Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29390.t1 | AFK39377.1 | 93.8 | 418 | 26 | 0 | 31 | 448 | 59 | 476 | 3.40E-198 | 701 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29390.t1 | I3SGI5 | 93.8 | 418 | 26 | 0 | 31 | 448 | 59 | 476 | 2.5e-198 | 701.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053008 | MS.gene29390 | 0.8016 | 8.34E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene29390 | 0.80958 | 1.76E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene29390 | 0.806524 | 7.89E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 108 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATTTGTTGAGTTCTTTC+AGG | 0.164384 | 3.3:-58577023 | None:intergenic |
| CATGCCTTCTAGAAGATTTC+TGG | 0.200653 | 3.3:-58579312 | None:intergenic |
| GCCTCTTCTGTAGCTTCTTC+TGG | 0.265752 | 3.3:-58579257 | None:intergenic |
| CTTATTGATCTATACTTATC+TGG | 0.274374 | 3.3:+58577465 | MS.gene29390:CDS |
| GGTGGCTTTGGTGTTGGTCC+AGG | 0.281454 | 3.3:+58579182 | MS.gene29390:CDS |
| AGTGGAAATACCTTCATCTA+TGG | 0.335384 | 3.3:-58577836 | None:intergenic |
| ACAGGCCCAGCAGATGAAAA+TGG | 0.380870 | 3.3:+58577694 | MS.gene29390:CDS |
| CTATAGTACCAGCCAGCATT+AGG | 0.390043 | 3.3:-58576351 | None:intergenic |
| TGTACCTTTAGATTGCAATA+AGG | 0.395545 | 3.3:+58576416 | MS.gene29390:CDS |
| CAGTTGTGGACTTGTGGGAC+TGG | 0.396053 | 3.3:+58578272 | MS.gene29390:CDS |
| GAGGCGTTAAAGATGTCATT+TGG | 0.400128 | 3.3:+58579275 | MS.gene29390:CDS |
| TTGTTGAGTTCTTTCAGGTT+TGG | 0.403639 | 3.3:-58577018 | None:intergenic |
| CTGCCGATCCAACAAAAGAT+TGG | 0.415464 | 3.3:+58578822 | MS.gene29390:CDS |
| GGCAAGGTTGGTTGGAAGAC+TGG | 0.422436 | 3.3:+58578336 | MS.gene29390:CDS |
| GTTTCCAGTTGTGGACTTGT+GGG | 0.427219 | 3.3:+58578267 | MS.gene29390:CDS |
| AGCTTACAGAAATACTGAAA+TGG | 0.427789 | 3.3:+58577657 | MS.gene29390:intron |
| CAGTCCCACAAGTCCACAAC+TGG | 0.428086 | 3.3:-58578271 | None:intergenic |
| AGAATCTTGCATGGTGGCTT+TGG | 0.433461 | 3.3:+58579170 | MS.gene29390:CDS |
| AAAAGATAGGGTGGCAAGGT+TGG | 0.437322 | 3.3:+58578324 | MS.gene29390:CDS |
| GATGAAAATCACTTAGCTAA+TGG | 0.440488 | 3.3:+58577808 | MS.gene29390:CDS |
| TGCCGATCCAACAAAAGATT+GGG | 0.443261 | 3.3:+58578823 | MS.gene29390:CDS |
| TACCATTCCGACGGCGGTGG+AGG | 0.443987 | 3.3:-58577353 | None:intergenic |
| GCTTCTTCTGGACAAGCATC+AGG | 0.444285 | 3.3:-58579245 | None:intergenic |
| AGTTTCCAGTTGTGGACTTG+TGG | 0.448878 | 3.3:+58578266 | MS.gene29390:CDS |
| CTTACCATCCCCTGCTTCCT+CGG | 0.451447 | 3.3:-58577123 | None:intergenic |
| GCTTACAGAAATACTGAAAT+GGG | 0.451792 | 3.3:+58577658 | MS.gene29390:intron |
| GAGGATTGTTCTTCCTTCCT+CGG | 0.454567 | 3.3:+58577062 | MS.gene29390:CDS |
| TATGCCAGAAATCTTCTAGA+AGG | 0.454930 | 3.3:+58579308 | MS.gene29390:CDS |
| CATTGAATCAAGGAAAGATC+TGG | 0.457483 | 3.3:+58578237 | MS.gene29390:CDS |
| GGACTTGTGGGACTGGGAAA+TGG | 0.461025 | 3.3:+58578279 | MS.gene29390:CDS |
| AATCTGGTACGCGTCAAAAC+AGG | 0.461723 | 3.3:+58578442 | MS.gene29390:CDS |
| TTGAGATGTACTTCGCAGAT+AGG | 0.463041 | 3.3:-58578421 | None:intergenic |
| GTTTATTACAAATTTGAGGA+TGG | 0.471555 | 3.3:+58576387 | MS.gene29390:CDS |
| TTGCATGGTGGCTTTGGTGT+TGG | 0.471657 | 3.3:+58579176 | MS.gene29390:CDS |
| CGGTCAAGGTTCCTATCTGT+TGG | 0.472224 | 3.3:-58577103 | None:intergenic |
| GTGGCTTTGGTGTTGGTCCA+GGG | 0.472256 | 3.3:+58579183 | MS.gene29390:CDS |
| TTCAATTTCGTTTCCGAGGA+AGG | 0.473128 | 3.3:-58577075 | None:intergenic |
| GATAGGGTGGCAAGGTTGGT+TGG | 0.473323 | 3.3:+58578328 | MS.gene29390:CDS |
| ATCTTCTAGAAGGCATGGGC+TGG | 0.474580 | 3.3:+58579318 | MS.gene29390:CDS |
| GGAACCTTGACCGAGGAAGC+AGG | 0.477060 | 3.3:+58577113 | MS.gene29390:CDS |
| ATTGAAACTAACCAACAGAT+AGG | 0.478031 | 3.3:+58577092 | MS.gene29390:CDS |
