AlfalfaGEDB | MS.gene056881

M. sativa cultivar XinJiangDaYe / MS.gene056881

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12937.10

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056881.t1	XP_013467977.1	99.2	376	3	0	1	376	1	376	1.60E-225	791.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056881.t1	Q9FVS1	44.7	340	179	5	36	371	13	347	8.5e-82	305.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056881.t1	I3SWK4	99.2	376	3	0	1	376	1	376	1.2e-225	791.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049807	MS.gene056881	0.806015	1.01E-49	-1.69E-46
MS.gene050931	MS.gene056881	0.811474	6.87E-51	-1.69E-46
MS.gene051234	MS.gene056881	0.802943	4.41E-49	-1.69E-46
MS.gene051642	MS.gene056881	0.836468	9.19E-57	-1.69E-46
MS.gene052072	MS.gene056881	0.820476	6.72E-53	-1.69E-46
MS.gene052307	MS.gene056881	0.833766	4.42E-56	-1.69E-46
MS.gene052609	MS.gene056881	0.817928	2.56E-52	-1.69E-46
MS.gene053143	MS.gene056881	0.80228	6.05E-49	-1.69E-46
MS.gene054004	MS.gene056881	0.810626	1.05E-50	-1.69E-46
MS.gene056881	MS.gene059778	0.801384	9.24E-49	-1.69E-46
MS.gene056881	MS.gene064425	0.810073	1.38E-50	-1.69E-46
MS.gene056881	MS.gene069828	0.852807	3.62E-61	-1.69E-46
MS.gene056881	MS.gene06998	0.805668	1.19E-49	-1.69E-46
MS.gene056881	MS.gene073207	0.815585	8.57E-52	-1.69E-46
MS.gene056881	MS.gene20262	0.801826	7.50E-49	-1.69E-46
MS.gene056881	MS.gene24050	0.835157	1.98E-56	-1.69E-46
MS.gene056881	MS.gene24052	0.834807	2.42E-56	-1.69E-46
MS.gene056881	MS.gene24076	0.80666	7.39E-50	-1.69E-46
MS.gene056881	MS.gene24531	0.838514	2.75E-57	-1.69E-46
MS.gene056881	MS.gene28924	0.850487	1.64E-60	-1.69E-46
MS.gene056881	MS.gene29368	0.801057	1.08E-48	-1.69E-46
MS.gene056881	MS.gene32688	0.834058	3.73E-56	-1.69E-46
MS.gene056881	MS.gene35789	0.813113	3.02E-51	-1.69E-46
MS.gene056881	MS.gene35800	0.816035	6.80E-52	-1.69E-46
MS.gene056881	MS.gene35934	0.811432	7.02E-51	-1.69E-46
MS.gene056881	MS.gene36285	0.801164	1.02E-48	-1.69E-46
MS.gene056881	MS.gene36291	0.804125	2.51E-49	-1.69E-46
MS.gene056881	MS.gene39046	0.80536	1.39E-49	-1.69E-46
MS.gene056881	MS.gene39124	0.809856	1.54E-50	-1.69E-46
MS.gene056881	MS.gene42653	0.836991	6.76E-57	-1.69E-46
MS.gene056881	MS.gene45537	0.814597	1.42E-51	-1.69E-46
MS.gene056881	MS.gene46305	0.830579	2.71E-55	-1.69E-46
MS.gene056881	MS.gene47601	0.8292	5.88E-55	-1.69E-46
MS.gene056881	MS.gene47674	0.80451	2.09E-49	-1.69E-46
MS.gene056881	MS.gene49383	0.814726	1.33E-51	-1.69E-46
MS.gene056881	MS.gene49818	0.803943	2.74E-49	-1.69E-46
MS.gene056881	MS.gene50543	0.801021	1.10E-48	-1.69E-46
MS.gene056881	MS.gene52170	0.830118	3.52E-55	-1.69E-46
MS.gene056881	MS.gene54747	0.830952	2.20E-55	-1.69E-46
MS.gene056881	MS.gene58058	-0.818415	1.98E-52	-1.69E-46
MS.gene056881	MS.gene59134	0.810638	1.04E-50	-1.69E-46
MS.gene056881	MS.gene60978	0.855427	6.36E-62	-1.69E-46
MS.gene056881	MS.gene61117	0.823675	1.22E-53	-1.69E-46
MS.gene056881	MS.gene61153	0.829024	6.49E-55	-1.69E-46
MS.gene056881	MS.gene63930	0.838418	2.91E-57	-1.69E-46
MS.gene056881	MS.gene67008	0.800646	1.31E-48	-1.69E-46
MS.gene056881	MS.gene67010	0.812323	4.49E-51	-1.69E-46
MS.gene056881	MS.gene67881	0.806012	1.01E-49	-1.69E-46
MS.gene056881	MS.gene69097	0.803185	3.93E-49	-1.69E-46
