Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050463.t1 | XP_003626454.1 | 96.9 | 391 | 10 | 2 | 1 | 391 | 1 | 389 | 2.60E-181 | 644.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050463.t1 | Q99090 | 51.0 | 404 | 165 | 11 | 1 | 386 | 1 | 389 | 1.3e-85 | 318.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050463.t1 | G7L1X5 | 96.9 | 391 | 10 | 2 | 1 | 391 | 1 | 389 | 1.8e-181 | 644.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050463.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049678 | MS.gene050463 | 0.833828 | 4.26E-56 | -1.69E-46 |
| MS.gene05031 | MS.gene050463 | 0.843014 | 1.82E-58 | -1.69E-46 |
| MS.gene050463 | MS.gene050528 | 0.997399 | 7.56E-242 | -1.69E-46 |
| MS.gene050463 | MS.gene051569 | 0.837386 | 5.36E-57 | -1.69E-46 |
| MS.gene050463 | MS.gene051946 | 0.822007 | 2.98E-53 | -1.69E-46 |
| MS.gene050463 | MS.gene052566 | 0.818602 | 1.80E-52 | -1.69E-46 |
| MS.gene050463 | MS.gene057014 | 0.823294 | 1.50E-53 | -1.69E-46 |
| MS.gene050463 | MS.gene05884 | 0.818772 | 1.65E-52 | -1.69E-46 |
| MS.gene050463 | MS.gene061582 | 0.841568 | 4.39E-58 | -1.69E-46 |
| MS.gene050463 | MS.gene063557 | 0.822696 | 2.06E-53 | -1.69E-46 |
| MS.gene050463 | MS.gene063558 | 0.820048 | 8.43E-53 | -1.69E-46 |
| MS.gene050463 | MS.gene071901 | -0.805841 | 1.10E-49 | -1.69E-46 |
| MS.gene050463 | MS.gene072181 | 0.815475 | 9.07E-52 | -1.69E-46 |
| MS.gene050463 | MS.gene08865 | 0.876756 | 1.08E-68 | -1.69E-46 |
| MS.gene050463 | MS.gene09018 | 0.857298 | 1.79E-62 | -1.69E-46 |
| MS.gene050463 | MS.gene09227 | 0.862809 | 3.90E-64 | -1.69E-46 |
| MS.gene050463 | MS.gene28665 | 0.802865 | 4.58E-49 | -1.69E-46 |
| MS.gene050463 | MS.gene29069 | 0.834894 | 2.30E-56 | -1.69E-46 |
| MS.gene050463 | MS.gene32215 | 0.803082 | 4.13E-49 | -1.69E-46 |
| MS.gene050463 | MS.gene33033 | 0.837682 | 4.50E-57 | -1.69E-46 |
| MS.gene050463 | MS.gene39118 | 0.814205 | 1.73E-51 | -1.69E-46 |
| MS.gene050463 | MS.gene62835 | 0.820799 | 5.67E-53 | -1.69E-46 |
| MS.gene050463 | MS.gene67601 | 0.821942 | 3.09E-53 | -1.69E-46 |
| MS.gene050463 | MS.gene70706 | 0.868486 | 6.30E-66 | -1.69E-46 |
| MS.gene050463 | MS.gene72286 | 0.820248 | 7.58E-53 | -1.69E-46 |
| MS.gene050463 | MS.gene76146 | 0.810357 | 1.20E-50 | -1.69E-46 |
| MS.gene050463 | MS.gene85220 | 0.823728 | 1.19E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050463.t1 | MTR_7g115120 | 97.442 | 391 | 8 | 2 | 1 | 391 | 1 | 389 | 0.0 | 771 |
| MS.gene050463.t1 | MTR_1g080920 | 56.543 | 405 | 153 | 10 | 1 | 387 | 1 | 400 | 3.05e-131 | 383 |
| MS.gene050463.t1 | MTR_7g115140 | 58.960 | 173 | 49 | 5 | 99 | 268 | 53 | 206 | 1.08e-53 | 177 |
| MS.gene050463.t1 | MTR_3g109310 | 52.899 | 138 | 58 | 3 | 151 | 281 | 76 | 213 | 5.86e-31 | 120 |
| MS.gene050463.t1 | MTR_1g008990 | 58.333 | 120 | 45 | 2 | 170 | 286 | 142 | 259 | 3.81e-25 | 105 |
| MS.gene050463.t1 | MTR_1g008990 | 54.622 | 119 | 46 | 2 | 170 | 285 | 142 | 255 | 1.16e-21 | 94.0 |
| MS.gene050463.t1 | MTR_4g070860 | 40.000 | 115 | 59 | 1 | 173 | 287 | 17 | 121 | 3.61e-16 | 75.9 |
| MS.gene050463.t1 | MTR_3g110010 | 56.410 | 78 | 34 | 0 | 200 | 277 | 633 | 710 | 3.27e-15 | 77.8 |
| MS.gene050463.t1 | MTR_3g109982 | 56.579 | 76 | 33 | 0 | 202 | 277 | 651 | 726 | 5.93e-15 | 77.0 |
| MS.gene050463.t1 | MTR_3g117120 | 39.785 | 93 | 56 | 0 | 193 | 285 | 27 | 119 | 1.42e-14 | 71.2 |
| MS.gene050463.t1 | MTR_8g015250 | 40.816 | 98 | 53 | 1 | 171 | 268 | 54 | 146 | 7.72e-14 | 69.7 |
| MS.gene050463.t1 | MTR_7g029400 | 40.816 | 98 | 53 | 1 | 171 | 268 | 64 | 156 | 1.15e-13 | 69.7 |
