AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29675


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29675.t1 MTR_5g083040 91.265 332 29 0 1 332 1 332 0.0 585
MS.gene29675.t1 MTR_5g074270 38.957 326 190 4 10 332 11 330 7.28e-89 271
MS.gene29675.t1 MTR_4g087985 41.801 311 171 5 28 332 32 338 3.93e-86 264
MS.gene29675.t1 MTR_2g015080 40.764 314 172 6 28 332 34 342 3.99e-84 259
MS.gene29675.t1 MTR_1g025780 38.284 303 180 2 30 332 39 334 1.17e-80 250
MS.gene29675.t1 MTR_3g114120 40.461 304 171 4 31 332 46 341 1.03e-78 245
MS.gene29675.t1 MTR_1g025700 38.658 313 179 4 21 332 44 344 9.16e-78 243
MS.gene29675.t1 MTR_1g025760 37.994 329 191 4 10 332 54 375 2.35e-77 243
MS.gene29675.t1 MTR_5g022640 39.375 320 178 7 17 332 32 339 7.60e-76 238
MS.gene29675.t1 MTR_5g022630 40.123 324 171 9 17 332 32 340 1.70e-75 237
MS.gene29675.t1 MTR_3g114090 38.816 304 177 4 31 332 35 331 4.08e-74 233
MS.gene29675.t1 MTR_3g464730 37.117 326 191 5 10 332 10 324 1.02e-73 232
MS.gene29675.t1 MTR_1g025720 35.866 329 197 5 10 332 11 331 1.03e-73 232
MS.gene29675.t1 MTR_1g025680 35.542 332 201 5 7 332 5 329 2.87e-73 234
MS.gene29675.t1 MTR_5g084770 37.459 307 184 4 28 332 24 324 3.35e-73 231
MS.gene29675.t1 MTR_8g075230 36.677 319 189 5 16 332 24 331 2.76e-72 228
MS.gene29675.t1 MTR_5g084750 37.338 308 182 5 28 332 26 325 1.32e-71 226
MS.gene29675.t1 MTR_1g025910 41.137 299 163 5 37 332 41 329 6.20e-70 223
MS.gene29675.t1 MTR_8g014910 35.410 305 187 5 31 332 31 328 2.25e-67 216
MS.gene29675.t1 MTR_3g082830 37.419 310 177 5 29 332 35 333 3.90e-66 213
MS.gene29675.t1 MTR_8g075200 36.513 304 184 4 31 332 40 336 4.24e-66 214
MS.gene29675.t1 MTR_2g100620 35.599 309 181 6 31 332 30 327 2.02e-65 211
MS.gene29675.t1 MTR_5g084790 37.097 310 178 5 29 332 29 327 3.95e-65 210
MS.gene29675.t1 MTR_8g075220 35.599 309 185 5 31 332 39 340 7.04e-64 207
MS.gene29675.t1 MTR_2g084585 34.226 336 196 6 7 332 5 325 5.06e-62 202
MS.gene29675.t1 MTR_4g056280 34.132 334 197 7 11 332 3 325 2.69e-61 200
MS.gene29675.t1 MTR_4g056160 34.416 308 190 6 30 332 25 325 2.25e-58 192
MS.gene29675.t1 MTR_7g116570 33.036 336 204 7 7 332 5 329 8.20e-53 178
MS.gene29675.t1 MTR_1g069175 31.715 309 192 5 32 332 33 330 7.04e-48 166
MS.gene29675.t1 MTR_2g033930 31.498 327 210 7 10 332 10 326 4.08e-47 163
MS.gene29675.t1 MTR_1g079540 30.164 305 200 5 32 332 31 326 4.42e-47 163
MS.gene29675.t1 MTR_3g052490 31.412 347 191 11 7 332 9 329 1.21e-45 159
MS.gene29675.t1 MTR_7g116510 29.508 305 203 5 26 326 19 315 2.61e-45 159
MS.gene29675.t1 MTR_5g009100 30.464 302 199 5 34 332 48 341 6.14e-45 158
MS.gene29675.t1 MTR_7g116520 29.180 305 203 5 32 332 34 329 6.75e-45 157
MS.gene29675.t1 MTR_3g052480 31.751 337 204 10 7 332 10 331 3.02e-44 156
MS.gene29675.t1 MTR_7g008060 29.664 327 201 7 10 332 14 315 3.07e-44 155
MS.gene29675.t1 MTR_6g021530 29.866 298 195 6 34 326 31 319 4.09e-44 155
MS.gene29675.t1 MTR_8g087890 31.068 309 197 8 29 332 28 325 4.62e-44 155
MS.gene29675.t1 MTR_7g116500 27.619 315 215 5 22 332 23 328 9.50e-44 154
MS.gene29675.t1 MTR_1g079530 29.305 331 213 7 8 332 3 318 8.27e-43 152
MS.gene29675.t1 MTR_8g022810 30.159 315 198 10 27 332 36 337 1.15e-42 152
MS.gene29675.t1 MTR_5g093090 30.476 315 192 8 30 332 26 325 1.59e-42 151
MS.gene29675.t1 MTR_2g044100 32.500 320 186 11 12 317 17 320 2.28e-41 149
MS.gene29675.t1 MTR_4g019880 27.660 329 220 7 10 332 13 329 5.24e-41 147
MS.gene29675.t1 MTR_3g435540 31.715 309 186 9 34 332 25 318 5.46e-41 147
MS.gene29675.t1 MTR_3g024510 29.299 314 196 9 29 332 35 332 5.93e-41 147
MS.gene29675.t1 MTR_8g079050 28.571 343 227 8 1 332 4 339 9.88e-41 147
MS.gene29675.t1 MTR_1g024890 27.976 336 229 5 1 332 1 327 1.33e-40 146
MS.gene29675.t1 MTR_0565s0010 28.235 340 215 9 8 332 2 327 1.52e-40 146
MS.gene29675.t1 MTR_3g098270 30.723 332 209 8 10 332 13 332 1.81e-40 146
MS.gene29675.t1 MTR_4g122200 32.039 309 192 10 31 332 34 331 2.40e-39 143
MS.gene29675.t1 MTR_3g052580 30.029 343 199 13 7 332 6 324 2.78e-39 143
MS.gene29675.t1 MTR_3g052580 30.029 343 199 13 7 332 5 323 3.32e-39 143
MS.gene29675.t1 MTR_3g005660 31.111 315 193 8 29 332 33 334 4.04e-39 142
MS.gene29675.t1 MTR_3g005650 29.080 337 216 10 1 332 2 320 1.32e-38 140
MS.gene29675.t1 MTR_4g035353 28.955 335 222 8 4 332 2 326 1.49e-38 140
MS.gene29675.t1 MTR_4g108690 29.934 304 198 7 34 332 29 322 1.81e-38 140
MS.gene29675.t1 MTR_2g033920 29.003 331 213 11 9 332 16 331 3.51e-38 140
MS.gene29675.t1 MTR_8g074570 29.290 338 214 10 6 332 12 335 1.44e-37 138
MS.gene29675.t1 MTR_2g017875 30.449 312 193 10 27 332 29 322 1.73e-36 135
MS.gene29675.t1 MTR_8g074580 27.385 325 218 5 1 317 11 325 2.05e-36 136
MS.gene29675.t1 MTR_8g087870 29.961 257 166 6 29 281 26 272 1.01e-35 133
MS.gene29675.t1 MTR_8g031430 27.273 330 217 9 9 331 14 327 1.66e-35 132
MS.gene29675.t1 MTR_8g022790 29.861 288 180 9 29 309 34 306 2.68e-35 132
MS.gene29675.t1 MTR_8g031400 27.922 308 199 9 32 332 37 328 2.89e-35 132
MS.gene29675.t1 MTR_0009s0250 29.091 330 209 9 8 332 9 318 3.28e-35 131
MS.gene29675.t1 MTR_5g093090 30.961 281 167 8 30 298 26 291 3.83e-35 130
MS.gene29675.t1 MTR_8g031420 27.832 309 198 10 32 332 35 326 4.66e-35 131
MS.gene29675.t1 MTR_2g017925 30.888 259 164 6 28 281 29 277 5.47e-35 131
MS.gene29675.t1 MTR_2g017955 30.620 258 164 6 29 281 30 277 8.40e-35 131
MS.gene29675.t1 MTR_5g078210 31.210 314 197 10 25 332 18 318 1.14e-34 130
MS.gene29675.t1 MTR_8g022810 35.545 211 126 7 27 233 36 240 9.85e-34 127
MS.gene29675.t1 MTR_8g031390 27.184 309 199 10 32 332 37 327 4.37e-33 126