MS.gene056881	MS.gene69820	0.838918	2.16E-57	-1.69E-46
MS.gene056881	MS.gene71236	0.810959	8.89E-51	-1.69E-46
MS.gene056881	MS.gene71994	0.810398	1.18E-50	-1.69E-46
MS.gene056881	MS.gene74235	0.80952	1.82E-50	-1.69E-46
MS.gene056881	MS.gene75507	0.802008	6.88E-49	-1.69E-46
MS.gene056881	MS.gene78363	0.805988	1.02E-49	-1.69E-46
MS.gene056881	MS.gene79095	0.814619	1.40E-51	-1.69E-46
MS.gene056881	MS.gene80201	0.83368	4.64E-56	-1.69E-46
MS.gene056881	MS.gene81751	0.922795	6.17E-89	-1.69E-46
MS.gene056881	MS.gene83122	0.814175	1.76E-51	-1.69E-46
MS.gene056881	MS.gene85610	0.812175	4.84E-51	-1.69E-46
MS.gene056881	MS.gene87292	0.816871	4.42E-52	-1.69E-46
MS.gene056881	MS.gene87891	0.818682	1.73E-52	-1.69E-46
MS.gene056881	MS.gene88032	0.840766	7.14E-58	-1.69E-46
MS.gene056881	MS.gene88927	0.825674	4.12E-54	-1.69E-46
MS.gene056881	MS.gene90121	0.801787	7.64E-49	-1.69E-46
MS.gene056881	MS.gene91203	0.839439	1.58E-57	-1.69E-46
MS.gene056881	MS.gene91307	0.800702	1.27E-48	-1.69E-46
MS.gene056881	MS.gene93728	0.831679	1.46E-55	-1.69E-46
MS.gene056881	MS.gene96211	0.830956	2.19E-55	-1.69E-46
MS.gene056881	MS.gene96228	0.811757	5.97E-51	-1.69E-46
MS.gene056881	MS.gene98075	0.800308	1.53E-48	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene75067	MS.gene056881	PPI
MS.gene056881	MS.gene071037	PPI
MS.gene056881	MS.gene024275	PPI
MS.gene056881	MS.gene009311	PPI
MS.gene071039	MS.gene056881	PPI
MS.gene52540	MS.gene056881	PPI
MS.gene03004	MS.gene056881	PPI
MS.gene056881	MS.gene024343	PPI
MS.gene056881	MS.gene98671	PPI
MS.gene056881	MS.gene05311	PPI
MS.gene056881	MS.gene42889	PPI
MS.gene024341	MS.gene056881	PPI
MS.gene056881	MS.gene005636	PPI
MS.gene59977	MS.gene056881	PPI
MS.gene42891	MS.gene056881	PPI
MS.gene056881	MS.gene53925	PPI
MS.gene33922	MS.gene056881	PPI
MS.gene056881	MS.gene012753	PPI
MS.gene95088	MS.gene056881	PPI
MS.gene98670	MS.gene056881	PPI
MS.gene056881	MS.gene98673	PPI
MS.gene75065	MS.gene056881	PPI
MS.gene056881	MS.gene67877	PPI
MS.gene056881	MS.gene43440	PPI
MS.gene056881	MS.gene47120	PPI
MS.gene056881	MS.gene42887	PPI
MS.gene064044	MS.gene056881	PPI
MS.gene056881	MS.gene42893	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056881.t1	MTR_1g059840	99.202	376	3	0	1	376	1	376	0.0	778
MS.gene056881.t1	MTR_7g104790	64.187	363	119	6	19	374	41	399	2.04e-165	469
MS.gene056881.t1	MTR_7g104790	64.187	363	119	6	19	374	17	375	1.02e-164	466
MS.gene056881.t1	MTR_7g104785	58.824	357	139	4	19	373	18	368	2.27e-146	419
MS.gene056881.t1	MTR_7g104760	58.865	141	40	2	215	354	16	139	3.69e-48	160
MS.gene056881.t1	MTR_2g020080	30.769	247	133	9	76	306	8	232	1.66e-23	99.4
MS.gene056881.t1	MTR_2g034630	26.875	320	169	13	37	351	73	332	2.25e-19	88.6
MS.gene056881.t1	MTR_2g015760	28.070	171	114	4	34	198	13	180	1.36e-13	71.2
MS.gene056881.t1	MTR_3g114990	21.574	343	207	11	36	327	24	355	9.22e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056881.t1	AT1G57790	44.706	340	179	5	36	371	13	347	1.34e-98	297
MS.gene056881.t1	AT3G56470	43.860	342	178	4	34	372	27	357	1.23e-95	290
MS.gene056881.t1	AT4G00893	42.700	363	194	7	17	371	26	382	3.64e-95	289
MS.gene056881.t1	AT4G12370	44.702	302	155	6	83	375	1	299	1.70e-81	251
MS.gene056881.t1	AT4G10660	42.997	307	160	5	70	364	9	312	4.08e-78	243
