AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29929

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29929.t1 MTR_8g464350 93.991 233 14 0 1 233 22 254 1.19e-169 467
MS.gene29929.t1 MTR_8g058990 84.549 233 36 0 1 233 21 253 1.06e-149 417
MS.gene29929.t1 MTR_7g013140 76.316 228 54 0 6 233 24 251 2.71e-131 370
MS.gene29929.t1 MTR_7g013120 74.892 231 57 1 4 233 23 253 2.45e-128 363
MS.gene29929.t1 MTR_7g013150 72.532 233 64 0 1 233 21 253 3.87e-127 360
MS.gene29929.t1 MTR_7g061720 60.455 220 85 1 10 227 32 251 2.68e-97 284
MS.gene29929.t1 MTR_2g097030 59.545 220 87 1 10 227 34 253 2.98e-95 279
MS.gene29929.t1 MTR_5g079950 59.091 220 88 1 10 227 33 252 4.22e-95 279
MS.gene29929.t1 MTR_3g435430 60.455 220 83 2 10 227 25 242 1.39e-92 272
MS.gene29929.t1 MTR_3g094060 58.636 220 87 2 10 227 31 248 5.30e-91 268
MS.gene29929.t1 MTR_3g094040 58.636 220 87 2 10 227 31 248 8.85e-91 268
MS.gene29929.t1 MTR_5g075320 57.399 223 91 2 10 230 29 249 3.78e-90 266
MS.gene29929.t1 MTR_4g063975 59.729 221 87 1 9 227 31 251 6.33e-90 266
MS.gene29929.t1 MTR_5g041700 58.744 223 88 2 10 230 25 245 1.82e-89 264
MS.gene29929.t1 MTR_4g081950 57.399 223 91 2 10 230 61 281 5.60e-88 261
MS.gene29929.t1 MTR_7g011060 57.727 220 85 2 8 227 24 235 1.22e-85 254
MS.gene29929.t1 MTR_1g026020 54.348 230 100 3 8 233 27 255 1.72e-85 254
MS.gene29929.t1 MTR_3g466760 57.399 223 91 2 10 230 38 258 3.26e-85 254
MS.gene29929.t1 MTR_5g011210 54.148 229 101 3 8 233 35 262 4.63e-85 253
MS.gene29929.t1 MTR_3g466790 57.399 223 91 2 10 230 32 252 1.34e-84 252
MS.gene29929.t1 MTR_4g124340 52.489 221 100 3 10 227 61 279 1.81e-81 245
MS.gene29929.t1 MTR_1g085460 51.724 232 106 4 7 233 27 257 1.69e-80 242
MS.gene29929.t1 MTR_4g102450 51.965 229 106 3 8 233 34 261 8.56e-80 240
MS.gene29929.t1 MTR_7g111010 51.528 229 105 4 10 233 27 254 1.08e-79 239
MS.gene29929.t1 MTR_7g110990 51.528 229 105 4 10 233 12 239 1.19e-79 239
MS.gene29929.t1 MTR_5g076950 51.121 223 106 2 8 228 39 260 3.06e-76 231
MS.gene29929.t1 MTR_0040s0140 49.554 224 111 1 7 228 29 252 1.53e-75 229
MS.gene29929.t1 MTR_6g012520 57.798 218 84 2 10 227 28 237 1.63e-75 229
MS.gene29929.t1 MTR_0008s0120 52.361 233 55 5 1 233 23 199 2.65e-73 221
MS.gene29929.t1 MTR_2g090255 47.768 224 115 1 7 228 25 248 3.00e-73 223
MS.gene29929.t1 MTR_3g064510 46.781 233 109 6 8 228 51 280 9.80e-69 213
MS.gene29929.t1 MTR_2g090270 30.833 240 142 8 6 233 31 258 1.47e-26 103
MS.gene29929.t1 MTR_2g090265 30.544 239 142 8 7 233 30 256 5.53e-25 99.4
MS.gene29929.t1 MTR_0122s0020 30.081 246 146 7 1 233 32 264 1.98e-23 95.5
MS.gene29929.t1 MTR_6g012500 48.421 95 49 0 133 227 181 275 2.65e-22 92.8
MS.gene29929.t1 MTR_4g028640 29.630 243 140 11 6 233 38 264 2.03e-20 87.4
MS.gene29929.t1 MTR_0809s0010 28.033 239 142 9 10 233 47 270 8.49e-19 83.2
