Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29368.t1 | XP_003601248.1 | 89.7 | 976 | 84 | 2 | 1 | 959 | 1 | 976 | 0.00E+00 | 1685.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29368.t1 | Q8BM47 | 27.9 | 280 | 177 | 7 | 621 | 896 | 479 | 737 | 4.3e-29 | 131.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29368.t1 | G7J5E3 | 89.7 | 976 | 84 | 2 | 1 | 959 | 1 | 976 | 0.0e+00 | 1685.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051642 | MS.gene29368 | 0.814626 | 1.40E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene29368 | 0.814641 | 1.39E-51 | -1.69E-46 |
| MS.gene053427 | MS.gene29368 | 0.807813 | 4.21E-50 | -1.69E-46 |
| MS.gene056881 | MS.gene29368 | 0.801057 | 1.08E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29368.t1 | MTR_3g077620 | 92.623 | 976 | 55 | 2 | 1 | 959 | 1 | 976 | 0.0 | 1771 |
| MS.gene29368.t1 | MTR_3g077620 | 92.563 | 874 | 48 | 2 | 1 | 857 | 1 | 874 | 0.0 | 1575 |
| MS.gene29368.t1 | MTR_3g077620 | 91.512 | 754 | 47 | 2 | 1 | 737 | 1 | 754 | 0.0 | 1324 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29368.t1 | AT3G48195 | 45.168 | 983 | 439 | 22 | 20 | 959 | 13 | 938 | 0.0 | 734 |
Find 239 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAAAATGGTCCAGTTTC+TGG | 0.145333 | 3.2:+68598288 | MS.gene29368:CDS |
| GCTTTCTAAAGCAACGTTTA+TGG | 0.186569 | 3.2:-68607945 | None:intergenic |
| TTAGGCAAGGGACTGAGTTC+TGG | 0.190949 | 3.2:+68608075 | MS.gene29368:CDS |
| GATGATTCTATGTTCAATTA+TGG | 0.202163 | 3.2:+68598084 | MS.gene29368:CDS |
| ATGATGGAAATAGTTCAATT+TGG | 0.211640 | 3.2:+68600226 | MS.gene29368:CDS |
| TCGAGGAGTGTGACTTTATA+TGG | 0.217457 | 3.2:+68598183 | MS.gene29368:CDS |
| TGCCTCATTGATTTATTTGA+TGG | 0.234548 | 3.2:-68600153 | None:intergenic |
| ATGAATTCTTCTGTGGCTTT+TGG | 0.244159 | 3.2:+68598240 | MS.gene29368:CDS |
| CCAGCCTTGCTCGTTAAATA+AGG | 0.269930 | 3.2:-68599836 | None:intergenic |
| TCAATCCTATCTATTCTTCT+TGG | 0.270221 | 3.2:-68599649 | None:intergenic |
| TACAGTCTATTCTCTGTTCC+AGG | 0.282888 | 3.2:+68599962 | MS.gene29368:CDS |
| TCAGCTGGCAAAGTCATATC+TGG | 0.290392 | 3.2:+68600395 | MS.gene29368:CDS |
| AGGCGAAAATATCATCTTAA+TGG | 0.294279 | 3.2:+68608164 | MS.gene29368:CDS |
| CTCTTCTGAGGATCTTCTTC+TGG | 0.302261 | 3.2:-68598537 | None:intergenic |
| AATTTCAACAATAAGTGATA+TGG | 0.304221 | 3.2:-68600130 | None:intergenic |
| CTTGATTCGTCGGAGTTGAT+TGG | 0.310336 | 3.2:+68597958 | MS.gene29368:CDS |
| ATGAAAATGGTGGTGAAGTT+GGG | 0.314048 | 3.2:+68598010 | MS.gene29368:CDS |
| TGATGGAAATAGTTCAATTT+GGG | 0.317753 | 3.2:+68600227 | MS.gene29368:CDS |