MS.gene056881.t1	AT1G49360	36.712	365	187	15	39	373	8	358	3.15e-63	207
MS.gene056881.t1	AT1G49360	36.712	365	187	15	39	373	8	358	3.15e-63	207
MS.gene056881.t1	AT1G49360	36.712	365	187	15	39	373	8	358	3.15e-63	207
MS.gene056881.t1	AT1G49360	36.712	365	187	15	39	373	111	461	9.55e-63	208
MS.gene056881.t1	AT1G49360	36.712	365	187	15	39	373	88	438	1.03e-62	207
MS.gene056881.t1	AT3G18720	36.390	349	182	11	39	371	52	376	1.21e-56	190
MS.gene056881.t1	AT4G10695	40.265	226	131	2	48	269	1	226	9.61e-55	180
MS.gene056881.t1	AT4G10695	40.265	226	131	2	48	269	1	226	9.61e-55	180
MS.gene056881.t1	AT4G12382	47.619	126	66	0	35	160	9	134	3.35e-39	137
MS.gene056881.t1	AT4G12382	47.619	126	66	0	35	160	9	134	3.35e-39	137
MS.gene056881.t1	AT4G10700	47.934	121	56	2	255	369	119	238	1.32e-28	112
MS.gene056881.t1	AT4G10700	43.373	83	47	0	69	151	8	90	3.63e-20	89.0
MS.gene056881.t1	AT2G44735	43.396	159	79	7	136	287	110	264	5.05e-28	113
MS.gene056881.t1	AT4G22035	32.800	125	79	3	35	155	12	135	1.85e-11	63.9
MS.gene056881.t1	AT4G22660	31.783	129	72	3	34	150	8	132	5.75e-11	63.9

Find 82 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCATACCACTGACCAAATTT+TGG	0.144092	1.1:+45640706	None:intergenic
TGGTCTAACTTGAAAATAAT+AGG	0.240703	1.1:+45640124	None:intergenic
TTGATAGTCTCCCGAGTAAA+AGG	0.263964	1.1:+45640550	None:intergenic
CATATCTCGTTTAGCCTTAG+AGG	0.269854	1.1:-45640821	MS.gene056881:CDS
AGAGGTGGAACATGATAATT+TGG	0.306104	1.1:-45640890	MS.gene056881:CDS
TGACAAAAGGCAGACGGTTT+TGG	0.312961	1.1:+45640371	None:intergenic
GTTTCTTGTCTTCTCATTCA+AGG	0.344326	1.1:-45640045	MS.gene056881:CDS
GGTCTAACTTGAAAATAATA+GGG	0.354290	1.1:+45640125	None:intergenic
CTCGTAAGCAGTGGCATGAC+TGG	0.366506	1.1:-45639919	MS.gene056881:CDS
TCAATCCATATGCTTTCAAA+AGG	0.390242	1.1:+45639884	None:intergenic
ATCATTTCTAATAGTTCAGC+AGG	0.392094	1.1:+45640844	None:intergenic
AGCACGGACATTGTCCTCTA+AGG	0.396495	1.1:+45640807	None:intergenic
ATTGAGTTTCCTGAGTTGAA+TGG	0.407380	1.1:-45640649	MS.gene056881:CDS
GCCATCAGCACATGTCACCC+TGG	0.425844	1.1:-45640421	MS.gene056881:CDS
CACAAGAGAACGCAACTATC+TGG	0.427646	1.1:+45640503	None:intergenic
CTGAGTCTAACGGGTTGGCT+AGG	0.428305	1.1:-45640301	MS.gene056881:CDS
AGAGTTTGTTACACAAAAGA+TGG	0.432818	1.1:-45640622	MS.gene056881:CDS
CAAGTTAGACCAGGCCTCAA+TGG	0.439625	1.1:-45640113	MS.gene056881:CDS
GAATAGGTCCTCCGCTGCAC+AGG	0.439702	1.1:+45640673	None:intergenic
CTTCTGCGGTTTGCAAGAGT+TGG	0.446022	1.1:-45640786	MS.gene056881:CDS
CTTCCCATTCCATTGAGGCC+TGG	0.447033	1.1:+45640104	None:intergenic
TGAGTCTAACGGGTTGGCTA+GGG	0.453281	1.1:-45640300	MS.gene056881:CDS
CTCAGGAAACTCAATGGAAT+AGG	0.455431	1.1:+45640657	None:intergenic
TTCTCTGGGCATTTGGGTGG+AGG	0.456945	1.1:+45640235	None:intergenic
CATTCAAGGACTGACCTCCT+TGG	0.460684	1.1:-45640031	MS.gene056881:CDS
AATACATCAACCATGGTGAT+TGG	0.465857	1.1:+45640731	None:intergenic
CATCAATTTCGCATAATGTC+AGG	0.471424	1.1:-45641735	None:intergenic
TTGATCCATCTGAACGCACT+TGG	0.477811	1.1:-45640273	MS.gene056881:CDS
TGGTATGTCATCTCAAATCT+TGG	0.481609	1.1:+45640523	None:intergenic
AATAAGCTTGTGTTCTGTAA+TGG	0.484684	1.1:-45640337	MS.gene056881:CDS
GTGCTGATGGCCACAATAGT+AGG	0.487396	1.1:+45640433	None:intergenic
TTCCATATGCTACTGACAAA+AGG	0.491994	1.1:+45640358	None:intergenic
CCATCAGCACATGTCACCCT+GGG	0.492069	1.1:-45640420	MS.gene056881:CDS