MS.gene29675.t1 MTR_3g021460 28.339 307 195 10 10 307 10 300 1.17e-32 125
MS.gene29675.t1 MTR_3g023220 28.975 283 176 9 29 306 30 292 1.80e-32 124
MS.gene29675.t1 MTR_2g017965 28.824 340 216 12 1 332 1 322 2.30e-32 124
MS.gene29675.t1 MTR_8g074560 29.275 345 214 11 3 332 2 331 4.33e-32 124
MS.gene29675.t1 MTR_2g461580 27.303 304 206 7 10 309 10 302 7.09e-32 122
MS.gene29675.t1 MTR_8g031390 27.083 288 191 8 32 317 37 307 2.21e-31 120
MS.gene29675.t1 MTR_4g036375 35.385 195 117 2 11 199 3 194 4.79e-31 116
MS.gene29675.t1 MTR_5g078210 32.258 279 171 9 25 297 18 284 6.12e-31 119
MS.gene29675.t1 MTR_1g079590 34.615 208 124 5 6 204 2 206 7.90e-31 116
MS.gene29675.t1 MTR_2g017915 30.992 242 152 7 28 262 29 262 1.47e-30 119
MS.gene29675.t1 MTR_2g033920 28.814 295 189 9 9 297 16 295 4.80e-30 117
MS.gene29675.t1 MTR_7g087190 26.045 311 204 11 14 309 22 321 6.95e-26 107
MS.gene29675.t1 MTR_5g074210 34.109 129 79 2 204 332 64 186 1.53e-25 102
MS.gene29675.t1 MTR_1g030275 27.331 311 198 10 12 309 19 314 4.60e-25 104
MS.gene29675.t1 MTR_3g463960 26.513 347 224 13 8 331 13 351 5.37e-25 104
MS.gene29675.t1 MTR_3g463950 26.513 347 224 13 8 331 13 351 5.37e-25 104
MS.gene29675.t1 MTR_3g463970 26.513 347 224 13 8 331 13 351 5.37e-25 104
MS.gene29675.t1 MTR_3g463940 26.513 347 224 13 8 331 13 351 5.37e-25 104
MS.gene29675.t1 MTR_8g089805 26.183 317 207 11 8 309 13 317 1.28e-24 103
MS.gene29675.t1 MTR_3g463930 25.556 360 218 12 8 331 13 358 2.18e-24 103
MS.gene29675.t1 MTR_1g030230 27.778 324 202 10 1 309 1 307 5.51e-24 101
MS.gene29675.t1 MTR_2g018015 30.846 201 132 5 28 223 32 230 1.27e-23 99.4
MS.gene29675.t1 MTR_7g111780 28.425 292 178 10 28 309 32 302 3.00e-23 99.4
MS.gene29675.t1 MTR_2g015580 25.740 338 226 14 10 331 25 353 1.80e-22 97.8
MS.gene29675.t1 MTR_1g030268 26.897 290 188 8 31 309 39 315 1.85e-22 97.4
MS.gene29675.t1 MTR_1108s0010 28.713 202 120 5 135 332 3 184 3.54e-22 93.6
MS.gene29675.t1 MTR_8g028160 26.625 323 203 14 32 331 36 347 5.91e-22 95.9
MS.gene29675.t1 MTR_7g116870 25.952 289 195 8 32 313 33 309 7.91e-22 95.5
MS.gene29675.t1 MTR_4g104240 25.356 351 227 12 1 331 5 340 1.21e-21 95.1
MS.gene29675.t1 MTR_1g030340 28.267 329 192 13 3 309 12 318 1.26e-21 95.1
MS.gene29675.t1 MTR_3g069780 26.730 318 202 14 32 331 30 334 2.56e-21 94.0
MS.gene29675.t1 MTR_5g093090 32.240 183 107 6 30 200 26 203 3.46e-21 90.9
MS.gene29675.t1 MTR_1g082390 28.028 289 184 11 31 309 30 304 5.05e-21 93.2
MS.gene29675.t1 MTR_7g033155 25.203 369 215 13 9 331 10 363 1.02e-20 92.8
MS.gene29675.t1 MTR_7g033150 25.680 331 199 13 32 331 35 349 1.91e-20 91.7
MS.gene29675.t1 MTR_7g104220 26.452 310 192 15 33 332 43 326 3.23e-20 90.5
MS.gene29675.t1 MTR_6g049220 42.697 89 51 0 30 118 28 116 1.43e-19 85.1
MS.gene29675.t1 MTR_3g438030 26.266 316 202 14 32 329 30 332 1.84e-19 88.6
MS.gene29675.t1 MTR_2g015630 26.149 348 231 14 1 331 1 339 3.24e-19 88.2
MS.gene29675.t1 MTR_7g113860 26.132 287 194 10 31 309 28 304 3.97e-19 87.8
MS.gene29675.t1 MTR_6g034400 36.364 121 76 1 85 204 4 124 4.54e-19 82.4
MS.gene29675.t1 MTR_2g043980 25.552 317 193 14 32 331 34 324 5.14e-19 87.4
MS.gene29675.t1 MTR_1g030268 26.316 304 197 10 31 323 39 326 6.62e-19 86.7
MS.gene29675.t1 MTR_5g087690 24.013 304 214 9 32 332 50 339 2.55e-18 85.5
MS.gene29675.t1 MTR_2g079090 25.080 311 200 12 32 329 30 320 3.07e-18 85.1
MS.gene29675.t1 MTR_2g079080 24.759 311 199 13 32 328 30 319 3.54e-18 84.7
MS.gene29675.t1 MTR_7g033165 25.862 290 191 10 31 307 32 310 1.34e-17 83.6
MS.gene29675.t1 MTR_7g113860 26.014 296 198 12 23 309 27 310 1.88e-17 83.2
MS.gene29675.t1 MTR_0029s0050 25.000 316 198 13 32 331 30 322 2.39e-17 82.4
MS.gene29675.t1 MTR_2g015590 25.000 320 208 13 32 331 31 338 3.05e-17 82.4
MS.gene29675.t1 MTR_0029s0100 24.841 314 201 13 32 331 30 322 4.47e-17 81.6
MS.gene29675.t1 MTR_6g007090 27.682 289 185 9 31 308 38 313 4.59e-17 81.6
MS.gene29675.t1 MTR_1g060490 23.567 314 201 12 30 332 35 320 7.58e-17 80.9
MS.gene29675.t1 MTR_2g087292 32.692 156 102 2 8 161 7 161 8.19e-17 79.7
MS.gene29675.t1 MTR_3g448360 26.183 317 206 12 32 331 29 334 8.23e-17 80.9
MS.gene29675.t1 MTR_1g060500 23.734 316 200 11 33 332 41 331 4.37e-16 79.0
MS.gene29675.t1 MTR_6g007100 25.478 314 202 11 31 331 32 326 1.78e-15 77.0
MS.gene29675.t1 MTR_1g092690 24.262 305 190 13 26 321 43 315 2.32e-15 76.6
MS.gene29675.t1 MTR_6g049230 32.031 128 79 3 206 332 74 194 3.83e-15 73.6
MS.gene29675.t1 MTR_6g007095 24.375 320 209 11 31 331 40 345 3.86e-15 77.0
MS.gene29675.t1 MTR_1g092760 25.090 279 177 8 33 306 40 291 8.17e-15 75.1
MS.gene29675.t1 MTR_7g111780 26.761 213 136 6 107 309 1 203 1.25e-14 73.6
MS.gene29675.t1 MTR_3g069520 25.697 323 197 15 32 331 30 332 2.33e-14 73.6
MS.gene29675.t1 MTR_1g092740 26.941 219 142 6 33 251 39 239 6.66e-14 72.4
MS.gene29675.t1 MTR_8g012540 22.985 335 227 11 16 331 15 337 4.56e-13 69.7
MS.gene29675.t1 MTR_1g030265 29.870 154 102 4 156 309 133 280 1.17e-12 68.6
MS.gene29675.t1 MTR_4g056220 46.667 60 31 1 274 332 103 162 5.46e-12 64.3
MS.gene29675.t1 MTR_5g062890 54.717 53 23 1 31 82 27 79 1.37e-11 60.8
MS.gene29675.t1 MTR_5g084880 28.333 120 79 2 179 298 1 113 4.29e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29675.t1 AT2G40250 47.841 301 156 1 32 332 36 335 2.51e-103 308
MS.gene29675.t1 AT2G24560 42.560 336 179 7 3 332 4 331 8.34e-87 266
MS.gene29675.t1 AT1G06990 44.554 303 162 3 31 332 36 333 1.21e-86 265
MS.gene29675.t1 AT1G58430 42.388 335 182 6 3 332 4 332 2.40e-86 265
MS.gene29675.t1 AT2G31540 40.181 331 189 4 5 332 8 332 1.02e-85 263