| TGACAGATACAAACCTGAAA+TGG | 0.335756 | 3.2:-68607080 | None:intergenic |
| TGCTGACAACTCGCTTGATT+CGG | 0.345356 | 3.2:+68598506 | MS.gene29368:CDS |
| TGATGCTCAAAAGGAAAATC+TGG | 0.351437 | 3.2:+68598614 | MS.gene29368:CDS |
| CTTTAGAAGAGGTGAGGGAT+AGG | 0.352803 | 3.2:+68598454 | MS.gene29368:CDS |
| CAATCCTATCTATTCTTCTT+GGG | 0.356272 | 3.2:-68599648 | None:intergenic |
| TCGAGTGGATTGGAATTATA+CGG | 0.358801 | 3.2:+68597904 | MS.gene29368:CDS |
| CTTTCAGTGAAAGATTGGTT+GGG | 0.363302 | 3.2:+68599707 | MS.gene29368:CDS |
| ATTCTATGACGAGGTTGTTC+AGG | 0.364642 | 3.2:+68599468 | MS.gene29368:CDS |
| CTCTTCCTTCGGCGCCGAAT+CGG | 0.370085 | 3.2:+68597717 | MS.gene29368:CDS |
| AGAGTTTGACACAGGTGAAC+TGG | 0.373794 | 3.2:-68600043 | None:intergenic |
| CAATGATGTAAAACCCTTGC+TGG | 0.375697 | 3.2:-68600348 | None:intergenic |
| CCTGTTTCCTGTGAAGTTCA+AGG | 0.376029 | 3.2:+68598483 | MS.gene29368:CDS |
| GACTTTGCCAGCTGAGAAAC+AGG | 0.377920 | 3.2:-68600387 | None:intergenic |
| AGATCAGACACACCAGAAAC+TGG | 0.381083 | 3.2:-68598300 | None:intergenic |
| GCTGACAACTCGCTTGATTC+GGG | 0.381258 | 3.2:+68598507 | MS.gene29368:CDS |
| ATTGATCAGTAATGTGTTCC+AGG | 0.381287 | 3.2:-68606983 | None:intergenic |
| ATGATTCTATGTTCAATTAT+GGG | 0.386395 | 3.2:+68598085 | MS.gene29368:CDS |
| GGCGAAAATATCATCTTAAT+GGG | 0.389819 | 3.2:+68608165 | MS.gene29368:CDS |
| TAGGCAAGGGACTGAGTTCT+GGG | 0.392227 | 3.2:+68608076 | MS.gene29368:CDS |
| AATGAAAATGGTGGTGAAGT+TGG | 0.394474 | 3.2:+68598009 | MS.gene29368:CDS |
| GAACTGGGATGGGAATCTTC+AGG | 0.398290 | 3.2:-68600027 | None:intergenic |
| AGACTGCAGTTTCATTTGTA+TGG | 0.401491 | 3.2:-68600323 | None:intergenic |
| TGTTTCTTTCAGTGAAAGAT+TGG | 0.404855 | 3.2:+68599702 | MS.gene29368:CDS |
| GAATCTGCTGGGAATGAAAA+TGG | 0.406382 | 3.2:+68597997 | MS.gene29368:CDS |
| GATTGAGAGGGAAGAGGATG+AGG | 0.409697 | 3.2:+68598041 | MS.gene29368:CDS |
| TGCTTCATGTTATGAGTGTC+AGG | 0.410697 | 3.2:+68601101 | MS.gene29368:CDS |
| CTCTCTCGCCGCTCTTCCTT+CGG | 0.412134 | 3.2:+68597706 | MS.gene29368:CDS |
| CTGTCCAAAGGAGTCTTTGC+TGG | 0.414010 | 3.2:+68601250 | MS.gene29368:CDS |
| GTCCTCCAAGAGCACTTGTT+TGG | 0.414932 | 3.2:+68599995 | MS.gene29368:CDS |
| TTGTCACCTAAGTTTCTCTC+TGG | 0.418461 | 3.2:+68608099 | MS.gene29368:CDS |
| AAGAATGGGCAGCGAACATA+TGG | 0.418773 | 3.2:-68601145 | None:intergenic |
| CAATCTTGTCGGGCACTACA+TGG | 0.421270 | 3.2:-68607032 | None:intergenic |
| TCGATACGGTTCGAGTGGAT+TGG | 0.421543 | 3.2:+68597894 | MS.gene29368:CDS |
| AGAAGAAGCGAAATCGATAT+CGG | 0.422186 | 3.2:-68597836 | None:intergenic |