AGACCAGGCCTCAATGGAAT+GGG	0.506121	1.1:-45640107	MS.gene056881:CDS
ATGGTTGGTTACTGCTATAC+CGG	0.507693	1.1:-45640603	MS.gene056881:CDS
ATAATTTGGAGCTGCAAACA+TGG	0.512152	1.1:-45640876	MS.gene056881:CDS
TAGCTCTTCCCATTCCATTG+AGG	0.512554	1.1:+45640099	None:intergenic
CCCAGGGTGACATGTGCTGA+TGG	0.513422	1.1:+45640420	None:intergenic
GTTCACCATGCGTACAGCAT+TGG	0.515987	1.1:+45640753	None:intergenic
TCGTAAGCAGTGGCATGACT+GGG	0.517661	1.1:-45639918	MS.gene056881:CDS
ATTCAACTCAGGAAACTCAA+TGG	0.520817	1.1:+45640651	None:intergenic
TAGACCAGGCCTCAATGGAA+TGG	0.520927	1.1:-45640108	MS.gene056881:CDS
ACAGTGAACAATACACAGTC+AGG	0.522970	1.1:+45640469	None:intergenic
ACGCTCCAAGTGCGTTCAGA+TGG	0.530295	1.1:+45640268	None:intergenic
CTGACCTCCTTGGAAATATG+AGG	0.530915	1.1:-45640021	MS.gene056881:CDS
CAATCCATATGCTTTCAAAA+GGG	0.538554	1.1:+45639885	None:intergenic
TTTGTTACACAAAAGATGGT+TGG	0.543077	1.1:-45640618	MS.gene056881:CDS
TATAACATCTCCCTCTTGCT+CGG	0.543615	1.1:+45640174	None:intergenic
GTGACCCACTCAGTTGCCCC+AGG	0.548400	1.1:+45640403	None:intergenic
CAGAAGAGAAGCAACAGAGG+TGG	0.548997	1.1:-45640905	MS.gene056881:CDS
AATACACAGTCAGGTGATGT+TGG	0.549189	1.1:+45640478	None:intergenic
ATTGCCTGAGTCTAACGGGT+TGG	0.555672	1.1:-45640306	MS.gene056881:CDS
GCATGTTAGTCCTACTATTG+TGG	0.555933	1.1:-45640443	MS.gene056881:CDS
TACTGTTCCTCATATTTCCA+AGG	0.557830	1.1:+45640014	None:intergenic
AAATTCTCTGGGCATTTGGG+TGG	0.572307	1.1:+45640232	None:intergenic
ACACTCGATCAGTTCTTGGC+CGG	0.582893	1.1:+45640584	None:intergenic
GAAATTTATGACCGAGCAAG+AGG	0.585940	1.1:-45640185	MS.gene056881:CDS
TCACCCTGGGGCAACTGAGT+GGG	0.589444	1.1:-45640407	MS.gene056881:CDS
CAGTCATGCCACTGCTTACG+AGG	0.597324	1.1:+45639920	None:intergenic
GTCACCCTGGGGCAACTGAG+TGG	0.599763	1.1:-45640408	MS.gene056881:CDS
CTAGCCAACCCGTTAGACTC+AGG	0.605339	1.1:+45640302	None:intergenic
ACTCTAGATCCATTCAACTC+AGG	0.606054	1.1:+45640640	None:intergenic
TTTGGAAAATACATCAACCA+TGG	0.609449	1.1:+45640724	None:intergenic
AATAGGTCCTCCGCTGCACA+GGG	0.610369	1.1:+45640674	None:intergenic
CATATGGATTGAACCACCAA+AGG	0.612060	1.1:-45639873	MS.gene056881:CDS
TCTTGCAAACCGCAGAAGCA+CGG	0.620256	1.1:+45640791	None:intergenic
GAGTCTAACGGGTTGGCTAG+GGG	0.622563	1.1:-45640299	MS.gene056881:CDS
TCTATGACCCTGTGCAGCGG+AGG	0.622795	1.1:-45640681	MS.gene056881:CDS
GAGCAGAAGAGAAGCAACAG+AGG	0.625517	1.1:-45640908	MS.gene056881:CDS
GGACAATGTCCGTGCTTCTG+CGG	0.633574	1.1:-45640800	MS.gene056881:CDS
TGCTACTGACAAAAGGCAGA+CGG	0.641521	1.1:+45640365	None:intergenic
TGACCCACTCAGTTGCCCCA+GGG	0.643613	1.1:+45640404	None:intergenic
AATTCTATGACCCTGTGCAG+CGG	0.644847	1.1:-45640684	MS.gene056881:CDS
TGTTGCCAATGCTGTACGCA+TGG	0.644907	1.1:-45640758	MS.gene056881:CDS
AAATTTATGACCGAGCAAGA+GGG	0.650243	1.1:-45640184	MS.gene056881:CDS
GCTACTATCCTCGTAAGCAG+TGG	0.662398	1.1:-45639928	MS.gene056881:CDS
CGTAAGCAGTGGCATGACTG+GGG	0.674467	1.1:-45639917	MS.gene056881:CDS
TGTTCCTCATATTTCCAAGG+AGG	0.678301	1.1:+45640017	None:intergenic
TAATTTGGAGCTGCAAACAT+GGG	0.684242	1.1:-45640875	MS.gene056881:CDS
TCATTTCTAATAGTTCAGCA+GGG	0.696179	1.1:+45640845	None:intergenic
CATCAGCACATGTCACCCTG+GGG	0.702309	1.1:-45640419	MS.gene056881:CDS