| MS.gene050463.t1 | MTR_8g086020 | 35.238 | 105 | 68 | 0 | 181 | 285 | 20 | 124 | 1.23e-13 | 68.6 |
| MS.gene050463.t1 | MTR_6g016375 | 47.297 | 74 | 39 | 0 | 196 | 269 | 90 | 163 | 8.41e-13 | 67.4 |
| MS.gene050463.t1 | MTR_1g022495 | 29.747 | 158 | 88 | 3 | 165 | 309 | 9 | 156 | 2.47e-12 | 65.1 |
| MS.gene050463.t1 | MTR_7g017880 | 42.857 | 91 | 44 | 1 | 178 | 268 | 77 | 159 | 4.37e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050463.t1 | AT5G28770 | 45.501 | 389 | 127 | 14 | 1 | 384 | 1 | 309 | 5.44e-72 | 228 |
| MS.gene050463.t1 | AT5G28770 | 45.195 | 385 | 127 | 14 | 1 | 384 | 1 | 302 | 7.63e-68 | 217 |
| MS.gene050463.t1 | AT5G28770 | 47.810 | 274 | 90 | 9 | 1 | 269 | 1 | 226 | 1.95e-53 | 178 |
| MS.gene050463.t1 | AT4G02640 | 37.615 | 327 | 147 | 8 | 1 | 285 | 1 | 312 | 1.93e-39 | 145 |
| MS.gene050463.t1 | AT4G02640 | 37.615 | 327 | 147 | 8 | 1 | 285 | 1 | 312 | 2.29e-39 | 145 |
| MS.gene050463.t1 | AT4G02640 | 37.072 | 321 | 151 | 7 | 1 | 285 | 1 | 306 | 6.06e-39 | 144 |
| MS.gene050463.t1 | AT4G02640 | 37.072 | 321 | 151 | 7 | 1 | 285 | 1 | 306 | 6.62e-39 | 144 |
| MS.gene050463.t1 | AT3G54620 | 34.293 | 382 | 162 | 14 | 1 | 325 | 1 | 350 | 1.64e-37 | 140 |
| MS.gene050463.t1 | AT5G24800 | 55.814 | 129 | 47 | 4 | 158 | 277 | 76 | 203 | 7.49e-35 | 130 |
| MS.gene050463.t1 | AT5G28770 | 43.404 | 235 | 80 | 9 | 1 | 230 | 1 | 187 | 6.47e-31 | 118 |
| MS.gene050463.t1 | AT3G54620 | 32.723 | 382 | 151 | 16 | 1 | 325 | 1 | 333 | 2.29e-25 | 106 |
| MS.gene050463.t1 | AT3G30530 | 39.796 | 98 | 56 | 1 | 171 | 268 | 59 | 153 | 5.42e-13 | 67.4 |
| MS.gene050463.t1 | AT2G04038 | 42.857 | 98 | 51 | 1 | 171 | 268 | 54 | 146 | 8.82e-13 | 66.2 |
| MS.gene050463.t1 | AT1G75390 | 37.963 | 108 | 62 | 1 | 194 | 301 | 39 | 141 | 1.03e-12 | 66.2 |
| MS.gene050463.t1 | AT2G18160 | 39.759 | 83 | 50 | 0 | 193 | 275 | 28 | 110 | 1.86e-12 | 65.5 |
| MS.gene050463.t1 | AT1G13600 | 38.776 | 98 | 54 | 1 | 171 | 268 | 67 | 158 | 2.03e-11 | 63.2 |
| MS.gene050463.t1 | AT5G15830 | 45.545 | 101 | 44 | 4 | 170 | 268 | 55 | 146 | 9.74e-11 | 60.8 |
Find 80 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCTTCCCGATCTATTAT+TGG | 0.211521 | 7.3:+2310946 | None:intergenic |
| CTTTCAGGATGCTCTCTAAT+AGG | 0.224164 | 7.3:-2311837 | MS.gene050463:intron |
| TATGTAGAATGCGGCCCTTC+TGG | 0.245369 | 7.3:-2312391 | MS.gene050463:intron |
| CTGAAATAACGGAGCAATAT+TGG | 0.250912 | 7.3:-2313669 | MS.gene050463:CDS |
| TATTGATTCTGAGGATTATC+AGG | 0.285549 | 7.3:-2313449 | MS.gene050463:CDS |
| ATTGTAACAGCAGGTTTCTT+TGG | 0.288769 | 7.3:+2312307 | None:intergenic |
| GAGACAGTTAAAAGATTTAC+TGG | 0.291659 | 7.3:-2311145 | MS.gene050463:CDS |
| CTCATGGCAATAGGGATCTT+TGG | 0.341962 | 7.3:-2312622 | MS.gene050463:intron |
| CCATCTTATCCTTCTGAACT+TGG | 0.355060 | 7.3:-2312567 | MS.gene050463:CDS |
| CCTGCCACGGGTGGCTAGCT+TGG | 0.382757 | 7.3:-2310855 | MS.gene050463:CDS |
| AAGATATCAAAGTTGCTGTT+GGG | 0.385646 | 7.3:-2312342 | MS.gene050463:CDS |
| GACATTAGATTATTAGATAA+GGG | 0.396715 | 7.3:+2310989 | None:intergenic |
| TTTCAGGATGCTCTCTAATA+GGG | 0.402739 | 7.3:-2311836 | MS.gene050463:intron |
| TCCTTCTGAACTTGGACCTC+TGG | 0.404582 | 7.3:-2312559 | MS.gene050463:CDS |
| ATTCTATCACTTGTCTTCTT+CGG | 0.406886 | 7.3:+2310802 | None:intergenic |
| TATTAGGTCTCTGAATTAAG+AGG | 0.422615 | 7.3:-2311646 | MS.gene050463:intron |
| CCAAGCTAGCCACCCGTGGC+AGG | 0.428000 | 7.3:+2310855 | None:intergenic |
| GTTGAAGTTGAAGATGAAGA+AGG | 0.442163 | 7.3:+2313520 | None:intergenic |
| GCAGCAGGTGGGAACAAGAT+AGG | 0.452428 | 7.3:-2310890 | MS.gene050463:CDS |
