAGA+AGG | + | chr7.4:2439672-2439691 | None:intergenic | 40.0% | |
| ! | CTTACTCGTTTTGCATCAGT+AGG | + | chr7.4:2439834-2439853 | None:intergenic | 40.0% |
| ! | CTTTTACTCCTCATGGCAAT+AGG | - | chr7.4:2439414-2439433 | MS.gene050528:CDS | 40.0% |
| ! | GATTCCTTCTGGTTGGAATA+TGG | + | chr7.4:2440789-2440808 | None:intergenic | 40.0% |
| ! | TTTGAGATTGACATCAACGG+TGG | + | chr7.4:2438566-2438585 | None:intergenic | 40.0% |
| !! | ACTAGCACTTGTTCTAAGGT+AGG | + | chr7.4:2439099-2439118 | None:intergenic | 40.0% |
| !! | ACTTGTTCTAAGGTAGGAGA+AGG | + | chr7.4:2439093-2439112 | None:intergenic | 40.0% |
| !! | CTATTAGAGAGCATCCTGAA+AGG | + | chr7.4:2440212-2440231 | None:intergenic | 40.0% |
| !! | GTACTGACTGTGTAAACTCA+AGG | + | chr7.4:2440620-2440639 | None:intergenic | 40.0% |
| !! | GTTGACTTGATTGTAACAGC+AGG | + | chr7.4:2439750-2439769 | None:intergenic | 40.0% |
| AAGTGGATCATCAGACGATG+AGG | - | chr7.4:2439773-2439792 | MS.gene050528:intron | 45.0% | |
| AGGCAATGTCATCAGGCATT+AGG | + | chr7.4:2440192-2440211 | None:intergenic | 45.0% | |
| ATATACCCTCGACTTAGCGA+CGG | + | chr7.4:2438659-2438678 | None:intergenic | 45.0% | |
| CAAAGATCCCTATTGCCATG+AGG | + | chr7.4:2439425-2439444 | None:intergenic | 45.0% | |
| CATCTTCAGAGTCGAATTCG+TGG | - | chr7.4:2441217-2441236 | MS.gene050528:CDS | 45.0% | |
| CTCATGGCAATAGGGATCTT+TGG | - | chr7.4:2439423-2439442 | MS.gene050528:CDS | 45.0% | |
| GGATGCTTGAGATTCAACCT+CGG | - | chr7.4:2440665-2440684 | MS.gene050528:intron | 45.0% | |
| GGGATCTTTGGTCAAATCTC+AGG | - | chr7.4:2439435-2439454 | MS.gene050528:CDS | 45.0% | |
| GTGTGGCAATCTGCTTTCAT+GGG | - | chr7.4:2438787-2438806 | MS.gene050528:CDS | 45.0% | |
| TCCTGAAAGGCAATGTCATC+AGG | + | chr7.4:2440199-2440218 | None:intergenic | 45.0% | |
| TGTGTGGCAATCTGCTTTCA+TGG | - | chr7.4:2438786-2438805 | MS.gene050528:CDS | 45.0% | |
| ! | GGAAATGGATTCCTTCTGGT+TGG | + | chr7.4:2440796-2440815 | None:intergenic | 45.0% |
| ACGAACAAATTCCCTGCCAC+GGG | - | chr7.4:2441180-2441199 | MS.gene050528:CDS | 50.0% | |
| AGTCAGGCAAGGGTTACTAC+TGG | + | chr7.4:2440754-2440773 | None:intergenic | 50.0% | |
| ATCAGACGATGAGGAAGCTG+AGG | - | chr7.4:2439782-2439801 | MS.gene050528:intron | 50.0% | |
| ATTCAACCTCGGTGGTGCTT+TGG | - | chr7.4:2440676-2440695 | MS.gene050528:intron | 50.0% | |
| CCAGCCATATTCCAACCAGA+AGG | - | chr7.4:2440782-2440801 | MS.gene050528:intron | 50.0% | |
| CTTCAGAGTCGAATTCGTGG+TGG | - | chr7.4:2441220-2441239 | MS.gene050528:CDS | 50.0% | |
| GACGAACAAATTCCCTGCCA+CGG | - | chr7.4:2441179-2441198 | MS.gene050528:CDS | 50.0% | |
| GATGGCTGTGATCCATTGTC+AGG | + | chr7.4:2439463-2439482 | None:intergenic | 50.0% | |
| GCAGGTTTCTTTGGCATGCA+AGG | + | chr7.4:2439732-2439751 | None:intergenic | 50.0% | |
| GCATCAGCTGATGACTCAGA+AGG | + | chr7.4:2440995-2441014 | None:intergenic | 50.0% | |
| GCCTGATGACATTGCCTTTC+AGG | - | chr7.4:2440195-2440214 | MS.gene050528:CDS | 50.0% | |
| GGCTCCTCTCATATCATGAC+TGG | + | chr7.4:2441083-2441102 | None:intergenic | 50.0% | |
| TATCTTGTTCCCACCTGCTG+CGG | + | chr7.4:2441158-2441177 | None:intergenic | 50.0% | |
| TATGTAGAATGCGGCCCTTC+TGG | - | chr7.4:2439654-2439673 | MS.gene050528:intron | 50.0% | |
| TCAGACGATGAGGAAGCTGA+GGG | - | chr7.4:2439783-2439802 | MS.gene050528:intron | 50.0% | |
| TCCTTCTGAACTTGGACCTC+TGG | - | chr7.4:2439486-2439505 | MS.gene050528:intron | 50.0% | |
