AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30308

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30308.t1 MTR_8g019480 99.148 352 3 0 1 352 1 352 0.0 715
MS.gene30308.t1 MTR_3g104810 64.689 354 114 4 1 349 1 348 3.45e-157 444
MS.gene30308.t1 MTR_7g015870 46.505 329 146 5 21 345 9 311 2.28e-94 285
MS.gene30308.t1 MTR_7g015870 46.933 326 143 5 27 348 19 318 3.15e-94 283
MS.gene30308.t1 MTR_6g015860 45.075 335 154 6 21 351 5 313 9.95e-94 282
MS.gene30308.t1 MTR_2g032610 40.426 329 167 6 21 344 17 321 1.53e-81 251
MS.gene30308.t1 MTR_1g097890 26.797 306 166 7 43 348 61 308 1.16e-25 105
MS.gene30308.t1 MTR_8g092080 27.124 306 165 9 43 348 62 309 2.11e-21 93.6
MS.gene30308.t1 MTR_5g073040 27.331 311 174 7 47 349 53 319 4.86e-21 92.8
MS.gene30308.t1 MTR_5g073040 30.928 194 101 6 41 218 135 311 3.29e-12 67.0
MS.gene30308.t1 MTR_4g114320 24.921 317 195 8 34 348 123 398 9.88e-21 92.8
MS.gene30308.t1 MTR_6g034515 27.181 298 157 12 45 330 79 328 3.37e-19 87.8
MS.gene30308.t1 MTR_6g034515 30.857 175 114 5 44 218 171 338 7.07e-11 63.2
MS.gene30308.t1 MTR_4g012850 23.962 313 201 7 40 350 21 298 3.04e-17 81.6
MS.gene30308.t1 MTR_8g098240 26.101 318 185 10 27 341 314 584 2.82e-16 80.5
MS.gene30308.t1 MTR_1g012030 24.324 296 182 8 49 343 155 409 5.55e-16 79.0
MS.gene30308.t1 MTR_1g012030 25.581 215 120 4 132 346 140 314 7.92e-12 66.2
MS.gene30308.t1 MTR_4g088545 24.290 317 199 11 37 343 14 299 3.43e-15 75.5
MS.gene30308.t1 MTR_7g068340 26.794 209 132 5 35 241 187 376 9.28e-15 75.1
MS.gene30308.t1 MTR_7g064980 24.828 290 179 7 62 348 65 318 1.84e-14 73.6
MS.gene30308.t1 MTR_7g109135 23.432 303 189 8 49 343 38 305 2.31e-14 73.6
MS.gene30308.t1 MTR_8g076760 24.116 311 199 9 47 347 28 311 1.69e-13 70.9
MS.gene30308.t1 MTR_2g102010 25.818 275 166 7 48 320 32 270 2.28e-13 70.1
MS.gene30308.t1 MTR_8g027975 30.846 201 124 7 35 221 154 353 3.87e-13 70.1
MS.gene30308.t1 MTR_8g027975 23.929 280 174 6 77 343 99 352 7.13e-12 66.2
MS.gene30308.t1 MTR_4g016730 28.272 191 102 5 35 221 196 355 4.98e-13 69.7
MS.gene30308.t1 MTR_5g009500 29.500 200 126 7 35 221 141 338 2.71e-12 67.4
MS.gene30308.t1 MTR_5g009500 25.180 278 171 6 75 341 84 335 2.74e-11 64.3
MS.gene30308.t1 MTR_5g055410 29.756 205 112 8 49 238 135 322 6.29e-12 66.2
MS.gene30308.t1 MTR_5g055410 25.828 302 183 9 49 343 37 304 1.12e-11 65.5
MS.gene30308.t1 MTR_1g087840 24.759 311 175 10 49 343 35 302 1.13e-11 65.5
MS.gene30308.t1 MTR_2g098070 30.921 152 85 4 74 223 221 354 1.46e-11 65.5
MS.gene30308.t1 MTR_2g436930 23.929 280 168 9 73 339 72 319 1.63e-11 65.1
MS.gene30308.t1 MTR_2g436930 28.191 188 121 7 41 216 134 319 6.88e-11 63.2
MS.gene30308.t1 MTR_3g107510 26.484 219 113 5 124 342 123 293 1.74e-11 65.5
MS.gene30308.t1 MTR_7g084400 29.319 191 114 5 34 219 309 483 2.38e-11 65.1