| TCCACAAGTTGGACTGTTCG+TGG | 0.482684 | 3.3:-58577327 | None:intergenic |
| GGTCCAGGGCAGAAGAATCT+TGG | 0.483376 | 3.3:+58579197 | MS.gene29390:CDS |
| CTGCGAAGTACATCTCAATC+TGG | 0.490416 | 3.3:+58578426 | MS.gene29390:CDS |
| ACACCAAGATTCTTCTGCCC+TGG | 0.490581 | 3.3:-58579200 | None:intergenic |
| TGGTGTTTATTACAAATTTG+AGG | 0.498375 | 3.3:+58576383 | MS.gene29390:CDS |
| AGTTGTGGACTTGTGGGACT+GGG | 0.509025 | 3.3:+58578273 | MS.gene29390:CDS |
| AAGTCAGCTTTCTGTATCCA+AGG | 0.510213 | 3.3:+58578958 | MS.gene29390:CDS |
| TTTGTAATAAACACCATCAC+TGG | 0.513294 | 3.3:-58576376 | None:intergenic |
| ATCCCCTGCTTCCTCGGTCA+AGG | 0.516110 | 3.3:-58577117 | None:intergenic |
| ACCCTCCACCGCCGTCGGAA+TGG | 0.516570 | 3.3:+58577351 | MS.gene29390:CDS |
| CCTACCTTATTGCAATCTAA+AGG | 0.519692 | 3.3:-58576420 | None:intergenic |
| ATCATGATCCTAATGCTGGC+TGG | 0.520822 | 3.3:+58576343 | MS.gene29390:CDS |
| TTATATCCATCGGTTTCCAC+GGG | 0.522689 | 3.3:-58577531 | None:intergenic |
| GTTATATCCATCGGTTTCCA+CGG | 0.523283 | 3.3:-58577532 | None:intergenic |
| AACTTCTCATTAGAAGCTGA+TGG | 0.525343 | 3.3:+58577552 | MS.gene29390:CDS |
| CAGAAATCTTCTAGAAGGCA+TGG | 0.525345 | 3.3:+58579313 | MS.gene29390:CDS |
| GGATACCATTCCGACGGCGG+TGG | 0.526658 | 3.3:-58577356 | None:intergenic |
| GGAATTTCAGTTGAAGTGGA+AGG | 0.529631 | 3.3:-58578908 | None:intergenic |
| ATGGGAGGTGACTGGACCAC+AGG | 0.535287 | 3.3:+58577676 | MS.gene29390:CDS |
| ATGGTCAAGTCATTGAATCA+AGG | 0.539010 | 3.3:+58578227 | MS.gene29390:CDS |
| TAATGAGAAGTTATATCCAT+CGG | 0.540938 | 3.3:-58577541 | None:intergenic |
| GAAGCCACATATCTCGCACT+TGG | 0.541343 | 3.3:-58578782 | None:intergenic |
| TCTAGAAGGCATGGGCTGGA+AGG | 0.551981 | 3.3:+58579322 | MS.gene29390:CDS |
| ATACTGAAATGGGAGGTGAC+TGG | 0.558400 | 3.3:+58577668 | MS.gene29390:CDS |
| TTTCAACAGAGGAGATAGAT+GGG | 0.558751 | 3.3:-58578381 | None:intergenic |
| ACCATTCCGACGGCGGTGGA+GGG | 0.559175 | 3.3:-58577352 | None:intergenic |
| AGATTTCTGGCATAACTACC+TGG | 0.559707 | 3.3:-58579299 | None:intergenic |
| TTGGATACAGAAAGCTGACT+TGG | 0.564129 | 3.3:-58578956 | None:intergenic |
| GAACCTTGACCGAGGAAGCA+GGG | 0.564978 | 3.3:+58577114 | MS.gene29390:CDS |
| AAACCCAAGTGCGAGATATG+TGG | 0.566437 | 3.3:+58578778 | MS.gene29390:CDS |
| AATGGAAGTTCCATAGATGA+AGG | 0.570140 | 3.3:+58577826 | MS.gene29390:CDS |
| GGTGGAGGGTTTCCACAAGT+TGG | 0.574803 | 3.3:-58577338 | None:intergenic |
| TCCACGAACAGTCCAACTTG+TGG | 0.576946 | 3.3:+58577326 | MS.gene29390:CDS |
| GTGGGTAAATCTTTCGCTGT+AGG | 0.578293 | 3.3:-58578929 | None:intergenic |
| TGGAAACCCTCCACCGCCGT+CGG | 0.581504 | 3.3:+58577346 | MS.gene29390:CDS |
| GATGCTTATCAAGTAGAAGA+AGG | 0.583550 | 3.3:+58577763 | MS.gene29390:CDS |
| TCCAGAAGAAGCTACAGAAG+AGG | 0.585922 | 3.3:+58579256 | MS.gene29390:CDS |
| TGTAGGAATTTCAGTTGAAG+TGG | 0.593062 | 3.3:-58578912 | None:intergenic |
| AGAAATCTTCTAGAAGGCAT+GGG | 0.593920 | 3.3:+58579314 | MS.gene29390:CDS |
| AGAAGGCATGGGCTGGAAGG+AGG | 0.595542 | 3.3:+58579325 | MS.gene29390:CDS |
| AAGCCACATATCTCGCACTT+GGG | 0.596356 | 3.3:-58578781 | None:intergenic |
| TAGTTTCAATTTCGTTTCCG+AGG | 0.598650 | 3.3:-58577079 | None:intergenic |
| ATGGAAAAGATAGGGTGGCA+AGG | 0.600283 | 3.3:+58578320 | MS.gene29390:CDS |
| ACAGACCCCGTGGAAACCGA+TGG | 0.614452 | 3.3:+58577525 | MS.gene29390:CDS |
| AACCTTGACCGAGGAAGCAG+GGG | 0.617715 | 3.3:+58577115 | MS.gene29390:CDS |
| TTAAAGATGTCATTTGGACC+AGG | 0.619131 | 3.3:+58579281 | MS.gene29390:CDS |
| GGGCAGAAGAATCTTGGTGT+CGG | 0.634541 | 3.3:+58579203 | MS.gene29390:CDS |
| GAAAGCTGACTTGGCAACGT+GGG | 0.634656 | 3.3:-58578947 | None:intergenic |
| TTGACCGAGGAAGCAGGGGA+TGG | 0.636386 | 3.3:+58577119 | MS.gene29390:CDS |
| ATCAAGTAGAAGAAGGTGAG+TGG | 0.644722 | 3.3:+58577770 | MS.gene29390:CDS |