MS.gene29675.t1 AT2G30310 40.120 334 190 6 3 332 4 331 2.38e-82 254
MS.gene29675.t1 AT2G30220 38.739 333 195 4 3 332 4 330 6.87e-80 248
MS.gene29675.t1 AT1G75900 38.226 327 189 5 8 332 22 337 1.49e-79 247
MS.gene29675.t1 AT5G45960 38.689 305 178 4 32 332 47 346 1.82e-78 245
MS.gene29675.t1 AT2G24560 41.456 316 171 7 3 312 4 311 9.40e-76 236
MS.gene29675.t1 AT5G42170 36.964 303 181 5 31 332 49 342 3.84e-75 236
MS.gene29675.t1 AT1G20120 37.188 320 186 5 21 332 61 373 4.75e-75 237
MS.gene29675.t1 AT1G75880 37.423 326 192 6 12 332 29 347 6.90e-75 236
MS.gene29675.t1 AT1G75880 37.309 327 192 7 12 332 29 348 5.51e-73 231
MS.gene29675.t1 AT1G20132 37.419 310 175 5 30 332 59 356 1.98e-72 229
MS.gene29675.t1 AT4G26790 37.255 306 183 4 29 332 26 324 3.00e-71 226
MS.gene29675.t1 AT4G26790 37.255 306 183 4 29 332 26 324 3.00e-71 226
MS.gene29675.t1 AT1G75890 39.542 306 175 6 30 332 45 343 4.09e-71 226
MS.gene29675.t1 AT1G75890 39.542 306 175 6 30 332 74 372 7.89e-71 226
MS.gene29675.t1 AT1G75890 38.245 319 174 7 30 332 45 356 4.14e-68 218
MS.gene29675.t1 AT3G16370 37.061 313 171 6 31 332 29 326 1.40e-67 216
MS.gene29675.t1 AT1G59406 34.663 326 201 6 10 332 6 322 9.07e-67 214
MS.gene29675.t1 AT1G59030 34.663 326 201 6 10 332 6 322 9.07e-67 214
MS.gene29675.t1 AT1G58725 34.663 326 201 6 10 332 6 322 9.07e-67 214
MS.gene29675.t1 AT2G04570 34.675 323 202 4 12 332 8 323 2.82e-66 213
MS.gene29675.t1 AT5G03810 37.987 308 175 5 31 332 29 326 7.25e-66 212
MS.gene29675.t1 AT2G42990 35.866 329 202 4 6 332 2 323 5.77e-65 209
MS.gene29675.t1 AT1G20130 35.220 318 183 6 28 332 179 486 1.51e-64 213
MS.gene29675.t1 AT1G20130 35.220 318 183 6 28 332 199 506 3.69e-64 213
MS.gene29675.t1 AT3G14820 35.644 303 184 5 31 332 31 323 8.61e-63 204
MS.gene29675.t1 AT5G63170 34.226 336 192 8 1 332 1 311 6.32e-61 199
MS.gene29675.t1 AT3G43570 31.902 326 181 7 10 332 6 293 8.03e-61 198
MS.gene29675.t1 AT1G58520 33.663 303 184 6 31 332 29 315 4.70e-60 196
MS.gene29675.t1 AT1G58525 33.663 303 184 6 31 332 29 315 4.70e-60 196
MS.gene29675.t1 AT5G45950 34.472 322 194 7 14 332 22 329 1.42e-59 196
MS.gene29675.t1 AT1G20135 36.213 301 181 4 12 310 9 300 1.67e-59 194
MS.gene29675.t1 AT5G03820 35.390 308 184 5 31 332 32 330 5.59e-59 194
MS.gene29675.t1 AT5G22810 34.936 312 183 7 30 332 32 332 8.30e-59 194
MS.gene29675.t1 AT5G03820 35.390 308 184 5 31 332 60 358 1.79e-58 194
MS.gene29675.t1 AT3G43550 33.677 291 180 6 10 297 6 286 2.15e-57 188
MS.gene29675.t1 AT3G53100 32.581 310 190 6 30 332 27 324 6.51e-56 186
MS.gene29675.t1 AT1G75920 34.043 329 192 8 10 332 7 316 4.32e-55 184
MS.gene29675.t1 AT1G23500 36.842 304 169 7 32 332 35 318 3.52e-53 179
MS.gene29675.t1 AT1G73610 34.983 303 175 6 32 332 35 317 1.77e-52 177
MS.gene29675.t1 AT1G75920 32.558 344 192 9 10 332 2 326 3.16e-51 174
MS.gene29675.t1 AT5G08460 30.844 308 200 5 31 332 48 348 2.72e-50 172
MS.gene29675.t1 AT1G75930 36.223 323 184 9 15 332 11 316 7.83e-50 170
MS.gene29675.t1 AT1G75910 32.110 327 197 6 10 332 11 316 1.11e-49 169
MS.gene29675.t1 AT4G10950 30.892 314 190 10 30 332 69 366 1.05e-48 169
MS.gene29675.t1 AT3G50400 32.258 310 195 7 32 332 34 337 2.45e-48 167
MS.gene29675.t1 AT4G28780 28.963 328 222 5 8 332 7 326 1.02e-47 165
MS.gene29675.t1 AT2G31550 39.086 197 112 3 138 332 1 191 2.71e-47 159
MS.gene29675.t1 AT4G10950 30.255 314 188 10 30 332 69 362 2.39e-45 160
MS.gene29675.t1 AT3G04290 28.247 308 208 5 29 332 26 324 6.88e-45 157
MS.gene29675.t1 AT1G53920 30.058 346 216 11 1 332 10 343 1.26e-43 155
MS.gene29675.t1 AT1G75920 33.216 283 164 8 56 332 25 288 2.07e-43 152
MS.gene29675.t1 AT5G33370 29.180 305 203 5 32 332 30 325 3.11e-43 153
MS.gene29675.t1 AT2G23540 31.378 341 206 10 9 332 21 350 6.39e-43 153
MS.gene29675.t1 AT1G29670 30.032 313 194 9 29 332 29 325 1.31e-42 151
MS.gene29675.t1 AT5G15720 31.392 309 197 8 30 332 28 327 1.58e-42 151
MS.gene29675.t1 AT1G29670 30.032 313 194 9 29 332 97 393 4.94e-42 152
MS.gene29675.t1 AT1G29660 28.155 309 206 7 29 332 29 326 8.00e-42 149
MS.gene29675.t1 AT5G41890 31.737 334 201 9 14 332 17 338 9.68e-42 149
MS.gene29675.t1 AT1G33811 31.310 313 197 9 29 332 31 334 1.68e-41 149
MS.gene29675.t1 AT5G45670 28.182 330 222 7 8 332 5 324 3.01e-40 145
MS.gene29675.t1 AT1G74460 28.947 304 201 7 34 332 25 318 6.71e-40 144
MS.gene29675.t1 AT1G75920 29.787 329 175 9 10 332 7 285 3.85e-39 141
MS.gene29675.t1 AT4G18970 30.097 309 199 8 30 332 26 323 6.51e-39 142
MS.gene29675.t1 AT5G18430 25.893 336 234 5 1 332 1 325 1.64e-38 140
MS.gene29675.t1 AT4G18970 30.097 309 199 8 30 332 26 323 2.07e-38 141
MS.gene29675.t1 AT1G71691 31.270 307 194 8 30 332 53 346 1.76e-37 138
MS.gene29675.t1 AT5G55050 28.155 309 207 5 31 332 38 338 2.67e-37 138
MS.gene29675.t1 AT5G40990 28.614 339 216 11 8 332 10 336 5.65e-36 134
MS.gene29675.t1 AT3G14225 27.419 310 206 8 32 332 37 336 6.54e-36 134
MS.gene29675.t1 AT1G71120 31.529 314 183 11 30 332 29 321 7.47e-36 134
MS.gene29675.t1 AT5G33370 34.171 199 126 3 32 226 30 227 7.55e-36 133
MS.gene29675.t1 AT3G14225 27.619 315 203 9 32 332 37 340 2.40e-35 132
MS.gene29675.t1 AT1G71250 28.659 328 219 8 10 332 19 336 2.66e-34 130
MS.gene29675.t1 AT5G15720 30.769 273 174 8 31 297 29 292 4.02e-34 128
MS.gene29675.t1 AT1G53940 29.032 310 201 8 32 332 39 338 4.03e-34 129
MS.gene29675.t1 AT5G37690 30.293 307 197 8 10 310 4 299 7.07e-34 128
MS.gene29675.t1 AT2G19060 26.765 340 216 13 1 332 1 315 1.44e-33 127
MS.gene29675.t1 AT4G16230 33.333 207 131 3 25 226 23 227 4.01e-33 124