MS.gene30308.t1 MTR_4g088545 24.336 226 136 6 120 341 1 195 2.95e-11 63.2
MS.gene30308.t1 MTR_4g119770 29.319 191 113 8 40 214 134 318 3.21e-11 63.9
MS.gene30308.t1 MTR_4g057850 24.830 294 161 10 44 322 33 281 3.59e-11 63.9
MS.gene30308.t1 MTR_2g436930 28.191 188 121 7 41 216 44 229 3.95e-11 62.8
MS.gene30308.t1 MTR_3g025800 26.103 272 160 6 33 286 28 276 4.92e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30308.t1 AT1G72820 72.727 352 84 5 1 349 1 343 6.20e-180 502
MS.gene30308.t1 AT1G72820 72.727 352 84 5 1 349 1 343 6.20e-180 502
MS.gene30308.t1 AT5G26200 62.242 339 107 3 15 349 21 342 5.53e-149 424
MS.gene30308.t1 AT5G15640 47.416 329 145 6 21 345 16 320 9.45e-95 285
MS.gene30308.t1 AT5G15640 47.256 328 144 7 22 345 11 313 5.94e-92 278
MS.gene30308.t1 AT1G34065 25.974 308 169 8 43 349 92 341 2.93e-22 96.7
MS.gene30308.t1 AT1G34065 25.974 308 169 8 43 349 85 334 2.98e-22 96.3
MS.gene30308.t1 AT4G11440 26.100 341 209 9 3 341 301 600 9.82e-22 97.1
MS.gene30308.t1 AT4G11440 26.100 341 209 9 3 341 301 600 9.82e-22 97.1
MS.gene30308.t1 AT2G37890 27.208 283 160 9 68 343 88 331 1.60e-19 88.6
MS.gene30308.t1 AT1G07030 27.273 319 185 7 31 343 38 315 1.22e-18 85.9
MS.gene30308.t1 AT4G39460 25.817 306 169 9 43 348 68 315 1.29e-18 85.9
MS.gene30308.t1 AT4G39460 25.817 306 169 9 43 348 68 315 1.29e-18 85.9
MS.gene30308.t1 AT4G39460 25.817 306 169 9 43 348 68 315 1.29e-18 85.9
MS.gene30308.t1 AT2G30160 27.815 302 176 9 47 343 56 320 7.10e-18 84.0
MS.gene30308.t1 AT2G30160 31.606 193 113 5 37 218 134 318 1.75e-13 70.9
MS.gene30308.t1 AT2G30160 26.066 211 116 5 132 342 43 213 3.10e-12 67.4
MS.gene30308.t1 AT3G53940 26.354 277 160 7 73 343 121 359 8.87e-16 78.2
MS.gene30308.t1 AT3G20240 25.914 301 172 8 34 320 52 315 6.51e-15 75.5
MS.gene30308.t1 AT3G20240 29.444 180 105 6 41 214 169 332 6.22e-13 69.3
MS.gene30308.t1 AT4G32400 23.585 318 200 9 34 349 114 390 9.95e-15 75.1
MS.gene30308.t1 AT1G79900 24.746 295 178 8 48 342 31 281 6.68e-14 71.6
MS.gene30308.t1 AT1G79900 29.050 179 112 3 44 222 121 284 1.04e-11 65.5
MS.gene30308.t1 AT5G01340 28.041 296 150 12 44 322 28 277 6.22e-13 68.9
MS.gene30308.t1 AT1G25380 25.243 309 177 9 49 343 37 305 1.18e-12 68.6
MS.gene30308.t1 AT1G25380 25.243 309 177 9 49 343 37 305 1.18e-12 68.6
MS.gene30308.t1 AT5G48970 23.782 349 207 10 19 339 12 329 1.44e-12 68.2
MS.gene30308.t1 AT3G51870 25.926 189 119 3 35 221 191 360 2.28e-12 67.8
MS.gene30308.t1 AT5G66380 24.430 307 196 9 45 343 22 300 2.55e-12 67.4
MS.gene30308.t1 AT5G51050 23.750 320 201 9 25 342 215 493 4.12e-12 67.4
MS.gene30308.t1 AT5G48970 24.460 278 174 7 72 339 7 258 4.44e-12 66.2
MS.gene30308.t1 AT5G48970 27.193 228 120 9 11 214 51 256 3.28e-11 63.5
MS.gene30308.t1 AT2G47490 25.000 308 177 10 49 343 33 299 8.46e-12 65.9