| AATACAAGACATTAACAATG+AGG | 0.647640 | 3.3:+58577040 | MS.gene29390:CDS |
| AAAAGATGGAAAAGATAGGG+TGG | 0.647950 | 3.3:+58578315 | MS.gene29390:CDS |
| GCTGAAAGAAGAATCTTGCA+TGG | 0.649213 | 3.3:+58579161 | MS.gene29390:CDS |
| TGGTACTATAGCACCAGTGA+TGG | 0.651452 | 3.3:+58576363 | MS.gene29390:CDS |
| TTTATATTAGATGATAACTG+AGG | 0.658562 | 3.3:-58578851 | None:intergenic |
| ACAAGACATTAACAATGAGG+AGG | 0.664360 | 3.3:+58577043 | MS.gene29390:CDS |
| TGAGTGGATTCCAGATCCAG+AGG | 0.665421 | 3.3:+58577786 | MS.gene29390:CDS |
| TACAGAAATACTGAAATGGG+AGG | 0.669814 | 3.3:+58577661 | MS.gene29390:CDS |
| GAAGGAGGATACCATTCCGA+CGG | 0.673337 | 3.3:-58577362 | None:intergenic |
| GGAGGATACCATTCCGACGG+CGG | 0.673907 | 3.3:-58577359 | None:intergenic |
| AGAAAGCTGACTTGGCAACG+TGG | 0.688129 | 3.3:-58578948 | None:intergenic |
| ATGTCAATATAGAGATCGCG+CGG | 0.698371 | 3.3:+58579139 | MS.gene29390:CDS |
| GAAAGAAGAATCTTGCATGG+TGG | 0.712797 | 3.3:+58579164 | MS.gene29390:CDS |
| TGGTCAAACAATCTGCAAAG+CGG | 0.722667 | 3.3:+58578356 | MS.gene29390:CDS |
| TATATCCATCGGTTTCCACG+GGG | 0.724216 | 3.3:-58577530 | None:intergenic |
| ACAGATAGGAACCTTGACCG+AGG | 0.745062 | 3.3:+58577106 | MS.gene29390:CDS |
| TGATACAGTGACAGACCCCG+TGG | 0.770896 | 3.3:+58577515 | MS.gene29390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATCAAATTATACA+TGG | - | chr3.3:58578548-58578567 | None:intergenic | 10.0% |
| !! | ATATAATCATCAATAGAAAA+AGG | - | chr3.3:58577397-58577416 | None:intergenic | 15.0% |
| !!! | TAAATTTCATTTTAGAATCA+TGG | + | chr3.3:58578597-58578616 | MS.gene29390:intron | 15.0% |
| !! | AGTTACAATTTATAAGCAAT+AGG | + | chr3.3:58578623-58578642 | MS.gene29390:intron | 20.0% |
| !! | ATCAAACATATGAACAAAAT+AGG | - | chr3.3:58578157-58578176 | None:intergenic | 20.0% |
| !! | GAAATTTACGTATAATAACA+AGG | - | chr3.3:58578585-58578604 | None:intergenic | 20.0% |
| !! | GTTACAATTTATAAGCAATA+GGG | + | chr3.3:58578624-58578643 | MS.gene29390:intron | 20.0% |
| !! | TTTATATTAGATGATAACTG+AGG | - | chr3.3:58578854-58578873 | None:intergenic | 20.0% |
| !! | TTTCAAAATAAAGCTGTATT+GGG | + | chr3.3:58578667-58578686 | MS.gene29390:intron | 20.0% |
| !!! | CAAAAATAGTATTTTCAAGT+TGG | + | chr3.3:58576929-58576948 | MS.gene29390:intron | 20.0% |
| !!! | TAGGAGTATTCAATAAAATA+CGG | - | chr3.3:58577177-58577196 | None:intergenic | 20.0% |
| !!! | TATAAGTTGAAAACAACATA+TGG | - | chr3.3:58576557-58576576 | None:intergenic | 20.0% |
| !!! | TATTATTCATAAGCTTGTTA+AGG | - | chr3.3:58576801-58576820 | None:intergenic | 20.0% |
| !!! | TGCACATCATAATAATTTTT+TGG | - | chr3.3:58577958-58577977 | None:intergenic | 20.0% |
| ! | AAAAATAAGTCAATCCAAAC+AGG | + | chr3.3:58576864-58576883 | MS.gene29390:intron | 25.0% |
| ! | AATACAAGACATTAACAATG+AGG | + | chr3.3:58577040-58577059 | MS.gene29390:CDS | 25.0% |
| ! | AATACGGTAATAAAGTTTGA+AGG | - | chr3.3:58577161-58577180 | None:intergenic | 25.0% |
| ! | AATTATTATGATGTGCACTA+TGG | + | chr3.3:58577961-58577980 | MS.gene29390:intron | 25.0% |
| ! | ACAGAAAAGTTACATAAGTT+AGG | - | chr3.3:58577584-58577603 | None:intergenic | 25.0% |
| ! | ACTAGATTACTGAATAAACA+AGG | - | chr3.3:58578050-58578069 | None:intergenic | 25.0% |
| ! | ATAAGAGATGTAAATGACTT+AGG | - | chr3.3:58576891-58576910 | None:intergenic | 25.0% |
| ! | ATTATTATGATGTGCACTAT+GGG | + | chr3.3:58577962-58577981 | MS.gene29390:intron | 25.0% |
| ! | CAAAAAAGATGGAAAAGATA+GGG | + | chr3.3:58578312-58578331 | MS.gene29390:CDS | 25.0% |
| ! | CTTATTGATCTATACTTATC+TGG | + | chr3.3:58577465-58577484 | MS.gene29390:CDS | 25.0% |
| ! | GGTATACTGCAAAAATAAAT+GGG | + | chr3.3:58577983-58578002 | MS.gene29390:intron | 25.0% |
| ! | GTTTATTACAAATTTGAGGA+TGG | + | chr3.3:58576387-58576406 | MS.gene29390:CDS | 25.0% |