MS.gene29929.t1 MTR_0118s0070 27.660 235 142 9 15 233 53 275 1.36e-17 79.7
MS.gene29929.t1 MTR_0122s0020 31.148 183 101 6 1 171 32 201 4.19e-17 77.4
MS.gene29929.t1 MTR_4g099370 28.000 225 147 9 12 229 30 246 2.80e-16 75.9
MS.gene29929.t1 MTR_4g075790 28.692 237 138 8 7 229 20 239 5.97e-16 75.1
MS.gene29929.t1 MTR_5g013440 27.074 229 150 10 13 233 32 251 7.33e-16 74.7
MS.gene29929.t1 MTR_4g098930 27.468 233 137 11 13 229 32 248 4.51e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29929.t1 AT5G39280 63.090 233 84 1 1 233 45 275 1.02e-111 322
MS.gene29929.t1 AT5G39300 63.478 230 82 1 4 233 49 276 1.25e-110 319
MS.gene29929.t1 AT5G39270 63.158 228 82 1 6 233 54 279 8.41e-106 307
MS.gene29929.t1 AT5G39290 62.281 228 84 1 6 233 54 279 1.54e-104 303
MS.gene29929.t1 AT5G02260 61.504 226 84 2 10 233 32 256 1.81e-100 292
MS.gene29929.t1 AT5G39310 60.793 227 86 2 8 233 88 312 2.81e-99 291
MS.gene29929.t1 AT2G39700 61.364 220 83 1 10 227 31 250 2.13e-98 287
MS.gene29929.t1 AT2G37640 60.619 226 86 2 10 233 36 260 8.74e-98 286
MS.gene29929.t1 AT3G55500 61.086 221 84 1 9 227 33 253 3.10e-97 284
MS.gene29929.t1 AT5G56320 58.744 223 88 2 7 227 26 246 1.27e-92 273
MS.gene29929.t1 AT5G56320 58.744 223 88 2 7 227 26 246 1.27e-92 273
MS.gene29929.t1 AT5G56320 58.744 223 88 2 7 227 26 246 5.53e-92 273
MS.gene29929.t1 AT1G69530 58.036 224 90 2 10 231 27 248 4.94e-91 269
MS.gene29929.t1 AT1G69530 57.848 223 90 2 10 230 27 247 7.86e-91 268
MS.gene29929.t1 AT1G69530 57.848 223 90 2 10 230 27 247 7.86e-91 268
MS.gene29929.t1 AT2G28950 58.182 220 90 1 10 227 31 250 1.44e-90 267
MS.gene29929.t1 AT2G37640 60.377 212 81 2 24 233 25 235 3.49e-90 266
MS.gene29929.t1 AT2G40610 57.778 225 90 3 7 228 27 249 3.23e-89 264
MS.gene29929.t1 AT3G29030 60.092 218 80 2 10 227 38 248 5.88e-89 263
MS.gene29929.t1 AT5G05290 57.658 222 89 3 10 228 32 251 6.49e-89 263
MS.gene29929.t1 AT2G03090 56.951 223 92 2 7 227 27 247 1.63e-87 259
MS.gene29929.t1 AT5G39260 54.113 231 98 3 4 233 39 262 2.18e-84 252
MS.gene29929.t1 AT1G12560 53.304 227 101 4 10 233 37 261 6.09e-83 248
MS.gene29929.t1 AT1G62980 51.982 227 105 3 10 233 31 256 2.74e-81 244
MS.gene29929.t1 AT1G26770 55.656 221 94 2 10 228 26 244 1.31e-79 239
MS.gene29929.t1 AT1G26770 55.909 220 93 2 10 227 36 253 1.79e-79 239
MS.gene29929.t1 AT1G69530 60.656 183 68 2 10 190 27 207 1.56e-78 236
MS.gene29929.t1 AT1G69530 60.656 183 68 2 10 190 27 207 2.17e-78 235
MS.gene29929.t1 AT1G20190 50.442 226 107 3 12 233 28 252 8.60e-78 234
MS.gene29929.t1 AT4G01630 49.580 238 114 4 1 233 19 255 1.04e-77 234
MS.gene29929.t1 AT3G03220 50.450 222 107 2 9 228 39 259 3.42e-76 231
MS.gene29929.t1 AT4G38210 44.690 226 121 2 7 228 25 250 4.30e-68 210
MS.gene29929.t1 AT1G20190 49.741 193 92 3 45 233 2 193 1.05e-63 197