| ATGGGAATGTCATTATTTGA+TGG | 0.455802 | 7.3:-2311082 | MS.gene050463:CDS |
| GATGGCTGTGATCCATTGTC+AGG | 0.464580 | 7.3:+2312585 | None:intergenic |
| GAGATACAACAAAGATGAAT+CGG | 0.465070 | 7.3:-2313621 | MS.gene050463:CDS |
| GGGATCTTTGGTCAAATCTC+AGG | 0.465850 | 7.3:-2312610 | MS.gene050463:CDS |
| GGACATTAGATTATTAGATA+AGG | 0.466925 | 7.3:+2310988 | None:intergenic |
| AAAGATATCAAAGTTGCTGT+TGG | 0.482051 | 7.3:-2312343 | MS.gene050463:CDS |
| GAGGGAGAGATTAATATGAA+TGG | 0.483459 | 7.3:-2312244 | MS.gene050463:CDS |
| GGACCTCTGGCTACTTTGAA+AGG | 0.489971 | 7.3:-2312546 | MS.gene050463:intron |
| AATGTCTGAGGTATCATCAA+TGG | 0.491343 | 7.3:-2311101 | MS.gene050463:CDS |
| GGCGCAAGCAAGATCAAGCT+TGG | 0.492090 | 7.3:+2313414 | None:intergenic |
| GTTATCAATTGCTGAAATAA+CGG | 0.504761 | 7.3:-2313680 | MS.gene050463:CDS |
| GCAGGTTTCTTTGGCATGCA+AGG | 0.507308 | 7.3:+2312316 | None:intergenic |
| ATGTCTGAGGTATCATCAAT+GGG | 0.509553 | 7.3:-2311100 | MS.gene050463:CDS |
| TTATTTGGATCTTCTTGCAC+AGG | 0.510884 | 7.3:+2311025 | None:intergenic |
| AGAGGAGCCAATAATAGATC+GGG | 0.512572 | 7.3:-2310953 | MS.gene050463:CDS |
| CAGAAGAACACCGCAGCAGG+TGG | 0.514294 | 7.3:-2310902 | MS.gene050463:CDS |
| GCGCCGCCGTCGCTAAGTCG+AGG | 0.516197 | 7.3:-2313396 | MS.gene050463:CDS |
| CGCCGCCGTCGCTAAGTCGA+GGG | 0.517985 | 7.3:-2313395 | MS.gene050463:intron |
| GAGAGGAGCCAATAATAGAT+CGG | 0.524926 | 7.3:-2310954 | MS.gene050463:CDS |
| GTTGACTTCGAAAGCGTGCA+AGG | 0.526678 | 7.3:-2313647 | MS.gene050463:CDS |
| GAATCGGAGTGATTCAGAAT+GGG | 0.529997 | 7.3:-2313605 | MS.gene050463:CDS |
| GGCTCCTCTCATATCATGAC+TGG | 0.535600 | 7.3:+2310967 | None:intergenic |
| GTGCAGAAGAACACCGCAGC+AGG | 0.536590 | 7.3:-2310905 | MS.gene050463:CDS |
| CCAAGTTCAGAAGGATAAGA+TGG | 0.536978 | 7.3:+2312567 | None:intergenic |
| CAATAATAGTATTGATTCTG+AGG | 0.537078 | 7.3:-2313458 | MS.gene050463:CDS |
| AGATATCAAAGTTGCTGTTG+GGG | 0.538293 | 7.3:-2312341 | MS.gene050463:CDS |
| ACAATCAAGTCAACAACAAG+TGG | 0.544242 | 7.3:-2312289 | MS.gene050463:CDS |
| TGAATCGGAGTGATTCAGAA+TGG | 0.545437 | 7.3:-2313606 | MS.gene050463:CDS |
| GCCAGAGGTCCAAGTTCAGA+AGG | 0.550767 | 7.3:+2312558 | None:intergenic |
| CATCTTCAGAGTCGAATTCG+TGG | 0.551475 | 7.3:-2310830 | MS.gene050463:CDS |
| AACAAATTCCCTGCCACGGG+TGG | 0.555330 | 7.3:-2310864 | MS.gene050463:CDS |
| AAGATTTACTGGATCGAACC+CGG | 0.558877 | 7.3:-2311134 | MS.gene050463:CDS |
| CAAGCTAGCCACCCGTGGCA+GGG | 0.562427 | 7.3:+2310856 | None:intergenic |
| TCTTCGTCTTGAGCGTCTAG+CGG | 0.573008 | 7.3:+2311810 | None:intergenic |
| CAGACATTGCATTAAACACC+GGG | 0.574406 | 7.3:+2311116 | None:intergenic |
| TAGATGGATCGTTTCCAGAA+GGG | 0.575636 | 7.3:+2312377 | None:intergenic |
| ATCAGACGATGAGGAAGCTG+AGG | 0.576946 | 7.3:-2312263 | MS.gene050463:CDS |
| TTTAACTGAGCTTGAAACAC+AGG | 0.587276 | 7.3:-2311776 | MS.gene050463:intron |
| GTTGACTTGATTGTAACAGC+AGG | 0.587759 | 7.3:+2312298 | None:intergenic |
| ACGAACAAATTCCCTGCCAC+GGG | 0.590000 | 7.3:-2310867 | MS.gene050463:CDS |
| TTAGATGGATCGTTTCCAGA+AGG | 0.592645 | 7.3:+2312376 | None:intergenic |
| ACTTCGAAAGCGTGCAAGGG+AGG | 0.597046 | 7.3:-2313643 | MS.gene050463:CDS |
| TCAGACATTGCATTAAACAC+CGG | 0.598502 | 7.3:+2311115 | None:intergenic |
| AAATCTCAGGATCCTGACAA+TGG | 0.601386 | 7.3:-2312597 | MS.gene050463:CDS |
| GACGAACAAATTCCCTGCCA+CGG | 0.607260 | 7.3:-2310868 | MS.gene050463:CDS |
| TGTTGAAACATTAAGAGCAA+AGG | 0.611502 | 7.3:-2311536 | MS.gene050463:intron |
| TATCTTGTTCCCACCTGCTG+CGG | 0.616019 | 7.3:+2310892 | None:intergenic |
| GCATCAGCTGATGACTCAGA+AGG | 0.620005 | 7.3:+2311055 | None:intergenic |
