Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29763.t1 | XP_003616838.2 | 96.4 | 587 | 21 | 0 | 1 | 587 | 33 | 619 | 0.00E+00 | 1110.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29763.t1 | Q9M219 | 26.3 | 524 | 369 | 8 | 75 | 585 | 36 | 555 | 2.3e-49 | 198.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29763.t1 | G7K7G6 | 96.4 | 587 | 21 | 0 | 1 | 587 | 1 | 587 | 0.0e+00 | 1110.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene29763.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051064 | MS.gene29763 | 0.800017 | 1.76E-48 | -1.69E-46 |
| MS.gene056403 | MS.gene29763 | 0.823638 | 1.24E-53 | -1.69E-46 |
| MS.gene05659 | MS.gene29763 | 0.810716 | 1.00E-50 | -1.69E-46 |
| MS.gene056605 | MS.gene29763 | 0.814341 | 1.62E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29763.t1 | MTR_5g084810 | 96.252 | 587 | 22 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1173 |
| MS.gene29763.t1 | MTR_7g093000 | 35.741 | 526 | 328 | 4 | 63 | 579 | 39 | 563 | 5.56e-105 | 328 |
| MS.gene29763.t1 | MTR_8g005155 | 26.515 | 528 | 367 | 10 | 65 | 575 | 29 | 552 | 6.70e-53 | 190 |
| MS.gene29763.t1 | MTR_7g080620 | 25.368 | 544 | 375 | 12 | 54 | 575 | 38 | 572 | 2.03e-44 | 169 |
| MS.gene29763.t1 | MTR_8g080990 | 20.376 | 319 | 234 | 7 | 256 | 571 | 62 | 363 | 4.60e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29763.t1 | AT4G19650 | 47.674 | 516 | 268 | 2 | 68 | 583 | 79 | 592 | 1.21e-171 | 500 |
| MS.gene29763.t1 | AT4G19650 | 45.560 | 518 | 278 | 3 | 68 | 583 | 60 | 575 | 7.27e-158 | 464 |
| MS.gene29763.t1 | AT5G45113 | 43.780 | 418 | 229 | 2 | 168 | 583 | 1 | 414 | 1.38e-116 | 353 |
| MS.gene29763.t1 | AT5G06810 | 34.972 | 529 | 342 | 2 | 53 | 581 | 55 | 581 | 1.01e-102 | 323 |
| MS.gene29763.t1 | AT5G06811 | 34.744 | 567 | 350 | 6 | 22 | 581 | 24 | 577 | 2.12e-101 | 319 |
| MS.gene29763.t1 | AT3G60400 | 26.118 | 559 | 386 | 12 | 42 | 585 | 9 | 555 | 5.65e-53 | 190 |
| MS.gene29763.t1 | AT1G74120 | 25.311 | 241 | 151 | 6 | 347 | 579 | 186 | 405 | 7.12e-11 | 65.1 |
Find 92 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCTTCCAACAACAATTT+TGG | 0.124269 | 5.3:+68570725 | None:intergenic |
| TTGAGCAAACATTCGATAAA+AGG | 0.208563 | 5.3:-68570500 | MS.gene29763:CDS |
| TTGTGACCCGCTTATTAAAT+TGG | 0.211062 | 5.3:-68570348 | MS.gene29763:CDS |
| GTGGAGAAAGAGCGGGAATT+TGG | 0.211740 | 5.3:+68571440 | None:intergenic |
| AAAAGGTTCAAATTCGTTAA+TGG | 0.216359 | 5.3:+68571213 | None:intergenic |
| ATTTCAAAATTATGAAGATT+TGG | 0.252419 | 5.3:-68570993 | MS.gene29763:CDS |
| CTTGCTGAAACTAGGGTATA+TGG | 0.266036 | 5.3:-68570312 | MS.gene29763:CDS |
| TTTGAATTACATTTCTCTTC+AGG | 0.267697 | 5.3:+68570144 | None:intergenic |