MS.gene30308.t1 AT1G74240 24.611 321 182 13 29 322 27 314 1.69e-11 65.1
MS.gene30308.t1 AT1G14560 22.185 302 191 7 51 341 49 317 3.13e-11 64.3
MS.gene30308.t1 AT4G01100 28.436 211 134 8 35 231 95 302 3.31e-11 63.9
MS.gene30308.t1 AT3G54110 25.902 305 175 10 49 342 31 295 3.50e-11 63.9
MS.gene30308.t1 AT1G74240 25.168 298 168 12 47 322 2 266 5.36e-11 63.5
MS.gene30308.t1 AT4G01100 28.436 211 134 8 35 231 145 352 5.40e-11 63.5
MS.gene30308.t1 AT4G01100 28.436 211 134 8 35 231 159 366 7.66e-11 63.2
MS.gene30308.t1 AT5G46800 26.606 218 122 7 132 341 109 296 7.71e-11 62.8
MS.gene30308.t1 AT5G46800 26.606 218 122 7 132 341 109 296 7.71e-11 62.8
MS.gene30308.t1 AT5G46800 26.606 218 122 7 132 341 109 296 7.71e-11 62.8

Find 98 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGGTTTGTATAGAGGTTT+TGG 0.169259 8.3:+71418875 MS.gene30308:CDS
CTGTTGCACAAAGGATGGTT+TGG 0.306479 8.3:+71418951 MS.gene30308:CDS
CGGGTTTGGTACTTCGTTGA+TGG 0.314901 8.3:+71418559 MS.gene30308:CDS
GGAACTGCTACTGTTGGTTT+TGG 0.344381 8.3:+71418641 MS.gene30308:CDS
GATGCAGACGGTTAGAAGTT+TGG 0.354056 8.3:+71419204 MS.gene30308:CDS
GCAATTGCTAATGCGGTTGC+TGG 0.368970 8.3:+71418686 MS.gene30308:CDS
TGTTGCACAAAGGATGGTTT+GGG 0.377065 8.3:+71418952 MS.gene30308:CDS
AGAGCGTTGTATCGCGGGTT+TGG 0.379134 8.3:+71418545 MS.gene30308:CDS
TCGTCTGTAAGATATGTTAA+TGG 0.389810 8.3:+71418812 MS.gene30308:CDS
CCCGGCTAGGGCGTTGTATA+TGG 0.394032 8.3:+71418589 MS.gene30308:CDS
TAAAACCTCTTGATTCTTTG+CGG 0.394234 8.3:-71419338 None:intergenic
GGTTGGATGGCTTGTTATAG+AGG 0.399503 8.3:+71419238 MS.gene30308:CDS
ATGGCTTGTTATAGAGGATT+GGG 0.407744 8.3:+71419244 MS.gene30308:CDS
AGGATGGTTTGGGGTGGAGT+TGG 0.412562 8.3:+71418962 MS.gene30308:CDS
ATGTTCCAGCTGAAATTGAT+TGG 0.414525 8.3:+71418357 MS.gene30308:CDS
ATAGAGGATTGGGACCTAGA+TGG 0.418086 8.3:+71419254 MS.gene30308:CDS
GGTCCTAGGGGTTTGTATAG+AGG 0.420101 8.3:+71418869 MS.gene30308:CDS
TGCTTTGATTACTATGCCAT+TGG 0.422067 8.3:+71419117 MS.gene30308:CDS
TACCTTGAACCATCAACCTT+TGG 0.422147 8.3:-71418763 None:intergenic
ACAAGGCTGCAGGTCTTAGA+TGG 0.426779 8.3:+71419151 MS.gene30308:CDS
GATGGCTTGTTATAGAGGAT+TGG 0.434742 8.3:+71419243 MS.gene30308:CDS
TGAGGAAGAGGTAGAGTCAG+AGG 0.443657 8.3:+71418325 MS.gene30308:CDS
GGTTTAGAGCGTTGTATCGC+GGG 0.444190 8.3:+71418540 MS.gene30308:CDS
GACGGTTAGAAGTTTGGTTA+AGG 0.449500 8.3:+71419210 MS.gene30308:CDS
GGTTAAGGAAGGTGGTTGGA+TGG 0.449945 8.3:+71419225 MS.gene30308:CDS
TTGTGAGAACGGATGGTCCT+AGG 0.450225 8.3:+71418855 MS.gene30308:CDS
TTGTAATTCAAGTGATCCTA+AGG 0.453755 8.3:+71418787 MS.gene30308:CDS
TGTTGTGAGCCAAAGGTTGA+TGG 0.459063 8.3:+71418754 MS.gene30308:CDS
GCCATATACAACGCCCTAGC+CGG 0.460196 8.3:-71418590 None:intergenic
CTCCCCTTTAATTAACGAAA+AGG 0.460625 8.3:-71418516 None:intergenic
AGAAGTTTGGTTAAGGAAGG+TGG 0.466995 8.3:+71419217 MS.gene30308:CDS