| TGACGAGGTTGTTCAGGAAA+TGG | 0.422512 | 3.2:+68599474 | MS.gene29368:CDS |
| AACTGTGTCGAGGAAAATCC+TGG | 0.425481 | 3.2:+68606965 | MS.gene29368:CDS |
| TTCTCTTCGCAATAATATCA+AGG | 0.426823 | 3.2:-68599918 | None:intergenic |
| CCTTGAACTTCACAGGAAAC+AGG | 0.431773 | 3.2:-68598483 | None:intergenic |
| GAGGGAAGAGGATGAGGAAG+AGG | 0.437916 | 3.2:+68598047 | MS.gene29368:CDS |
| CCTTATTTAACGAGCAAGGC+TGG | 0.438111 | 3.2:+68599836 | MS.gene29368:CDS |
| TCTTTCAGTGAAAGATTGGT+TGG | 0.438848 | 3.2:+68599706 | MS.gene29368:CDS |
| TGAAAGATTGGTTGGGGTGA+AGG | 0.439470 | 3.2:+68599714 | MS.gene29368:CDS |
| CTCATAACATGAAGCAAGGC+TGG | 0.440085 | 3.2:-68601094 | None:intergenic |
| CGATTGGCGGAGACGTAGCC+GGG | 0.441408 | 3.2:-68597677 | None:intergenic |
| TTTAGAAGAGGTGAGGGATA+GGG | 0.452013 | 3.2:+68598455 | MS.gene29368:CDS |
| GCTGGACTTTACCTTTGCCT+TGG | 0.452192 | 3.2:+68599854 | MS.gene29368:CDS |
| AATGAATCCAACGGTGGATC+CGG | 0.453709 | 3.2:-68597652 | None:intergenic |
| AACTGGGATGGGAATCTTCA+GGG | 0.454661 | 3.2:-68600026 | None:intergenic |
| GACAGATACAAACCTGAAAT+GGG | 0.463779 | 3.2:-68607079 | None:intergenic |
| GGCACTGCGGATGCTCATGC+TGG | 0.464273 | 3.2:-68597791 | None:intergenic |
| TCAACAATGGAGTTGGAAAT+CGG | 0.465435 | 3.2:+68601176 | MS.gene29368:CDS |
| TATTAAGAATGATGCTCAAA+AGG | 0.465908 | 3.2:+68598605 | MS.gene29368:CDS |
| TGACACAAGGAAGGGATTAA+CGG | 0.467444 | 3.2:-68601065 | None:intergenic |
| CTAACCAGCAAAGACTCCTT+TGG | 0.467588 | 3.2:-68601254 | None:intergenic |
| AATAACCGAGTTGAAGAAGA+TGG | 0.467922 | 3.2:+68598345 | MS.gene29368:CDS |
| TCATTATCCTGTTTCTCAGC+TGG | 0.468402 | 3.2:+68600380 | MS.gene29368:CDS |
| AGCTTGCAAATTGTCCTTGT+GGG | 0.470724 | 3.2:+68607965 | MS.gene29368:CDS |
| AATGGGAAAATGAGAGAAGA+TGG | 0.470947 | 3.2:-68607062 | None:intergenic |
| GTCAACCCACCATCTCTTGA+AGG | 0.476231 | 3.2:-68599580 | None:intergenic |
| AATAATCCAGAGAGAAACTT+AGG | 0.476614 | 3.2:-68608105 | None:intergenic |
| CCGGCTACGTCTCCGCCAAT+CGG | 0.477239 | 3.2:+68597678 | MS.gene29368:CDS |
| ATCGGAGAAATCGTGGAAAA+CGG | 0.478455 | 3.2:-68597818 | None:intergenic |
| TAATCCCTTCCTTGTGTCAA+AGG | 0.478469 | 3.2:+68601069 | MS.gene29368:CDS |
| TCTGATCATAAAGAATTGCT+TGG | 0.482380 | 3.2:-68608195 | None:intergenic |
| CCTCGACTTTGTGAATATAC+TGG | 0.483091 | 3.2:+68600279 | MS.gene29368:CDS |
| GACGGAATTGAAGAATCTGC+TGG | 0.483629 | 3.2:+68597985 | MS.gene29368:CDS |
| TCAAATCATGAACGGGTCTC+CGG | 0.485919 | 3.2:+68597633 | None:intergenic |
| TTCCCACATCACAGCATATG+AGG | 0.486002 | 3.2:-68607007 | None:intergenic |