| GAATTGGGATTGAGAGTAAA+TGG | 0.269440 | 5.3:-68570868 | MS.gene29763:CDS |
| ATTCTGCATAAATCAGCTTT+TGG | 0.277612 | 5.3:+68570446 | None:intergenic |
| CTTGATTGGTTGAAAAGAAT+TGG | 0.282428 | 5.3:-68570884 | MS.gene29763:CDS |
| CTCTTCAGGATTAGAATCTT+AGG | 0.284996 | 5.3:+68570158 | None:intergenic |
| TGCCAGATTGTTGGACCTTC+AGG | 0.287973 | 5.3:+68569906 | None:intergenic |
| TTTCAAAATTATGAAGATTT+GGG | 0.292284 | 5.3:-68570992 | MS.gene29763:CDS |
| TCCATTGGAGCTTATTAGTT+TGG | 0.304432 | 5.3:-68570411 | MS.gene29763:CDS |
| AATTGTTGTTGGAAGGTTTA+GGG | 0.306412 | 5.3:-68570721 | MS.gene29763:CDS |
| GTGGCGCGTTTGATGTAAAT+TGG | 0.314083 | 5.3:+68571418 | None:intergenic |
| AAAGGTTCAAATTCGTTAAT+GGG | 0.316048 | 5.3:+68571214 | None:intergenic |
| AGGAATTAATCACACGGAAT+TGG | 0.320142 | 5.3:-68571179 | MS.gene29763:CDS |
| ATCGTCAGGGATGTTGATTT+TGG | 0.327979 | 5.3:+68571279 | None:intergenic |
| TGTTTGTTGTCCTTTGCTTT+TGG | 0.333098 | 5.3:-68570939 | MS.gene29763:CDS |
| AGAGCGGTTTGTAAGGAGTT+AGG | 0.349298 | 5.3:-68570473 | MS.gene29763:CDS |
| AGTTTGTTGTTGTTCTTGAT+TGG | 0.351137 | 5.3:-68570898 | MS.gene29763:CDS |
| TTTAATAAGCGGGTCACAAT+AGG | 0.351904 | 5.3:+68570352 | None:intergenic |
| TTTCATGTATTGTGTTATCA+TGG | 0.353729 | 5.3:-68571097 | MS.gene29763:CDS |
| AAATTGTTGTTGGAAGGTTT+AGG | 0.356796 | 5.3:-68570722 | MS.gene29763:CDS |
| AGGGAGAGGTGATCAGTTAC+AGG | 0.358936 | 5.3:-68570249 | MS.gene29763:CDS |
| TTGATTGGTTGAAAAGAATT+GGG | 0.361761 | 5.3:-68570883 | MS.gene29763:CDS |
| AAATGGAAGAAGATGGGTTT+TGG | 0.369970 | 5.3:+68571500 | None:intergenic |
| TGGAGAAAGAGCGGGAATTT+GGG | 0.370683 | 5.3:+68571441 | None:intergenic |
| CAAAGAAAATAACAACCTTT+AGG | 0.370775 | 5.3:+68571145 | None:intergenic |
| TATCTCACAAGACATTCTAT+TGG | 0.371889 | 5.3:+68570086 | None:intergenic |
| GAAGCAGTAAAATTGTTTCC+AGG | 0.374900 | 5.3:-68570269 | MS.gene29763:CDS |
| CTGCCTCGTAGAAGCTGGTT+TGG | 0.378167 | 5.3:-68570216 | MS.gene29763:CDS |
| GGTGCAAGAAATTGGGGTTT+TGG | 0.381606 | 5.3:+68571521 | None:intergenic |
| TTTATACGTTGCCAGATTGT+TGG | 0.388911 | 5.3:+68569897 | None:intergenic |
| TGGGTATGGAAATGGAGTTT+TGG | 0.409236 | 5.3:-68571023 | MS.gene29763:CDS |
| CGAATAGAGCACGTTGTGCT+TGG | 0.417453 | 5.3:+68571389 | None:intergenic |
| ATCCTGAAGGTCCAACAATC+TGG | 0.424676 | 5.3:-68569908 | MS.gene29763:CDS |
| ATCTCACAAGACATTCTATT+GGG | 0.431195 | 5.3:+68570087 | None:intergenic |
| AGGTTATAGAGCGGTTTGTA+AGG | 0.431374 | 5.3:-68570480 | MS.gene29763:CDS |
| TTGTAAGAAATGGAAGAAGA+TGG | 0.432773 | 5.3:+68571493 | None:intergenic |
| CGGCTTTCTTGCTGAAACTA+GGG | 0.439594 | 5.3:-68570319 | MS.gene29763:CDS |
| GCTTATTAAATTGGAGAAAA+CGG | 0.440222 | 5.3:-68570339 | MS.gene29763:CDS |