TTCGTTGATGGGTACGATCC+CGG 0.468966 8.3:+71418571 MS.gene30308:CDS
CTGTTGTTGTGTTGAAAACT+AGG 0.469626 8.3:+71418453 MS.gene30308:CDS
ATGCGCCTTCAAATGCAGTA+TGG 0.472358 8.3:+71418915 MS.gene30308:CDS
AGGAAAATTGTGAGAACGGA+TGG 0.476248 8.3:+71418848 MS.gene30308:CDS
GGGTTTGGTACTTCGTTGAT+GGG 0.476339 8.3:+71418560 MS.gene30308:CDS
GTTAGAAGTTTGGTTAAGGA+AGG 0.488369 8.3:+71419214 MS.gene30308:CDS
GCCCACCATACTGCATTTGA+AGG 0.489267 8.3:-71418920 None:intergenic
CTTTGGCTCACAACATCAAT+CGG 0.491438 8.3:-71418746 None:intergenic
AAAACTGTTATGGCAGTTCA+GGG 0.494556 8.3:+71419064 MS.gene30308:CDS
AGCCAAAGGTTGATGGTTCA+AGG 0.498610 8.3:+71418761 MS.gene30308:CDS
AGCAGTTCCTACATTACTCT+TGG 0.499952 8.3:-71418627 None:intergenic
GTCTTAGATGGCGATGAGAA+TGG 0.502262 8.3:+71419163 MS.gene30308:CDS
CCATATACAACGCCCTAGCC+GGG 0.504449 8.3:-71418589 None:intergenic
TGTGAGAACGGATGGTCCTA+GGG 0.509331 8.3:+71418856 MS.gene30308:CDS
TAGAGGATTGGGACCTAGAT+GGG 0.510090 8.3:+71419255 MS.gene30308:CDS
TGATGGGTACGATCCCGGCT+AGG 0.513383 8.3:+71418576 MS.gene30308:CDS
ATTTGCCAATCAATTTCAGC+TGG 0.515337 8.3:-71418362 None:intergenic
TTTGAGTGTGAATGAGGAAG+AGG 0.516208 8.3:+71418313 MS.gene30308:CDS
GGAATCAGTGCAGCAATGGC+AGG 0.517764 8.3:+71419085 MS.gene30308:CDS
ATATTCTGTTGCACAAAGGA+TGG 0.521296 8.3:+71418946 MS.gene30308:CDS
GATGGGTACGATCCCGGCTA+GGG 0.521692 8.3:+71418577 MS.gene30308:CDS
TTTCGTTAATTAAAGGGGAG+GGG 0.524720 8.3:+71418519 MS.gene30308:CDS
CTTTAGCAGCTCAGCTTGTG+TGG 0.529736 8.3:+71418720 MS.gene30308:CDS
GTTTGGTTAAGGAAGGTGGT+TGG 0.535300 8.3:+71419221 MS.gene30308:CDS
TACAATCAAGACAAGGCTGC+AGG 0.537518 8.3:+71419141 MS.gene30308:CDS
AATGTAGGAACTGCTACTGT+TGG 0.541302 8.3:+71418635 MS.gene30308:CDS
AACGACATTGAAGCCCATCT+AGG 0.543587 8.3:-71419268 None:intergenic
TATCTTACAGACGAACCCTT+AGG 0.545681 8.3:-71418803 None:intergenic
GAGGTTACCAAGAGTAATGT+AGG 0.546410 8.3:+71418620 MS.gene30308:CDS
CGCCTTCAAATGCAGTATGG+TGG 0.550964 8.3:+71418918 MS.gene30308:CDS
ACTTGAGTAACAAGAAAGGT+GGG 0.552159 8.3:+71418990 MS.gene30308:CDS
GGAAGTCACAACAACAATGG+AGG 0.554499 8.3:+71419016 MS.gene30308:CDS
GCCTTCAAATGCAGTATGGT+GGG 0.558047 8.3:+71418919 MS.gene30308:CDS
CTTGTCTTGATTGTATCCAA+TGG 0.562754 8.3:-71419133 None:intergenic
TACTTGAGTAACAAGAAAGG+TGG 0.572354 8.3:+71418989 MS.gene30308:CDS
TTAGCAATTGCAGCAGCCGT+CGG 0.572422 8.3:-71418674 None:intergenic
GGCGATGAGAATGGCCGTCG+TGG 0.574613 8.3:+71419172 MS.gene30308:CDS
TCAGGGAATCAGTGCAGCAA+TGG 0.574833 8.3:+71419081 MS.gene30308:CDS
GGCTGCTGCAATTGCTAATG+CGG 0.580901 8.3:+71418679 MS.gene30308:CDS
AATGGATTTGAGTGTGAATG+AGG 0.583175 8.3:+71418307 None:intergenic
GGGTTTAGAGCGTTGTATCG+CGG 0.584544 8.3:+71418539 MS.gene30308:CDS
GTTGTATATGGCAGCGCTTG+AGG 0.586997 8.3:+71418601 MS.gene30308:CDS
AGGGGCTAATGTGTTGAGGC+CGG 0.590691 8.3:+71419036 MS.gene30308:CDS