MS.gene29929.t1 AT3G15370 45.536 224 114 5 10 229 27 246 3.30e-61 192
MS.gene29929.t1 AT3G15370 46.341 205 102 5 29 229 76 276 1.87e-55 179
MS.gene29929.t1 AT1G65680 31.818 242 138 10 7 233 44 273 6.10e-24 97.1
MS.gene29929.t1 AT2G20750 30.544 239 144 9 8 233 38 267 5.45e-22 91.7
MS.gene29929.t1 AT4G28250 30.738 244 144 9 3 233 29 260 1.09e-21 90.9
MS.gene29929.t1 AT1G65681 30.045 223 133 7 23 233 11 222 7.46e-21 87.8
MS.gene29929.t1 AT4G28250 30.290 241 143 8 3 233 29 254 5.34e-20 86.3
MS.gene29929.t1 AT2G45110 28.085 235 144 7 13 233 36 259 1.73e-19 84.7
MS.gene29929.t1 AT3G60570 27.426 237 146 7 10 233 34 257 2.52e-17 79.0
MS.gene29929.t1 AT2G20750 29.714 175 103 7 8 171 38 203 1.01e-14 71.2
MS.gene29929.t1 AT4G28250 33.333 138 72 5 3 132 29 154 1.49e-14 70.5
MS.gene29929.t1 AT4G28250 33.333 138 72 5 3 132 29 154 1.56e-14 70.5
MS.gene29929.t1 AT3G45970 27.064 218 127 7 29 229 15 217 4.53e-14 69.7
MS.gene29929.t1 AT3G60570 26.147 218 135 7 29 233 5 209 3.90e-13 66.6
MS.gene29929.t1 AT4G17030 28.824 170 95 7 12 170 29 183 1.58e-12 65.5
MS.gene29929.t1 AT3G45970 26.168 214 126 7 33 229 46 244 1.98e-11 62.4
MS.gene29929.t1 AT4G38400 25.346 217 131 7 33 233 47 248 6.88e-11 60.8

Find 54 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTCCACTGATACATAAT+TGG 0.203502 8.2:+45947122 MS.gene29929:CDS
GCTCTTTCCAATTGGCAATT+TGG 0.209639 8.2:+45947241 MS.gene29929:CDS
TAGGACAAGATTTGTCATTT+TGG 0.214033 8.2:+45947176 MS.gene29929:CDS
CCATCAGGTTTGTCGTAATT+TGG 0.225959 8.2:-45946863 None:intergenic
ACGACAAACCTGATGGAAAT+TGG 0.280254 8.2:+45946870 MS.gene29929:CDS
TTGGCATACGGGAGTTAATT+TGG 0.289467 8.2:+45947153 MS.gene29929:CDS
GCAATCCCATTGACTCAAAA+TGG 0.326805 8.2:+45945641 MS.gene29929:CDS
TTTCTAGTCCATATCCTTGT+TGG 0.332104 8.2:-45946703 None:intergenic
AATCTATTCCAACAAGGATA+TGG 0.343227 8.2:+45946695 MS.gene29929:CDS
TACATAATTGGGGACAAGTT+TGG 0.352147 8.2:+45947134 MS.gene29929:CDS
GACTCCACTGATACATAATT+GGG 0.356887 8.2:+45947123 MS.gene29929:CDS
CTTCCGTTGCTCTTTCCAAT+TGG 0.362404 8.2:+45947233 MS.gene29929:CDS
ACCGGACATGTCACCGTAGA+AGG 0.393823 8.2:-45945680 None:intergenic
GGAACACGTCGATATTGAAC+TGG 0.396453 8.2:-45946971 None:intergenic
GATGCCCATGCAACCTTCTA+CGG 0.443217 8.2:+45945667 MS.gene29929:CDS
GACGATCCCTGCTTTGTAAA+CGG 0.444086 8.2:-45946948 None:intergenic
TCAATCAAAGGGTCTAATAC+TGG 0.448813 8.2:+45947097 MS.gene29929:CDS
GGGTTACACCAATTTCCATC+AGG 0.476439 8.2:-45946878 None:intergenic
CATCTTTGATGCACCATTGT+GGG 0.476735 8.2:-45946802 None:intergenic
ACCTTCTACGGTGACATGTC+CGG 0.479848 8.2:+45945679 MS.gene29929:CDS
GGTTTGTCCAAATTGCCAAT+TGG 0.485465 8.2:-45947248 None:intergenic
ACAATTGCCGTTTACAAAGC+AGG 0.492721 8.2:+45946941 MS.gene29929:CDS
TGGGGACAAGTTTGGCATAC+GGG 0.495911 8.2:+45947142 MS.gene29929:CDS
CCAAATTACGACAAACCTGA+TGG 0.508657 8.2:+45946863 MS.gene29929:CDS