| TTGACTTCGAAAGCGTGCAA+GGG | 0.621528 | 7.3:-2313646 | MS.gene050463:CDS |
| CTGATGCAAAACGAGTAAGA+AGG | 0.628581 | 7.3:-2312210 | MS.gene050463:intron |
| TTTGAGATTGACATCAACGG+TGG | 0.645017 | 7.3:+2313483 | None:intergenic |
| TCAGACGATGAGGAAGCTGA+GGG | 0.659901 | 7.3:-2312262 | MS.gene050463:CDS |
| ATGTCCAGTCATGATATGAG+AGG | 0.664118 | 7.3:-2310971 | MS.gene050463:CDS |
| GGTGTTTAATGCAATGTCTG+AGG | 0.664829 | 7.3:-2311113 | MS.gene050463:CDS |
| AGAAGAACACCGCAGCAGGT+GGG | 0.666761 | 7.3:-2310901 | MS.gene050463:CDS |
| AAGTGGATCATCAGACGATG+AGG | 0.668470 | 7.3:-2312272 | MS.gene050463:CDS |
| TGTTCCAAGCTAGCCACCCG+TGG | 0.670248 | 7.3:+2310851 | None:intergenic |
| TACCCTCGACTTAGCGACGG+CGG | 0.681240 | 7.3:+2313393 | None:intergenic |
| AAACCTTTCAAAGTAGCCAG+AGG | 0.696494 | 7.3:+2312543 | None:intergenic |
| ATATACCCTCGACTTAGCGA+CGG | 0.708838 | 7.3:+2313390 | None:intergenic |
| CTTCAGAGTCGAATTCGTGG+TGG | 0.718456 | 7.3:-2310827 | MS.gene050463:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATATTCTATCTTATT+AGG | - | chr7.3:2312837-2312856 | MS.gene050463:intron | 10.0% |
| !! | AAAAATGAGAACAATATAAA+GGG | + | chr7.3:2313316-2313335 | None:intergenic | 15.0% |
| !! | TAAAAATGAGAACAATATAA+AGG | + | chr7.3:2313317-2313336 | None:intergenic | 15.0% |
| !! | TGTATAAAATACTTAATTCA+GGG | + | chr7.3:2312614-2312633 | None:intergenic | 15.0% |
| !! | TTGTATAAAATACTTAATTC+AGG | + | chr7.3:2312615-2312634 | None:intergenic | 15.0% |
| !!! | ATAAGTTATTTCTATAATCA+AGG | + | chr7.3:2312554-2312573 | None:intergenic | 15.0% |
| !!! | TATATAGCTTTTGAATATTA+CGG | + | chr7.3:2311346-2311365 | None:intergenic | 15.0% |
| !!! | TCTTTATTTTGTAATTTAGA+TGG | + | chr7.3:2312141-2312160 | None:intergenic | 15.0% |
| !!! | TTATATTGTTCTCATTTTTA+AGG | - | chr7.3:2313317-2313336 | MS.gene050463:intron | 15.0% |
| !! | AAACTATAATAGAGATTTCA+CGG | + | chr7.3:2312483-2312502 | None:intergenic | 20.0% |
| !! | ACAACAAAAAAAAAAATGCA+TGG | + | chr7.3:2311172-2311191 | None:intergenic | 20.0% |
| !! | ATAGTAGATTAAATTGTATC+AGG | + | chr7.3:2311209-2311228 | None:intergenic | 20.0% |
| !! | GACATTAGATTATTAGATAA+GGG | + | chr7.3:2313513-2313532 | None:intergenic | 20.0% |
| !! | TAGTAGATTAAATTGTATCA+GGG | + | chr7.3:2311208-2311227 | None:intergenic | 20.0% |
| !! | TTAATTCTGTCAACATATAT+GGG | + | chr7.3:2311510-2311529 | None:intergenic | 20.0% |
| !! | TTTAATTCTGTCAACATATA+TGG | + | chr7.3:2311511-2311530 | None:intergenic | 20.0% |
| !!! | AGTAGATCACAATTTTTTAA+GGG | - | chr7.3:2312058-2312077 | MS.gene050463:intron | 20.0% |
| !!! | TAGTAGATCACAATTTTTTA+AGG | - | chr7.3:2312057-2312076 | MS.gene050463:intron | 20.0% |
| !!! | TTTTATTCATATGTAGAATG+CGG | - | chr7.3:2312099-2312118 | MS.gene050463:intron | 20.0% |
| ! | AAACATGGTAAATACATTGA+AGG | - | chr7.3:2312029-2312048 | MS.gene050463:intron | 25.0% |
| ! | AACACTTGAGAAATTATTTG+AGG | - | chr7.3:2312410-2312429 | MS.gene050463:intron | 25.0% |
| ! | AACTACTTTACTAGTAAAAC+TGG | - | chr7.3:2313000-2313019 | MS.gene050463:intron | 25.0% |
| ! | AACTATAATAGAGATTTCAC+GGG | + | chr7.3:2312482-2312501 | None:intergenic | 25.0% |
| ! | ACACATAAATCAATTGGAAA+TGG | + | chr7.3:2313263-2313282 | None:intergenic | 25.0% |
| ! | ACACTTGAGAAATTATTTGA+GGG | - | chr7.3:2312411-2312430 | MS.gene050463:intron | 25.0% |
| ! | ATTTGAACGACTAATTAAGA+TGG | + | chr7.3:2312807-2312826 | None:intergenic | 25.0% |
| ! | GGACATTAGATTATTAGATA+AGG | + | chr7.3:2313514-2313533 | None:intergenic | 25.0% |
| ! | GGTTGAAAAAAGTGATTATT+TGG | + | chr7.3:2313492-2313511 | None:intergenic | 25.0% |