| ! | GTTTCAAAATAAAGCTGTAT+TGG | + | chr3.3:58578666-58578685 | MS.gene29390:intron | 25.0% |
| ! | TAAGAGATGTAAATGACTTA+GGG | - | chr3.3:58576890-58576909 | None:intergenic | 25.0% |
| ! | TAATGAGAAGTTATATCCAT+CGG | - | chr3.3:58577544-58577563 | None:intergenic | 25.0% |
| ! | TGGTGTTTATTACAAATTTG+AGG | + | chr3.3:58576383-58576402 | MS.gene29390:CDS | 25.0% |
| ! | TTAAAATTAAGCTAACCAAC+AGG | + | chr3.3:58577430-58577449 | MS.gene29390:intron | 25.0% |
| !! | ATTAAGTTGCTTATCCAAAA+AGG | + | chr3.3:58576651-58576670 | MS.gene29390:intron | 25.0% |
| !! | TATATTGACATTTTATCTGC+TGG | - | chr3.3:58579130-58579149 | None:intergenic | 25.0% |
| !! | TCTAAATTTCTTTTCAACAG+AGG | - | chr3.3:58578395-58578414 | None:intergenic | 25.0% |
| !! | TGTTTGATTTATACCATTAC+AGG | + | chr3.3:58578169-58578188 | MS.gene29390:intron | 25.0% |
| !! | TTAAGTTGCTTATCCAAAAA+GGG | + | chr3.3:58576652-58576671 | MS.gene29390:intron | 25.0% |
| AAGGTTCAAGTAACTAAGAA+GGG | + | chr3.3:58578017-58578036 | MS.gene29390:intron | 30.0% | |
| AGCTTACAGAAATACTGAAA+TGG | + | chr3.3:58577657-58577676 | MS.gene29390:intron | 30.0% | |
| ATTGAAACTAACCAACAGAT+AGG | + | chr3.3:58577092-58577111 | MS.gene29390:CDS | 30.0% | |
| ATTTGAACTTATCTATCCAC+TGG | + | chr3.3:58576476-58576495 | MS.gene29390:intron | 30.0% | |
| CCAAAAAAGATGGAAAAGAT+AGG | + | chr3.3:58578311-58578330 | MS.gene29390:CDS | 30.0% | |
| GATGAAAATCACTTAGCTAA+TGG | + | chr3.3:58577808-58577827 | MS.gene29390:CDS | 30.0% | |
| GATGTACTGAATTACATGAA+GGG | - | chr3.3:58579053-58579072 | None:intergenic | 30.0% | |
| GCTTACAGAAATACTGAAAT+GGG | + | chr3.3:58577658-58577677 | MS.gene29390:intron | 30.0% | |
| GGGTATACTGCAAAAATAAA+TGG | + | chr3.3:58577982-58578001 | MS.gene29390:intron | 30.0% | |
| TACAAAGACATCTACTTAGA+AGG | - | chr3.3:58577291-58577310 | None:intergenic | 30.0% | |
| TCATCAATAGAAAAAGGATG+TGG | - | chr3.3:58577391-58577410 | None:intergenic | 30.0% | |
| TCATTCTATCTCTATGTACT+TGG | + | chr3.3:58577922-58577941 | MS.gene29390:intron | 30.0% | |
| TCTTGTTCGAAGAAGAAAAA+TGG | + | chr3.3:58578194-58578213 | MS.gene29390:CDS | 30.0% | |
| TGATGTACTGAATTACATGA+AGG | - | chr3.3:58579054-58579073 | None:intergenic | 30.0% | |
| TGTACCTTTAGATTGCAATA+AGG | + | chr3.3:58576416-58576435 | MS.gene29390:CDS | 30.0% | |
| TTACTCTTGTATTTGCTTAC+TGG | + | chr3.3:58578473-58578492 | MS.gene29390:intron | 30.0% | |
| TTTGTAATAAACACCATCAC+TGG | - | chr3.3:58576379-58576398 | None:intergenic | 30.0% | |
| ! | CCTATCTTTTCCATCTTTTT+TGG | - | chr3.3:58578314-58578333 | None:intergenic | 30.0% |
| ! | TATTGTCATGCTCTTTTATC+AGG | + | chr3.3:58578737-58578756 | MS.gene29390:intron | 30.0% |
| ! | TGTATTTGTTGAGTTCTTTC+AGG | - | chr3.3:58577026-58577045 | None:intergenic | 30.0% |
| ! | TTTTATCATGATCCTAATGC+TGG | + | chr3.3:58576339-58576358 | MS.gene29390:CDS | 30.0% |
| !!! | AGTTTTATTGCTTGTGTTTC+AGG | + | chr3.3:58576959-58576978 | MS.gene29390:intron | 30.0% |
| AAAAGATGGAAAAGATAGGG+TGG | + | chr3.3:58578315-58578334 | MS.gene29390:CDS | 35.0% | |
| AACTTCTCATTAGAAGCTGA+TGG | + | chr3.3:58577552-58577571 | MS.gene29390:CDS | 35.0% | |
| AATCCAAACAGATGCTTAGA+AGG | - | chr3.3:58576451-58576470 | None:intergenic | 35.0% | |
| AATGGAAGTTCCATAGATGA+AGG | + | chr3.3:58577826-58577845 | MS.gene29390:CDS | 35.0% | |
| AATGTTGATGCTCAAAGCAA+AGG | - | chr3.3:58577224-58577243 | None:intergenic | 35.0% | |
| AATTACATGAAGGGTGATCA+TGG | - | chr3.3:58579044-58579063 | None:intergenic | 35.0% | |
| ACAAGACATTAACAATGAGG+AGG | + | chr3.3:58577043-58577062 | MS.gene29390:CDS | 35.0% | |
| AGATTGCAATAAGGTAGGTT+TGG | + | chr3.3:58576425-58576444 | MS.gene29390:intron | 35.0% | |
| AGTACTTCTTGGAATGAACA+CGG | + | chr3.3:58578712-58578731 | MS.gene29390:intron | 35.0% | |