CATACGGGAGTTAATTTGGT+AGG 0.509770 8.2:+45947157 MS.gene29929:CDS
CTTACGCATTGTTTCACCAC+CGG 0.520789 8.2:-45945698 None:intergenic
TCAGGTTTGTCGTAATTTGG+TGG 0.534988 8.2:-45946860 None:intergenic
GTTCTGCGTGTGTCAATCAA+AGG 0.536312 8.2:+45947085 MS.gene29929:CDS
TCAAAGGGTCTAATACTGGT+TGG 0.541495 8.2:+45947101 MS.gene29929:CDS
TTGGGGACAAGTTTGGCATA+CGG 0.541700 8.2:+45947141 MS.gene29929:CDS
CGTGTTCCATGCATCAAAAG+TGG 0.563181 8.2:+45946986 MS.gene29929:CDS
GGTGTTAGATTTGAACTAAG+AGG 0.564416 8.2:+45947010 MS.gene29929:CDS
TTCTGCGTGTGTCAATCAAA+GGG 0.565043 8.2:+45947086 MS.gene29929:CDS
GTCAATGGGATTGCGAGCCA+TGG 0.568122 8.2:-45945632 None:intergenic
GTGTATAATGTTGCCAACGC+TGG 0.571182 8.2:+45947058 MS.gene29929:CDS
ACATCTTTGATGCACCATTG+TGG 0.577686 8.2:-45946803 None:intergenic
CAATTGCCGTTTACAAAGCA+GGG 0.578468 8.2:+45946942 MS.gene29929:CDS
ATGCACCACATCTGTAGCCA+TGG 0.588509 8.2:-45946754 None:intergenic
AAAATTGGCGGAGCTTTCGT+AGG 0.592097 8.2:-45947269 None:intergenic
TTCAACCATGGCTACAGATG+TGG 0.594972 8.2:+45946749 MS.gene29929:CDS
TGTCACCGTAGAAGGTTGCA+TGG 0.601270 8.2:-45945672 None:intergenic
GTCACCGTAGAAGGTTGCAT+GGG 0.616077 8.2:-45945671 None:intergenic
TAATGCCGTGCTTAATGCTG+TGG 0.619957 8.2:-45946726 None:intergenic
TTGCCAATTGGAAAGAGCAA+CGG 0.620567 8.2:-45947236 None:intergenic
ACGCAGAACGTCACCAGCGT+TGG 0.624018 8.2:-45947071 None:intergenic
AGCACGGCATTATTCAACCA+TGG 0.632528 8.2:+45946737 MS.gene29929:CDS
TGTCCCCAATTATGTATCAG+TGG 0.635719 8.2:-45947127 None:intergenic
GAACACGTCGATATTGAACT+GGG 0.652049 8.2:-45946970 None:intergenic
AGAAACCACAGCATTAAGCA+CGG 0.676521 8.2:+45946721 MS.gene29929:CDS
GTTCCATGCATCAAAAGTGG+CGG 0.678655 8.2:+45946989 MS.gene29929:CDS
TTCTACGGTGACATGTCCGG+TGG 0.686557 8.2:+45945682 MS.gene29929:CDS
ACTCCACTGATACATAATTG+GGG 0.698539 8.2:+45947124 MS.gene29929:CDS
TATGGCAATCTATTCCAACA+AGG 0.717945 8.2:+45946689 MS.gene29929:CDS
AGTGTGTCAATGACCCACAA+TGG 0.747163 8.2:+45946789 MS.gene29929:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATATATAATAATA+AGG - chr8.2:45946217-45946236 None:intergenic 0.0%
!! AAAAAAATATATAATAATAA+GGG - chr8.2:45946216-45946235 None:intergenic 0.0%
!! TATATACAAAAAACTAATAA+TGG - chr8.2:45946636-45946655 None:intergenic 10.0%
!! ACAACGTATTATTAAATTAA+AGG - chr8.2:45946316-45946335 None:intergenic 15.0%
!! CAACGTATTATTAAATTAAA+GGG - chr8.2:45946315-45946334 None:intergenic 15.0%
!!! ATAACAAATAGATGTTTTTT+AGG - chr8.2:45946596-45946615 None:intergenic 15.0%
!!! ATTATATACTAGTATTTCTA+AGG - chr8.2:45946103-45946122 None:intergenic 15.0%
!!! ATTTTTTTCTAGTTTTTTTG+AGG + chr8.2:45945835-45945854 MS.gene29929:intron 15.0%
!!! TATTTAATTTTGGGTTATTA+GGG + chr8.2:45946129-45946148 MS.gene29929:intron 15.0%
!!! TTATTTAATTTTGGGTTATT+AGG + chr8.2:45946128-45946147 MS.gene29929:intron 15.0%