| ! | GTTATCAATTGCTGAAATAA+CGG | - | chr7.3:2310819-2310838 | MS.gene050463:CDS | 25.0% |
| ! | TCAAATTAGTCAATCTAAAC+AGG | + | chr7.3:2312373-2312392 | None:intergenic | 25.0% |
| !! | AGCAGAATTGTTGAATTTTT+GGG | + | chr7.3:2312917-2312936 | None:intergenic | 25.0% |
| !! | ATGTTTTCTTTTACTACTCA+TGG | - | chr7.3:2311861-2311880 | MS.gene050463:intron | 25.0% |
| !! | TCCAATTGATTTATGTGTAT+TGG | - | chr7.3:2313265-2313284 | MS.gene050463:intron | 25.0% |
| !!! | ACTATATATTTTTTTGCGTG+TGG | - | chr7.3:2311224-2311243 | MS.gene050463:intron | 25.0% |
| !!! | CAATAATAGTATTGATTCTG+AGG | - | chr7.3:2311041-2311060 | MS.gene050463:CDS | 25.0% |
| !!! | TAGTTTTGATTCTTCAAAGT+TGG | - | chr7.3:2311783-2311802 | MS.gene050463:CDS | 25.0% |
| AAAGATATCAAAGTTGCTGT+TGG | - | chr7.3:2312156-2312175 | MS.gene050463:intron | 30.0% | |
| ATGGGAATGTCATTATTTGA+TGG | - | chr7.3:2313417-2313436 | MS.gene050463:CDS | 30.0% | |
| ATGTGACTTTGGTAAAATCA+CGG | + | chr7.3:2311460-2311479 | None:intergenic | 30.0% | |
| GAGACAGTTAAAAGATTTAC+TGG | - | chr7.3:2313354-2313373 | MS.gene050463:intron | 30.0% | |
| GAGATACAACAAAGATGAAT+CGG | - | chr7.3:2310878-2310897 | MS.gene050463:CDS | 30.0% | |
| GCCAATACACATAAATCAAT+TGG | + | chr7.3:2313269-2313288 | None:intergenic | 30.0% | |
| GTTTATTATCGATGTGACTT+TGG | + | chr7.3:2311471-2311490 | None:intergenic | 30.0% | |
| TACGTGTATGTTTGGATATT+CGG | - | chr7.3:2311301-2311320 | MS.gene050463:intron | 30.0% | |
| TATTAGGTCTCTGAATTAAG+AGG | - | chr7.3:2312853-2312872 | MS.gene050463:intron | 30.0% | |
| TGGTAAATACATTGAAGGAA+AGG | - | chr7.3:2312034-2312053 | MS.gene050463:intron | 30.0% | |
| TGTTGAAACATTAAGAGCAA+AGG | - | chr7.3:2312963-2312982 | MS.gene050463:intron | 30.0% | |
| ! | AAGATATCAAAGTTGCTGTT+GGG | - | chr7.3:2312157-2312176 | MS.gene050463:intron | 30.0% |
| ! | ATAGCTTTTGAATATTACGG+TGG | + | chr7.3:2311343-2311362 | None:intergenic | 30.0% |
| ! | CACAATTTTACGTGTATGTT+TGG | - | chr7.3:2311293-2311312 | MS.gene050463:intron | 30.0% |
| ! | CAGCAGAATTGTTGAATTTT+TGG | + | chr7.3:2312918-2312937 | None:intergenic | 30.0% |
| ! | GTGTGCATATGTTAATCTTT+TGG | + | chr7.3:2311276-2311295 | None:intergenic | 30.0% |
| ! | GTTGTTCACGTAAAAACTTT+TGG | + | chr7.3:2310924-2310943 | None:intergenic | 30.0% |
| ! | TTTTACTACTCATGGCAATA+GGG | - | chr7.3:2311869-2311888 | MS.gene050463:intron | 30.0% |
| !! | ATTAATTTGCGAAATTGGGA+TGG | - | chr7.3:2311430-2311449 | MS.gene050463:intron | 30.0% |
| !! | TATTGATTCTGAGGATTATC+AGG | - | chr7.3:2311050-2311069 | MS.gene050463:CDS | 30.0% |
| !!! | GATTTTGAGATTGACATCAA+CGG | + | chr7.3:2311022-2311041 | None:intergenic | 30.0% |
| !!! | TCTCATTTTTAAGGTGAAGA+TGG | - | chr7.3:2313326-2313345 | MS.gene050463:intron | 30.0% |
| AAACATGCACAAAATCACGA+TGG | + | chr7.3:2311397-2311416 | None:intergenic | 35.0% | |
| AAATTATTTGAGGGAGATCG+TGG | - | chr7.3:2312420-2312439 | MS.gene050463:intron | 35.0% | |
| AAGCTTAGATGAAAACCTAG+TGG | + | chr7.3:2311654-2311673 | None:intergenic | 35.0% | |
| AATGCTTCCCGATCTATTAT+TGG | + | chr7.3:2313556-2313575 | None:intergenic | 35.0% | |
| ACAATCAAGTCAACAACAAG+TGG | - | chr7.3:2312210-2312229 | MS.gene050463:intron | 35.0% | |
| ACTAATTAACAAGCACTCCT+TGG | + | chr7.3:2311713-2311732 | None:intergenic | 35.0% | |
| AGAAGAGAATGCAGAAGAAA+TGG | + | chr7.3:2312771-2312790 | None:intergenic | 35.0% | |
| AGAATCTTGATCCAAGTAGT+AGG | + | chr7.3:2313035-2313054 | None:intergenic | 35.0% | |
| AGTTTACACAGTCAGTACAT+CGG | - | chr7.3:2313074-2313093 | MS.gene050463:intron | 35.0% | |
| ATTGTAACAGCAGGTTTCTT+TGG | + | chr7.3:2312195-2312214 | None:intergenic | 35.0% | |