MS.gene29675.t1 AT2G03980 31.197 234 145 6 31 261 42 262 8.35e-33 125
MS.gene29675.t1 AT2G03980 31.197 234 145 6 31 261 42 262 8.35e-33 125
MS.gene29675.t1 AT2G03980 31.197 234 145 6 31 261 42 262 8.35e-33 125
MS.gene29675.t1 AT2G03980 31.197 234 145 6 31 261 42 262 8.35e-33 125
MS.gene29675.t1 AT1G53990 28.198 344 202 14 9 332 9 327 7.53e-32 123
MS.gene29675.t1 AT5G37690 29.316 307 192 9 10 310 4 291 1.61e-29 116
MS.gene29675.t1 AT1G71691 31.250 272 170 8 30 297 53 311 1.74e-29 115
MS.gene29675.t1 AT2G19010 27.036 307 201 9 29 332 27 313 4.24e-29 115
MS.gene29675.t1 AT2G19010 27.036 307 201 9 29 332 57 343 5.72e-29 115
MS.gene29675.t1 AT2G19050 25.402 311 201 11 29 332 28 314 2.35e-27 110
MS.gene29675.t1 AT2G04020 31.416 226 134 8 31 243 42 259 2.62e-27 108
MS.gene29675.t1 AT1G53940 29.412 272 173 8 32 297 39 297 2.71e-27 109
MS.gene29675.t1 AT2G04020 32.500 200 125 6 31 226 42 235 9.53e-27 108
MS.gene29675.t1 AT2G19050 26.154 260 171 8 29 284 28 270 2.74e-25 103
MS.gene29675.t1 AT1G54020 29.577 284 167 11 32 310 33 288 4.15e-25 104
MS.gene29675.t1 AT3G48460 26.316 342 215 15 9 331 18 341 8.09e-25 103
MS.gene29675.t1 AT4G30140 25.649 308 202 8 29 332 30 314 1.39e-24 102
MS.gene29675.t1 AT1G54010 28.115 313 189 10 8 310 10 296 3.10e-24 102
MS.gene29675.t1 AT5G14450 28.972 321 201 14 1 307 11 318 2.24e-23 100
MS.gene29675.t1 AT3G26430 27.241 290 189 10 31 309 30 308 2.62e-23 99.8
MS.gene29675.t1 AT3G14220 25.879 313 205 12 3 310 2 292 9.43e-23 98.2
MS.gene29675.t1 AT1G31550 27.139 339 219 14 10 331 15 342 2.00e-22 97.4
MS.gene29675.t1 AT1G28580 26.074 349 213 17 9 331 15 344 3.10e-22 97.1
MS.gene29675.t1 AT1G56670 25.439 342 220 11 8 331 12 336 6.53e-22 95.9
MS.gene29675.t1 AT1G28610 25.568 352 226 16 1 331 1 337 9.77e-22 95.5
MS.gene29675.t1 AT1G28570 27.298 359 206 19 4 331 7 341 1.05e-21 95.5
MS.gene29675.t1 AT1G54000 27.796 313 190 12 8 310 10 296 1.11e-21 95.5
MS.gene29675.t1 AT5G15720 26.721 247 169 6 92 332 56 296 1.27e-21 94.4
MS.gene29675.t1 AT1G09390 29.021 286 181 10 31 309 36 306 6.00e-21 93.2
MS.gene29675.t1 AT5G03610 24.679 312 198 12 33 332 44 330 6.19e-21 92.8
MS.gene29675.t1 AT3G14210 28.328 293 166 14 32 310 36 298 1.86e-20 92.0
MS.gene29675.t1 AT1G54790 26.129 310 207 12 10 309 10 307 4.55e-20 90.5
MS.gene29675.t1 AT1G71691 26.772 254 170 7 83 332 4 245 1.38e-19 87.8
MS.gene29675.t1 AT2G27360 26.168 321 204 13 32 331 33 341 1.47e-19 89.4
MS.gene29675.t1 AT1G67830 26.117 291 191 11 31 309 29 307 2.14e-19 88.6
MS.gene29675.t1 AT1G54030 24.601 313 198 12 25 332 47 326 4.25e-19 88.2
MS.gene29675.t1 AT1G31550 26.036 338 221 14 10 331 15 339 1.34e-18 86.7
MS.gene29675.t1 AT3G05180 25.000 292 197 9 28 309 32 311 1.65e-18 86.3
MS.gene29675.t1 AT1G56670 26.733 303 192 10 8 297 12 297 2.52e-18 84.3
MS.gene29675.t1 AT4G01130 25.347 288 194 8 32 309 34 310 3.28e-18 85.1
MS.gene29675.t1 AT1G28650 23.055 347 229 12 8 331 13 344 5.00e-18 84.7
MS.gene29675.t1 AT1G28640 22.727 352 232 13 4 331 7 342 6.90e-18 84.3
MS.gene29675.t1 AT1G28660 24.148 352 227 11 4 331 7 342 6.94e-18 84.3
MS.gene29675.t1 AT3G09930 23.962 313 200 13 33 332 40 327 8.64e-18 83.6
MS.gene29675.t1 AT3G09930 23.962 313 200 13 33 332 40 327 8.64e-18 83.6
MS.gene29675.t1 AT5G03600 23.659 317 209 10 22 332 4 293 7.19e-17 80.9
MS.gene29675.t1 AT5G03600 23.659 317 209 10 22 332 39 328 1.05e-16 80.5
MS.gene29675.t1 AT1G28660 24.148 352 226 12 4 331 7 341 1.14e-16 80.9
MS.gene29675.t1 AT4G16220 30.233 172 76 3 25 161 23 185 3.22e-16 77.8
MS.gene29675.t1 AT5G45910 25.153 326 209 13 29 330 27 341 4.27e-16 79.0
MS.gene29675.t1 AT1G28670 22.899 345 241 11 4 331 7 343 1.56e-14 74.3
MS.gene29675.t1 AT4G01130 25.000 276 186 8 32 297 34 298 4.77e-14 72.4
MS.gene29675.t1 AT2G36325 24.606 317 198 12 29 332 44 332 6.93e-14 72.4
MS.gene29675.t1 AT1G54790 25.402 311 208 15 9 309 10 306 7.50e-14 72.4
MS.gene29675.t1 AT1G54020 29.825 228 130 10 87 310 1 202 9.58e-14 71.2
MS.gene29675.t1 AT1G54020 29.825 228 130 10 87 310 1 202 9.58e-14 71.2
MS.gene29675.t1 AT1G54020 29.825 228 130 10 87 310 1 202 9.58e-14 71.2
MS.gene29675.t1 AT3G62280 28.090 267 162 12 28 284 32 278 7.51e-13 68.6
MS.gene29675.t1 AT1G54030 23.985 271 170 10 25 290 47 286 3.01e-12 67.0
MS.gene29675.t1 AT3G27950 24.221 289 189 9 31 306 31 302 3.97e-12 67.0
MS.gene29675.t1 AT1G54020 29.697 165 101 6 149 310 1 153 4.44e-11 62.8
MS.gene29675.t1 AT4G01130 27.083 144 95 3 174 309 83 224 7.06e-11 62.8

Find 103 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAAAATTCTGAAGATTT+TGG 0.137422 5.1:+65272792 None:intergenic
TTAATAATAATTACCGTATT+TGG 0.153561 5.1:+65271879 None:intergenic
TTTGCAATAAATTATGAATA+AGG 0.197595 5.1:+65271975 None:intergenic
CTTAGCTAAGGTCTTGGATT+TGG 0.218569 5.1:-65273005 MS.gene29675:CDS
TAGCCAAAAGCTAGGAATTA+AGG 0.243178 5.1:-65273131 MS.gene29675:CDS
AATCCTTAATTCCTAGCTTT+TGG 0.252890 5.1:+65273128 None:intergenic
TAATCGCAAAGAACGCATTT+TGG 0.271306 5.1:+65272903 None:intergenic
TTAGCTAAGGTCTTGGATTT+GGG 0.291860 5.1:-65273004 MS.gene29675:CDS
GAGGAATGAAGAGGCTGTTT+TGG 0.301529 5.1:+65273372 None:intergenic
TGAATCTACCGGTTGGGATT+TGG 0.311553 5.1:+65273182 None:intergenic
GTCTATGTGGTTGTTGTTGC+CGG 0.316265 5.1:+65273252 None:intergenic
TATGAATAAGGATTGAAGTT+TGG 0.318286 5.1:+65271987 None:intergenic
ACCGATAATGATTTGTTAAC+CGG 0.318424 5.1:-65273076 MS.gene29675:CDS
TTGTTAACCGGGGTTAGTTT+TGG 0.337441 5.1:-65273064 MS.gene29675:CDS
CACAAGAAGGGTACTCAGTT+TGG 0.339064 5.1:-65271456 MS.gene29675:CDS
TACCGTATTTGGTTGGGTAT+TGG 0.342544 5.1:+65271890 None:intergenic