GAAGTCACAACAACAATGGA+GGG 0.599876 8.3:+71419017 MS.gene30308:CDS
TGTAATTCAAGTGATCCTAA+GGG 0.603205 8.3:+71418788 MS.gene30308:CDS
CCCTTTAATTAACGAAAAGG+CGG 0.606288 8.3:-71418513 None:intergenic
GTTGCACAAAGGATGGTTTG+GGG 0.609426 8.3:+71418953 MS.gene30308:CDS
CGATTGATGTTGTGAGCCAA+AGG 0.611253 8.3:+71418747 MS.gene30308:CDS
CTTCATATTCTGTTGCACAA+AGG 0.611809 8.3:+71418942 MS.gene30308:CDS
TATTACTTGAGTAACAAGAA+AGG 0.614289 8.3:+71418986 MS.gene30308:CDS
GCTTTCCGCAAAGAATCAAG+AGG 0.618949 8.3:+71419333 MS.gene30308:CDS
AAACCTCTATACAAACCCCT+AGG 0.620850 8.3:-71418872 None:intergenic
GAGGGAAGTCACAACAACAA+TGG 0.621111 8.3:+71419013 MS.gene30308:CDS
AGTAACAAGAAAGGTGGGGA+GGG 0.623934 8.3:+71418995 MS.gene30308:CDS
ATCAGTGCAGCAATGGCAGG+AGG 0.625647 8.3:+71419088 MS.gene30308:CDS
GCACAAAGGATGGTTTGGGG+TGG 0.629155 8.3:+71418956 MS.gene30308:CDS
GAGTAACAAGAAAGGTGGGG+AGG 0.639195 8.3:+71418994 MS.gene30308:CDS
CTTGAGTAACAAGAAAGGTG+GGG 0.640700 8.3:+71418991 MS.gene30308:CDS
ATGGAGGGGCTAATGTGTTG+AGG 0.647603 8.3:+71419032 MS.gene30308:CDS
CTAACCGTCTGCATCACTGT+TGG 0.653039 8.3:-71419196 None:intergenic
TGCGGTTGCTGGTTTGACTG+CGG 0.661120 8.3:+71418697 MS.gene30308:CDS
GCATCACTGTTGGTCCACGA+CGG 0.662402 8.3:-71419186 None:intergenic
GTGAGAACGGATGGTCCTAG+GGG 0.680233 8.3:+71418857 MS.gene30308:CDS
CATTGGATACAATCAAGACA+AGG 0.683298 8.3:+71419134 MS.gene30308:CDS
CAGAAAACAAAGCAGCACCG+AGG 0.690959 8.3:-71418409 None:intergenic
TGGACCAACAGTGATGCAGA+CGG 0.713938 8.3:+71419192 MS.gene30308:CDS
AAGTCACAACAACAATGGAG+GGG 0.716540 8.3:+71419018 MS.gene30308:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TATTACTTGAGTAACAAGAA+AGG + chr8.3:71418986-71419005 MS.gene30308:CDS 25.0%
!!! TTAATGGTATTGATGCTTTT+AGG + chr8.3:71418828-71418847 MS.gene30308:CDS 25.0%
!!! TTTTAGGAAAATTGTGAGAA+CGG + chr8.3:71418844-71418863 MS.gene30308:CDS 25.0%
TAAAACCTCTTGATTCTTTG+CGG - chr8.3:71419341-71419360 None:intergenic 30.0%
TCGTCTGTAAGATATGTTAA+TGG + chr8.3:71418812-71418831 MS.gene30308:CDS 30.0%
TGTAATTCAAGTGATCCTAA+GGG + chr8.3:71418788-71418807 MS.gene30308:CDS 30.0%
TTGTAATTCAAGTGATCCTA+AGG + chr8.3:71418787-71418806 MS.gene30308:CDS 30.0%
! AAATCCAAGTTTTTCTTCCT+CGG + chr8.3:71418392-71418411 MS.gene30308:CDS 30.0%
! TTTTCGTTAATTAAAGGGGA+GGG + chr8.3:71418518-71418537 MS.gene30308:CDS 30.0%
!! CAACCTATGAGCTTTTAAAA+CGG + chr8.3:71419311-71419330 MS.gene30308:CDS 30.0%
AAAAACTGTTATGGCAGTTC+AGG + chr8.3:71419063-71419082 MS.gene30308:CDS 35.0%
AAAACTGTTATGGCAGTTCA+GGG + chr8.3:71419064-71419083 MS.gene30308:CDS 35.0%
ACTTGAGTAACAAGAAAGGT+GGG + chr8.3:71418990-71419009 MS.gene30308:CDS 35.0%
ATATTCTGTTGCACAAAGGA+TGG + chr8.3:71418946-71418965 MS.gene30308:CDS 35.0%
ATGTTCCAGCTGAAATTGAT+TGG + chr8.3:71418357-71418376 MS.gene30308:CDS 35.0%