| AGTGGAAATACCTTCATCTA+TGG | - | chr3.3:58577839-58577858 | None:intergenic | 35.0% | |
| ATGGTCAAGTCATTGAATCA+AGG | + | chr3.3:58578227-58578246 | MS.gene29390:CDS | 35.0% | |
| ATTACATGAAGGGTGATCAT+GGG | - | chr3.3:58579043-58579062 | None:intergenic | 35.0% | |
| CAATAGAAAAAGGATGTGGA+AGG | - | chr3.3:58577387-58577406 | None:intergenic | 35.0% | |
| CAATTTCCAAGTACAAACCT+TGG | - | chr3.3:58578978-58578997 | None:intergenic | 35.0% | |
| CATTGAATCAAGGAAAGATC+TGG | + | chr3.3:58578237-58578256 | MS.gene29390:CDS | 35.0% | |
| CCTACCTTATTGCAATCTAA+AGG | - | chr3.3:58576423-58576442 | None:intergenic | 35.0% | |
| CCTTTAGATTGCAATAAGGT+AGG | + | chr3.3:58576420-58576439 | MS.gene29390:intron | 35.0% | |
| CTATTATGAAGTCACATGAG+AGG | + | chr3.3:58578519-58578538 | MS.gene29390:intron | 35.0% | |
| CTTAGTTACTTGAACCTTCA+AGG | - | chr3.3:58578015-58578034 | None:intergenic | 35.0% | |
| CTTATCCAAAAAGGGTCTAA+GGG | + | chr3.3:58576660-58576679 | MS.gene29390:intron | 35.0% | |
| GAAGGTTCAAGTAACTAAGA+AGG | + | chr3.3:58578016-58578035 | MS.gene29390:intron | 35.0% | |
| GATGCTTATCAAGTAGAAGA+AGG | + | chr3.3:58577763-58577782 | MS.gene29390:CDS | 35.0% | |
| TACAGAAATACTGAAATGGG+AGG | + | chr3.3:58577661-58577680 | MS.gene29390:CDS | 35.0% | |
| TAGTTTCAATTTCGTTTCCG+AGG | - | chr3.3:58577082-58577101 | None:intergenic | 35.0% | |
| TATAAGCAATAGGGATAGTG+TGG | + | chr3.3:58578633-58578652 | MS.gene29390:intron | 35.0% | |
| TATGCCAGAAATCTTCTAGA+AGG | + | chr3.3:58579308-58579327 | MS.gene29390:CDS | 35.0% | |
| TGTAGGAATTTCAGTTGAAG+TGG | - | chr3.3:58578915-58578934 | None:intergenic | 35.0% | |
| TGTTCGAAGAAGAAAAATGG+CGG | + | chr3.3:58578197-58578216 | MS.gene29390:CDS | 35.0% | |
| TTCTAAGCATCTGTTTGGAT+TGG | + | chr3.3:58576450-58576469 | MS.gene29390:intron | 35.0% | |
| TTGAATACTCCTATGCTTTG+AGG | + | chr3.3:58577184-58577203 | MS.gene29390:intron | 35.0% | |
| TTTCAACAGAGGAGATAGAT+GGG | - | chr3.3:58578384-58578403 | None:intergenic | 35.0% | |
| ! | AGAAATCTTCTAGAAGGCAT+GGG | + | chr3.3:58579314-58579333 | MS.gene29390:CDS | 35.0% |
| ! | ATCCCAATCTTTTGTTGGAT+CGG | - | chr3.3:58578828-58578847 | None:intergenic | 35.0% |
| ! | GGAAAATCCCAATCTTTTGT+TGG | - | chr3.3:58578833-58578852 | None:intergenic | 35.0% |
| ! | TTAAAGATGTCATTTGGACC+AGG | + | chr3.3:58579281-58579300 | MS.gene29390:CDS | 35.0% |
| ! | TTTTCAACAGAGGAGATAGA+TGG | - | chr3.3:58578385-58578404 | None:intergenic | 35.0% |
| !! | AGACACAAAAGCATTTAGCA+GGG | - | chr3.3:58578085-58578104 | None:intergenic | 35.0% |
| !! | TAAATGGGTTGTTTCCTTGA+AGG | + | chr3.3:58577998-58578017 | MS.gene29390:intron | 35.0% |
| !! | TGCTTTGAGCATCAACATTT+TGG | + | chr3.3:58577225-58577244 | MS.gene29390:intron | 35.0% |
| !! | TTAGTGCTAGAAGTACTTCT+TGG | + | chr3.3:58578701-58578720 | MS.gene29390:intron | 35.0% |
| !! | TTGTTGAGTTCTTTCAGGTT+TGG | - | chr3.3:58577021-58577040 | None:intergenic | 35.0% |
| AAGTCAGCTTTCTGTATCCA+AGG | + | chr3.3:58578958-58578977 | MS.gene29390:CDS | 40.0% | |
| AAGTGTGTCTTCTAACCTGT+TGG | - | chr3.3:58577448-58577467 | None:intergenic | 40.0% | |
| AGAAAAAGGATGTGGAAGGA+AGG | - | chr3.3:58577383-58577402 | None:intergenic | 40.0% | |
| AGCTTGTGTCTACTACTAAC+TGG | + | chr3.3:58577888-58577907 | MS.gene29390:intron | 40.0% | |
| ATCAAGTAGAAGAAGGTGAG+TGG | + | chr3.3:58577770-58577789 | MS.gene29390:CDS | 40.0% | |
| ATCAAGTGTCCTCAAAGCAT+AGG | - | chr3.3:58577196-58577215 | None:intergenic | 40.0% | |
| ATGTCAATATAGAGATCGCG+CGG | + | chr3.3:58579139-58579158 | MS.gene29390:CDS | 40.0% | |
| CTGTATCCAAGGTTTGTACT+TGG | + | chr3.3:58578969-58578988 | MS.gene29390:intron | 40.0% | |
| GAAAGAAGAATCTTGCATGG+TGG | + | chr3.3:58579164-58579183 | MS.gene29390:CDS | 40.0% | |