CTACCGGTTGGGATTTGGTT+TGG 0.343428 5.1:+65273187 None:intergenic
TTGAAGGCAATGGCTGAGTT+TGG 0.349295 5.1:+65273319 None:intergenic
CGTGAAGGATGCTGTGGAAC+AGG 0.354474 5.1:-65271567 MS.gene29675:CDS
AAACACGTTGGAGCCAGTTT+TGG 0.367374 5.1:+65272049 None:intergenic
CTATACACCCATTCTTGATA+TGG 0.385458 5.1:-65271914 MS.gene29675:CDS
AATAATTACCGTATTTGGTT+GGG 0.385671 5.1:+65271884 None:intergenic
GATCCATCCAAGTATCTGTT+TGG 0.385795 5.1:-65271495 MS.gene29675:CDS
CCCGGTTAACAAATCATTAT+CGG 0.388677 5.1:+65273075 None:intergenic
ATTAATATCCAGAGAATGTA+TGG 0.396227 5.1:-65272159 MS.gene29675:intron
GTTGTTGTTGCCGGCATCAA+TGG 0.402175 5.1:+65273261 None:intergenic
GCATCTCACCTAGCCAAAAC+TGG 0.406343 5.1:-65272062 MS.gene29675:CDS
ATGTCAAGTTCATTGCAAAC+AGG 0.421844 5.1:+65271528 None:intergenic
GGCTGAGTTTGGCATTGAAA+TGG 0.422931 5.1:+65273330 None:intergenic
CGTTCTTTGCGATTAGCATT+GGG 0.423854 5.1:-65272895 MS.gene29675:CDS
AACAGATACTTGGATGGATC+AGG 0.423964 5.1:+65271498 None:intergenic
ATCCATCCAAGTATCTGTTT+GGG 0.431923 5.1:-65271494 MS.gene29675:CDS
TCGCCGAAGGCAAAGATGGC+AGG 0.432688 5.1:+65273289 None:intergenic
AGTGGCCTTAGCTAAGGTCT+TGG 0.434034 5.1:-65273011 MS.gene29675:CDS
CTCTCAATCGTCATTAGTAT+TGG 0.434339 5.1:+65272084 None:intergenic
CGTTTGTGAATCTACCGGTT+GGG 0.439505 5.1:+65273176 None:intergenic
CAGCATCCCAAACAGATACT+TGG 0.458301 5.1:+65271488 None:intergenic
TAATAATTACCGTATTTGGT+TGG 0.463965 5.1:+65271883 None:intergenic
ACCCCTGCCATCTTTGCCTT+CGG 0.464714 5.1:-65273292 MS.gene29675:CDS
ATAATAGAAGAGAGAGGTAG+AGG 0.471992 5.1:+65273353 None:intergenic
GCGTTCTTTGCGATTAGCAT+TGG 0.475649 5.1:-65272896 MS.gene29675:CDS
GTCCAATACCCAACCAAATA+CGG 0.478205 5.1:-65271892 MS.gene29675:intron
CCGTTTGTGAATCTACCGGT+TGG 0.478281 5.1:+65273175 None:intergenic
GGAGTCGCCGAAGGCAAAGA+TGG 0.493618 5.1:+65273285 None:intergenic
CCTTAGCTAAGGCCACTGTT+TGG 0.505645 5.1:+65273017 None:intergenic
CCGATAATGATTTGTTAACC+GGG 0.505924 5.1:-65273075 MS.gene29675:CDS
GCTCGAAGGTTTATGTTGGC+AGG 0.509716 5.1:-65272129 MS.gene29675:CDS
AATCATTATCGGTAACTTGA+GGG 0.510339 5.1:+65273086 None:intergenic
TTTCCAAACCAAATCCCAAC+CGG 0.516644 5.1:-65273190 MS.gene29675:CDS
GTATTGGACCATATCAAGAA+TGG 0.519077 5.1:+65271906 None:intergenic
ATCCAGAGAATGTATGGAGC+AGG 0.519950 5.1:-65272153 MS.gene29675:intron
AAAATGCAATCTTAGCATCA+TGG 0.522280 5.1:+65271944 None:intergenic
GGCGACTCCACCATTGATGC+CGG 0.524779 5.1:-65273271 MS.gene29675:CDS
CTTTCCGTTTGTGAATCTAC+CGG 0.530447 5.1:+65273171 None:intergenic
TTGGCAGGTCTCCCTCCAGT+TGG 0.534096 5.1:-65272114 MS.gene29675:CDS
AAATCATTATCGGTAACTTG+AGG 0.538713 5.1:+65273085 None:intergenic
ATGCTGTGGAACAGGGACAT+TGG 0.539454 5.1:-65271559 MS.gene29675:CDS
CGCCGAAGGCAAAGATGGCA+GGG 0.539960 5.1:+65273290 None:intergenic
TATTGGACCATATCAAGAAT+GGG 0.542270 5.1:+65271907 None:intergenic
AGTATTGGAAGACAACCAAC+TGG 0.543135 5.1:+65272099 None:intergenic
CTGAGTACCCTTCTTGTGTA+GGG 0.543859 5.1:+65271461 None:intergenic
CGTTGTGACCACTTGCCCTA+CGG 0.547938 5.1:-65273220 MS.gene29675:CDS
TTTGAGAATCAATGTTGTGT+TGG 0.548194 5.1:+65272019 None:intergenic
GTTTGGAAAATCACGACCGT+AGG 0.552596 5.1:+65273204 None:intergenic
CCAAACAGTGGCCTTAGCTA+AGG 0.553598 5.1:-65273017 MS.gene29675:CDS
GCTGTGCACCCTACACAAGA+AGG 0.554097 5.1:-65271469 MS.gene29675:CDS
ATCCTTCACGTGAATTCTCA+AGG 0.565837 5.1:+65271580 None:intergenic
ACTGAGTACCCTTCTTGTGT+AGG 0.571845 5.1:+65271460 None:intergenic
ATCAATGGTGGAGTCGCCGA+AGG 0.573448 5.1:+65273276 None:intergenic
TGTTTGAACAAGCTTTGTTG+AGG 0.574397 5.1:-65272967 MS.gene29675:CDS
AGGAGCTCGAAGGTTTATGT+TGG 0.574803 5.1:-65272133 MS.gene29675:CDS
GATTACCTTAGCCAAAAGCT+AGG 0.577099 5.1:-65273139 MS.gene29675:CDS
AGAGAGGTAGAGGAATGAAG+AGG 0.579277 5.1:+65273363 None:intergenic
ACTTGAGGGTCAAGAAAAGC+GGG 0.581751 5.1:+65273100 None:intergenic
TTTGGAAAATCACGACCGTA+GGG 0.588915 5.1:+65273205 None:intergenic
AAATGGATAATAGAAGAGAG+AGG 0.591368 5.1:+65273347 None:intergenic
GTGAAGGATGCTGTGGAACA+GGG 0.602235 5.1:-65271566 MS.gene29675:CDS
CCCCGAGCCAAAACTAACCC+CGG 0.606961 5.1:+65273057 None:intergenic
GTTGTTGCCGGCATCAATGG+TGG 0.608298 5.1:+65273264 None:intergenic
GTGGAACAGGGACATTGGAG+TGG 0.608391 5.1:-65271554 MS.gene29675:CDS
AACTTGAGGGTCAAGAAAAG+CGG 0.612386 5.1:+65273099 None:intergenic
AATCACGACCGTAGGGCAAG+TGG 0.612416 5.1:+65273212 None:intergenic
ACAGATACTTGGATGGATCA+GGG 0.614768 5.1:+65271499 None:intergenic
GCCGAAGGCAAAGATGGCAG+GGG 0.615010 5.1:+65273291 None:intergenic
CAAATCCAAGACCTTAGCTA+AGG 0.617591 5.1:+65273006 None:intergenic
CCAACCGGTAGATTCACAAA+CGG 0.620096 5.1:-65273175 MS.gene29675:CDS
TGTCAAGTTCATTGCAAACA+GGG 0.628502 5.1:+65271529 None:intergenic
TGGAACAGGGACATTGGAGT+GGG 0.633304 5.1:-65271553 MS.gene29675:CDS
GGCCTTGAGAATTCACGTGA+AGG 0.633689 5.1:-65271582 MS.gene29675:CDS
AACGCATTGCGGTGTCTATG+TGG 0.635609 5.1:+65273239 None:intergenic
CTGTGCACCCTACACAAGAA+GGG 0.648737 5.1:-65271468 MS.gene29675:CDS
TTGGAAGACAACCAACTGGA+GGG 0.649150 5.1:+65272103 None:intergenic
AATCTTAGCATCATGGAGTG+TGG 0.656184 5.1:+65271951 None:intergenic
CGATAATGATTTGTTAACCG+GGG 0.659598 5.1:-65273074 MS.gene29675:CDS
AATTCACGTGAAGGATGCTG+TGG 0.660408 5.1:-65271573 MS.gene29675:CDS
ATCCCAAACAGATACTTGGA+TGG 0.664741 5.1:+65271492 None:intergenic
ATGACACAAAATACTCCACA+TGG 0.677728 5.1:-65272845 MS.gene29675:CDS
AGGTTTGGATAGCCAAACAG+TGG 0.677829 5.1:-65273029 MS.gene29675:CDS
ATTGGAAGACAACCAACTGG+AGG 0.686502 5.1:+65272102 None:intergenic
GTTGGTCGTTGCAAACACGT+TGG 0.688097 5.1:+65272037 None:intergenic
TGTATGGAGCAGGAGCTCGA+AGG 0.691804 5.1:-65272143 MS.gene29675:CDS