ATTTGCCAATCAATTTCAGC+TGG - chr8.3:71418365-71418384 None:intergenic 35.0%
CATTGGATACAATCAAGACA+AGG + chr8.3:71419134-71419153 MS.gene30308:CDS 35.0%
CCCTTTAATTAACGAAAAGG+CGG - chr8.3:71418516-71418535 None:intergenic 35.0%
CTCCCCTTTAATTAACGAAA+AGG - chr8.3:71418519-71418538 None:intergenic 35.0%
CTGTTGTTGTGTTGAAAACT+AGG + chr8.3:71418453-71418472 MS.gene30308:CDS 35.0%
CTTCATATTCTGTTGCACAA+AGG + chr8.3:71418942-71418961 MS.gene30308:CDS 35.0%
CTTGTCTTGATTGTATCCAA+TGG - chr8.3:71419136-71419155 None:intergenic 35.0%
GTTAGAAGTTTGGTTAAGGA+AGG + chr8.3:71419214-71419233 MS.gene30308:CDS 35.0%
TACTTGAGTAACAAGAAAGG+TGG + chr8.3:71418989-71419008 MS.gene30308:CDS 35.0%
TGCTTTGATTACTATGCCAT+TGG + chr8.3:71419117-71419136 MS.gene30308:CDS 35.0%
TTTCGTTAATTAAAGGGGAG+GGG + chr8.3:71418519-71418538 MS.gene30308:CDS 35.0%
! ACCGCCTTTTCGTTAATTAA+AGG + chr8.3:71418512-71418531 MS.gene30308:CDS 35.0%
! CCGCCTTTTCGTTAATTAAA+GGG + chr8.3:71418513-71418532 MS.gene30308:CDS 35.0%
! CGCCTTTTCGTTAATTAAAG+GGG + chr8.3:71418514-71418533 MS.gene30308:CDS 35.0%
! CTTTTCGTTAATTAAAGGGG+AGG + chr8.3:71418517-71418536 MS.gene30308:CDS 35.0%
! GCCATAACAGTTTTTGTATC+CGG - chr8.3:71419058-71419077 None:intergenic 35.0%
!! ATGGCTTGTTATAGAGGATT+GGG + chr8.3:71419244-71419263 MS.gene30308:CDS 35.0%
!! CTAGTTTTCAACACAACAAC+AGG - chr8.3:71418455-71418474 None:intergenic 35.0%
!!! AAGCCGTTTTAAAAGCTCAT+AGG - chr8.3:71419317-71419336 None:intergenic 35.0%
!!! GTATAGAGGTTTTGGGATAT+CGG + chr8.3:71418883-71418902 MS.gene30308:CDS 35.0%
AAACCTCTATACAAACCCCT+AGG - chr8.3:71418875-71418894 None:intergenic 40.0%
AAGTCACAACAACAATGGAG+GGG + chr8.3:71419018-71419037 MS.gene30308:CDS 40.0%
AATGTAGGAACTGCTACTGT+TGG + chr8.3:71418635-71418654 MS.gene30308:CDS 40.0%
AGAAGTTTGGTTAAGGAAGG+TGG + chr8.3:71419217-71419236 MS.gene30308:CDS 40.0%
AGCAGTTCCTACATTACTCT+TGG - chr8.3:71418630-71418649 None:intergenic 40.0%
AGGAAAATTGTGAGAACGGA+TGG + chr8.3:71418848-71418867 MS.gene30308:CDS 40.0%
CTTGAGTAACAAGAAAGGTG+GGG + chr8.3:71418991-71419010 MS.gene30308:CDS 40.0%
GAAGTCACAACAACAATGGA+GGG + chr8.3:71419017-71419036 MS.gene30308:CDS 40.0%
GACGGTTAGAAGTTTGGTTA+AGG + chr8.3:71419210-71419229 MS.gene30308:CDS 40.0%
GAGGTTACCAAGAGTAATGT+AGG + chr8.3:71418620-71418639 MS.gene30308:CDS 40.0%
GCCGGATACAAAAACTGTTA+TGG + chr8.3:71419054-71419073 MS.gene30308:CDS 40.0%
TACCTTGAACCATCAACCTT+TGG - chr8.3:71418766-71418785 None:intergenic 40.0%
TATCTTACAGACGAACCCTT+AGG - chr8.3:71418806-71418825 None:intergenic 40.0%
TGTTGCACAAAGGATGGTTT+GGG + chr8.3:71418952-71418971 MS.gene30308:CDS 40.0%
TTTGAGTGTGAATGAGGAAG+AGG + chr8.3:71418313-71418332 MS.gene30308:CDS 40.0%
! AGGGGTTTGTATAGAGGTTT+TGG + chr8.3:71418875-71418894 MS.gene30308:CDS 40.0%
! CTTTGGCTCACAACATCAAT+CGG - chr8.3:71418749-71418768 None:intergenic 40.0%
