AlfalfaGEDB | MS.gene05659

M. sativa cultivar XinJiangDaYe / MS.gene05659

KEGG: K01148
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF04857.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05659.t1	XP_024635442.1	96.4	521	17	2	3	522	50	569	1.50E-282	981.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05659.t1	Q9LG26	55.6	491	209	2	3	493	167	648	2.0e-150	533.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05659.t1	A0A396ISR3	96.4	521	17	2	3	522	168	687	1.1e-282	981.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene05659	0.829116	6.16E-55	-1.69E-46
MS.gene051332	MS.gene05659	0.803217	3.87E-49	-1.69E-46
MS.gene051744	MS.gene05659	0.802494	5.46E-49	-1.69E-46
MS.gene052108	MS.gene05659	0.803083	4.13E-49	-1.69E-46
MS.gene052333	MS.gene05659	0.804228	2.39E-49	-1.69E-46
MS.gene052582	MS.gene05659	0.812137	4.93E-51	-1.69E-46
MS.gene052584	MS.gene05659	0.825237	5.23E-54	-1.69E-46
MS.gene053226	MS.gene05659	0.833643	4.74E-56	-1.69E-46
MS.gene054479	MS.gene05659	0.813127	3.00E-51	-1.69E-46
MS.gene054576	MS.gene05659	0.81551	8.91E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene043239	MS.gene05659	PPI
MS.gene05659	MS.gene058147	PPI
MS.gene05659	MS.gene024734	PPI
MS.gene05659	MS.gene21710	PPI
MS.gene05659	MS.gene021698	PPI
MS.gene21912	MS.gene05659	PPI
MS.gene79599	MS.gene05659	PPI
MS.gene91519	MS.gene05659	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05659.t1	MTR_3g460830	97.925	241	5	0	282	522	5	245	1.23e-177	499

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05659.t1	AT1G55870	55.601	491	209	2	3	493	167	648	0.0	540
MS.gene05659.t1	AT1G55870	56.034	464	197	1	30	493	8	464	0.0	523
MS.gene05659.t1	AT1G55870	61.159	345	127	1	149	493	1	338	3.60e-148	430
MS.gene05659.t1	AT1G55870	61.159	345	127	1	149	493	1	338	3.60e-148	430
MS.gene05659.t1	AT3G25430	25.051	487	279	19	3	470	153	572	2.38e-24	107
MS.gene05659.t1	AT3G25430	24.846	487	263	20	3	470	153	555	1.21e-21	99.0

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Find 83 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGAAAGGGAAGCAATA+AGG	0.360923	3.2:-51372318	MS.gene05659:CDS
AACCAAATTGATTGAATACA+AGG	0.519448	3.2:-51367436	MS.gene05659:CDS
AAGTTCAGTGAATGGCGTGA+TGG	0.547765	3.2:-51372181	MS.gene05659:CDS
AAGTTGAAGTTGATGATTCA+AGG	0.401865	3.2:-51370944	MS.gene05659:intron
AATAGTTGTGTATACAGACT+CGG	0.645056	3.2:-51371761	MS.gene05659:CDS
AATCAACTTAAGCTGACGTG+AGG	0.725978	3.2:+51372042	None:intergenic
AATCCATCAAGCTTGAGAGC+TGG	0.565036	3.2:+51372067	None:intergenic
AATCGGTCAGACCAAATTCA+AGG	0.539111	3.2:-51372142	MS.gene05659:CDS
AATGTGAACAATGAGGTTTC+TGG	0.349688	3.2:-51371793	MS.gene05659:CDS
ACAAAACATAGAAAATGCAG+AGG	0.706266	3.2:+51371028	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACACTATAACTAAGCT+AGG	-	chr3.2:51370658-51370677	MS.gene05659:intron	30.0%
AATAGTTGTGTATACAGACT+CGG	-	chr3.2:51367947-51367966	MS.gene05659:CDS	30.0%
ACAAAACATAGAAAATGCAG+AGG	+	chr3.2:51368683-51368702	None:intergenic	30.0%
ACACAATTAGAAAATGAGAG+GGG	-	chr3.2:51370058-51370077	MS.gene05659:intron	30.0%
AGGTAAAAAAGGAGAATCAA+AGG	-	chr3.2:51368310-51368329	MS.gene05659:intron	30.0%
ATAGTATTGTGCATGTACTA+AGG	-	chr3.2:51367809-51367828	MS.gene05659:CDS	30.0%
ATATAACCTTTGCATTACTG+GGG	+	chr3.2:51368935-51368954	None:intergenic	30.0%
ATCATCAACTACGAAGATAA+GGG	-	chr3.2:51370343-51370362	MS.gene05659:intron	30.0%
ATCTTTCTATCTATCCAGTT+AGG	-	chr3.2:51370374-51370393	MS.gene05659:intron	30.0%
ATGAAAGGAGATCAATAACA+TGG	+	chr3.2:51368374-51368393	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	51367362	51372368	51367362	ID=MS.gene05659
chr3.2	mRNA	51367362	51372368	51367362	ID=MS.gene05659.t1;Parent=MS.gene05659
chr3.2	exon	51372036	51372368	51372036	ID=MS.gene05659.t1.exon1;Parent=MS.gene05659.t1
chr3.2	CDS	51372036	51372368	51372036	ID=cds.MS.gene05659.t1;Parent=MS.gene05659.t1
chr3.2	exon	51371738	51371851	51371738	ID=MS.gene05659.t1.exon2;Parent=MS.gene05659.t1
chr3.2	CDS	51371738	51371851	51371738	ID=cds.MS.gene05659.t1;Parent=MS.gene05659.t1
chr3.2	exon	51371298	51371424	51371298	ID=MS.gene05659.t1.exon3;Parent=MS.gene05659.t1
chr3.2	CDS	51371298	51371424	51371298	ID=cds.MS.gene05659.t1;Parent=MS.gene05659.t1
chr3.2	exon	51370945	51371215	51370945	ID=MS.gene05659.t1.exon4;Parent=MS.gene05659.t1
chr3.2	CDS	51370945	51371215	51370945	ID=cds.MS.gene05659.t1;Parent=MS.gene05659.t1
chr3.2	exon	51367362	51368085	51367362	ID=MS.gene05659.t1.exon5;Parent=MS.gene05659.t1
chr3.2	CDS	51367362	51368085	51367362	ID=cds.MS.gene05659.t1;Parent=MS.gene05659.t1