!! CAAATGGAAAAAGTTATAAA+TGG - chr8.2:45946462-45946481 None:intergenic 20.0%
!! GAAAAAAGTTATAAATGAAG+AGG + chr8.2:45946493-45946512 MS.gene29929:intron 20.0%
!!! TTTTTTGAATGACCTATTAA+GGG - chr8.2:45946248-45946267 None:intergenic 20.0%
! AATAGGTCATTCAAAAAACA+GGG + chr8.2:45946250-45946269 MS.gene29929:intron 25.0%
! ACCAAAACCATCAAAAAATA+AGG - chr8.2:45947040-45947059 None:intergenic 25.0%
! ACTAGAAAAAAATTAGACCA+TGG - chr8.2:45945828-45945847 None:intergenic 25.0%
! CCAAAACCATCAAAAAATAA+GGG - chr8.2:45947039-45947058 None:intergenic 25.0%
! TAAATGACCTATATTACAGA+GGG + chr8.2:45946275-45946294 MS.gene29929:intron 25.0%
! TAATAGGTCATTCAAAAAAC+AGG + chr8.2:45946249-45946268 MS.gene29929:intron 25.0%
!! AATATATTGTATTGATGCAG+AGG + chr8.2:45946655-45946674 MS.gene29929:intron 25.0%
!! AGTATTAAAAGCAGATTTTG+AGG + chr8.2:45945951-45945970 MS.gene29929:intron 25.0%
!! ATATATTGTATTGATGCAGA+GGG + chr8.2:45946656-45946675 MS.gene29929:intron 25.0%
!! TTTTTGAATGACCTATTAAG+GGG - chr8.2:45946247-45946266 None:intergenic 25.0%
!!! AAATCAAAATGTTTTTGAGG+TGG - chr8.2:45946902-45946921 None:intergenic 25.0%
!!! AATCAAAATGTTTTTGAGGT+GGG - chr8.2:45946901-45946920 None:intergenic 25.0%
!!! AGATTTTGAGGTATTCTTTT+CGG + chr8.2:45945963-45945982 MS.gene29929:intron 25.0%
!!! CTCAAATCAAAATGTTTTTG+AGG - chr8.2:45946905-45946924 None:intergenic 25.0%
!!! GTTTTTTGAATGACCTATTA+AGG - chr8.2:45946249-45946268 None:intergenic 25.0%
!!! TTTTCATTTGTTGCAACAAA+TGG - chr8.2:45946478-45946497 None:intergenic 25.0%
!!! TTTTTAGAATACCCCTTAAT+AGG + chr8.2:45946233-45946252 MS.gene29929:intron 25.0%
AAAAAATTACATGGGAAACC+CGG - chr8.2:45946182-45946201 None:intergenic 30.0%
AATCTATTCCAACAAGGATA+TGG + chr8.2:45946695-45946714 MS.gene29929:CDS 30.0%
ATATATATTCGTTCTCACCA+TGG + chr8.2:45945808-45945827 MS.gene29929:intron 30.0%
GTAAATGACCTATATTACAG+AGG + chr8.2:45946274-45946293 MS.gene29929:intron 30.0%
TATAAATGGAGATCTTAACC+CGG - chr8.2:45946448-45946467 None:intergenic 30.0%
TCTGGTATTCTCATGAAAAT+TGG - chr8.2:45946052-45946071 None:intergenic 30.0%
! TATATTGTATTGATGCAGAG+GGG + chr8.2:45946657-45946676 MS.gene29929:intron 30.0%
! TGTTTTACCCTCTGTAATAT+AGG - chr8.2:45946285-45946304 None:intergenic 30.0%
!! TAGGACAAGATTTGTCATTT+TGG + chr8.2:45947176-45947195 MS.gene29929:CDS 30.0%
!!! AGGAAACCCTTATTTTTTGA+TGG + chr8.2:45947030-45947049 MS.gene29929:CDS 30.0%
!!! AGGACAAGATTTGTCATTTT+GGG + chr8.2:45947177-45947196 MS.gene29929:CDS 30.0%
!!! CCCTTATTTTTTGATGGTTT+TGG + chr8.2:45947036-45947055 MS.gene29929:CDS 30.0%
!!! TTCTAGTTTTTTTGAGGCAA+AGG + chr8.2:45945841-45945860 MS.gene29929:intron 30.0%
!!! TTTTGAGATCTGGATATATC+TGG - chr8.2:45946526-45946545 None:intergenic 30.0%
ACTCCACTGATACATAATTG+GGG + chr8.2:45947124-45947143 MS.gene29929:CDS 35.0%
ATATCAGTGAAGAGAGCAAA+AGG - chr8.2:45945744-45945763 None:intergenic 35.0%