! GGGGTTTGTATAGAGGTTTT+GGG + chr8.3:71418876-71418895 MS.gene30308:CDS 40.0%
!! GATGGCTTGTTATAGAGGAT+TGG + chr8.3:71419243-71419262 MS.gene30308:CDS 40.0%
AACGACATTGAAGCCCATCT+AGG - chr8.3:71419271-71419290 None:intergenic 45.0%
AGTAACAAGAAAGGTGGGGA+GGG + chr8.3:71418995-71419014 MS.gene30308:CDS 45.0%
ATAGAGGATTGGGACCTAGA+TGG + chr8.3:71419254-71419273 MS.gene30308:CDS 45.0%
ATGCGCCTTCAAATGCAGTA+TGG + chr8.3:71418915-71418934 MS.gene30308:CDS 45.0%
CGATTGATGTTGTGAGCCAA+AGG + chr8.3:71418747-71418766 MS.gene30308:CDS 45.0%
CTGTTGCACAAAGGATGGTT+TGG + chr8.3:71418951-71418970 MS.gene30308:CDS 45.0%
GAGGGAAGTCACAACAACAA+TGG + chr8.3:71419013-71419032 MS.gene30308:CDS 45.0%
GATGCAGACGGTTAGAAGTT+TGG + chr8.3:71419204-71419223 MS.gene30308:CDS 45.0%
GCCTTCAAATGCAGTATGGT+GGG + chr8.3:71418919-71418938 MS.gene30308:CDS 45.0%
GCTTTCCGCAAAGAATCAAG+AGG + chr8.3:71419333-71419352 MS.gene30308:CDS 45.0%
GGAAGTCACAACAACAATGG+AGG + chr8.3:71419016-71419035 MS.gene30308:CDS 45.0%
GTCTTAGATGGCGATGAGAA+TGG + chr8.3:71419163-71419182 MS.gene30308:CDS 45.0%
GTTGCACAAAGGATGGTTTG+GGG + chr8.3:71418953-71418972 MS.gene30308:CDS 45.0%
GTTTGGTTAAGGAAGGTGGT+TGG + chr8.3:71419221-71419240 MS.gene30308:CDS 45.0%
TACAATCAAGACAAGGCTGC+AGG + chr8.3:71419141-71419160 MS.gene30308:CDS 45.0%
TAGAGGATTGGGACCTAGAT+GGG + chr8.3:71419255-71419274 MS.gene30308:CDS 45.0%
TGTTGTGAGCCAAAGGTTGA+TGG + chr8.3:71418754-71418773 MS.gene30308:CDS 45.0%
! AGCACCGAGGAAGAAAAACT+TGG - chr8.3:71418399-71418418 None:intergenic 45.0%
! GGGTTTGGTACTTCGTTGAT+GGG + chr8.3:71418560-71418579 MS.gene30308:CDS 45.0%
!! AGCCAAAGGTTGATGGTTCA+AGG + chr8.3:71418761-71418780 MS.gene30308:CDS 45.0%
!! GGTTGGATGGCTTGTTATAG+AGG + chr8.3:71419238-71419257 MS.gene30308:CDS 45.0%
!!! GGAACTGCTACTGTTGGTTT+TGG + chr8.3:71418641-71418660 MS.gene30308:CDS 45.0%
!!! TTTTGGTCTTGCTGAACCGA+CGG + chr8.3:71418658-71418677 MS.gene30308:CDS 45.0%
ACAAGGCTGCAGGTCTTAGA+TGG + chr8.3:71419151-71419170 MS.gene30308:CDS 50.0%
ATGGAGGGGCTAATGTGTTG+AGG + chr8.3:71419032-71419051 MS.gene30308:CDS 50.0%
CAGAAAACAAAGCAGCACCG+AGG - chr8.3:71418412-71418431 None:intergenic 50.0%
CGCCTTCAAATGCAGTATGG+TGG + chr8.3:71418918-71418937 MS.gene30308:CDS 50.0%
CTAACCGTCTGCATCACTGT+TGG - chr8.3:71419199-71419218 None:intergenic 50.0%
CTTTAGCAGCTCAGCTTGTG+TGG + chr8.3:71418720-71418739 MS.gene30308:CDS 50.0%
GAGTAACAAGAAAGGTGGGG+AGG + chr8.3:71418994-71419013 MS.gene30308:CDS 50.0%
GCAATTGCTAATGCGGTTGC+TGG + chr8.3:71418686-71418705 MS.gene30308:CDS 50.0%
GCCCACCATACTGCATTTGA+AGG - chr8.3:71418923-71418942 None:intergenic 50.0%
GGCTGCTGCAATTGCTAATG+CGG + chr8.3:71418679-71418698 MS.gene30308:CDS 50.0%
GGTCCTAGGGGTTTGTATAG+AGG + chr8.3:71418869-71418888 MS.gene30308:CDS 50.0%