| GGCGGATCCAAAATTGTTGT+TGG | 0.440861 | 5.3:-68570732 | MS.gene29763:CDS |
| TTTAGGTCGGTTTATTAAGT+CGG | 0.441907 | 5.3:-68570681 | MS.gene29763:CDS |
| TGATCAGTTACAGGAGAGAT+TGG | 0.453405 | 5.3:-68570240 | MS.gene29763:CDS |
| TTCATGTATTGTGTTATCAT+GGG | 0.455291 | 5.3:-68571096 | MS.gene29763:CDS |
| GTGCTTACTCGACAACATAT+CGG | 0.461161 | 5.3:+68570616 | None:intergenic |
| TGTAAGAAATGGAAGAAGAT+GGG | 0.462766 | 5.3:+68571494 | None:intergenic |
| TTTAGGGAAGAAGCTGTACT+TGG | 0.469097 | 5.3:-68570705 | MS.gene29763:CDS |
| TTAGGTCGGTTTATTAAGTC+GGG | 0.470168 | 5.3:-68570680 | MS.gene29763:CDS |
| ACGGCTTTCTTGCTGAAACT+AGG | 0.474798 | 5.3:-68570320 | MS.gene29763:CDS |
| ATCTTCGCCATTCGATTCCT+CGG | 0.482527 | 5.3:+68571070 | None:intergenic |
| CTAGTTCAAACACTTATAGC+TGG | 0.491506 | 5.3:-68570829 | MS.gene29763:CDS |
| GATCCAAAATTGTTGTTGGA+AGG | 0.492557 | 5.3:-68570728 | MS.gene29763:CDS |
| TTCAATGTATGAGTGGTTGA+AGG | 0.494343 | 5.3:-68570018 | MS.gene29763:CDS |
| TTAGGGTTGAAGAGAAAGAA+TGG | 0.499067 | 5.3:+68571574 | None:intergenic |
| TTGGACTGCCTCGTAGAAGC+TGG | 0.500999 | 5.3:-68570221 | MS.gene29763:CDS |
| CTTCTAAACAGAAACATAAG+AGG | 0.503889 | 5.3:-68570388 | MS.gene29763:CDS |
| TGTATGAGTGGTTGAAGGAA+AGG | 0.504426 | 5.3:-68570013 | MS.gene29763:CDS |
| TATGGAAAACTCTGAGGAGA+TGG | 0.511741 | 5.3:-68570294 | MS.gene29763:CDS |
| GTAAAATTGTTTCCAGGGAG+AGG | 0.518160 | 5.3:-68570263 | MS.gene29763:CDS |
| GTAAATTGGTGGAGAAAGAG+CGG | 0.528173 | 5.3:+68571432 | None:intergenic |
| TCATGTATTGTGTTATCATG+GGG | 0.535058 | 5.3:-68571095 | MS.gene29763:CDS |
| TAGGGTTGAAGAGAAAGAAT+GGG | 0.541091 | 5.3:+68571575 | None:intergenic |
| AAGCAGTAAAATTGTTTCCA+GGG | 0.543083 | 5.3:-68570268 | MS.gene29763:CDS |
| ACATATGTATGATTTGTTCA+AGG | 0.544052 | 5.3:-68570753 | MS.gene29763:CDS |
| ATGAGGAAATTGATGAAATG+TGG | 0.545861 | 5.3:+68571304 | None:intergenic |
| GCCAAACTAATAAGCTCCAA+TGG | 0.546201 | 5.3:+68570410 | None:intergenic |
| AATCATAAACGATGATCCAT+TGG | 0.546725 | 5.3:-68570426 | MS.gene29763:CDS |
| ATATGAAACTATGGTACTCA+AGG | 0.555816 | 5.3:+68569968 | None:intergenic |
| TTGTAGCACTGCGATTAGAA+TGG | 0.562098 | 5.3:-68570192 | MS.gene29763:CDS |
| TGTAACTGATCACCTCTCCC+TGG | 0.577413 | 5.3:+68570251 | None:intergenic |
| TAAATTGGTGGAGAAAGAGC+GGG | 0.577774 | 5.3:+68571433 | None:intergenic |
| CAGAAACATAAGAGGAGTGG+AGG | 0.579021 | 5.3:-68570380 | MS.gene29763:CDS |
| TGTGTTATCATGGGGTTCCG+AGG | 0.589302 | 5.3:-68571087 | MS.gene29763:CDS |
| GAAAGTGAAAGAGTCCCCAT+TGG | 0.604883 | 5.3:+68571613 | None:intergenic |
| AAACAGAAACATAAGAGGAG+TGG | 0.607869 | 5.3:-68570383 | MS.gene29763:CDS |