CGGATATATCTCATGAAAAG+CGG - chr8.2:45946428-45946447 None:intergenic 35.0%
GACTCCACTGATACATAATT+GGG + chr8.2:45947123-45947142 MS.gene29929:CDS 35.0%
GGTGTTAGATTTGAACTAAG+AGG + chr8.2:45947010-45947029 MS.gene29929:CDS 35.0%
TACATAATTGGGGACAAGTT+TGG + chr8.2:45947134-45947153 MS.gene29929:CDS 35.0%
TATCAGTGAAGAGAGCAAAA+GGG - chr8.2:45945743-45945762 None:intergenic 35.0%
TATGGCAATCTATTCCAACA+AGG + chr8.2:45946689-45946708 MS.gene29929:CDS 35.0%
TCAATCAAAGGGTCTAATAC+TGG + chr8.2:45947097-45947116 MS.gene29929:CDS 35.0%
! ATATTGTATTGATGCAGAGG+GGG + chr8.2:45946658-45946677 MS.gene29929:intron 35.0%
! CGCTTTTCATGAGATATATC+CGG + chr8.2:45946426-45946445 MS.gene29929:intron 35.0%
! GCTTTTCATGAGATATATCC+GGG + chr8.2:45946427-45946446 MS.gene29929:intron 35.0%
! TTTCTAGTCCATATCCTTGT+TGG - chr8.2:45946706-45946725 None:intergenic 35.0%
!!! TAACGTGTGTTTTTGAGATC+TGG - chr8.2:45946536-45946555 None:intergenic 35.0%
!!! TTTTGAGGTATTCTTTTCGG+TGG + chr8.2:45945966-45945985 MS.gene29929:intron 35.0%
ACATCTTTGATGCACCATTG+TGG - chr8.2:45946806-45946825 None:intergenic 40.0%
ACGACAAACCTGATGGAAAT+TGG + chr8.2:45946870-45946889 MS.gene29929:CDS 40.0%
AGAAACCACAGCATTAAGCA+CGG + chr8.2:45946721-45946740 MS.gene29929:CDS 40.0%
ATCAGTGAAGAGAGCAAAAG+GGG - chr8.2:45945742-45945761 None:intergenic 40.0%
CATCTTTGATGCACCATTGT+GGG - chr8.2:45946805-45946824 None:intergenic 40.0%
CCAAATTACGACAAACCTGA+TGG + chr8.2:45946863-45946882 MS.gene29929:CDS 40.0%
CCATCAGGTTTGTCGTAATT+TGG - chr8.2:45946866-45946885 None:intergenic 40.0%
CCTGTAATTTCGGTCATTTC+CGG + chr8.2:45946160-45946179 MS.gene29929:intron 40.0%
CTGTAATTTCGGTCATTTCC+GGG + chr8.2:45946161-45946180 MS.gene29929:intron 40.0%
GAAATGACCGAAATTACAGG+AGG - chr8.2:45946160-45946179 None:intergenic 40.0%
GAACACGTCGATATTGAACT+GGG - chr8.2:45946973-45946992 None:intergenic 40.0%
GCTCTTTCCAATTGGCAATT+TGG + chr8.2:45947241-45947260 MS.gene29929:CDS 40.0%
GGACTCCACTGATACATAAT+TGG + chr8.2:45947122-45947141 MS.gene29929:CDS 40.0%
GGCTTTACCTCCTGTAATTT+CGG + chr8.2:45946150-45946169 MS.gene29929:intron 40.0%
GGTTTGTCCAAATTGCCAAT+TGG - chr8.2:45947251-45947270 None:intergenic 40.0%
TAACGTGTGTATGAGAGATC+TGG - chr8.2:45946070-45946089 None:intergenic 40.0%
TCAAAGGGTCTAATACTGGT+TGG + chr8.2:45947101-45947120 MS.gene29929:CDS 40.0%
TCAGGTTTGTCGTAATTTGG+TGG - chr8.2:45946863-45946882 None:intergenic 40.0%
TGTCCCCAATTATGTATCAG+TGG - chr8.2:45947130-45947149 None:intergenic 40.0%
TTCTGCGTGTGTCAATCAAA+GGG + chr8.2:45947086-45947105 MS.gene29929:CDS 40.0%
TTGCCAATTGGAAAGAGCAA+CGG - chr8.2:45947239-45947258 None:intergenic 40.0%
TTGGCATACGGGAGTTAATT+TGG + chr8.2:45947153-45947172 MS.gene29929:CDS 40.0%
! ACAATTGCCGTTTACAAAGC+AGG + chr8.2:45946941-45946960 MS.gene29929:CDS 40.0%