| TCTTCGTCTTGAGCGTCTAG+CGG | + | chr7.4:2440240-2440259 | None:intergenic | 50.0% | |
| TGCTTGAGATTCAACCTCGG+TGG | - | chr7.4:2440668-2440687 | MS.gene050528:intron | 50.0% | |
| ! | CCTTCTGGTTGGAATATGGC+TGG | + | chr7.4:2440785-2440804 | None:intergenic | 50.0% |
| ! | GAAAATCCAAAGCACCACCG+AGG | + | chr7.4:2440685-2440704 | None:intergenic | 50.0% |
| ! | GGACCTCTGGCTACTTTGAA+AGG | - | chr7.4:2439499-2439518 | MS.gene050528:intron | 50.0% |
| AACAAATTCCCTGCCACGGG+TGG | - | chr7.4:2441183-2441202 | MS.gene050528:CDS | 55.0% | |
| AGAAGAACACCGCAGCAGGT+GGG | - | chr7.4:2441146-2441165 | MS.gene050528:CDS | 55.0% | |
| ATGGCTGGATTCACGCAGTC+AGG | + | chr7.4:2440770-2440789 | None:intergenic | 55.0% | |
| GCAGCAGGTGGGAACAAGAT+AGG | - | chr7.4:2441157-2441176 | MS.gene050528:CDS | 55.0% | |
| GCCAGAGGTCCAAGTTCAGA+AGG | + | chr7.4:2439490-2439509 | None:intergenic | 55.0% | |
| GGATTCACGCAGTCAGGCAA+GGG | + | chr7.4:2440764-2440783 | None:intergenic | 55.0% | |
| GGCGCAAGCAAGATCAAGCT+TGG | + | chr7.4:2438635-2438654 | None:intergenic | 55.0% | |
| TGGATTCACGCAGTCAGGCA+AGG | + | chr7.4:2440765-2440784 | None:intergenic | 55.0% | |
| CAGAAGAACACCGCAGCAGG+TGG | - | chr7.4:2441145-2441164 | MS.gene050528:CDS | 60.0% | |
| GTGCAGAAGAACACCGCAGC+AGG | - | chr7.4:2441142-2441161 | MS.gene050528:CDS | 60.0% | |
| TACCCTCGACTTAGCGACGG+CGG | + | chr7.4:2438656-2438675 | None:intergenic | 60.0% | |
| TGTTCCAAGCTAGCCACCCG+TGG | + | chr7.4:2441199-2441218 | None:intergenic | 60.0% | |
| CAAGCTAGCCACCCGTGGCA+GGG | + | chr7.4:2441194-2441213 | None:intergenic | 65.0% | |
| CCAAGCTAGCCACCCGTGGC+AGG | + | chr7.4:2441195-2441214 | None:intergenic | 70.0% | |
| CGCCGCCGTCGCTAAGTCGA+GGG | - | chr7.4:2438651-2438670 | MS.gene050528:CDS | 70.0% | |
| ! | CCTGCCACGGGTGGCTAGCT+TGG | - | chr7.4:2441192-2441211 | MS.gene050528:CDS | 70.0% |
| GCGCCGCCGTCGCTAAGTCG+AGG | - | chr7.4:2438650-2438669 | MS.gene050528:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 2438439 | 2441261 | 2438439 | ID=MS.gene050528 |
| chr7.4 | mRNA | 2438439 | 2441261 | 2438439 | ID=MS.gene050528.t1;Parent=MS.gene050528 |
| chr7.4 | exon | 2441028 | 2441261 | 2441028 | ID=MS.gene050528.t1.exon1;Parent=MS.gene050528.t1 |
| chr7.4 | CDS | 2441028 | 2441261 | 2441028 | ID=cds.MS.gene050528.t1;Parent=MS.gene050528.t1 |
| chr7.4 | exon | 2440180 | 2440264 | 2440180 | ID=MS.gene050528.t1.exon2;Parent=MS.gene050528.t1 |
| chr7.4 | CDS | 2440180 | 2440264 | 2440180 | ID=cds.MS.gene050528.t1;Parent=MS.gene050528.t1 |
| chr7.4 | exon | 2439844 | 2440039 | 2439844 | ID=MS.gene050528.t1.exon3;Parent=MS.gene050528.t1 |
| chr7.4 | CDS | 2439844 | 2440039 | 2439844 | ID=cds.MS.gene050528.t1;Parent=MS.gene050528.t1 |
| chr7.4 | exon | 2439408 | 2439483 | 2439408 | ID=MS.gene050528.t1.exon4;Parent=MS.gene050528.t1 |
| chr7.4 | CDS | 2439408 | 2439483 | 2439408 | ID=cds.MS.gene050528.t1;Parent=MS.gene050528.t1 |
| chr7.4 | exon | 2439168 | 2439293 | 2439168 | ID=MS.gene050528.t1.exon5;Parent=MS.gene050528.t1 |
| chr7.4 | CDS | 2439168 | 2439293 | 2439168 | ID=cds.MS.gene050528.t1;Parent=MS.gene050528.t1 |
| chr7.4 | exon | 2438439 | 2438813 | 2438439 | ID=MS.gene050528.t1.exon6;Parent=MS.gene050528.t1 |
| chr7.4 | CDS | 2438439 | 2438813 | 2438439 | ID=cds.MS.gene050528.t1;Parent=MS.gene050528.t1 |
| Gene Sequence |
| Protein sequence |