| GCGCGTTTGATGTAAATTGG+TGG | 0.610008 | 5.3:+68571421 | None:intergenic |
| TTCGATAAAAGGTTATAGAG+CGG | 0.623688 | 5.3:-68570489 | MS.gene29763:CDS |
| TGGGGTTCCGAGGAATCGAA+TGG | 0.633090 | 5.3:-68571077 | MS.gene29763:CDS |
| AGAAACATAAGAGGAGTGGA+GGG | 0.636056 | 5.3:-68570379 | MS.gene29763:CDS |
| ACATCACCAACCAAAAGCAA+AGG | 0.637648 | 5.3:+68570929 | None:intergenic |
| CAAGAGTTTCAATGTATGAG+TGG | 0.645039 | 5.3:-68570025 | MS.gene29763:CDS |
| AAAATCAACATCCCTGACGA+TGG | 0.646277 | 5.3:-68571277 | MS.gene29763:CDS |
| TTTGTGAATATGCATCCTGA+AGG | 0.654931 | 5.3:-68569921 | MS.gene29763:CDS |
| TATGTATGATTTGTTCAAGG+CGG | 0.680802 | 5.3:-68570750 | MS.gene29763:CDS |
| AGGGTATATGGAAAACTCTG+AGG | 0.686033 | 5.3:-68570300 | MS.gene29763:CDS |
| TATGTTGTCGAGTAAGCACG+TGG | 0.687999 | 5.3:-68570612 | MS.gene29763:CDS |
| GAGTTTAGGAATTAATCACA+CGG | 0.713083 | 5.3:-68571185 | MS.gene29763:CDS |
| AATCCAAACCAGCTTCTACG+AGG | 0.736492 | 5.3:+68570213 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCAAAATTATGAAGATT+TGG | - | chr5.3:68570486-68570505 | MS.gene29763:CDS | 15.0% |
| !! | TTTCAAAATTATGAAGATTT+GGG | - | chr5.3:68570487-68570506 | MS.gene29763:CDS | 15.0% |
| !!! | TTTTTTGTATAATATTCGAA+TGG | - | chr5.3:68570912-68570931 | MS.gene29763:CDS | 15.0% |
| !! | GATTTCTTAAAAAACACTTT+AGG | - | chr5.3:68571366-68571385 | MS.gene29763:CDS | 20.0% |
| !! | TAGTTTCATATGATGAAAAA+CGG | - | chr5.3:68571523-68571542 | MS.gene29763:CDS | 20.0% |
| !!! | GATTGAATTTTTGTAAGAAA+TGG | + | chr5.3:68569999-68570018 | None:intergenic | 20.0% |
| !!! | TTTTTCATCATATGAAACTA+TGG | + | chr5.3:68571523-68571542 | None:intergenic | 20.0% |
| ! | AAAAGGTTCAAATTCGTTAA+TGG | + | chr5.3:68570269-68570288 | None:intergenic | 25.0% |
| ! | AAAGGTTCAAATTCGTTAAT+GGG | + | chr5.3:68570268-68570287 | None:intergenic | 25.0% |
| ! | CAAAGAAAATAACAACCTTT+AGG | + | chr5.3:68570337-68570356 | None:intergenic | 25.0% |
| ! | GCTTATTAAATTGGAGAAAA+CGG | - | chr5.3:68571140-68571159 | MS.gene29763:CDS | 25.0% |
| ! | TTCATGTATTGTGTTATCAT+GGG | - | chr5.3:68570383-68570402 | MS.gene29763:CDS | 25.0% |
| ! | TTGGAAAAATTTCTACCTAA+AGG | - | chr5.3:68570319-68570338 | MS.gene29763:CDS | 25.0% |
| ! | TTTCATGTATTGTGTTATCA+TGG | - | chr5.3:68570382-68570401 | MS.gene29763:CDS | 25.0% |
| ! | TTTGAATTACATTTCTCTTC+AGG | + | chr5.3:68571338-68571357 | None:intergenic | 25.0% |
| !! | ATTCCTAAACTCTCTAAAAA+AGG | + | chr5.3:68570286-68570305 | None:intergenic | 25.0% |
| !! | GTTTTCTCCAATTTAATAAG+CGG | + | chr5.3:68571141-68571160 | None:intergenic | 25.0% |
| !! | TTGATTGGTTGAAAAGAATT+GGG | - | chr5.3:68570596-68570615 | MS.gene29763:CDS | 25.0% |
| !! | TTTTCTCCAATTTAATAAGC+GGG | + | chr5.3:68571140-68571159 | None:intergenic | 25.0% |