| CTAATTAACAAGCACTCCTT+GGG | + | chr7.3:2311712-2311731 | None:intergenic | 35.0% | |
| GAATGCATGAATCATGCAAT+TGG | + | chr7.3:2311632-2311651 | None:intergenic | 35.0% | |
| GAGGGAGAGATTAATATGAA+TGG | - | chr7.3:2312255-2312274 | MS.gene050463:CDS | 35.0% | |
| GTGACTGCTTAGATTAAGAT+CGG | - | chr7.3:2313096-2313115 | MS.gene050463:intron | 35.0% | |
| GTGCATGTTTGATATTACAG+CGG | - | chr7.3:2311407-2311426 | MS.gene050463:intron | 35.0% | |
| GTTGAAGTTGAAGATGAAGA+AGG | + | chr7.3:2310982-2311001 | None:intergenic | 35.0% | |
| TCAGACATTGCATTAAACAC+CGG | + | chr7.3:2313387-2313406 | None:intergenic | 35.0% | |
| TCCAAACAATTATCAACCCA+AGG | - | chr7.3:2311693-2311712 | MS.gene050463:intron | 35.0% | |
| TGGATATTCGGTCAAAATCA+CGG | - | chr7.3:2311313-2311332 | MS.gene050463:intron | 35.0% | |
| TGTCTGCATATGTGAAAACA+TGG | - | chr7.3:2312014-2312033 | MS.gene050463:intron | 35.0% | |
| TTATTTGGATCTTCTTGCAC+AGG | + | chr7.3:2313477-2313496 | None:intergenic | 35.0% | |
| TTTAACTGAGCTTGAAACAC+AGG | - | chr7.3:2312723-2312742 | MS.gene050463:intron | 35.0% | |
| TTTCAGGATGCTCTCTAATA+GGG | - | chr7.3:2312663-2312682 | MS.gene050463:intron | 35.0% | |
| ! | AATGTCTGAGGTATCATCAA+TGG | - | chr7.3:2313398-2313417 | MS.gene050463:CDS | 35.0% |
| ! | AATTGGAAATGGATTCCTTC+TGG | + | chr7.3:2313252-2313271 | None:intergenic | 35.0% |
| ! | AGATATCAAAGTTGCTGTTG+GGG | - | chr7.3:2312158-2312177 | MS.gene050463:intron | 35.0% |
| ! | ATGTCTGAGGTATCATCAAT+GGG | - | chr7.3:2313399-2313418 | MS.gene050463:CDS | 35.0% |
| ! | CTGAAATAACGGAGCAATAT+TGG | - | chr7.3:2310830-2310849 | MS.gene050463:CDS | 35.0% |
| ! | CTTTTACTACTCATGGCAAT+AGG | - | chr7.3:2311868-2311887 | MS.gene050463:intron | 35.0% |
| ! | GTGTTTTGCACAAGAAATCT+TGG | - | chr7.3:2312320-2312339 | MS.gene050463:CDS | 35.0% |
| ! | TTACTCGTTTTGCATCAGTA+GGG | + | chr7.3:2312287-2312306 | None:intergenic | 35.0% |
| !! | AGCGGATTAATTTGCGAAAT+TGG | - | chr7.3:2311425-2311444 | MS.gene050463:intron | 35.0% |
| !! | GCGGATTAATTTGCGAAATT+GGG | - | chr7.3:2311426-2311445 | MS.gene050463:intron | 35.0% |
| !! | TCCTTGGGTTGATAATTGTT+TGG | + | chr7.3:2311697-2311716 | None:intergenic | 35.0% |
| AAACCTTTCAAAGTAGCCAG+AGG | + | chr7.3:2311959-2311978 | None:intergenic | 40.0% | |
| AAATCTCAGGATCCTGACAA+TGG | - | chr7.3:2311902-2311921 | MS.gene050463:intron | 40.0% | |
| AAGATTTACTGGATCGAACC+CGG | - | chr7.3:2313365-2313384 | MS.gene050463:intron | 40.0% | |
| AGACACTAGCACTTGTTCTA+AGG | + | chr7.3:2311557-2311576 | None:intergenic | 40.0% | |
| AGAGGAGCCAATAATAGATC+GGG | - | chr7.3:2313546-2313565 | MS.gene050463:CDS | 40.0% | |
| AGGCAATGTCATCAGGTATT+AGG | + | chr7.3:2312644-2312663 | None:intergenic | 40.0% | |
| ATGTCCAGTCATGATATGAG+AGG | - | chr7.3:2313528-2313547 | MS.gene050463:CDS | 40.0% | |
| CAGACATTGCATTAAACACC+GGG | + | chr7.3:2313386-2313405 | None:intergenic | 40.0% | |
| CATGATTCATGCATTCCACT+AGG | - | chr7.3:2311636-2311655 | MS.gene050463:CDS | 40.0% | |
| CCAAGTTCAGAAGGATAAGA+TGG | + | chr7.3:2311935-2311954 | None:intergenic | 40.0% | |
| CCATCTTATCCTTCTGAACT+TGG | - | chr7.3:2311932-2311951 | MS.gene050463:intron | 40.0% | |
| CTGATGCAAAACGAGTAAGA+AGG | - | chr7.3:2312289-2312308 | MS.gene050463:CDS | 40.0% | |
| CTTTCAGGATGCTCTCTAAT+AGG | - | chr7.3:2312662-2312681 | MS.gene050463:intron | 40.0% | |
| GAATCGGAGTGATTCAGAAT+GGG | - | chr7.3:2310894-2310913 | MS.gene050463:CDS | 40.0% | |
| GAGAGGAGCCAATAATAGAT+CGG | - | chr7.3:2313545-2313564 | MS.gene050463:CDS | 40.0% | |
| GGTGTTTAATGCAATGTCTG+AGG | - | chr7.3:2313386-2313405 | MS.gene050463:intron | 40.0% | |