! CAATTGCCGTTTACAAAGCA+GGG + chr8.2:45946942-45946961 MS.gene29929:CDS 40.0%
! CATACGGGAGTTAATTTGGT+AGG + chr8.2:45947157-45947176 MS.gene29929:CDS 40.0%
!! GCAATCCCATTGACTCAAAA+TGG + chr8.2:45945641-45945660 MS.gene29929:CDS 40.0%
!! GGTATTCTTTTCGGTGGATT+TGG + chr8.2:45945972-45945991 MS.gene29929:intron 40.0%
!! TCGGTGGATTTGGTGAAATT+TGG + chr8.2:45945982-45946001 MS.gene29929:intron 40.0%
!! TTGGTTTGTGAGTGTCGATA+TGG + chr8.2:45946001-45946020 MS.gene29929:intron 40.0%
!!! ATCGTGCCATTTTGAGTCAA+TGG - chr8.2:45945650-45945669 None:intergenic 40.0%
!!! TCGTGCCATTTTGAGTCAAT+GGG - chr8.2:45945649-45945668 None:intergenic 40.0%
AAAATTGGCGGAGCTTTCGT+AGG - chr8.2:45947272-45947291 None:intergenic 45.0%
AGCACGGCATTATTCAACCA+TGG + chr8.2:45946737-45946756 MS.gene29929:CDS 45.0%
AGTGTGTCAATGACCCACAA+TGG + chr8.2:45946789-45946808 MS.gene29929:CDS 45.0%
CCGGAAATGACCGAAATTAC+AGG - chr8.2:45946163-45946182 None:intergenic 45.0%
CGTGTTCCATGCATCAAAAG+TGG + chr8.2:45946986-45947005 MS.gene29929:CDS 45.0%
CTTACGCATTGTTTCACCAC+CGG - chr8.2:45945701-45945720 None:intergenic 45.0%
CTTCCGTTGCTCTTTCCAAT+TGG + chr8.2:45947233-45947252 MS.gene29929:CDS 45.0%
GACGATCCCTGCTTTGTAAA+CGG - chr8.2:45946951-45946970 None:intergenic 45.0%
GGAACACGTCGATATTGAAC+TGG - chr8.2:45946974-45946993 None:intergenic 45.0%
GGGTTACACCAATTTCCATC+AGG - chr8.2:45946881-45946900 None:intergenic 45.0%
GTGTATAATGTTGCCAACGC+TGG + chr8.2:45947058-45947077 MS.gene29929:CDS 45.0%
GTTCCATGCATCAAAAGTGG+CGG + chr8.2:45946989-45947008 MS.gene29929:CDS 45.0%
GTTCTGCGTGTGTCAATCAA+AGG + chr8.2:45947085-45947104 MS.gene29929:CDS 45.0%
TAATGCCGTGCTTAATGCTG+TGG - chr8.2:45946729-45946748 None:intergenic 45.0%
TTCAACCATGGCTACAGATG+TGG + chr8.2:45946749-45946768 MS.gene29929:CDS 45.0%
TTGGGGACAAGTTTGGCATA+CGG + chr8.2:45947141-45947160 MS.gene29929:CDS 45.0%
!! AAAAAATATATAATAATAAG+GGG - chr8.2:45946215-45946234 None:intergenic 5.0%
!! AAATAAATAAAAAATTACAT+GGG - chr8.2:45946190-45946209 None:intergenic 5.0%
!! TAAATAAATAAAAAATTACA+TGG - chr8.2:45946191-45946210 None:intergenic 5.0%
!!! AATAACTATTATTTAATTTT+GGG + chr8.2:45946120-45946139 MS.gene29929:intron 5.0%
!!! TAATAACTATTATTTAATTT+TGG + chr8.2:45946119-45946138 MS.gene29929:intron 5.0%
ACCTTCTACGGTGACATGTC+CGG + chr8.2:45945679-45945698 MS.gene29929:CDS 50.0%
ATGCACCACATCTGTAGCCA+TGG - chr8.2:45946757-45946776 None:intergenic 50.0%
GATGCCCATGCAACCTTCTA+CGG + chr8.2:45945667-45945686 MS.gene29929:CDS 50.0%
GTCACCGTAGAAGGTTGCAT+GGG - chr8.2:45945674-45945693 None:intergenic 50.0%
TGGGGACAAGTTTGGCATAC+GGG + chr8.2:45947142-45947161 MS.gene29929:CDS 50.0%
TGTCACCGTAGAAGGTTGCA+TGG - chr8.2:45945675-45945694 None:intergenic 50.0%
!!! ACACCGCCACTTTTGATGCA+TGG - chr8.2:45946995-45947014 None:intergenic 50.0%
ACCGGACATGTCACCGTAGA+AGG - chr8.2:45945683-45945702 None:intergenic 55.0%