| !!! | ACATATGTATGATTTGTTCA+AGG | - | chr5.3:68570726-68570745 | MS.gene29763:CDS | 25.0% |
| !!! | TTAGAGTTTTTTCATCAAGT+GGG | - | chr5.3:68570691-68570710 | MS.gene29763:CDS | 25.0% |
| !!! | TTTAGAGTTTTTTCATCAAG+TGG | - | chr5.3:68570690-68570709 | MS.gene29763:CDS | 25.0% |
| AAGCAGTAAAATTGTTTCCA+GGG | - | chr5.3:68571211-68571230 | MS.gene29763:CDS | 30.0% | |
| AATCATAAACGATGATCCAT+TGG | - | chr5.3:68571053-68571072 | MS.gene29763:CDS | 30.0% | |
| ATATGAAACTATGGTACTCA+AGG | + | chr5.3:68571514-68571533 | None:intergenic | 30.0% | |
| ATCTCACAAGACATTCTATT+GGG | + | chr5.3:68571395-68571414 | None:intergenic | 30.0% | |
| ATGAGGAAATTGATGAAATG+TGG | + | chr5.3:68570178-68570197 | None:intergenic | 30.0% | |
| CTTCTAAACAGAAACATAAG+AGG | - | chr5.3:68571091-68571110 | MS.gene29763:CDS | 30.0% | |
| GAGTTTAGGAATTAATCACA+CGG | - | chr5.3:68570294-68570313 | MS.gene29763:CDS | 30.0% | |
| TATCTCACAAGACATTCTAT+TGG | + | chr5.3:68571396-68571415 | None:intergenic | 30.0% | |
| TCATGTATTGTGTTATCATG+GGG | - | chr5.3:68570384-68570403 | MS.gene29763:CDS | 30.0% | |
| TGTAAGAAATGGAAGAAGAT+GGG | + | chr5.3:68569988-68570007 | None:intergenic | 30.0% | |
| TTCGATAAAAGGTTATAGAG+CGG | - | chr5.3:68570990-68571009 | MS.gene29763:CDS | 30.0% | |
| TTGAGCAAACATTCGATAAA+AGG | - | chr5.3:68570979-68570998 | MS.gene29763:CDS | 30.0% | |
| TTGTAAGAAATGGAAGAAGA+TGG | + | chr5.3:68569989-68570008 | None:intergenic | 30.0% | |
| ! | AAACCTTCCAACAACAATTT+TGG | + | chr5.3:68570757-68570776 | None:intergenic | 30.0% |
| ! | AAATTGTTGTTGGAAGGTTT+AGG | - | chr5.3:68570757-68570776 | MS.gene29763:CDS | 30.0% |
| ! | AATTGTTGTTGGAAGGTTTA+GGG | - | chr5.3:68570758-68570777 | MS.gene29763:CDS | 30.0% |
| ! | ACAGAAGCAAGAGAAATTTT+TGG | - | chr5.3:68570436-68570455 | MS.gene29763:CDS | 30.0% |
| ! | ATTCTGCATAAATCAGCTTT+TGG | + | chr5.3:68571036-68571055 | None:intergenic | 30.0% |
| ! | CAGAAGCAAGAGAAATTTTT+GGG | - | chr5.3:68570437-68570456 | MS.gene29763:CDS | 30.0% |
| ! | CTTGATTGGTTGAAAAGAAT+TGG | - | chr5.3:68570595-68570614 | MS.gene29763:CDS | 30.0% |
| ! | GTGAGAAAAATTAGGGTTTT+GGG | + | chr5.3:68569939-68569958 | None:intergenic | 30.0% |
| ! | TGAGAAAAATTAGGGTTTTG+GGG | + | chr5.3:68569938-68569957 | None:intergenic | 30.0% |
| ! | TTTAGGTCGGTTTATTAAGT+CGG | - | chr5.3:68570798-68570817 | MS.gene29763:CDS | 30.0% |
| !! | AGTTTGTTGTTGTTCTTGAT+TGG | - | chr5.3:68570581-68570600 | MS.gene29763:CDS | 30.0% |
| !! | ATACCCAACATACTTTTTAC+AGG | - | chr5.3:68571413-68571432 | MS.gene29763:CDS | 30.0% |
| !! | GGTTTTGGTGAGAAAAATTA+GGG | + | chr5.3:68569946-68569965 | None:intergenic | 30.0% |