| GCTGAAAGAAGAATCTTGCA+TGG | + | chr3.3:58579161-58579180 | MS.gene29390:CDS | 40.0% | |
| GCTTATCCAAAAAGGGTCTA+AGG | + | chr3.3:58576659-58576678 | MS.gene29390:intron | 40.0% | |
| GGAATTTCAGTTGAAGTGGA+AGG | - | chr3.3:58578911-58578930 | None:intergenic | 40.0% | |
| GTTCGAAGAAGAAAAATGGC+GGG | + | chr3.3:58578198-58578217 | MS.gene29390:CDS | 40.0% | |
| TAAATGACTTAGGGCCTGTT+TGG | - | chr3.3:58576881-58576900 | None:intergenic | 40.0% | |
| TGCCGATCCAACAAAAGATT+GGG | + | chr3.3:58578823-58578842 | MS.gene29390:CDS | 40.0% | |
| TGGTCAAACAATCTGCAAAG+CGG | + | chr3.3:58578356-58578375 | MS.gene29390:CDS | 40.0% | |
| TTCAATTTCGTTTCCGAGGA+AGG | - | chr3.3:58577078-58577097 | None:intergenic | 40.0% | |
| TTCGAACAAGATGCCTGTAA+TGG | - | chr3.3:58578185-58578204 | None:intergenic | 40.0% | |
| TTGAGATGTACTTCGCAGAT+AGG | - | chr3.3:58578424-58578443 | None:intergenic | 40.0% | |
| TTGGATACAGAAAGCTGACT+TGG | - | chr3.3:58578959-58578978 | None:intergenic | 40.0% | |
| ! | AATGCTTTTGTGTCTCTGCA+TGG | + | chr3.3:58578090-58578109 | MS.gene29390:intron | 40.0% |
| ! | CAGAAATCTTCTAGAAGGCA+TGG | + | chr3.3:58579313-58579332 | MS.gene29390:CDS | 40.0% |
| ! | CATGCCTTCTAGAAGATTTC+TGG | - | chr3.3:58579315-58579334 | None:intergenic | 40.0% |
| ! | GAGGCGTTAAAGATGTCATT+TGG | + | chr3.3:58579275-58579294 | MS.gene29390:CDS | 40.0% |
| ! | GCTAAGTGATTTTCATCCTC+TGG | - | chr3.3:58577805-58577824 | None:intergenic | 40.0% |
| ! | GTCAGAGCATCCAAAAAAGA+TGG | + | chr3.3:58578301-58578320 | MS.gene29390:CDS | 40.0% |
| ! | TACTGGTACACGTCTAAAAC+AGG | + | chr3.3:58578490-58578509 | MS.gene29390:intron | 40.0% |
| ! | TGATTTTCATCCTCTGGATC+TGG | - | chr3.3:58577799-58577818 | None:intergenic | 40.0% |
| !! | AGATTTCTGGCATAACTACC+TGG | - | chr3.3:58579302-58579321 | None:intergenic | 40.0% |
| !! | GACACAAAAGCATTTAGCAG+GGG | - | chr3.3:58578084-58578103 | None:intergenic | 40.0% |
| !! | GAGACACAAAAGCATTTAGC+AGG | - | chr3.3:58578086-58578105 | None:intergenic | 40.0% |
| !! | GTTATATCCATCGGTTTCCA+CGG | - | chr3.3:58577535-58577554 | None:intergenic | 40.0% |
| !! | TTATATCCATCGGTTTCCAC+GGG | - | chr3.3:58577534-58577553 | None:intergenic | 40.0% |
| !!! | GGTTTTAGAGTTTCCAGTTG+TGG | + | chr3.3:58578258-58578277 | MS.gene29390:CDS | 40.0% |
| !!! | TCATGCCATTTTCATCTGCT+GGG | - | chr3.3:58577702-58577721 | None:intergenic | 40.0% |
| AAAAGATAGGGTGGCAAGGT+TGG | + | chr3.3:58578324-58578343 | MS.gene29390:CDS | 45.0% | |
| AAAAGGATGTGGAAGGAAGG+AGG | - | chr3.3:58577380-58577399 | None:intergenic | 45.0% | |
| AAAAGGGTCTAAGGGTCGTT+TGG | + | chr3.3:58576668-58576687 | MS.gene29390:intron | 45.0% | |
| AAACCCAAGTGCGAGATATG+TGG | + | chr3.3:58578778-58578797 | MS.gene29390:CDS | 45.0% | |
| AAGCCACATATCTCGCACTT+GGG | - | chr3.3:58578784-58578803 | None:intergenic | 45.0% | |
| AATCTGGTACGCGTCAAAAC+AGG | + | chr3.3:58578442-58578461 | MS.gene29390:CDS | 45.0% | |
| AGAATCTTGCATGGTGGCTT+TGG | + | chr3.3:58579170-58579189 | MS.gene29390:CDS | 45.0% | |
| AGTTTCCAGTTGTGGACTTG+TGG | + | chr3.3:58578266-58578285 | MS.gene29390:CDS | 45.0% | |
| ATACTGAAATGGGAGGTGAC+TGG | + | chr3.3:58577668-58577687 | MS.gene29390:CDS | 45.0% | |
| ATCATGATCCTAATGCTGGC+TGG | + | chr3.3:58576343-58576362 | MS.gene29390:CDS | 45.0% | |
| ATGCAATCTCACTCATGGTG+TGG | - | chr3.3:58578133-58578152 | None:intergenic | 45.0% | |
| ATGGAAAAGATAGGGTGGCA+AGG | + | chr3.3:58578320-58578339 | MS.gene29390:CDS | 45.0% | |
| CTATAGTACCAGCCAGCATT+AGG | - | chr3.3:58576354-58576373 | None:intergenic | 45.0% | |
| CTGCCGATCCAACAAAAGAT+TGG | + | chr3.3:58578822-58578841 | MS.gene29390:CDS | 45.0% | |
| CTGCGAAGTACATCTCAATC+TGG | + | chr3.3:58578426-58578445 | MS.gene29390:CDS | 45.0% | |