| GGTTACTACTGGATTCAGAT+TGG | + | chr7.3:2313195-2313214 | None:intergenic | 40.0% | |
| GGTTATAGAAGCCTACTACT+TGG | - | chr7.3:2313021-2313040 | MS.gene050463:intron | 40.0% | |
| TAGATGGATCGTTTCCAGAA+GGG | + | chr7.3:2312125-2312144 | None:intergenic | 40.0% | |
| TGAATCGGAGTGATTCAGAA+TGG | - | chr7.3:2310893-2310912 | MS.gene050463:CDS | 40.0% | |
| TTAGATGGATCGTTTCCAGA+AGG | + | chr7.3:2312126-2312145 | None:intergenic | 40.0% | |
| ! | CTTACTCGTTTTGCATCAGT+AGG | + | chr7.3:2312288-2312307 | None:intergenic | 40.0% |
| ! | GATTCCTTCTGGTTGGAATA+TGG | + | chr7.3:2313241-2313260 | None:intergenic | 40.0% |
| ! | TTTGAGATTGACATCAACGG+TGG | + | chr7.3:2311019-2311038 | None:intergenic | 40.0% |
| !! | ACTAGCACTTGTTCTAAGGT+GGG | + | chr7.3:2311553-2311572 | None:intergenic | 40.0% |
| !! | CTATTAGAGAGCATCCTGAA+AGG | + | chr7.3:2312664-2312683 | None:intergenic | 40.0% |
| !! | GTACTGACTGTGTAAACTCA+AGG | + | chr7.3:2313072-2313091 | None:intergenic | 40.0% |
| !! | GTTGACTTGATTGTAACAGC+AGG | + | chr7.3:2312204-2312223 | None:intergenic | 40.0% |
| AAGTGGATCATCAGACGATG+AGG | - | chr7.3:2312227-2312246 | MS.gene050463:CDS | 45.0% | |
| ACCTGATGACATTGCCTTTC+AGG | - | chr7.3:2312647-2312666 | MS.gene050463:intron | 45.0% | |
| ATATACCCTCGACTTAGCGA+CGG | + | chr7.3:2311112-2311131 | None:intergenic | 45.0% | |
| CATCTTCAGAGTCGAATTCG+TGG | - | chr7.3:2313669-2313688 | MS.gene050463:CDS | 45.0% | |
| CTCATGGCAATAGGGATCTT+TGG | - | chr7.3:2311877-2311896 | MS.gene050463:intron | 45.0% | |
| GGATGCTTGAGATTCAACCT+CGG | - | chr7.3:2313117-2313136 | MS.gene050463:intron | 45.0% | |
| GGGATCTTTGGTCAAATCTC+AGG | - | chr7.3:2311889-2311908 | MS.gene050463:intron | 45.0% | |
| GTGTGGCAATCTGCTTTCAT+GGG | - | chr7.3:2311241-2311260 | MS.gene050463:intron | 45.0% | |
| TCCTGAAAGGCAATGTCATC+AGG | + | chr7.3:2312651-2312670 | None:intergenic | 45.0% | |
| ! | GGAAATGGATTCCTTCTGGT+TGG | + | chr7.3:2313248-2313267 | None:intergenic | 45.0% |
| ! | TTGACTTCGAAAGCGTGCAA+GGG | - | chr7.3:2310853-2310872 | MS.gene050463:CDS | 45.0% |
| !! | ACTTGTTCTAAGGTGGGAGA+AGG | + | chr7.3:2311547-2311566 | None:intergenic | 45.0% |
| !! | CACTAGCACTTGTTCTAAGG+TGG | + | chr7.3:2311554-2311573 | None:intergenic | 45.0% |
| ACGAACAAATTCCCTGCCAC+GGG | - | chr7.3:2313632-2313651 | MS.gene050463:CDS | 50.0% | |
| AGTCAGGCAAGGGTTACTAC+TGG | + | chr7.3:2313206-2313225 | None:intergenic | 50.0% | |
| ATCAGACGATGAGGAAGCTG+AGG | - | chr7.3:2312236-2312255 | MS.gene050463:CDS | 50.0% | |
| ATTCAACCTCGGTGGTGCTT+TGG | - | chr7.3:2313128-2313147 | MS.gene050463:intron | 50.0% | |
| CCTGCCATATTCCAACCAGA+AGG | - | chr7.3:2313234-2313253 | MS.gene050463:intron | 50.0% | |
| CGTGTGGCAATCTGCTTTCA+TGG | - | chr7.3:2311240-2311259 | MS.gene050463:intron | 50.0% | |
| CTTCAGAGTCGAATTCGTGG+TGG | - | chr7.3:2313672-2313691 | MS.gene050463:CDS | 50.0% | |
| GACGAACAAATTCCCTGCCA+CGG | - | chr7.3:2313631-2313650 | MS.gene050463:CDS | 50.0% | |
| GATGGCTGTGATCCATTGTC+AGG | + | chr7.3:2311917-2311936 | None:intergenic | 50.0% | |
| GCAGGTTTCTTTGGCATGCA+AGG | + | chr7.3:2312186-2312205 | None:intergenic | 50.0% | |
| GCATCAGCTGATGACTCAGA+AGG | + | chr7.3:2313447-2313466 | None:intergenic | 50.0% | |
| GGCTCCTCTCATATCATGAC+TGG | + | chr7.3:2313535-2313554 | None:intergenic | 50.0% | |
| TATCTTGTTCCCACCTGCTG+CGG | + | chr7.3:2313610-2313629 | None:intergenic | 50.0% | |
| TATGTAGAATGCGGCCCTTC+TGG | - | chr7.3:2312108-2312127 | MS.gene050463:intron | 50.0% | |
| TCAGACGATGAGGAAGCTGA+GGG | - | chr7.3:2312237-2312256 | MS.gene050463:CDS | 50.0% | |