GCATGGTGAACCAATCACCA+TGG	0.715864	1.1:-45640741	MS.gene056881:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTTTTTTTTATTCACAAT+TGG	-	chr1.1:45640481-45640500	MS.gene056881:CDS	10.0%
!!!	ATTTTTTTTTATTCACAATT+GGG	-	chr1.1:45640482-45640501	MS.gene056881:CDS	10.0%
!!!	GAATTAAACTAAATTAGTTT+AGG	-	chr1.1:45640240-45640259	MS.gene056881:CDS	15.0%
!!	AAACTAAATGTGTGAAAATT+GGG	-	chr1.1:45639967-45639986	MS.gene056881:CDS	20.0%
!!	TAAACTAAATGTGTGAAAAT+TGG	-	chr1.1:45639966-45639985	MS.gene056881:CDS	20.0%
!!!	AGAATTTTTTCGCAAAAAAT+TGG	-	chr1.1:45641357-45641376	MS.gene056881:intron	20.0%
!!!	TTGATGTATTTTCCAAAATT+TGG	-	chr1.1:45640855-45640874	MS.gene056881:CDS	20.0%
!!!	TTTTCTTTAATCCTTTTACT+CGG	-	chr1.1:45641012-45641031	MS.gene056881:intron	20.0%
!	ACATGCATTTCTGATTATTT+AGG	-	chr1.1:45640622-45640641	MS.gene056881:CDS	25.0%
!	GATAACATAACATAACAACT+AGG	+	chr1.1:45640455-45640474	None:intergenic	25.0%
!	GGTCTAACTTGAAAATAATA+GGG	+	chr1.1:45641451-45641470	None:intergenic	25.0%
!	TGGTCTAACTTGAAAATAAT+AGG	+	chr1.1:45641452-45641471	None:intergenic	25.0%
!!	ACATATGACTTTTACATGAT+TGG	-	chr1.1:45640296-45640315	MS.gene056881:CDS	25.0%
!!	TTATCACATTGATTGCATTA+GGG	-	chr1.1:45640102-45640121	MS.gene056881:CDS	25.0%
!!	TTTATCACATTGATTGCATT+AGG	-	chr1.1:45640101-45640120	MS.gene056881:CDS	25.0%
!!	TTTCTTTAATCCTTTTACTC+GGG	-	chr1.1:45641013-45641032	MS.gene056881:intron	25.0%
!!	TTTTTGCGAAAAAATTCTCT+GGG	+	chr1.1:45641355-45641374	None:intergenic	25.0%
!!!	ATTTTTTCGCAAAAAATTGG+TGG	-	chr1.1:45641360-45641379	MS.gene056881:intron	25.0%
!!!	TATTATTTTCAAGTTAGACC+AGG	-	chr1.1:45641451-45641470	MS.gene056881:intron	25.0%
!!!	TGAAAATTGGGTTTTAATGT+TGG	-	chr1.1:45639979-45639998	MS.gene056881:CDS	25.0%
!!!	TTCTCTAAAGTTCGTTTTTA+TGG	-	chr1.1:45641587-45641606	MS.gene056881:intron	25.0%
!!!	TTTTTTGCGAAAAAATTCTC+TGG	+	chr1.1:45641356-45641375	None:intergenic	25.0%
	AAAAAATTCTCTGGGCATTT+GGG	+	chr1.1:45641347-45641366	None:intergenic	30.0%
	AAACCAAGCTCATTAATTGA+TGG	-	chr1.1:45640366-45640385	MS.gene056881:CDS	30.0%
	AACCAAGCTCATTAATTGAT+GGG	-	chr1.1:45640367-45640386	MS.gene056881:CDS	30.0%
	AATAAGCTTGTGTTCTGTAA+TGG	-	chr1.1:45641236-45641255	MS.gene056881:intron	30.0%
	AATGCTCTTAAAATGCAACA+AGG	+	chr1.1:45640575-45640594	None:intergenic	30.0%
	ATCATTTCTAATAGTTCAGC+AGG	+	chr1.1:45640732-45640751	None:intergenic	30.0%
	ATTGATTGCATTAGGGTTTA+TGG	-	chr1.1:45640109-45640128	MS.gene056881:CDS	30.0%
	CAATCCATATGCTTTCAAAA+GGG	+	chr1.1:45641691-45641710	None:intergenic	30.0%
	TCAATCCATATGCTTTCAAA+AGG	+	chr1.1:45641692-45641711	None:intergenic	30.0%
	TCATTTCTAATAGTTCAGCA+GGG	+	chr1.1:45640731-45640750	None:intergenic	30.0%
	TTTGGAAAATACATCAACCA+TGG	+	chr1.1:45640852-45640871	None:intergenic	30.0%
	TTTGTTACACAAAAGATGGT+TGG	-	chr1.1:45640955-45640974	MS.gene056881:intron	30.0%
!	ATTTTCCAAAATTTGGTCAG+TGG	-	chr1.1:45640862-45640881	MS.gene056881:CDS	30.0%
!	TTTTATTCACAATTGGGTAG+TGG	-	chr1.1:45640488-45640507	MS.gene056881:CDS	30.0%
!!	AGAGTTTGTTACACAAAAGA+TGG	-	chr1.1:45640951-45640970	MS.gene056881:intron	30.0%
!!	TTTTACATGATTGGTTGTGA+TGG	-	chr1.1:45640305-45640324	MS.gene056881:CDS	30.0%
	AAAAACACTCGATCAGTTCT+TGG	+	chr1.1:45640996-45641015	None:intergenic	35.0%
	AAATTTATGACCGAGCAAGA+GGG	-	chr1.1:45641389-45641408	MS.gene056881:intron	35.0%
	AATACATCAACCATGGTGAT+TGG	+	chr1.1:45640845-45640864	None:intergenic	35.0%