ATTGATGCAGAGGGGGCTTG+CGG + chr8.2:45946665-45946684 MS.gene29929:intron 55.0%
TTCTACGGTGACATGTCCGG+TGG + chr8.2:45945682-45945701 MS.gene29929:CDS 55.0%
ACGCAGAACGTCACCAGCGT+TGG - chr8.2:45947074-45947093 None:intergenic 60.0%
GCAGAGGGGGCTTGCGGCTA+TGG + chr8.2:45946671-45946690 MS.gene29929:intron 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 45945634 45947294 45945634 ID=MS.gene29929
chr8.2 mRNA 45945634 45947294 45945634 ID=MS.gene29929.t1;Parent=MS.gene29929
chr8.2 exon 45945634 45945715 45945634 ID=MS.gene29929.t1.exon1;Parent=MS.gene29929.t1
chr8.2 CDS 45945634 45945715 45945634 ID=cds.MS.gene29929.t1;Parent=MS.gene29929.t1
chr8.2 exon 45946675 45947294 45946675 ID=MS.gene29929.t1.exon2;Parent=MS.gene29929.t1
chr8.2 CDS 45946675 45947294 45946675 ID=cds.MS.gene29929.t1;Parent=MS.gene29929.t1
Gene Sequence

>MS.gene29929

ATGGCTCGCAATCCCATTGACTCAAAATGGCACGATGCCCATGCAACCTTCTACGGTGACATGTCCGGTGGTGAAACAATGCGTAAGTATCAAATCAAAATAACTCCCCTTTTGCTCTCTTCACTGATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCGTTCTCACCATGGTCTAATTTTTTTCTAGTTTTTTTGAGGCAAAGGTCTAATTTTTCTTTTTAATAGCACTTTTAGTTTTTATCTATTATAATACATAGATCAAATTAGATTCACAGCATTAACGTAGTTTTGAGTATTAAAAGCAGATTTTGAGGTATTCTTTTCGGTGGATTTGGTGAAATTTGGTTTGTGAGTGTCGATATGGCTTGACTATATTTATGAAAATACGACCAATTTTCATGAGAATACCAGATCTCTCATACACACGTTAAATGTTGATTCCTTAGAAATACTAGTATATAATAACTATTATTTAATTTTGGGTTATTAGGGCTTTACCTCCTGTAATTTCGGTCATTTCCGGGTTTCCCATGTAATTTTTTATTTATTTATCCCCTTATTATTATATATTTTTTTTTAGAATACCCCTTAATAGGTCATTCAAAAAACAGGGAGTAAATGACCTATATTACAGAGGGTAAAACACTATTAACCCTTTAATTTAATAATACGTTGTATAATTATTCTTTTTATGATATATTAGTCATACATACATAAAGATACTCATTAGTAGTGTATCAATATGAATTGACTATGTTTATTAGACCGCTTTTCATGAGATATATCCGGGTTAAGATCTCCATTTATAACTTTTTCCATTTGTTGCAACAAATGAAAAAAGTTATAAATGAAGAGGATCTTTACCAGATATATCCAGATCTCAAAAACACACGTTAAATTTGTTTGATGTGAAACTCACATTAAATGTTGATTCCTAAAAAACATCTATTTGTTATTTTGTAATTTATTTATGCCATTATTAGTTTTTTGTATATAATATATTGTATTGATGCAGAGGGGGCTTGCGGCTATGGCAATCTATTCCAACAAGGATATGGACTAGAAACCACAGCATTAAGCACGGCATTATTCAACCATGGCTACAGATGTGGTGCATGCTTTGAGATTAAGTGTGTCAATGACCCACAATGGTGCATCAAAGATGTTAACTCAATCACTGTGACAGCGACAAATTTTTGTCCACCAAATTACGACAAACCTGATGGAAATTGGTGTAACCCACCTCAAAAACATTTTGATTTGAGCATGAAGATGTTTACAACAATTGCCGTTTACAAAGCAGGGATCGTCCCAGTTCAATATCGACGTGTTCCATGCATCAAAAGTGGCGGTGTTAGATTTGAACTAAGAGGAAACCCTTATTTTTTGATGGTTTTGGTGTATAATGTTGCCAACGCTGGTGACGTTCTGCGTGTGTCAATCAAAGGGTCTAATACTGGTTGGACTCCACTGATACATAATTGGGGACAAGTTTGGCATACGGGAGTTAATTTGGTAGGACAAGATTTGTCATTTTGGGTTACGACAAGTGATCGAAAAGCTTTACTGTTCACTTCCGTTGCTCTTTCCAATTGGCAATTTGGACAAACCTACGAAAGCTCCGCCAATTTTTAG
Protein sequence

>MS.gene29929.t1

MARNPIDSKWHDAHATFYGDMSGGETMQGACGYGNLFQQGYGLETTALSTALFNHGYRCGACFEIKCVNDPQWCIKDVNSITVTATNFCPPNYDKPDGNWCNPPQKHFDLSMKMFTTIAVYKAGIVPVQYRRVPCIKSGGVRFELRGNPYFLMVLVYNVANAGDVLRVSIKGSNTGWTPLIHNWGQVWHTGVNLVGQDLSFWVTTSDRKALLFTSVALSNWQFGQTYESSANF