| !! | TATGTATGATTTGTTCAAGG+CGG | - | chr5.3:68570729-68570748 | MS.gene29763:CDS | 30.0% |
| !!! | GAAATTTTTGGGTATGGAAA+TGG | - | chr5.3:68570448-68570467 | MS.gene29763:CDS | 30.0% |
| !!! | GAACCTTTTTTAGAGAGTTT+AGG | - | chr5.3:68570280-68570299 | MS.gene29763:CDS | 30.0% |
| AAACAGAAACATAAGAGGAG+TGG | - | chr5.3:68571096-68571115 | MS.gene29763:CDS | 35.0% | |
| AGGAATTAATCACACGGAAT+TGG | - | chr5.3:68570300-68570319 | MS.gene29763:CDS | 35.0% | |
| CAAGAGTTTCAATGTATGAG+TGG | - | chr5.3:68571454-68571473 | MS.gene29763:CDS | 35.0% | |
| CTAGTTCAAACACTTATAGC+TGG | - | chr5.3:68570650-68570669 | MS.gene29763:CDS | 35.0% | |
| CTCTTCAGGATTAGAATCTT+AGG | + | chr5.3:68571324-68571343 | None:intergenic | 35.0% | |
| GAAGCAGTAAAATTGTTTCC+AGG | - | chr5.3:68571210-68571229 | MS.gene29763:CDS | 35.0% | |
| GAATTGGGATTGAGAGTAAA+TGG | - | chr5.3:68570611-68570630 | MS.gene29763:CDS | 35.0% | |
| TAGGGTTGAAGAGAAAGAAT+GGG | + | chr5.3:68569907-68569926 | None:intergenic | 35.0% | |
| TCCATTGGAGCTTATTAGTT+TGG | - | chr5.3:68571068-68571087 | MS.gene29763:CDS | 35.0% | |
| TTAGGGTTGAAGAGAAAGAA+TGG | + | chr5.3:68569908-68569927 | None:intergenic | 35.0% | |
| TTCAATGTATGAGTGGTTGA+AGG | - | chr5.3:68571461-68571480 | MS.gene29763:CDS | 35.0% | |
| TTGTGACCCGCTTATTAAAT+TGG | - | chr5.3:68571131-68571150 | MS.gene29763:CDS | 35.0% | |
| TTTAATAAGCGGGTCACAAT+AGG | + | chr5.3:68571130-68571149 | None:intergenic | 35.0% | |
| TTTATACGTTGCCAGATTGT+TGG | + | chr5.3:68571585-68571604 | None:intergenic | 35.0% | |
| TTTGTGAATATGCATCCTGA+AGG | - | chr5.3:68571558-68571577 | MS.gene29763:CDS | 35.0% | |
| ! | ACGTCCTGTAAAAAGTATGT+TGG | + | chr5.3:68571420-68571439 | None:intergenic | 35.0% |
| ! | CGTCCTGTAAAAAGTATGTT+GGG | + | chr5.3:68571419-68571438 | None:intergenic | 35.0% |
| ! | GATCCAAAATTGTTGTTGGA+AGG | - | chr5.3:68570751-68570770 | MS.gene29763:CDS | 35.0% |
| ! | GATGAAATGTGGAGAGTTTT+TGG | + | chr5.3:68570167-68570186 | None:intergenic | 35.0% |
| ! | GGGTAGATTTTGAACAATTC+AGG | + | chr5.3:68570021-68570040 | None:intergenic | 35.0% |
| ! | GGTGAGAAAAATTAGGGTTT+TGG | + | chr5.3:68569940-68569959 | None:intergenic | 35.0% |
| ! | TTAGGTCGGTTTATTAAGTC+GGG | - | chr5.3:68570799-68570818 | MS.gene29763:CDS | 35.0% |
| !! | AAATGGAAGAAGATGGGTTT+TGG | + | chr5.3:68569982-68570001 | None:intergenic | 35.0% |
| !! | AACATACTTTTTACAGGACG+TGG | - | chr5.3:68571419-68571438 | MS.gene29763:CDS | 35.0% |
| !! | AAGAAGCTGTACTTGGTTTT+AGG | - | chr5.3:68570781-68570800 | MS.gene29763:CDS | 35.0% |
| !! | GGGTTTTGGTGAGAAAAATT+AGG | + | chr5.3:68569947-68569966 | None:intergenic | 35.0% |
| !!! | GCAAGAGAAATTTTTGGGTA+TGG | - | chr5.3:68570442-68570461 | MS.gene29763:CDS | 35.0% |