CAAGTGGTCACAACGCATTG+CGG 0.722575 5.1:+65273228 None:intergenic
TAAGATGAAACAGAACCATG+TGG 0.723069 5.1:+65272830 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAATAATTACCGTATT+TGG + chr5.1:65272955-65272974 None:intergenic 15.0%
!! TTTGCAATAAATTATGAATA+AGG + chr5.1:65272859-65272878 None:intergenic 15.0%
!!! AAATTTTCCTAACAAATTTT+AGG + chr5.1:65272355-65272374 None:intergenic 15.0%
!!! AATTTTCCTAACAAATTTTA+GGG + chr5.1:65272354-65272373 None:intergenic 15.0%
!!! AGAAAAACAATAACAAATTT+TGG - chr5.1:65273049-65273068 MS.gene29675:CDS 15.0%
!! AAACATAATATTATATGCAG+AGG - chr5.1:65273122-65273141 MS.gene29675:CDS 20.0%
!! AACATAATATTATATGCAGA+GGG - chr5.1:65273123-65273142 MS.gene29675:CDS 20.0%
!! CATATTCTATAATGAAGTTA+AGG + chr5.1:65272199-65272218 None:intergenic 20.0%
!! TGTACTATGCTTAAAAAAAA+GGG + chr5.1:65272430-65272449 None:intergenic 20.0%
!! TTGTACTATGCTTAAAAAAA+AGG + chr5.1:65272431-65272450 None:intergenic 20.0%
!!! AAAAATTGTTGGTAATGAAA+AGG - chr5.1:65271892-65271911 MS.gene29675:intron 20.0%
!!! ATTTAACCCTAAAATTTGTT+AGG - chr5.1:65272345-65272364 MS.gene29675:intron 20.0%
!!! TGTTAATACTAACTTGATTT+TGG + chr5.1:65272246-65272265 None:intergenic 20.0%
! AATAATTACCGTATTTGGTT+GGG + chr5.1:65272950-65272969 None:intergenic 25.0%
! ACATAATATTATATGCAGAG+GGG - chr5.1:65273124-65273143 MS.gene29675:CDS 25.0%
! AGATCACTTTATAGAAAAAC+TGG + chr5.1:65273179-65273198 None:intergenic 25.0%
! ATAGAATATGATCAATCGTT+TGG - chr5.1:65272209-65272228 MS.gene29675:intron 25.0%
! ATCACTTTATAGAAAAACTG+GGG + chr5.1:65273177-65273196 None:intergenic 25.0%
! ATTAATATCCAGAGAATGTA+TGG - chr5.1:65272672-65272691 MS.gene29675:intron 25.0%
! ATTCTACTTTCATCTAAACA+TGG - chr5.1:65272558-65272577 MS.gene29675:intron 25.0%
! ATTCTATAATGAAGTTAAGG+AGG + chr5.1:65272196-65272215 None:intergenic 25.0%
! GATCACTTTATAGAAAAACT+GGG + chr5.1:65273178-65273197 None:intergenic 25.0%
! TAATAATTACCGTATTTGGT+TGG + chr5.1:65272951-65272970 None:intergenic 25.0%
! TAGAATATGATCAATCGTTT+GGG - chr5.1:65272210-65272229 MS.gene29675:intron 25.0%
! TATGAATAAGGATTGAAGTT+TGG + chr5.1:65272847-65272866 None:intergenic 25.0%
! TTCTATAATGAAGTTAAGGA+GGG + chr5.1:65272195-65272214 None:intergenic 25.0%
! TTGAGGATAAGAAAAATTGT+TGG - chr5.1:65271881-65271900 MS.gene29675:intron 25.0%
!! AAACTCCTAGATTATGTTTT+AGG + chr5.1:65272282-65272301 None:intergenic 25.0%
!! AAATCTTCAGAATTTTGTTC+AGG - chr5.1:65272042-65272061 MS.gene29675:CDS 25.0%
!! AACTCCTAGATTATGTTTTA+GGG + chr5.1:65272281-65272300 None:intergenic 25.0%
!!! GAACAAAATTCTGAAGATTT+TGG + chr5.1:65272042-65272061 None:intergenic 25.0%
!!! TAAAAAAAAGGGTACTACTT+TGG + chr5.1:65272419-65272438 None:intergenic 25.0%
AAAATGCAATCTTAGCATCA+TGG + chr5.1:65272890-65272909 None:intergenic 30.0%
AAATCATTATCGGTAACTTG+AGG + chr5.1:65271749-65271768 None:intergenic 30.0%
AAATGGATAATAGAAGAGAG+AGG + chr5.1:65271487-65271506 None:intergenic 30.0%
AATCATTATCGGTAACTTGA+GGG + chr5.1:65271748-65271767 None:intergenic 30.0%
CTTAGTAAAAAGTGAGACTT+TGG + chr5.1:65272501-65272520 None:intergenic 30.0%
TATTGGACCATATCAAGAAT+GGG + chr5.1:65272927-65272946 None:intergenic 30.0%
TGGACACTGAAAAAAAAATC+TGG - chr5.1:65273069-65273088 MS.gene29675:CDS 30.0%
TGGCAAAATTTATTTAGCAC+TGG + chr5.1:65273215-65273234 None:intergenic 30.0%
TTTGAGAATCAATGTTGTGT+TGG + chr5.1:65272815-65272834 None:intergenic 30.0%
! TTTGCCAAATAAATTTTGCC+AGG - chr5.1:65273228-65273247 MS.gene29675:CDS 30.0%
! TTTTACTAAGAGTGGTATGT+GGG - chr5.1:65272511-65272530 MS.gene29675:intron 30.0%
! TTTTTACTAAGAGTGGTATG+TGG - chr5.1:65272510-65272529 MS.gene29675:intron 30.0%
!! AATCCTTAATTCCTAGCTTT+TGG + chr5.1:65271706-65271725 None:intergenic 30.0%
!! ACCGATAATGATTTGTTAAC+CGG - chr5.1:65271755-65271774 MS.gene29675:intron 30.0%
AAGGCCTGGCAAAATTTATT+TGG + chr5.1:65273235-65273254 None:intergenic 35.0%
ATAATAGAAGAGAGAGGTAG+AGG + chr5.1:65271481-65271500 None:intergenic 35.0%
ATAATGAAGTTAAGGAGGGA+GGG + chr5.1:65272191-65272210 None:intergenic 35.0%
ATCCATCCAAGTATCTGTTT+GGG - chr5.1:65273337-65273356 MS.gene29675:CDS 35.0%
ATGACACAAAATACTCCACA+TGG - chr5.1:65271986-65272005 MS.gene29675:CDS 35.0%
ATGTCAAGTTCATTGCAAAC+AGG + chr5.1:65273306-65273325 None:intergenic 35.0%
CCCGGTTAACAAATCATTAT+CGG + chr5.1:65271759-65271778 None:intergenic 35.0%
CGAACCCTAAAACATAATCT+AGG - chr5.1:65272274-65272293 MS.gene29675:intron 35.0%
CTATACACCCATTCTTGATA+TGG - chr5.1:65272917-65272936 MS.gene29675:CDS 35.0%
CTCTCAATCGTCATTAGTAT+TGG + chr5.1:65272750-65272769 None:intergenic 35.0%
GTATTGGACCATATCAAGAA+TGG + chr5.1:65272928-65272947 None:intergenic 35.0%
TAAGATGAAACAGAACCATG+TGG + chr5.1:65272004-65272023 None:intergenic 35.0%
TAGCCAAAAGCTAGGAATTA+AGG - chr5.1:65271700-65271719 MS.gene29675:intron 35.0%
TATAATGAAGTTAAGGAGGG+AGG + chr5.1:65272192-65272211 None:intergenic 35.0%
TGTCAAGTTCATTGCAAACA+GGG + chr5.1:65273305-65273324 None:intergenic 35.0%
TTAGCTAAGGTCTTGGATTT+GGG - chr5.1:65271827-65271846 MS.gene29675:intron 35.0%
! TAATCGCAAAGAACGCATTT+TGG + chr5.1:65271931-65271950 None:intergenic 35.0%
!! CCGATAATGATTTGTTAACC+GGG - chr5.1:65271756-65271775 MS.gene29675:intron 35.0%
!! CGATAATGATTTGTTAACCG+GGG - chr5.1:65271757-65271776 MS.gene29675:intron 35.0%
!! GGCATTTGATTTGTATCTCT+AGG - chr5.1:65272532-65272551 MS.gene29675:intron 35.0%
!! TAATTCCTAGCTTTTGGCTA+AGG + chr5.1:65271700-65271719 None:intergenic 35.0%
!! TAGCTTTTGGCTAAGGTAAT+CGG + chr5.1:65271693-65271712 None:intergenic 35.0%
!! TGTTTGAACAAGCTTTGTTG+AGG - chr5.1:65271864-65271883 MS.gene29675:intron 35.0%