| ATGGGTCACTGCAATCTTGT+CGG | 0.487163 | 3.2:-68607043 | None:intergenic |
| CCGATTGGCGGAGACGTAGC+CGG | 0.487980 | 3.2:-68597678 | None:intergenic |
| GGTGATGAGCTTAGTATGAC+CGG | 0.489502 | 3.2:+68597934 | MS.gene29368:CDS |
| TTGCTAACAGAGTAAGTCAC+TGG | 0.489946 | 3.2:+68608019 | MS.gene29368:CDS |
| TGGGTCACTGCAATCTTGTC+GGG | 0.490051 | 3.2:-68607042 | None:intergenic |
| CACCGTTGGATTCATTTCCC+CGG | 0.492803 | 3.2:+68597659 | MS.gene29368:CDS |
| CCAGGTTTCAAATCATGAAC+GGG | 0.494062 | 3.2:+68597626 | None:intergenic |
| AAGAGAGATTGAGAGGGAAG+AGG | 0.494223 | 3.2:+68598035 | MS.gene29368:CDS |
| TTGTTGATAGACCTCAAGAA+TGG | 0.502187 | 3.2:-68601160 | None:intergenic |
| AGTGTGACTTTATATGGAGA+AGG | 0.503252 | 3.2:+68598189 | MS.gene29368:CDS |
| CTCTATATGAACGGATACAT+TGG | 0.503550 | 3.2:-68598700 | None:intergenic |
| TTCCTTGTTTCGCCATTCGA+CGG | 0.504183 | 3.2:-68598768 | None:intergenic |
| GGTGCTCGGTGTTCCCATCA+TGG | 0.504455 | 3.2:-68597770 | None:intergenic |
| TGGGGAGGTGGTGGAACGAA+AGG | 0.504729 | 3.2:+68608039 | MS.gene29368:CDS |
| TTGGGGTAAGAGAGATTGAG+AGG | 0.504905 | 3.2:+68598028 | MS.gene29368:CDS |
| CGGATGCTCATGCTGGTGCT+CGG | 0.506208 | 3.2:-68597784 | None:intergenic |
| AACAGGAAGGCGACATTGAA+AGG | 0.508105 | 3.2:+68607899 | MS.gene29368:intron |
| CCATTCGACGGCAGTACGAT+TGG | 0.509870 | 3.2:-68598756 | None:intergenic |
| AACTCGGACTGAACAAATCA+AGG | 0.514970 | 3.2:+68607992 | MS.gene29368:CDS |
| TTCCATCATCAAAATGCCTA+TGG | 0.515562 | 3.2:-68600212 | None:intergenic |
| CTATGGATTCTCCTGCGGCT+AGG | 0.517815 | 3.2:+68599515 | MS.gene29368:CDS |
| ATGTTCGCTGCCCATTCTTG+AGG | 0.519037 | 3.2:+68601149 | MS.gene29368:CDS |
| GCACACCATCACACATGTGC+TGG | 0.521597 | 3.2:+68600186 | MS.gene29368:CDS |
| AAGAAAAGCCTGAGAAAACA+AGG | 0.524471 | 3.2:+68608133 | MS.gene29368:CDS |
| AGGTCTATCAACAATGGAGT+TGG | 0.525120 | 3.2:+68601169 | MS.gene29368:CDS |
| AGGAGCTTTAGAAGAGGTGA+GGG | 0.525439 | 3.2:+68598449 | MS.gene29368:CDS |
| GTAAGTCACTGGGGAGGTGG+TGG | 0.529380 | 3.2:+68608030 | MS.gene29368:CDS |
| TTGACACAGGTGAACTGGGA+TGG | 0.532191 | 3.2:-68600038 | None:intergenic |
| TATGACCGGGCTTGATTCGT+CGG | 0.532307 | 3.2:+68597948 | MS.gene29368:CDS |
| GTCAGCACCTTGAACTTCAC+AGG | 0.532411 | 3.2:-68598490 | None:intergenic |
| CAGCGCAAGTAACTCCATGA+TGG | 0.534193 | 3.2:+68597756 | MS.gene29368:CDS |
| CCCACCATCTCTTGAAGGCA+TGG | 0.535394 | 3.2:-68599575 | None:intergenic |
| TGCCGTCGAATGGCGAAACA+AGG | 0.540617 | 3.2:+68598766 | MS.gene29368:CDS |
| AACCAAACAAGTGCTCTTGG+AGG | 0.542497 | 3.2:-68599997 | None:intergenic |