	AATCCAGAAAAATCCTTTGG+TGG	+	chr1.1:45641716-45641735	None:intergenic	35.0%
	AGAGGTGGAACATGATAATT+TGG	-	chr1.1:45640683-45640702	MS.gene056881:CDS	35.0%
	ATTCAACTCAGGAAACTCAA+TGG	+	chr1.1:45640925-45640944	None:intergenic	35.0%
	GAAAAAATTCTCTGGGCATT+TGG	+	chr1.1:45641348-45641367	None:intergenic	35.0%
	GAAGAGCTAAAAACACTAGA+TGG	-	chr1.1:45641488-45641507	MS.gene056881:intron	35.0%
	GAGAATCCAGAAAAATCCTT+TGG	+	chr1.1:45641719-45641738	None:intergenic	35.0%
	GTTTCTTGTCTTCTCATTCA+AGG	-	chr1.1:45641528-45641547	MS.gene056881:intron	35.0%
	TACTGTTCCTCATATTTCCA+AGG	+	chr1.1:45641562-45641581	None:intergenic	35.0%
	TGGTATGTCATCTCAAATCT+TGG	+	chr1.1:45641053-45641072	None:intergenic	35.0%
	TTCCATATGCTACTGACAAA+AGG	+	chr1.1:45641218-45641237	None:intergenic	35.0%
	TTCGCAAAAAATTGGTGGAA+GGG	-	chr1.1:45641365-45641384	MS.gene056881:intron	35.0%
	TTTCGCAAAAAATTGGTGGA+AGG	-	chr1.1:45641364-45641383	MS.gene056881:intron	35.0%
!	AGCATTCAAGTGGATTTGTT+CGG	-	chr1.1:45640589-45640608	MS.gene056881:CDS	35.0%
!	ATAATTTGGAGCTGCAAACA+TGG	-	chr1.1:45640697-45640716	MS.gene056881:CDS	35.0%
!	ATTGAGTTTCCTGAGTTGAA+TGG	-	chr1.1:45640924-45640943	MS.gene056881:CDS	35.0%
!	CTTTTATTGCCTGAGTCTAA+CGG	-	chr1.1:45641262-45641281	MS.gene056881:intron	35.0%
!	TAATTTGGAGCTGCAAACAT+GGG	-	chr1.1:45640698-45640717	MS.gene056881:CDS	35.0%
!	TCATACCACTGACCAAATTT+TGG	+	chr1.1:45640870-45640889	None:intergenic	35.0%
!	TTTTATTGCCTGAGTCTAAC+GGG	-	chr1.1:45641263-45641282	MS.gene056881:intron	35.0%
!!	AAGACCCTTTTGAAAGCATA+TGG	-	chr1.1:45641684-45641703	MS.gene056881:intron	35.0%
!!	AATTGGGTAGTGGAAGAATA+TGG	-	chr1.1:45640498-45640517	MS.gene056881:CDS	35.0%
!!!	GCATTTTAAGAGCATTCAAG+TGG	-	chr1.1:45640579-45640598	MS.gene056881:CDS	35.0%
	AATACACAGTCAGGTGATGT+TGG	+	chr1.1:45641098-45641117	None:intergenic	40.0%
	ACAGTGAACAATACACAGTC+AGG	+	chr1.1:45641107-45641126	None:intergenic	40.0%
	ACTCTAGATCCATTCAACTC+AGG	+	chr1.1:45640936-45640955	None:intergenic	40.0%
	CACCCATCAATTAATGAGCT+TGG	+	chr1.1:45640372-45640391	None:intergenic	40.0%
	CTCAGGAAACTCAATGGAAT+AGG	+	chr1.1:45640919-45640938	None:intergenic	40.0%
	GAAATTTATGACCGAGCAAG+AGG	-	chr1.1:45641388-45641407	MS.gene056881:intron	40.0%
	GCATGTTAGTCCTACTATTG+TGG	-	chr1.1:45641130-45641149	MS.gene056881:intron	40.0%
	TATAACATCTCCCTCTTGCT+CGG	+	chr1.1:45641402-45641421	None:intergenic	40.0%
	TCGCAAAAAATTGGTGGAAG+GGG	-	chr1.1:45641366-45641385	MS.gene056881:intron	40.0%
	TGTTCCTCATATTTCCAAGG+AGG	+	chr1.1:45641559-45641578	None:intergenic	40.0%
	TGTTGGATCTCTGTGTAGAA+TGG	-	chr1.1:45639996-45640015	MS.gene056881:CDS	40.0%
!	ATGGTTGGTTACTGCTATAC+CGG	-	chr1.1:45640970-45640989	MS.gene056881:intron	40.0%
!	CATATGGATTGAACCACCAA+AGG	-	chr1.1:45641700-45641719	MS.gene056881:intron	40.0%
!	GAACCACCAAAGGATTTTTC+TGG	-	chr1.1:45641710-45641729	MS.gene056881:intron	40.0%
!	TGCCTTTTGTCAGTAGCATA+TGG	-	chr1.1:45641213-45641232	MS.gene056881:intron	40.0%
!	TTGATAGTCTCCCGAGTAAA+AGG	+	chr1.1:45641026-45641045	None:intergenic	40.0%
!!	CATATCTCGTTTAGCCTTAG+AGG	-	chr1.1:45640752-45640771	MS.gene056881:CDS	40.0%
	AAATTCTCTGGGCATTTGGG+TGG	+	chr1.1:45641344-45641363	None:intergenic	45.0%
	AATTCTATGACCCTGTGCAG+CGG	-	chr1.1:45640889-45640908	MS.gene056881:CDS	45.0%
	CACAAGAGAACGCAACTATC+TGG	+	chr1.1:45641073-45641092	None:intergenic	45.0%