| !!! | TGTAGTTTTGTGTGTAGTGA+AGG | + | chr5.3:68570120-68570139 | None:intergenic | 35.0% |
| !!! | TGTTTGTTGTCCTTTGCTTT+TGG | - | chr5.3:68570540-68570559 | MS.gene29763:CDS | 35.0% |
| AAAATCAACATCCCTGACGA+TGG | - | chr5.3:68570202-68570221 | MS.gene29763:CDS | 40.0% | |
| ACATCACCAACCAAAAGCAA+AGG | + | chr5.3:68570553-68570572 | None:intergenic | 40.0% | |
| AGAAACATAAGAGGAGTGGA+GGG | - | chr5.3:68571100-68571119 | MS.gene29763:CDS | 40.0% | |
| AGGGTATATGGAAAACTCTG+AGG | - | chr5.3:68571179-68571198 | MS.gene29763:CDS | 40.0% | |
| AGGTTATAGAGCGGTTTGTA+AGG | - | chr5.3:68570999-68571018 | MS.gene29763:CDS | 40.0% | |
| CTTGCTGAAACTAGGGTATA+TGG | - | chr5.3:68571167-68571186 | MS.gene29763:CDS | 40.0% | |
| GCCAAACTAATAAGCTCCAA+TGG | + | chr5.3:68571072-68571091 | None:intergenic | 40.0% | |
| GTAAAATTGTTTCCAGGGAG+AGG | - | chr5.3:68571216-68571235 | MS.gene29763:CDS | 40.0% | |
| GTAAATTGGTGGAGAAAGAG+CGG | + | chr5.3:68570050-68570069 | None:intergenic | 40.0% | |
| GTGCTTACTCGACAACATAT+CGG | + | chr5.3:68570866-68570885 | None:intergenic | 40.0% | |
| TAAATTGGTGGAGAAAGAGC+GGG | + | chr5.3:68570049-68570068 | None:intergenic | 40.0% | |
| TGATCAGTTACAGGAGAGAT+TGG | - | chr5.3:68571239-68571258 | MS.gene29763:CDS | 40.0% | |
| TGTATGAGTGGTTGAAGGAA+AGG | - | chr5.3:68571466-68571485 | MS.gene29763:CDS | 40.0% | |
| TTGTAGCACTGCGATTAGAA+TGG | - | chr5.3:68571287-68571306 | MS.gene29763:CDS | 40.0% | |
| TTTAGGGAAGAAGCTGTACT+TGG | - | chr5.3:68570774-68570793 | MS.gene29763:CDS | 40.0% | |
| ! | ACGTTGTGCTTGGATTTTTG+TGG | + | chr5.3:68570083-68570102 | None:intergenic | 40.0% |
| ! | TATGGAAAACTCTGAGGAGA+TGG | - | chr5.3:68571185-68571204 | MS.gene29763:CDS | 40.0% |
| ! | TGGGTATGGAAATGGAGTTT+TGG | - | chr5.3:68570456-68570475 | MS.gene29763:CDS | 40.0% |
| !! | GGGTTTTGGTGCAAGAAATT+GGG | + | chr5.3:68569968-68569987 | None:intergenic | 40.0% |
| !! | GGTTTTGGTGCAAGAAATTG+GGG | + | chr5.3:68569967-68569986 | None:intergenic | 40.0% |
| !! | TGGGTTTTGGTGCAAGAAAT+TGG | + | chr5.3:68569969-68569988 | None:intergenic | 40.0% |
| !! | TGTTGTCCTTTGCTTTTGGT+TGG | - | chr5.3:68570544-68570563 | MS.gene29763:CDS | 40.0% |
| !!! | AAAATTAGGGTTTTGGGGTG+TGG | + | chr5.3:68569933-68569952 | None:intergenic | 40.0% |
| !!! | AGCTGTACTTGGTTTTAGGT+CGG | - | chr5.3:68570785-68570804 | MS.gene29763:CDS | 40.0% |
| !!! | ATCGTCAGGGATGTTGATTT+TGG | + | chr5.3:68570203-68570222 | None:intergenic | 40.0% |
| !!! | GGATGTTGATTTTGGAGATG+AGG | + | chr5.3:68570195-68570214 | None:intergenic | 40.0% |
| AATCCAAACCAGCTTCTACG+AGG | + | chr5.3:68571269-68571288 | None:intergenic | 45.0% | |
| ACGGCTTTCTTGCTGAAACT+AGG | - | chr5.3:68571159-68571178 | MS.gene29763:CDS | 45.0% | |