!! TTTAGCACTGGCAAATTCTA+AGG + chr5.1:65273203-65273222 None:intergenic 35.0%
!!! GTCTCACTTTTTACTAAGAG+TGG - chr5.1:65272503-65272522 MS.gene29675:intron 35.0%
AACAGATACTTGGATGGATC+AGG + chr5.1:65273336-65273355 None:intergenic 40.0%
AACTTGAGGGTCAAGAAAAG+CGG + chr5.1:65271735-65271754 None:intergenic 40.0%
AATCTTAGCATCATGGAGTG+TGG + chr5.1:65272883-65272902 None:intergenic 40.0%
ACAGATACTTGGATGGATCA+GGG + chr5.1:65273335-65273354 None:intergenic 40.0%
ATCCCAAACAGATACTTGGA+TGG + chr5.1:65273342-65273361 None:intergenic 40.0%
ATCCTTCACGTGAATTCTCA+AGG + chr5.1:65273254-65273273 None:intergenic 40.0%
CAAATCCAAGACCTTAGCTA+AGG + chr5.1:65271828-65271847 None:intergenic 40.0%
CGTTCTTTGCGATTAGCATT+GGG - chr5.1:65271936-65271955 MS.gene29675:CDS 40.0%
CTTAGCTAAGGTCTTGGATT+TGG - chr5.1:65271826-65271845 MS.gene29675:intron 40.0%
CTTTCCGTTTGTGAATCTAC+CGG + chr5.1:65271663-65271682 None:intergenic 40.0%
GATCCATCCAAGTATCTGTT+TGG - chr5.1:65273336-65273355 MS.gene29675:CDS 40.0%
GATTACCTTAGCCAAAAGCT+AGG - chr5.1:65271692-65271711 MS.gene29675:intron 40.0%
GTCCAATACCCAACCAAATA+CGG - chr5.1:65272939-65272958 MS.gene29675:CDS 40.0%
TACCGTATTTGGTTGGGTAT+TGG + chr5.1:65272944-65272963 None:intergenic 40.0%
TTTCCAAACCAAATCCCAAC+CGG - chr5.1:65271641-65271660 MS.gene29675:intron 40.0%
TTTGGAAAATCACGACCGTA+GGG + chr5.1:65271629-65271648 None:intergenic 40.0%
! AGAGAGAGAGAGAGTACATA+TGG + chr5.1:65272139-65272158 None:intergenic 40.0%
! AGTATTGGAAGACAACCAAC+TGG + chr5.1:65272735-65272754 None:intergenic 40.0%
!! TTTTGGCTAAGGTAATCGGT+TGG + chr5.1:65271689-65271708 None:intergenic 40.0%
!!! AGGGGTTTTATTGAAGGCAA+TGG + chr5.1:65271525-65271544 None:intergenic 40.0%
!!! TTGTTAACCGGGGTTAGTTT+TGG - chr5.1:65271767-65271786 MS.gene29675:intron 40.0%
AATTCACGTGAAGGATGCTG+TGG - chr5.1:65273258-65273277 MS.gene29675:CDS 45.0%
ACTGAGTACCCTTCTTGTGT+AGG + chr5.1:65273374-65273393 None:intergenic 45.0%
ACTTGAGGGTCAAGAAAAGC+GGG + chr5.1:65271734-65271753 None:intergenic 45.0%
AGAGAGGTAGAGGAATGAAG+AGG + chr5.1:65271471-65271490 None:intergenic 45.0%
AGGAGCTCGAAGGTTTATGT+TGG - chr5.1:65272698-65272717 MS.gene29675:intron 45.0%
AGGTTTGGATAGCCAAACAG+TGG - chr5.1:65271802-65271821 MS.gene29675:intron 45.0%
ATATTATATGCAGAGGGGCC+AGG - chr5.1:65273129-65273148 MS.gene29675:CDS 45.0%
ATCCAGAGAATGTATGGAGC+AGG - chr5.1:65272678-65272697 MS.gene29675:intron 45.0%
ATTGGAAGACAACCAACTGG+AGG + chr5.1:65272732-65272751 None:intergenic 45.0%
CAGCATCCCAAACAGATACT+TGG + chr5.1:65273346-65273365 None:intergenic 45.0%
CCAACCGGTAGATTCACAAA+CGG - chr5.1:65271656-65271675 MS.gene29675:intron 45.0%
CTGAGTACCCTTCTTGTGTA+GGG + chr5.1:65273373-65273392 None:intergenic 45.0%
GCGTTCTTTGCGATTAGCAT+TGG - chr5.1:65271935-65271954 MS.gene29675:CDS 45.0%
GTTTGGAAAATCACGACCGT+AGG + chr5.1:65271630-65271649 None:intergenic 45.0%
TTGAAGGCAATGGCTGAGTT+TGG + chr5.1:65271515-65271534 None:intergenic 45.0%
TTGGAAGACAACCAACTGGA+GGG + chr5.1:65272731-65272750 None:intergenic 45.0%
! AAACACGTTGGAGCCAGTTT+TGG + chr5.1:65272785-65272804 None:intergenic 45.0%
! CGTTTGTGAATCTACCGGTT+GGG + chr5.1:65271658-65271677 None:intergenic 45.0%
! GAGGAATGAAGAGGCTGTTT+TGG + chr5.1:65271462-65271481 None:intergenic 45.0%
! GGCTGAGTTTGGCATTGAAA+TGG + chr5.1:65271504-65271523 None:intergenic 45.0%
! GTCTATGTGGTTGTTGTTGC+CGG + chr5.1:65271582-65271601 None:intergenic 45.0%
! TGAATCTACCGGTTGGGATT+TGG + chr5.1:65271652-65271671 None:intergenic 45.0%
!! CACAAGAAGGGTACTCAGTT+TGG - chr5.1:65273375-65273394 MS.gene29675:CDS 45.0%
!!! GATGGCAGGGGTTTTATTGA+AGG + chr5.1:65271531-65271550 None:intergenic 45.0%
AACGCATTGCGGTGTCTATG+TGG + chr5.1:65271595-65271614 None:intergenic 50.0%
AAGTTAAGGAGGGAGGGAGA+GGG + chr5.1:65272185-65272204 None:intergenic 50.0%
AGTGCTCCGAGATTCAAACC+TGG + chr5.1:65273150-65273169 None:intergenic 50.0%
ATGCTGTGGAACAGGGACAT+TGG - chr5.1:65273272-65273291 MS.gene29675:CDS 50.0%
CAAGTGGTCACAACGCATTG+CGG + chr5.1:65271606-65271625 None:intergenic 50.0%
CCGTTTGTGAATCTACCGGT+TGG + chr5.1:65271659-65271678 None:intergenic 50.0%
CCTTAGCTAAGGCCACTGTT+TGG + chr5.1:65271817-65271836 None:intergenic 50.0%
CTCCTGCTCCATACATTCTC+TGG + chr5.1:65272683-65272702 None:intergenic 50.0%
CTGTGCACCCTACACAAGAA+GGG - chr5.1:65273363-65273382 MS.gene29675:CDS 50.0%
GCATCTCACCTAGCCAAAAC+TGG - chr5.1:65272769-65272788 MS.gene29675:intron 50.0%
GCTCGAAGGTTTATGTTGGC+AGG - chr5.1:65272702-65272721 MS.gene29675:intron 50.0%
GGCCTTGAGAATTCACGTGA+AGG - chr5.1:65273249-65273268 MS.gene29675:CDS 50.0%
GTGAAGGATGCTGTGGAACA+GGG - chr5.1:65273265-65273284 MS.gene29675:CDS 50.0%
GTTGGTCGTTGCAAACACGT+TGG + chr5.1:65272797-65272816 None:intergenic 50.0%
TCACGTGAATTCTCAAGGCC+TGG + chr5.1:65273249-65273268 None:intergenic 50.0%
TGGAACAGGGACATTGGAGT+GGG - chr5.1:65273278-65273297 MS.gene29675:CDS 50.0%
! AGTGGCCTTAGCTAAGGTCT+TGG - chr5.1:65271820-65271839 MS.gene29675:intron 50.0%
! CCAAACAGTGGCCTTAGCTA+AGG - chr5.1:65271814-65271833 MS.gene29675:intron 50.0%
! CTACCGGTTGGGATTTGGTT+TGG + chr5.1:65271647-65271666 None:intergenic 50.0%
! GTTGTTGTTGCCGGCATCAA+TGG + chr5.1:65271573-65271592 None:intergenic 50.0%
!!! AACCGGGGTTAGTTTTGGCT+CGG - chr5.1:65271772-65271791 MS.gene29675:intron 50.0%
AATCACGACCGTAGGGCAAG+TGG + chr5.1:65271622-65271641 None:intergenic 55.0%
ACCCCTGCCATCTTTGCCTT+CGG - chr5.1:65271539-65271558 MS.gene29675:CDS 55.0%
CGTGAAGGATGCTGTGGAAC+AGG - chr5.1:65273264-65273283 MS.gene29675:CDS 55.0%
CGTTGTGACCACTTGCCCTA+CGG - chr5.1:65271611-65271630 MS.gene29675:intron 55.0%