	CTGACCTCCTTGGAAATATG+AGG	-	chr1.1:45641552-45641571	MS.gene056881:intron	45.0%
	TAGCTCTTCCCATTCCATTG+AGG	+	chr1.1:45641477-45641496	None:intergenic	45.0%
	TGCTACTGACAAAAGGCAGA+CGG	+	chr1.1:45641211-45641230	None:intergenic	45.0%
	TGGATCTCTGTGTAGAATGG+TGG	-	chr1.1:45639999-45640018	MS.gene056881:CDS	45.0%
	TTGATCCATCTGAACGCACT+TGG	-	chr1.1:45641300-45641319	MS.gene056881:intron	45.0%
!	TGACAAAAGGCAGACGGTTT+TGG	+	chr1.1:45641205-45641224	None:intergenic	45.0%
!!	ACGCACTTGGAGCGTTTTAT+CGG	-	chr1.1:45641313-45641332	MS.gene056881:intron	45.0%
	ACACTCGATCAGTTCTTGGC+CGG	+	chr1.1:45640992-45641011	None:intergenic	50.0%
	AGACCAGGCCTCAATGGAAT+GGG	-	chr1.1:45641466-45641485	MS.gene056881:intron	50.0%
	AGCACGGACATTGTCCTCTA+AGG	+	chr1.1:45640769-45640788	None:intergenic	50.0%
	CAAGTTAGACCAGGCCTCAA+TGG	-	chr1.1:45641460-45641479	MS.gene056881:intron	50.0%
	CAGAAGAGAAGCAACAGAGG+TGG	-	chr1.1:45640668-45640687	MS.gene056881:CDS	50.0%
	CATTCAAGGACTGACCTCCT+TGG	-	chr1.1:45641542-45641561	MS.gene056881:intron	50.0%
	CTTCTGCGGTTTGCAAGAGT+TGG	-	chr1.1:45640787-45640806	MS.gene056881:CDS	50.0%
	GAGCAGAAGAGAAGCAACAG+AGG	-	chr1.1:45640665-45640684	MS.gene056881:CDS	50.0%
	GCATGGTGAACCAATCACCA+TGG	-	chr1.1:45640832-45640851	MS.gene056881:CDS	50.0%
	GCTACTATCCTCGTAAGCAG+TGG	-	chr1.1:45641645-45641664	MS.gene056881:intron	50.0%
	GTTCACCATGCGTACAGCAT+TGG	+	chr1.1:45640823-45640842	None:intergenic	50.0%
	TAGACCAGGCCTCAATGGAA+TGG	-	chr1.1:45641465-45641484	MS.gene056881:intron	50.0%
	TCGTAAGCAGTGGCATGACT+GGG	-	chr1.1:45641655-45641674	MS.gene056881:intron	50.0%
	TCTTGCAAACCGCAGAAGCA+CGG	+	chr1.1:45640785-45640804	None:intergenic	50.0%
	TGTTGCCAATGCTGTACGCA+TGG	-	chr1.1:45640815-45640834	MS.gene056881:CDS	50.0%
!	ATTGCCTGAGTCTAACGGGT+TGG	-	chr1.1:45641267-45641286	MS.gene056881:intron	50.0%
!	GTGCTGATGGCCACAATAGT+AGG	+	chr1.1:45641143-45641162	None:intergenic	50.0%
!!	TGAGTCTAACGGGTTGGCTA+GGG	-	chr1.1:45641273-45641292	MS.gene056881:intron	50.0%
	AATAGGTCCTCCGCTGCACA+GGG	+	chr1.1:45640902-45640921	None:intergenic	55.0%
	ACGCTCCAAGTGCGTTCAGA+TGG	+	chr1.1:45641308-45641327	None:intergenic	55.0%
	CAGTCATGCCACTGCTTACG+AGG	+	chr1.1:45641656-45641675	None:intergenic	55.0%
	CATCAGCACATGTCACCCTG+GGG	-	chr1.1:45641154-45641173	MS.gene056881:intron	55.0%
	CCATCAGCACATGTCACCCT+GGG	-	chr1.1:45641153-45641172	MS.gene056881:intron	55.0%
	CGTAAGCAGTGGCATGACTG+GGG	-	chr1.1:45641656-45641675	MS.gene056881:intron	55.0%
	CTAGCCAACCCGTTAGACTC+AGG	+	chr1.1:45641274-45641293	None:intergenic	55.0%
	CTCGTAAGCAGTGGCATGAC+TGG	-	chr1.1:45641654-45641673	MS.gene056881:intron	55.0%
	CTTCCCATTCCATTGAGGCC+TGG	+	chr1.1:45641472-45641491	None:intergenic	55.0%
	GGACAATGTCCGTGCTTCTG+CGG	-	chr1.1:45640773-45640792	MS.gene056881:CDS	55.0%
	TTCTCTGGGCATTTGGGTGG+AGG	+	chr1.1:45641341-45641360	None:intergenic	55.0%
!!	CTGAGTCTAACGGGTTGGCT+AGG	-	chr1.1:45641272-45641291	MS.gene056881:intron	55.0%
!!	GAGTCTAACGGGTTGGCTAG+GGG	-	chr1.1:45641274-45641293	MS.gene056881:intron	55.0%
	CCCAGGGTGACATGTGCTGA+TGG	+	chr1.1:45641156-45641175	None:intergenic	60.0%
	GAATAGGTCCTCCGCTGCAC+AGG	+	chr1.1:45640903-45640922	None:intergenic	60.0%
	GCCATCAGCACATGTCACCC+TGG	-	chr1.1:45641152-45641171	MS.gene056881:intron	60.0%