Gene Sequence

>MS.gene05659

ATGTCAGGGATATCTTATTTATCCAGAGAACAAGAAAGGGAAGCAATAAGGAGTTTGAATTCAACCCATGATAGTGAGTGTTCAGACATTTCTAAATTAAATGATGTTAGGGACATACCTTCTGTCAACATGGCAGACATTTTATTCACTGCACGAATGAAAGATAAGTTCAGTGAATGGCGTGATGGGTTATTACAGGAGCAAAATCGGTCAGACCAAATTCAAGGATCTCGAAAAGACTCAAAACAACAATTTCAATTGATTTTCTTTAAGACACATCCAGCTCTCAAGCTTGATGGATTCACCTCACGTCAGCTTAAGTTGATTCAGTTGGTAATGTTGTTTTAACTTGTCTCTATCTACTGTTCATATGTTCACGATTTGTCTTTTCTCTCATATTGGTATTTTGAATTCATCATCTATTCACTTCTTTTGGTTAAAAATATTATAGTATTGTGCATGTACTAAGGTTTTACACTGGCTATAAATTTTGCTGATTATAAGTTTGAAATTTCAGGTCATCAAAAAGCACTTCAAAGATCTTTCTTATATCAATGTGAACAATGAGGTTTCTGGTTCCCAACAAATAGTTGTGTATACAGACTCGGAGAATGAACTAAACTTACTTCTGGTAATTAACTCTTAAATATTATGTTTTTTTTCCTTTATAATTTTTGATATGTGGCTCTACATTGGCATTGATTTTTGGTTTAGAATCTTGAGATGGCTAAGGACATTCTACAAATCATGCATAACTCTAGTTTTAGTTATAAATGGCCACAAATAATATTAAAAGATGATGCCTTTATACTCTATTAGCATAGGCATCCCATGTGTAGTATAGGTTGAACAGACGAGAAAGTTAAAATTAAGTCGTGAACCGAGTTTATTGATGTTACAGCACCGTATTGGGTTCCTAATAAATGTTCTTTAATCTCTTGTAGAAGGAGGTAAAAAAGGAGAATCAAAGGGCAAAAGAGATGAAGATCCAAGCTGCAGTTGGATTTCGCCATGTTATTGATCTCCTTTCATCAGAACAGAAGTTGATAGTTGGTCATAACTGTTTTTTAGGTATCAATGACATTCTTAATCCTTAACAGGCTATATTATTTTGTAAGACAGTAAGATAATATTATATCATTCCATGATACAGATATTGCTCATGTCTACAGCAAATTTATCGGTCCTCTTCCCGAGACTCCAGAAAAGTTTGTTGCCTCTGTTAACAAGTGCTTTCCACACATTGTTGACACGAAAATACTCATGAACACTAATTCTATGCTCCAAGAAAGAATGAAAAAGTCCAGAAAATCACTTGCCTCTGCATTTTCTATGTTTTGTCCACAAATTGCTGCTGGCTCCAAAAGCACCGAGCTAGTTACACCATCCCAAGTGAAAGTAAAAGTTGAAGTTGATGATTCAAGGTTTGTCTATGTATAATTTTGAAGTTTGTGACATAAGAGTTATGTTTCAACTAGTAGTTTTTGATTTTTCAACTATTTTCATACATGTTACAATTGTTTCCTTCATTTTTACAACTCTTTCATTGTTTTTCTTTCTTGATATCTTACCCCAGTAATGCAAAGGTTATATGGATACATTATTCACTTTCACTACTCTTATTTCTTTATTTTAGCTTAATTGCACTTTTGGCCCCTCTAGTTTCTCAAATCAATTGTGTGATTTTGACCCCCGTAGTTTCAAATGAGCAATTTTGGCCCCTATAGTTTATCCCTTTTTTGATTTCATAGCCCCCATTCAGATATTGATTTAATTTTGACTAAATTAGCTGAGGTGTCATATTAATGACCCATGTTTCGTTTCTATTGGCCAAAGTGGATATTTGAAACAATATTATTATATAAAAGTAATAATAATCATACACGTCACGTGACTTGTTTTTACAAAAACAATAAAAAAACATAAAATTAAATTGAAAATACATATAATTGGGAAAAACATTTCACCCTAATTCTGAAAATGTGAAGAATACGAATTAGAGGAGAAACACGGAGACGACAAATCAGAGGAGAAACATGGAGATGAAGACCAAGTCGACGAAGACAAAGGTATTAACGGCGATGACAAAGGTATTAACGGCGATGGAAGGTGAGTTGAGGTCGACAGGGCATGGAGAATACGACAGTTGATGGAGGAAGGCGATAGGGAGGGAAAGTCACAGGGATTCCTGACAATTCATTGTTTTTCAATTCACCCTCATCTTCAATTTGTCTTCAATTCTTTCCTCCATCGTTCATCGACATTCTTAAAGCTTCTGTTGTCATCAATACCCAACAGTACACGTTGTTGTTAACACCTGTCGCAGTGAACATCTTTGCCGGCTTTGTATGTGCCGTCGTCGTATTCGTTTTCCTCCCTTACCATCTTCGTTTGCATTTTCGCCTCAAATGCGATAGTTTACGTATTCGTCTTCCTATTTTTCGCATTCCTTGTACAGTTTTTCTTTTTACTGATTTGGTTGTTTTATAAAAAAAACAAGTCAGTGTTTAATTATTATTACTTCTTTTTATAATATTTTTTTTCAAATTTTCACTTTGGCCAATAGAAACGATACATGTGTCATTAATACGACACATCAGCTAATTTAGTCAAAATCTGAATTGGGGGTATGGAATTAGAAAGGGGATAAACTAGAGGGGCCAAAATGCTCATTTGTAACTAAGGGAGATAAAATCACACAATTAGAAAATGAGAGGGGCCAAAAGTGCAATTAAGCCTCTGTTTTTTTAACAGTAAAAGCAAATTCTTTCATTAGAAAAAGTGAAAAGGATTACAACATGATGATTGTAGCAAATGTGTTTAGGTAGTATCCATCCACTTAAGAGAGAAACTCCAACACCAGAGCCTAACCAGTCATGACTCACGAGTAACAATACACAGAGTCACCAGGAGCCAATTTGGCACGACTAAACCAACATCTAAAACCCAACTGCCAGCTTTAACACATTCTTCCGTCCACGATCATCAACTACGAAGATAAGGGAAACTGCAATCTTTCTATCTATCCAGTTAGGGATCAAATTTTTGGCTACTGTAGACATGTTTTGACTTCAAGTGTGCTCAGGTGTAAAATTCAGAGAGGGTTCATAGAAGATTTCTAACTAACTTTTCTTATCAATTTCTGATTCTCATTGAATGAATAGGAAACAGTTACAAGCAGCTTTATATAGAAGCTGAAGGTTACCTGCTATAGCAGGTTAACCTGTTACAAAACTGACATGTGTCCGTCACTTGACAGCTATTCATAACTGTCAAGTGCCAGCTGTACATAGCTGAAACACACTATAACTAAGCTAGGCCAACTACATCTCTTATATCAGAAATGTCAAAATTGATCCCTTGATTTGAAGATAGTTGAAACTTGGGATGTTATCCAAAGTGGTCCTGTCCACACCATGTTATCCAAAATAGCCCATCTTCGATAGGACATTTCAACAAATGAGCAGTGTGCAATTTCCCCCCTAAAAACTGGAAGCCCATTCGACACAATGGTTGTCACAAATGATACCCGCATAAACAACAGATGCGACATAGAGTTTTGTACCTATGTCTGACGGCTTTTAAGAAGGCCGTTCGAGTCTGAGATTCAACGGTTGACGGGAAAACACGGCTTGCTTCAAAATGGAGGGGGATTGATGATCCATATGTCCCCGCCATGTGAACTTCTTAACTTGAGGGAGGGGGTAGGGGCTCCGGTTGGGGAGCTCTGTCAAGCTGGAGACCATAGCGGATGGGAGCGAGATTGCGAGGGGGATGATGTGCATATGCGGCGTTTGTGAAAGGATGGTTACCGAACACGGGTGAAGTAGACCGTGGAAGAGGGGTCATGGGAAGATGGGTTGATGGAGGAGTGAGGTACCATGGTGGTGAAATGGTAGCGTGAACACATCTTTGAAGATGCAGGGAACTGGAGAGGCACCAGCAGCCTCGCTCCCACTGATGGGGGAGAAAACCACCACAAGGGAGGGGGAAAATTTCCTGACAACAGTGGTTTTTTGAGAAACATTCCTACTCTTTTATGGCAAATAAAAAAACTGTACAATGGCGGATAACATTTTTATTCTTGCACACCATTTTTCTGTCTACGTAATTTGCATATAGCTTGAGGTGATTTCTTTAGAATTTAGACAGAAGATTTTAAATAATTAGTGTCTTGTATTAAAAAACTGTCCTCTTATATTAATTTTCCTTCCGTTTCCGTGTTATCTTAGCTGCCTCTTTATATTGTTCCTTTCATACCAACAAAAAATGTGTATTTGCAGATCGTCCAGCTGGAATCCTGGAGGCAAGCATGAGGCAGGATATGATGCTTTCATGACTGGATGTATCTTTGCCCAGTTATGCAGTGATTTAGGAGTTGATTTTAAACTCCATGAATCTTCAAAACAATTAGCTTTCAATGAGAAACTACAGAAATACATTAATCATCTATATCTTAGTTATATGCATGGGGATATTATAGATCTAAATACCGGTTATACAGTTGAAAATTCTTCACCAAGCTATAACCTCAATAGACGGTACCAACAAATTTTGTTTGAGAACATTGTTATTATCTGGGGATTTCCTTCTAACCTGAAGGCAAGTGAAGTACGAGAGTGTTTATCTAAAGTTTTCGGTTTAACTTCTGTAGTTTCTGTCTACCACTTGGATGCAACAGCAGTGTTCGTTCAGTTTAACAAGACTCAATTAGTTTCCGACTTTCTTTTGTTGAAGGAAAGCTTAGAGAGAAGTAATGGTCCAATCTCGGTTTTGCATCCGCTGGGAAAACTTTTGGAAGGTGGAAATACATGTGCTGCTAATTATGATGCTTATAAAGAAATTTGTGGTTCACCCTTATCAGAAACTCTGTTTGCTGATCAGGCAAAGGCAGTTGGCATGAAGTGGAAAACCAAATTGATTGAATACAAGGAATCATTGAGGAGTGACAAACATGAAAATCCAACTATAGAAGAGAATGTAAATGATGCAGCTATGAGTTTGTAG

Protein sequence

>MS.gene05659.t1

MSGISYLSREQEREAIRSLNSTHDSECSDISKLNDVRDIPSVNMADILFTARMKDKFSEWRDGLLQEQNRSDQIQGSRKDSKQQFQLIFFKTHPALKLDGFTSRQLKLIQLVIKKHFKDLSYINVNNEVSGSQQIVVYTDSENELNLLLKEVKKENQRAKEMKIQAAVGFRHVIDLLSSEQKLIVGHNCFLDIAHVYSKFIGPLPETPEKFVASVNKCFPHIVDTKILMNTNSMLQERMKKSRKSLASAFSMFCPQIAAGSKSTELVTPSQVKVKVEVDDSRSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLGVDFKLHESSKQLAFNEKLQKYINHLYLSYMHGDIIDLNTGYTVENSSPSYNLNRRYQQILFENIVIIWGFPSNLKASEVRECLSKVFGLTSVVSVYHLDATAVFVQFNKTQLVSDFLLLKESLERSNGPISVLHPLGKLLEGGNTCAANYDAYKEICGSPLSETLFADQAKAVGMKWKTKLIEYKESLRSDKHENPTIEENVNDAAMSL