| TATCCGAAACTCTTCCACTT+GGG | 0.544990 | 3.2:+68600101 | MS.gene29368:CDS |
| TCATAAAGAATTGCTTGGTA+AGG | 0.546065 | 3.2:-68608190 | None:intergenic |
| GTTGCTTATGAATTCTTCTG+TGG | 0.546531 | 3.2:+68598233 | MS.gene29368:CDS |
| TGACACAGGTGAACTGGGAT+GGG | 0.546656 | 3.2:-68600037 | None:intergenic |
| CAGTCCATGCCTTCAAGAGA+TGG | 0.547134 | 3.2:+68599571 | MS.gene29368:CDS |
| ACTCGGTTATTACTTTCTCG+TGG | 0.547737 | 3.2:-68598333 | None:intergenic |
| TGTTGATAGACCTCAAGAAT+GGG | 0.548493 | 3.2:-68601159 | None:intergenic |
| AGACTCCGATTCGGCGCCGA+AGG | 0.548499 | 3.2:-68597722 | None:intergenic |
| AAGAATAGATAGGATTGAAG+TGG | 0.548698 | 3.2:+68599654 | MS.gene29368:CDS |
| TTCTAACACATTTGTCGAAG+TGG | 0.550102 | 3.2:-68598808 | None:intergenic |
| GAGAGAGACCGTCCGATTGG+CGG | 0.550985 | 3.2:-68597690 | None:intergenic |
| ATAACCGAGTTGAAGAAGAT+GGG | 0.553324 | 3.2:+68598346 | MS.gene29368:CDS |
| GACACAGTTTCGACCATCAC+AGG | 0.553591 | 3.2:-68606951 | None:intergenic |
| AGAGTAAGTCACTGGGGAGG+TGG | 0.554803 | 3.2:+68608027 | MS.gene29368:CDS |
| CTACGTCTCCGCCAATCGGA+CGG | 0.555983 | 3.2:+68597682 | MS.gene29368:CDS |
| CCAATCGTACTGCCGTCGAA+TGG | 0.557605 | 3.2:+68598756 | MS.gene29368:CDS |
| TTTCAGTGAAAGATTGGTTG+GGG | 0.558191 | 3.2:+68599708 | MS.gene29368:CDS |
| TCAACAGAAGACCAAGGCAA+AGG | 0.559003 | 3.2:-68599865 | None:intergenic |
| AAATCCTTATTTAACGAGCA+AGG | 0.559447 | 3.2:+68599832 | MS.gene29368:CDS |
| TGAAAATGGTGGTGAAGTTG+GGG | 0.559938 | 3.2:+68598011 | MS.gene29368:CDS |
| TCTATGTTCAATTATGGGAG+TGG | 0.560344 | 3.2:+68598090 | MS.gene29368:CDS |
| AAACTGCAGTCTTGCCAGCA+AGG | 0.561262 | 3.2:+68600334 | MS.gene29368:CDS |
| ATCCGAAACTCTTCCACTTG+GGG | 0.562470 | 3.2:+68600102 | MS.gene29368:CDS |
| AACTGCAGTCTTGCCAGCAA+GGG | 0.562657 | 3.2:+68600335 | MS.gene29368:CDS |
| TGGAGGACTTGAAAAGAACC+TGG | 0.565349 | 3.2:-68599980 | None:intergenic |
| ACACATGTGCTGGATGCCAT+AGG | 0.566341 | 3.2:+68600196 | MS.gene29368:CDS |
| GTAACGTTCAGACTCCGATT+CGG | 0.567037 | 3.2:-68597731 | None:intergenic |
| ATGGGAAAATGAGAGAAGAT+GGG | 0.568007 | 3.2:-68607061 | None:intergenic |
| ACCAGGTTTCAAATCATGAA+CGG | 0.569251 | 3.2:+68597625 | None:intergenic |
| TTCTGATCGAAAAGAAGAGA+AGG | 0.569956 | 3.2:+68598374 | MS.gene29368:CDS |
| CGGGTCTCCGGATCCACCGT+TGG | 0.570986 | 3.2:+68597645 | MS.gene29368:CDS |
| TGGGGTAAGAGAGATTGAGA+GGG | 0.572142 | 3.2:+68598029 | MS.gene29368:CDS |
| GTAGGTGCAAGGCAGAAAAG+AGG | 0.572743 | 3.2:+68599676 | MS.gene29368:CDS |
| GGATGGTGGAAGTGAGGCAG+AGG | 0.574284 | 3.2:+68598572 | MS.gene29368:CDS |