| AGAGCGGTTTGTAAGGAGTT+AGG | - | chr5.3:68571006-68571025 | MS.gene29763:CDS | 45.0% | |
| ATCCTGAAGGTCCAACAATC+TGG | - | chr5.3:68571571-68571590 | MS.gene29763:CDS | 45.0% | |
| ATCTTCGCCATTCGATTCCT+CGG | + | chr5.3:68570412-68570431 | None:intergenic | 45.0% | |
| CAGAAACATAAGAGGAGTGG+AGG | - | chr5.3:68571099-68571118 | MS.gene29763:CDS | 45.0% | |
| CGGCTTTCTTGCTGAAACTA+GGG | - | chr5.3:68571160-68571179 | MS.gene29763:CDS | 45.0% | |
| GCGCGTTTGATGTAAATTGG+TGG | + | chr5.3:68570061-68570080 | None:intergenic | 45.0% | |
| GGCGGATCCAAAATTGTTGT+TGG | - | chr5.3:68570747-68570766 | MS.gene29763:CDS | 45.0% | |
| GTGGCGCGTTTGATGTAAAT+TGG | + | chr5.3:68570064-68570083 | None:intergenic | 45.0% | |
| TATGTTGTCGAGTAAGCACG+TGG | - | chr5.3:68570867-68570886 | MS.gene29763:CDS | 45.0% | |
| TGGAGAAAGAGCGGGAATTT+GGG | + | chr5.3:68570041-68570060 | None:intergenic | 45.0% | |
| ! | GGTGCAAGAAATTGGGGTTT+TGG | + | chr5.3:68569961-68569980 | None:intergenic | 45.0% |
| !!! | GGTTTTGGGGTGTGGAATTA+GGG | + | chr5.3:68569925-68569944 | None:intergenic | 45.0% |
| AGGGAGAGGTGATCAGTTAC+AGG | - | chr5.3:68571230-68571249 | MS.gene29763:CDS | 50.0% | |
| CGAATAGAGCACGTTGTGCT+TGG | + | chr5.3:68570093-68570112 | None:intergenic | 50.0% | |
| GAAAAACGTCGCCATCGTCA+GGG | + | chr5.3:68570216-68570235 | None:intergenic | 50.0% | |
| GTGGAGAAAGAGCGGGAATT+TGG | + | chr5.3:68570042-68570061 | None:intergenic | 50.0% | |
| TGCCAGATTGTTGGACCTTC+AGG | + | chr5.3:68571576-68571595 | None:intergenic | 50.0% | |
| TGTAACTGATCACCTCTCCC+TGG | + | chr5.3:68571231-68571250 | None:intergenic | 50.0% | |
| TGTGTTATCATGGGGTTCCG+AGG | - | chr5.3:68570392-68570411 | MS.gene29763:CDS | 50.0% | |
| ! | ACGTTTTTCGTGCTCTCAGC+AGG | - | chr5.3:68570227-68570246 | MS.gene29763:CDS | 50.0% |
| !!! | GGGTTTTGGGGTGTGGAATT+AGG | + | chr5.3:68569926-68569945 | None:intergenic | 50.0% |
| CGAAAAACGTCGCCATCGTC+AGG | + | chr5.3:68570217-68570236 | None:intergenic | 55.0% | |
| CTGCCTCGTAGAAGCTGGTT+TGG | - | chr5.3:68571263-68571282 | MS.gene29763:CDS | 55.0% | |
| TGGGGTTCCGAGGAATCGAA+TGG | - | chr5.3:68570402-68570421 | MS.gene29763:CDS | 55.0% | |
| TTGGACTGCCTCGTAGAAGC+TGG | - | chr5.3:68571258-68571277 | MS.gene29763:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 68569869 | 68571632 | 68569869 | ID=MS.gene29763 |
| chr5.3 | mRNA | 68569869 | 68571632 | 68569869 | ID=MS.gene29763.t1;Parent=MS.gene29763 |
| chr5.3 | exon | 68569869 | 68571632 | 68569869 | ID=MS.gene29763.t1.exon1;Parent=MS.gene29763.t1 |
| chr5.3 | CDS | 68569869 | 68571632 | 68569869 | ID=cds.MS.gene29763.t1;Parent=MS.gene29763.t1 |
| Gene Sequence |
| Protein sequence |