GAAGTTAAGGAGGGAGGGAG+AGG + chr5.1:65272186-65272205 None:intergenic 55.0%
GAGGGGCCAGGTTTGAATCT+CGG - chr5.1:65273141-65273160 MS.gene29675:CDS 55.0%
GCTGTGCACCCTACACAAGA+AGG - chr5.1:65273362-65273381 MS.gene29675:CDS 55.0%
GTGGAACAGGGACATTGGAG+TGG - chr5.1:65273277-65273296 MS.gene29675:CDS 55.0%
GTTGTTGCCGGCATCAATGG+TGG + chr5.1:65271570-65271589 None:intergenic 55.0%
TGTATGGAGCAGGAGCTCGA+AGG - chr5.1:65272688-65272707 MS.gene29675:intron 55.0%
! ATCAATGGTGGAGTCGCCGA+AGG + chr5.1:65271558-65271577 None:intergenic 55.0%
!!! ACCGGGGTTAGTTTTGGCTC+GGG - chr5.1:65271773-65271792 MS.gene29675:intron 55.0%
!!! CGTTGGAGCCAGTTTTGGCT+AGG + chr5.1:65272780-65272799 None:intergenic 55.0%
CCCCGAGCCAAAACTAACCC+CGG + chr5.1:65271777-65271796 None:intergenic 60.0%
CGCCGAAGGCAAAGATGGCA+GGG + chr5.1:65271544-65271563 None:intergenic 60.0%
GCCGAAGGCAAAGATGGCAG+GGG + chr5.1:65271543-65271562 None:intergenic 60.0%
GGAGTCGCCGAAGGCAAAGA+TGG + chr5.1:65271549-65271568 None:intergenic 60.0%
GGCGACTCCACCATTGATGC+CGG - chr5.1:65271560-65271579 MS.gene29675:CDS 60.0%
TCGCCGAAGGCAAAGATGGC+AGG + chr5.1:65271545-65271564 None:intergenic 60.0%
TTGGCAGGTCTCCCTCCAGT+TGG - chr5.1:65272717-65272736 MS.gene29675:intron 60.0%
!!! AGTTTTGGCTCGGGGGGTTC+AGG - chr5.1:65271782-65271801 MS.gene29675:intron 60.0%
!!! CCGGGGTTAGTTTTGGCTCG+GGG - chr5.1:65271774-65271793 MS.gene29675:intron 60.0%
!!! CGGGGTTAGTTTTGGCTCGG+GGG - chr5.1:65271775-65271794 MS.gene29675:intron 60.0%
!!! GGGGTTAGTTTTGGCTCGGG+GGG - chr5.1:65271776-65271795 MS.gene29675:intron 60.0%
AAGGAGGGAGGGAGAGGGAG+AGG + chr5.1:65272180-65272199 None:intergenic 65.0%
AGGAGGGAGGGAGAGGGAGA+GGG + chr5.1:65272179-65272198 None:intergenic 65.0%
! TGGCTCGGGGGGTTCAGGTT+TGG - chr5.1:65271787-65271806 MS.gene29675:intron 65.0%
AGGGAGAGGGAGAGGGGGAG+GGG + chr5.1:65272172-65272191 None:intergenic 70.0%
GAGGGAGAGGGAGAGGGGGA+GGG + chr5.1:65272173-65272192 None:intergenic 70.0%
GAGGGAGGGAGAGGGAGAGG+GGG + chr5.1:65272177-65272196 None:intergenic 70.0%
GGAGGGAGGGAGAGGGAGAG+GGG + chr5.1:65272178-65272197 None:intergenic 70.0%
AGGGAGAGGGGGAGGGGGGA+GGG + chr5.1:65272166-65272185 None:intergenic 75.0%
GGAGAGGGAGAGGGGGAGGG+GGG + chr5.1:65272170-65272189 None:intergenic 75.0%
GGAGGGAGAGGGAGAGGGGG+AGG + chr5.1:65272174-65272193 None:intergenic 75.0%
GGGAGAGGGAGAGGGGGAGG+GGG + chr5.1:65272171-65272190 None:intergenic 75.0%
! GAGGGAGAGGGGGAGGGGGG+AGG + chr5.1:65272167-65272186 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 65271452 65273401 65271452 ID=MS.gene29675
chr5.1 mRNA 65271452 65273401 65271452 ID=MS.gene29675.t1;Parent=MS.gene29675
chr5.1 exon 65272790 65273401 65272790 ID=MS.gene29675.t1.exon1;Parent=MS.gene29675.t1
chr5.1 CDS 65272790 65273401 65272790 ID=cds.MS.gene29675.t1;Parent=MS.gene29675.t1
chr5.1 exon 65271893 65272169 65271893 ID=MS.gene29675.t1.exon2;Parent=MS.gene29675.t1
chr5.1 CDS 65271893 65272169 65271893 ID=cds.MS.gene29675.t1;Parent=MS.gene29675.t1
chr5.1 exon 65271452 65271603 65271452 ID=MS.gene29675.t1.exon3;Parent=MS.gene29675.t1
chr5.1 CDS 65271452 65271603 65271452 ID=cds.MS.gene29675.t1;Parent=MS.gene29675.t1
Gene Sequence

>MS.gene29675

ATGGCATCCAAAACAGCCTCTTCATTCCTCTACCTCTCTCTTCTATTATCCATTTCAATGCCAAACTCAGCCATTGCCTTCAATAAAACCCCTGCCATCTTTGCCTTCGGCGACTCCACCATTGATGCCGGCAACAACAACCACATAGACACCGCAATGCGTTGTGACCACTTGCCCTACGGTCGTGATTTTCCAAACCAAATCCCAACCGGTAGATTCACAAACGGAAAGTTACCAACCGATTACCTTAGCCAAAAGCTAGGAATTAAGGATTTATTGCCCGCTTTTCTTGACCCTCAAGTTACCGATAATGATTTGTTAACCGGGGTTAGTTTTGGCTCGGGGGGTTCAGGTTTGGATAGCCAAACAGTGGCCTTAGCTAAGGTCTTGGATTTGGGTACACAATTTCAGTTGTTTGAACAAGCTTTGTTGAGGATAAGAAAAATTGTTGGTAATGAAAAGGCTAAAGATATAATCCAAAATGCGTTCTTTGCGATTAGCATTGGGACTAATGATATGTTGTACAGTGTTTATATGACACAAAATACTCCACATGGTTCTGTTTCATCTTATCAAGATTTTATGCTCCAAAATCTTCAGAATTTTGTTCAGGTTTGTATTTTATTTTAGATTTTTTAGATATATAAAATACGACAAAGTTTATGCATCATTACTAATTTTCAGCCATATGTACTCTCTCTCTCTCTCTCTCCCTCCCCCCTCCCCCTCTCCCTCTCCCTCCCTCCTTAACTTCATTATAGAATATGATCAATCGTTTGGGTTTAAAGAATCCAAAATCAAGTTAGTATTAACATAAACTAGCGAACCCTAAAACATAATCTAGGAGTTTAGTATGTTAAATATTACATAAACTGTGTTTTGTATGTGATCATATTTAACCCTAAAATTTGTTAGGAAAATTTGTTCAATTGTTACAAAAAGCTTCATTGTACAACAAATAAAACCAAAGTAGTACCCTTTTTTTTAAGCATAGTACAAGTTTTTACAAAGCTTCACAAAAATTGAATCACTTTGATCAATTATGACCAAAGTCTCACTTTTTACTAAGAGTGGTATGTGGGCATTTGATTTGTATCTCTAGGATTATTCTACTTTCATCTAAACATGGTTCTATGTATTTACAACTTCTAATTACTATACTCGTTTAGAAAAAACTTTGATTGAGTAAATTTTTTCAATAGCAAACTAAGAATGCATTCATTAATATCCAGAGAATGTATGGAGCAGGAGCTCGAAGGTTTATGTTGGCAGGTCTCCCTCCAGTTGGTTGTCTTCCAATACTAATGACGATTGAGAGCATCTCACCTAGCCAAAACTGGCTCCAACGTGTTTGCAACGACCAACACAACATTGATTCTCAAATTTACAACACCAAACTTCAATCCTTATTCATAATTTATTGCAAAACCACACTCCATGATGCTAAGATTGCATTTTTTGATATCTATACACCCATTCTTGATATGGTCCAATACCCAACCAAATACGGTAATTATTATTAACTCACAATTTTTCATTTTTCATATTCATTATTAGAAAAATTGAATTAGAACAAAAATTAGACACGTTTGTCAAAAGAAAAACAATAACAAATTTTGGACACTGAAAAAAAAATCTGGTTGTCTCTGTATGCTTAGCTTAGTTGATAGAAACATAATATTATATGCAGAGGGGCCAGGTTTGAATCTCGGAGCACTTCGACCCCAGTTTTTCTATAAAGTGATCTACCTTAGAATTTGCCAGTGCTAAATAAATTTTGCCAAATAAATTTTGCCAGGCCTTGAGAATTCACGTGAAGGATGCTGTGGAACAGGGACATTGGAGTGGGTCCCTGTTTGCAATGAACTTGACATGATTTGCCCTGATCCATCCAAGTATCTGTTTGGGATGCTGTGCACCCTACACAAGAAGGGTACTCAGTTTGGTTAA

Protein sequence

>MS.gene29675.t1

MASKTASSFLYLSLLLSISMPNSAIAFNKTPAIFAFGDSTIDAGNNNHIDTAMRCDHLPYGRDFPNQIPTGRFTNGKLPTDYLSQKLGIKDLLPAFLDPQVTDNDLLTGVSFGSGGSGLDSQTVALAKVLDLGTQFQLFEQALLRIRKIVGNEKAKDIIQNAFFAISIGTNDMLYSVYMTQNTPHGSVSSYQDFMLQNLQNFVQRMYGAGARRFMLAGLPPVGCLPILMTIESISPSQNWLQRVCNDQHNIDSQIYNTKLQSLFIIYCKTTLHDAKIAFFDIYTPILDMVQYPTKYGLENSREGCCGTGTLEWVPVCNELDMICPDPSKYLFGMLCTLHKKGTQFG