| TCAGAAGAGTTTCAATATCA+CGG | 0.574397 | 3.2:+68598551 | MS.gene29368:CDS |
| GGCGAGAGAGACCGTCCGAT+TGG | 0.574887 | 3.2:-68597693 | None:intergenic |
| CTTGAAGGCATGGACTGTTG+TGG | 0.575315 | 3.2:-68599565 | None:intergenic |
| TCCATGCCTTCAAGAGATGG+TGG | 0.575379 | 3.2:+68599574 | MS.gene29368:CDS |
| AGTTTCAATATCACGGATGG+TGG | 0.576112 | 3.2:+68598558 | MS.gene29368:CDS |
| TTATGCAGCACTGCCTGTGA+TGG | 0.576198 | 3.2:+68606938 | MS.gene29368:intron |
| TGTGGAGCGGCAAGGATCAG+TGG | 0.583022 | 3.2:+68599761 | MS.gene29368:CDS |
| AACGGCAGTGACACAAAGCA+TGG | 0.586392 | 3.2:-68601047 | None:intergenic |
| TAGGTGCAAGGCAGAAAAGA+GGG | 0.589230 | 3.2:+68599677 | MS.gene29368:CDS |
| ATCCACATTCTCTATATGAA+CGG | 0.589341 | 3.2:-68598709 | None:intergenic |
| TGTCCTTGTGGGGAACAACT+CGG | 0.589414 | 3.2:+68607976 | MS.gene29368:CDS |
| GAAATCGTGGAAAACGGTAA+CGG | 0.589807 | 3.2:-68597812 | None:intergenic |
| AGCGCAAGTAACTCCATGAT+GGG | 0.590171 | 3.2:+68597757 | MS.gene29368:CDS |
| AATTATGGGAGTGGTTGTGA+TGG | 0.592868 | 3.2:+68598099 | MS.gene29368:CDS |
| ATATCCGAAACTCTTCCACT+TGG | 0.593046 | 3.2:+68600100 | MS.gene29368:CDS |
| AGTCCGAGTTGTTCCCCACA+AGG | 0.593100 | 3.2:-68607979 | None:intergenic |
| ATCCGTTCATATAGAGAATG+TGG | 0.594724 | 3.2:+68598707 | MS.gene29368:CDS |
| TGCTAACAGAGTAAGTCACT+GGG | 0.595733 | 3.2:+68608020 | MS.gene29368:CDS |
| GTGGAGCGGCAAGGATCAGT+GGG | 0.596116 | 3.2:+68599762 | MS.gene29368:CDS |
| GAGGAGCTTTAGAAGAGGTG+AGG | 0.598877 | 3.2:+68598448 | MS.gene29368:CDS |
| TGGGACCTTTGACACAAGGA+AGG | 0.599774 | 3.2:-68601074 | None:intergenic |
| TCTCTTCGCAATAATATCAA+GGG | 0.600962 | 3.2:-68599917 | None:intergenic |
| AGCGCCCAAGAAGAATAGAT+AGG | 0.601446 | 3.2:+68599644 | MS.gene29368:CDS |
| GTAAAAGAAGACAGAGACAC+TGG | 0.602072 | 3.2:-68600066 | None:intergenic |
| ATAGATAGGATTGAAGTGGT+AGG | 0.603119 | 3.2:+68599658 | MS.gene29368:CDS |
| AATCTTGTCGGGCACTACAT+GGG | 0.603819 | 3.2:-68607031 | None:intergenic |
| AAGGTGCAAATCTTGTCAGT+CGG | 0.603859 | 3.2:+68607918 | MS.gene29368:CDS |
| TTCTTGAGGTCTATCAACAA+TGG | 0.605421 | 3.2:+68601163 | MS.gene29368:CDS |
| GCTTGCAAATTGTCCTTGTG+GGG | 0.605716 | 3.2:+68607966 | MS.gene29368:CDS |
| ACGGAATTGAAGAATCTGCT+GGG | 0.609111 | 3.2:+68597986 | MS.gene29368:CDS |
| AATCGATATCGGAGAAATCG+TGG | 0.612894 | 3.2:-68597825 | None:intergenic |
| CAACTCCGACGAATCAAGCC+CGG | 0.613585 | 3.2:-68597953 | None:intergenic |
| TCGGAGTTGATTGGAAATGA+CGG | 0.614440 | 3.2:+68597967 | MS.gene29368:CDS |