| GAGGATTGTTCTTCCTTCCT+CGG | + | chr3.3:58577062-58577081 | MS.gene29390:CDS | 45.0% | |
| GTGGGTAAATCTTTCGCTGT+AGG | - | chr3.3:58578932-58578951 | None:intergenic | 45.0% | |
| GTTTCCAGTTGTGGACTTGT+GGG | + | chr3.3:58578267-58578286 | MS.gene29390:CDS | 45.0% | |
| TAGGCATGCAATCTCACTCA+TGG | - | chr3.3:58578138-58578157 | None:intergenic | 45.0% | |
| TAGGGATAGTGTGGCTTACA+TGG | + | chr3.3:58578642-58578661 | MS.gene29390:intron | 45.0% | |
| TCCAGAAGAAGCTACAGAAG+AGG | + | chr3.3:58579256-58579275 | MS.gene29390:CDS | 45.0% | |
| TGGCCTTCTAAGCATCTGTT+TGG | + | chr3.3:58576445-58576464 | MS.gene29390:intron | 45.0% | |
| TGGTACTATAGCACCAGTGA+TGG | + | chr3.3:58576363-58576382 | MS.gene29390:CDS | 45.0% | |
| ! | AACGACCCTTAGACCCTTTT+TGG | - | chr3.3:58576668-58576687 | None:intergenic | 45.0% |
| !! | TATATCCATCGGTTTCCACG+GGG | - | chr3.3:58577533-58577552 | None:intergenic | 45.0% |
| !!! | GTCATGCCATTTTCATCTGC+TGG | - | chr3.3:58577703-58577722 | None:intergenic | 45.0% |
| AAGGGTGATCATGGGAGAAG+GGG | - | chr3.3:58579035-58579054 | None:intergenic | 50.0% | |
| ACACCAAGATTCTTCTGCCC+TGG | - | chr3.3:58579203-58579222 | None:intergenic | 50.0% | |
| ACAGATAGGAACCTTGACCG+AGG | + | chr3.3:58577106-58577125 | MS.gene29390:CDS | 50.0% | |
| ACAGGCCCAGCAGATGAAAA+TGG | + | chr3.3:58577694-58577713 | MS.gene29390:CDS | 50.0% | |
| AGTTGTGGACTTGTGGGACT+GGG | + | chr3.3:58578273-58578292 | MS.gene29390:CDS | 50.0% | |
| CCACTTTGCTCGCAAGTCTA+AGG | + | chr3.3:58577854-58577873 | MS.gene29390:intron | 50.0% | |
| CCTTAGACTTGCGAGCAAAG+TGG | - | chr3.3:58577857-58577876 | None:intergenic | 50.0% | |
| CGGTCAAGGTTCCTATCTGT+TGG | - | chr3.3:58577106-58577125 | None:intergenic | 50.0% | |
| CTCACAAGTGCTTATGCCAG+TGG | - | chr3.3:58576495-58576514 | None:intergenic | 50.0% | |
| GAAGCCACATATCTCGCACT+TGG | - | chr3.3:58578785-58578804 | None:intergenic | 50.0% | |
| GAAGGAGGATACCATTCCGA+CGG | - | chr3.3:58577365-58577384 | None:intergenic | 50.0% | |
| GAAGGGTGATCATGGGAGAA+GGG | - | chr3.3:58579036-58579055 | None:intergenic | 50.0% | |
| GCCTCTTCTGTAGCTTCTTC+TGG | - | chr3.3:58579260-58579279 | None:intergenic | 50.0% | |
| GCTTCTTCTGGACAAGCATC+AGG | - | chr3.3:58579248-58579267 | None:intergenic | 50.0% | |
| GGTCTAAGGGTCGTTTGGAT+TGG | + | chr3.3:58576673-58576692 | MS.gene29390:intron | 50.0% | |
| TCCACGAACAGTCCAACTTG+TGG | + | chr3.3:58577326-58577345 | MS.gene29390:CDS | 50.0% | |
| TGAAGGGTGATCATGGGAGA+AGG | - | chr3.3:58579037-58579056 | None:intergenic | 50.0% | |
| ! | ATCTTCTAGAAGGCATGGGC+TGG | + | chr3.3:58579318-58579337 | MS.gene29390:CDS | 50.0% |
| ! | ATTTTCATCTGCTGGGCCTG+TGG | - | chr3.3:58577695-58577714 | None:intergenic | 50.0% |
| ! | GGGCAGAAGAATCTTGGTGT+CGG | + | chr3.3:58579203-58579222 | MS.gene29390:CDS | 50.0% |
| ! | TCCACAAGTTGGACTGTTCG+TGG | - | chr3.3:58577330-58577349 | None:intergenic | 50.0% |
| ! | TGAGTGGATTCCAGATCCAG+AGG | + | chr3.3:58577786-58577805 | MS.gene29390:CDS | 50.0% |
| !! | AGAAAGCTGACTTGGCAACG+TGG | - | chr3.3:58578951-58578970 | None:intergenic | 50.0% |
| !! | GAAAAATGGCGGGCTCAGTA+TGG | + | chr3.3:58578208-58578227 | MS.gene29390:CDS | 50.0% |
| !! | GAAAGCTGACTTGGCAACGT+GGG | - | chr3.3:58578950-58578969 | None:intergenic | 50.0% |
| !! | TTGCATGGTGGCTTTGGTGT+TGG | + | chr3.3:58579176-58579195 | MS.gene29390:CDS | 50.0% |
| AACCTTGACCGAGGAAGCAG+GGG | + | chr3.3:58577115-58577134 | MS.gene29390:CDS | 55.0% | |
| AGCATTTAGCAGGGGACTCG+AGG | - | chr3.3:58578076-58578095 | None:intergenic | 55.0% | |
| CAGTCCCACAAGTCCACAAC+TGG | - | chr3.3:58578274-58578293 | None:intergenic | 55.0% | |
| CAGTTGTGGACTTGTGGGAC+TGG | + | chr3.3:58578272-58578291 | MS.gene29390:CDS | 55.0% | |
| CTTACCATCCCCTGCTTCCT+CGG | - | chr3.3:58577126-58577145 | None:intergenic | 55.0% | |