	TCACCCTGGGGCAACTGAGT+GGG	-	chr1.1:45641166-45641185	MS.gene056881:intron	60.0%
	TCTATGACCCTGTGCAGCGG+AGG	-	chr1.1:45640892-45640911	MS.gene056881:CDS	60.0%
	TGACCCACTCAGTTGCCCCA+GGG	+	chr1.1:45641172-45641191	None:intergenic	60.0%
	GTCACCCTGGGGCAACTGAG+TGG	-	chr1.1:45641165-45641184	MS.gene056881:intron	65.0%
	GTGACCCACTCAGTTGCCCC+AGG	+	chr1.1:45641173-45641192	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	45639853	45641742	45639853	ID=MS.gene056881
chr1.1	mRNA	45639853	45641742	45639853	ID=MS.gene056881.t1;Parent=MS.gene056881
chr1.1	exon	45641711	45641742	45641711	ID=MS.gene056881.t1.exon1;Parent=MS.gene056881.t1
chr1.1	CDS	45641711	45641742	45641711	ID=cds.MS.gene056881.t1;Parent=MS.gene056881.t1
chr1.1	exon	45639853	45640951	45639853	ID=MS.gene056881.t1.exon2;Parent=MS.gene056881.t1
chr1.1	CDS	45639853	45640951	45639853	ID=cds.MS.gene056881.t1;Parent=MS.gene056881.t1

Gene Sequence

>MS.gene056881

ATGTCAGGCAAAAAGAGAAGAAAATTGAAATTGTAAGCTACTTCTTCATCAAATCAAATTGTGAATTTTTTATTATAATTCATATATTTCACTTTTTTAATTAATCGATTATTTAAACTAAATGTGTGAAAATTGGGTTTTAATGTTGGATCTCTGTGTAGAATGGTGGATTTAATCTTTTTCATGTTAGATTATTGAATCTGAACTCTGAATTGAACAAAATTGAACAAATTTGCTGATAGTGTATGTTTATCACATTGATTGCATTAGGGTTTATGGATCAAATTAGTGAGATCAGATGTTAGTTGAATACTGTGATGCATGTTTTTTATCTACTAGTTATGTGTTTAATTTTATTAATCTGCTATCATCGTGCTTAATTTTGAAGAATTAAACTAAATTAGTTTAGGATTTAAATACTTTACACTGTCAGATCATTAGAAACATATGACTTTTACATGATTGGTTGTGATGGACTGACAGTGTAAAACTTTTTAAAGTGACAGTGCATAGAAACCAAGCTCATTAATTGATGGGTGTGTTGTTTGTTAATGATTGAGTTTTGACTCAGATTGATATAATTATCACTCTATAGTGTTCCTAGTTGTTATGTTATGTTATCTAATTTAATTTTTTTTTATTCACAATTGGGTAGTGGAAGAATATGGATTCATTAATATGAAGACTTGATAAAGTCACAAAGTTCTAATAATTTTTATCCTTGTTGCATTTTAAGAGCATTCAAGTGGATTTGTTCGGTTGAATTCTTACATGCATTTCTGATTATTTAGGTTAAGTGATACAATTGCTAAGAGCAGAAGAGAAGCAACAGAGGTGGAACATGATAATTTGGAGCTGCAAACATGGGCTGATCTCCCTGCTGAACTATTAGAAATGATCATATCTCGTTTAGCCTTAGAGGACAATGTCCGTGCTTCTGCGGTTTGCAAGAGTTGGAATTTTGTTGCCAATGCTGTACGCATGGTGAACCAATCACCATGGTTGATGTATTTTCCAAAATTTGGTCAGTGGTATGAATTCTATGACCCTGTGCAGCGGAGGACCTATTCCATTGAGTTTCCTGAGTTGAATGGATCTAGAGTTTGTTACACAAAAGATGGTTGGTTACTGCTATACCGGCCAAGAACTGATCGAGTGTTTTTCTTTAATCCTTTTACTCGGGAGACTATCAAAATGCCAAGATTTGAGATGACATACCAGATAGTTGCGTTCTCTTGTGCTCCAACATCACCTGACTGTGTATTGTTCACTGTTAAGCATGTTAGTCCTACTATTGTGGCCATCAGCACATGTCACCCTGGGGCAACTGAGTGGGTCACTGTTAATTACCAAAACCGTCTGCCTTTTGTCAGTAGCATATGGAATAAGCTTGTGTTCTGTAATGGACTCTTTTATTGCCTGAGTCTAACGGGTTGGCTAGGGGTATTTGATCCATCTGAACGCACTTGGAGCGTTTTATCGGTACCTCCACCCAAATGCCCAGAGAATTTTTTCGCAAAAAATTGGTGGAAGGGGAAATTTATGACCGAGCAAGAGGGAGATGTTATAGTAATGTACACATGTTCTAGTGAAAACCCTATTATTTTCAAGTTAGACCAGGCCTCAATGGAATGGGAAGAGCTAAAAACACTAGATGGAGCAACTCTATTTGCTAGTTTCTTGTCTTCTCATTCAAGGACTGACCTCCTTGGAAATATGAGGAACAGTATCTACTTCTCTAAAGTTCGTTTTTATGGAAAGCGTTGCATATCATTCTCTCTTGATGACTATCGCTACTATCCTCGTAAGCAGTGGCATGACTGGGGTGAACAAGACCCTTTTGAAAGCATATGGATTGAACCACCAAAGGATTTTTCTGGATTCTCATGA

Protein sequence

>MS.gene056881.t1

MSGKKRRKLKLLSDTIAKSRREATEVEHDNLELQTWADLPAELLEMIISRLALEDNVRASAVCKSWNFVANAVRMVNQSPWLMYFPKFGQWYEFYDPVQRRTYSIEFPELNGSRVCYTKDGWLLLYRPRTDRVFFFNPFTRETIKMPRFEMTYQIVAFSCAPTSPDCVLFTVKHVSPTIVAISTCHPGATEWVTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPSERTWSVLSVPPPKCPENFFAKNWWKGKFMTEQEGDVIVMYTCSSENPIIFKLDQASMEWEELKTLDGATLFASFLSSHSRTDLLGNMRNSIYFSKVRFYGKRCISFSLDDYRYYPRKQWHDWGEQDPFESIWIEPPKDFSGFS