| GGATTGAAGTGGTAGGTGCA+AGG | 0.615415 | 3.2:+68599665 | MS.gene29368:CDS |
| CCCACGGAAAACCTAGCCGC+AGG | 0.617776 | 3.2:-68599526 | None:intergenic |
| AAGAGTTTCAATATCACGGA+TGG | 0.617979 | 3.2:+68598555 | MS.gene29368:CDS |
| ACAGAAGAATTCATAAGCAA+CGG | 0.618550 | 3.2:-68598231 | None:intergenic |
| AAGCTTGCAAATTGTCCTTG+TGG | 0.619131 | 3.2:+68607964 | MS.gene29368:CDS |
| GTGATGAGCTTAGTATGACC+GGG | 0.620813 | 3.2:+68597935 | MS.gene29368:CDS |
| GGCATCCAGCACATGTGTGA+TGG | 0.621102 | 3.2:-68600191 | None:intergenic |
| GATTTGATTGATCTGTCCAA+AGG | 0.623813 | 3.2:+68601238 | MS.gene29368:CDS |
| GAGTTTGACACAGGTGAACT+GGG | 0.624280 | 3.2:-68600042 | None:intergenic |
| GTGATATTGAAACTCTTCTG+AGG | 0.628819 | 3.2:-68598549 | None:intergenic |
| ATTCGGCGCCGAAGGAAGAG+CGG | 0.629282 | 3.2:-68597714 | None:intergenic |
| ATGCCTCATATGCTGTGATG+TGG | 0.631218 | 3.2:+68607004 | MS.gene29368:CDS |
| TTTGTACAGACATTTGGCTG+GGG | 0.631863 | 3.2:+68600252 | MS.gene29368:CDS |
| TTACCCCATCTTCTTCAACT+CGG | 0.633162 | 3.2:-68598350 | None:intergenic |
| AAACAAGGAAAATATTAGAG+AGG | 0.634126 | 3.2:+68598781 | MS.gene29368:CDS |
| CCATGCCTTCAAGAGATGGT+GGG | 0.634715 | 3.2:+68599575 | MS.gene29368:CDS |
| CCAGTATATTCACAAAGTCG+AGG | 0.635225 | 3.2:-68600279 | None:intergenic |
| TTCCATCAAATAAATCAATG+AGG | 0.636676 | 3.2:+68600151 | MS.gene29368:CDS |
| TCATAACATGAAGCAAGGCT+GGG | 0.637902 | 3.2:-68601093 | None:intergenic |
| GGAGTCTATGGATTCTCCTG+CGG | 0.638903 | 3.2:+68599510 | MS.gene29368:CDS |
| TCCGAAACTCTTCCACTTGG+GGG | 0.639564 | 3.2:+68600103 | MS.gene29368:CDS |
| AATAAAAGTGTGGAGCGGCA+AGG | 0.641900 | 3.2:+68599753 | MS.gene29368:CDS |
| TTGTACAGACATTTGGCTGG+GGG | 0.642232 | 3.2:+68600253 | MS.gene29368:CDS |
| TAACCGAGTTGAAGAAGATG+GGG | 0.644037 | 3.2:+68598347 | MS.gene29368:CDS |
| TATCACGGATGGTGGAAGTG+AGG | 0.645632 | 3.2:+68598566 | MS.gene29368:CDS |
| GACACTCATAACATGAAGCA+AGG | 0.645816 | 3.2:-68601098 | None:intergenic |
| TGCCTCATATGCTGTGATGT+GGG | 0.646362 | 3.2:+68607005 | MS.gene29368:CDS |
| ATCAAACATTCTGTTACCCA+CGG | 0.647802 | 3.2:-68599542 | None:intergenic |
| GGGACCTTTGACACAAGGAA+GGG | 0.650238 | 3.2:-68601073 | None:intergenic |
| AGAAAAGCCTGAGAAAACAA+GGG | 0.651830 | 3.2:+68608134 | MS.gene29368:CDS |
| GACACTGGAGAGTTTGACAC+AGG | 0.653199 | 3.2:-68600051 | None:intergenic |
| ACTGGGATGGGAATCTTCAG+GGG | 0.656686 | 3.2:-68600025 | None:intergenic |
| AGGCTGGGACCTTTGACACA+AGG | 0.665035 | 3.2:-68601078 | None:intergenic |
| TATAAAATAAAAGTGTGGAG+CGG | 0.665928 | 3.2:+68599748 | MS.gene29368:CDS |