| GAACCTTGACCGAGGAAGCA+GGG | + | chr3.3:58577114-58577133 | MS.gene29390:CDS | 55.0% | |
| GGACTTGTGGGACTGGGAAA+TGG | + | chr3.3:58578279-58578298 | MS.gene29390:CDS | 55.0% | |
| GGTCCAGGGCAGAAGAATCT+TGG | + | chr3.3:58579197-58579216 | MS.gene29390:CDS | 55.0% | |
| GGTGGAGGGTTTCCACAAGT+TGG | - | chr3.3:58577341-58577360 | None:intergenic | 55.0% | |
| TGATACAGTGACAGACCCCG+TGG | + | chr3.3:58577515-58577534 | MS.gene29390:CDS | 55.0% | |
| ! | GATAGGGTGGCAAGGTTGGT+TGG | + | chr3.3:58578328-58578347 | MS.gene29390:CDS | 55.0% |
| ! | GGCAAGGTTGGTTGGAAGAC+TGG | + | chr3.3:58578336-58578355 | MS.gene29390:CDS | 55.0% |
| !! | GTGGCTTTGGTGTTGGTCCA+GGG | + | chr3.3:58579183-58579202 | MS.gene29390:CDS | 55.0% |
| !! | TCTAGAAGGCATGGGCTGGA+AGG | + | chr3.3:58579322-58579341 | MS.gene29390:CDS | 55.0% |
| ACAGACCCCGTGGAAACCGA+TGG | + | chr3.3:58577525-58577544 | MS.gene29390:CDS | 60.0% | |
| ATCCCCTGCTTCCTCGGTCA+AGG | - | chr3.3:58577120-58577139 | None:intergenic | 60.0% | |
| ATGGGAGGTGACTGGACCAC+AGG | + | chr3.3:58577676-58577695 | MS.gene29390:CDS | 60.0% | |
| GGAACCTTGACCGAGGAAGC+AGG | + | chr3.3:58577113-58577132 | MS.gene29390:CDS | 60.0% | |
| GGAGGATACCATTCCGACGG+CGG | - | chr3.3:58577362-58577381 | None:intergenic | 60.0% | |
| TTGACCGAGGAAGCAGGGGA+TGG | + | chr3.3:58577119-58577138 | MS.gene29390:CDS | 60.0% | |
| !! | GGTGGCTTTGGTGTTGGTCC+AGG | + | chr3.3:58579182-58579201 | MS.gene29390:CDS | 60.0% |
| ACCATTCCGACGGCGGTGGA+GGG | - | chr3.3:58577355-58577374 | None:intergenic | 65.0% | |
| GGATACCATTCCGACGGCGG+TGG | - | chr3.3:58577359-58577378 | None:intergenic | 65.0% | |
| TACCATTCCGACGGCGGTGG+AGG | - | chr3.3:58577356-58577375 | None:intergenic | 65.0% | |
| TGGAAACCCTCCACCGCCGT+CGG | + | chr3.3:58577346-58577365 | MS.gene29390:CDS | 65.0% | |
| ACCCTCCACCGCCGTCGGAA+TGG | + | chr3.3:58577351-58577370 | MS.gene29390:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 58576332 | 58579346 | 58576332 | ID=MS.gene29390 |
| chr3.3 | mRNA | 58576332 | 58579346 | 58576332 | ID=MS.gene29390.t1;Parent=MS.gene29390 |
| chr3.3 | exon | 58576332 | 58576437 | 58576332 | ID=MS.gene29390.t1.exon1;Parent=MS.gene29390.t1 |
| chr3.3 | CDS | 58576332 | 58576437 | 58576332 | ID=cds.MS.gene29390.t1;Parent=MS.gene29390.t1 |
| chr3.3 | exon | 58576981 | 58577140 | 58576981 | ID=MS.gene29390.t1.exon2;Parent=MS.gene29390.t1 |
| chr3.3 | CDS | 58576981 | 58577140 | 58576981 | ID=cds.MS.gene29390.t1;Parent=MS.gene29390.t1 |
| chr3.3 | exon | 58577315 | 58577372 | 58577315 | ID=MS.gene29390.t1.exon3;Parent=MS.gene29390.t1 |
| chr3.3 | CDS | 58577315 | 58577372 | 58577315 | ID=cds.MS.gene29390.t1;Parent=MS.gene29390.t1 |
| chr3.3 | exon | 58577452 | 58577573 | 58577452 | ID=MS.gene29390.t1.exon4;Parent=MS.gene29390.t1 |
| chr3.3 | CDS | 58577452 | 58577573 | 58577452 | ID=cds.MS.gene29390.t1;Parent=MS.gene29390.t1 |
| chr3.3 | exon | 58577659 | 58577847 | 58577659 | ID=MS.gene29390.t1.exon5;Parent=MS.gene29390.t1 |
| chr3.3 | CDS | 58577659 | 58577847 | 58577659 | ID=cds.MS.gene29390.t1;Parent=MS.gene29390.t1 |
| chr3.3 | exon | 58578191 | 58578463 | 58578191 | ID=MS.gene29390.t1.exon6;Parent=MS.gene29390.t1 |
| chr3.3 | CDS | 58578191 | 58578463 | 58578191 | ID=cds.MS.gene29390.t1;Parent=MS.gene29390.t1 |
| chr3.3 | exon | 58578759 | 58578979 | 58578759 | ID=MS.gene29390.t1.exon7;Parent=MS.gene29390.t1 |
| chr3.3 | CDS | 58578759 | 58578979 | 58578759 | ID=cds.MS.gene29390.t1;Parent=MS.gene29390.t1 |
| chr3.3 | exon | 58579131 | 58579346 | 58579131 | ID=MS.gene29390.t1.exon8;Parent=MS.gene29390.t1 |
| chr3.3 | CDS | 58579131 | 58579346 | 58579131 | ID=cds.MS.gene29390.t1;Parent=MS.gene29390.t1 |
| Gene Sequence |
| Protein sequence |