| TCCTTCTGAACTTGGACCTC+TGG | - | chr7.3:2311940-2311959 | MS.gene050463:intron | 50.0% | |
| TCTTCGTCTTGAGCGTCTAG+CGG | + | chr7.3:2312692-2312711 | None:intergenic | 50.0% | |
| TGCTTGAGATTCAACCTCGG+TGG | - | chr7.3:2313120-2313139 | MS.gene050463:intron | 50.0% | |
| ! | CCTTCTGGTTGGAATATGGC+AGG | + | chr7.3:2313237-2313256 | None:intergenic | 50.0% |
| ! | GAAAATCCAAAGCACCACCG+AGG | + | chr7.3:2313137-2313156 | None:intergenic | 50.0% |
| ! | GGACCTCTGGCTACTTTGAA+AGG | - | chr7.3:2311953-2311972 | MS.gene050463:intron | 50.0% |
| ! | GTTGACTTCGAAAGCGTGCA+AGG | - | chr7.3:2310852-2310871 | MS.gene050463:CDS | 50.0% |
| AACAAATTCCCTGCCACGGG+TGG | - | chr7.3:2313635-2313654 | MS.gene050463:CDS | 55.0% | |
| AGAAGAACACCGCAGCAGGT+GGG | - | chr7.3:2313598-2313617 | MS.gene050463:CDS | 55.0% | |
| AGGATTCACGCAGTCAGGCA+AGG | + | chr7.3:2313217-2313236 | None:intergenic | 55.0% | |
| ATGGCAGGATTCACGCAGTC+AGG | + | chr7.3:2313222-2313241 | None:intergenic | 55.0% | |
| GCAGCAGGTGGGAACAAGAT+AGG | - | chr7.3:2313609-2313628 | MS.gene050463:CDS | 55.0% | |
| GCCAGAGGTCCAAGTTCAGA+AGG | + | chr7.3:2311944-2311963 | None:intergenic | 55.0% | |
| GGATTCACGCAGTCAGGCAA+GGG | + | chr7.3:2313216-2313235 | None:intergenic | 55.0% | |
| GGCGCAAGCAAGATCAAGCT+TGG | + | chr7.3:2311088-2311107 | None:intergenic | 55.0% | |
| ! | ACTTCGAAAGCGTGCAAGGG+AGG | - | chr7.3:2310856-2310875 | MS.gene050463:CDS | 55.0% |
| CAGAAGAACACCGCAGCAGG+TGG | - | chr7.3:2313597-2313616 | MS.gene050463:CDS | 60.0% | |
| GTGCAGAAGAACACCGCAGC+AGG | - | chr7.3:2313594-2313613 | MS.gene050463:CDS | 60.0% | |
| TACCCTCGACTTAGCGACGG+CGG | + | chr7.3:2311109-2311128 | None:intergenic | 60.0% | |
| TGTTCCAAGCTAGCCACCCG+TGG | + | chr7.3:2313651-2313670 | None:intergenic | 60.0% | |
| CAAGCTAGCCACCCGTGGCA+GGG | + | chr7.3:2313646-2313665 | None:intergenic | 65.0% | |
| CCAAGCTAGCCACCCGTGGC+AGG | + | chr7.3:2313647-2313666 | None:intergenic | 70.0% | |
| CGCCGCCGTCGCTAAGTCGA+GGG | - | chr7.3:2311104-2311123 | MS.gene050463:CDS | 70.0% | |
| ! | CCTGCCACGGGTGGCTAGCT+TGG | - | chr7.3:2313644-2313663 | MS.gene050463:CDS | 70.0% |
| GCGCCGCCGTCGCTAAGTCG+AGG | - | chr7.3:2311103-2311122 | MS.gene050463:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 2310808 | 2313713 | 2310808 | ID=MS.gene050463 |
| chr7.3 | mRNA | 2310808 | 2313713 | 2310808 | ID=MS.gene050463.t1;Parent=MS.gene050463 |
| chr7.3 | exon | 2313396 | 2313713 | 2313396 | ID=MS.gene050463.t1.exon1;Parent=MS.gene050463.t1 |
| chr7.3 | CDS | 2313396 | 2313713 | 2313396 | ID=cds.MS.gene050463.t1;Parent=MS.gene050463.t1 |
| chr7.3 | exon | 2312547 | 2312631 | 2312547 | ID=MS.gene050463.t1.exon2;Parent=MS.gene050463.t1 |
| chr7.3 | CDS | 2312547 | 2312631 | 2312547 | ID=cds.MS.gene050463.t1;Parent=MS.gene050463.t1 |
| chr7.3 | exon | 2312211 | 2312406 | 2312211 | ID=MS.gene050463.t1.exon3;Parent=MS.gene050463.t1 |
| chr7.3 | CDS | 2312211 | 2312406 | 2312211 | ID=cds.MS.gene050463.t1;Parent=MS.gene050463.t1 |
| chr7.3 | exon | 2311777 | 2311852 | 2311777 | ID=MS.gene050463.t1.exon4;Parent=MS.gene050463.t1 |
| chr7.3 | CDS | 2311777 | 2311852 | 2311777 | ID=cds.MS.gene050463.t1;Parent=MS.gene050463.t1 |
| chr7.3 | exon | 2311537 | 2311662 | 2311537 | ID=MS.gene050463.t1.exon5;Parent=MS.gene050463.t1 |
| chr7.3 | CDS | 2311537 | 2311662 | 2311537 | ID=cds.MS.gene050463.t1;Parent=MS.gene050463.t1 |
| chr7.3 | exon | 2310808 | 2311182 | 2310808 | ID=MS.gene050463.t1.exon6;Parent=MS.gene050463.t1 |
| chr7.3 | CDS | 2310808 | 2311182 | 2310808 | ID=cds.MS.gene050463.t1;Parent=MS.gene050463.t1 |
| Gene Sequence |
| Protein sequence |