| ACGGCAGTGACACAAAGCAT+GGG | 0.666612 | 3.2:-68601046 | None:intergenic |
| TGATCGAGGAGCTTTAGAAG+AGG | 0.668259 | 3.2:+68598443 | MS.gene29368:CDS |
| AGGTGCAAGGCAGAAAAGAG+GGG | 0.673940 | 3.2:+68599678 | MS.gene29368:CDS |
| GATGGTGGAAGTGAGGCAGA+GGG | 0.678774 | 3.2:+68598573 | MS.gene29368:CDS |
| GATTGGCGGAGACGTAGCCG+GGG | 0.683318 | 3.2:-68597676 | None:intergenic |
| AGCCGGGGAAATGAATCCAA+CGG | 0.684225 | 3.2:-68597661 | None:intergenic |
| GAGAAAACAAGGGAGCGTCA+AGG | 0.684750 | 3.2:+68608144 | MS.gene29368:CDS |
| CTGTTTATAAAATAAAAGTG+TGG | 0.686064 | 3.2:+68599743 | MS.gene29368:CDS |
| TCGAAAAGAAGAGAAGGACG+CGG | 0.687796 | 3.2:+68598380 | MS.gene29368:CDS |
| GAGCGGCAAGGATCAGTGGG+AGG | 0.690029 | 3.2:+68599765 | MS.gene29368:CDS |
| GCTAAGTGAATTCTATGACG+AGG | 0.707993 | 3.2:+68599459 | MS.gene29368:CDS |
| AACAGAGTAAGTCACTGGGG+AGG | 0.716059 | 3.2:+68608024 | MS.gene29368:CDS |
| TTGGAATTATACGGTGACGA+TGG | 0.720466 | 3.2:+68597913 | MS.gene29368:CDS |
| TGATGGTCGAAACTGTGTCG+AGG | 0.728077 | 3.2:+68606955 | MS.gene29368:CDS |
| GGAAAACGGTAACGGCACTG+CGG | 0.742777 | 3.2:-68597804 | None:intergenic |
| CGGGGAAATGAATCCAACGG+TGG | 0.757927 | 3.2:-68597658 | None:intergenic |
| GCTAACAGAGTAAGTCACTG+GGG | 0.766228 | 3.2:+68608021 | MS.gene29368:CDS |
| TCTGCTGGGAATGAAAATGG+TGG | 0.773508 | 3.2:+68598000 | MS.gene29368:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 68597640 | 68608212 | 68597640 | ID=MS.gene29368 |
| chr3.2 | mRNA | 68597640 | 68608212 | 68597640 | ID=MS.gene29368.t1;Parent=MS.gene29368 |
| chr3.2 | exon | 68597640 | 68598851 | 68597640 | ID=MS.gene29368.t1.exon1;Parent=MS.gene29368.t1 |
| chr3.2 | CDS | 68597640 | 68598851 | 68597640 | ID=cds.MS.gene29368.t1;Parent=MS.gene29368.t1 |
| chr3.2 | exon | 68599445 | 68600434 | 68599445 | ID=MS.gene29368.t1.exon2;Parent=MS.gene29368.t1 |
| chr3.2 | CDS | 68599445 | 68600434 | 68599445 | ID=cds.MS.gene29368.t1;Parent=MS.gene29368.t1 |
| chr3.2 | exon | 68601046 | 68601271 | 68601046 | ID=MS.gene29368.t1.exon3;Parent=MS.gene29368.t1 |
| chr3.2 | CDS | 68601046 | 68601271 | 68601046 | ID=cds.MS.gene29368.t1;Parent=MS.gene29368.t1 |
| chr3.2 | exon | 68606946 | 68607088 | 68606946 | ID=MS.gene29368.t1.exon4;Parent=MS.gene29368.t1 |
| chr3.2 | CDS | 68606946 | 68607088 | 68606946 | ID=cds.MS.gene29368.t1;Parent=MS.gene29368.t1 |
| chr3.2 | exon | 68607904 | 68608212 | 68607904 | ID=MS.gene29368.t1.exon5;Parent=MS.gene29368.t1 |
| chr3.2 | CDS | 68607904 | 68608212 | 68607904 | ID=cds.MS.gene29368.t1;Parent=MS.gene29368.t1 |
| Gene Sequence |
| Protein sequence |