GGTTAAGGAAGGTGGTTGGA+TGG + chr8.3:71419225-71419244 MS.gene30308:CDS 50.0%
GTTGTATATGGCAGCGCTTG+AGG + chr8.3:71418601-71418620 MS.gene30308:CDS 50.0%
TCAGGGAATCAGTGCAGCAA+TGG + chr8.3:71419081-71419100 MS.gene30308:CDS 50.0%
TGAGGAAGAGGTAGAGTCAG+AGG + chr8.3:71418325-71418344 MS.gene30308:CDS 50.0%
TGGACCAACAGTGATGCAGA+CGG + chr8.3:71419192-71419211 MS.gene30308:CDS 50.0%
TGTGAGAACGGATGGTCCTA+GGG + chr8.3:71418856-71418875 MS.gene30308:CDS 50.0%
TTAGCAATTGCAGCAGCCGT+CGG - chr8.3:71418677-71418696 None:intergenic 50.0%
TTGTGAGAACGGATGGTCCT+AGG + chr8.3:71418855-71418874 MS.gene30308:CDS 50.0%
! CGGGTTTGGTACTTCGTTGA+TGG + chr8.3:71418559-71418578 MS.gene30308:CDS 50.0%
! TTCGTTGATGGGTACGATCC+CGG + chr8.3:71418571-71418590 MS.gene30308:CDS 50.0%
!! GGGTTTAGAGCGTTGTATCG+CGG + chr8.3:71418539-71418558 MS.gene30308:CDS 50.0%
!! GGTTTAGAGCGTTGTATCGC+GGG + chr8.3:71418540-71418559 MS.gene30308:CDS 50.0%
!!! CTCGGTGCTGCTTTGTTTTC+TGG + chr8.3:71418410-71418429 MS.gene30308:CDS 50.0%
AGGGGCTAATGTGTTGAGGC+CGG + chr8.3:71419036-71419055 MS.gene30308:CDS 55.0%
ATCAGTGCAGCAATGGCAGG+AGG + chr8.3:71419088-71419107 MS.gene30308:CDS 55.0%
CCATATACAACGCCCTAGCC+GGG - chr8.3:71418592-71418611 None:intergenic 55.0%
GCATCACTGTTGGTCCACGA+CGG - chr8.3:71419189-71419208 None:intergenic 55.0%
GCCATATACAACGCCCTAGC+CGG - chr8.3:71418593-71418612 None:intergenic 55.0%
GGAATCAGTGCAGCAATGGC+AGG + chr8.3:71419085-71419104 MS.gene30308:CDS 55.0%
GTGAGAACGGATGGTCCTAG+GGG + chr8.3:71418857-71418876 MS.gene30308:CDS 55.0%
! AGGATGGTTTGGGGTGGAGT+TGG + chr8.3:71418962-71418981 MS.gene30308:CDS 55.0%
! GCACAAAGGATGGTTTGGGG+TGG + chr8.3:71418956-71418975 MS.gene30308:CDS 55.0%
!! AGAGCGTTGTATCGCGGGTT+TGG + chr8.3:71418545-71418564 MS.gene30308:CDS 55.0%
!! TGCGGTTGCTGGTTTGACTG+CGG + chr8.3:71418697-71418716 MS.gene30308:CDS 55.0%
GATGGGTACGATCCCGGCTA+GGG + chr8.3:71418577-71418596 MS.gene30308:CDS 60.0%
! TGATGGGTACGATCCCGGCT+AGG + chr8.3:71418576-71418595 MS.gene30308:CDS 60.0%
!! CCCGGCTAGGGCGTTGTATA+TGG + chr8.3:71418589-71418608 MS.gene30308:CDS 60.0%
GGCGATGAGAATGGCCGTCG+TGG + chr8.3:71419172-71419191 MS.gene30308:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 71418308 71419366 71418308 ID=MS.gene30308
chr8.3 mRNA 71418308 71419366 71418308 ID=MS.gene30308.t1;Parent=MS.gene30308
chr8.3 exon 71418308 71419366 71418308 ID=MS.gene30308.t1.exon1;Parent=MS.gene30308.t1
chr8.3 CDS 71418308 71419366 71418308 ID=cds.MS.gene30308.t1;Parent=MS.gene30308.t1
Gene Sequence

>MS.gene30308

ATGGATTTGAGTGTGAATGAGGAAGAGGTAGAGTCAGAGGAAGAGATTCATGTTCCAGCTGAAATTGATTGGCAAATGCTTGATAAATCCAAGTTTTTCTTCCTCGGTGCTGCTTTGTTTTCTGGTGTTTCAGCAACATTGTATCCTGTTGTTGTGTTGAAAACTAGGCAGCAAGTTGCTCAGTCACAAGTTTCTTGTATTAAGACCGCCTTTTCGTTAATTAAAGGGGAGGGGTTTAGAGCGTTGTATCGCGGGTTTGGTACTTCGTTGATGGGTACGATCCCGGCTAGGGCGTTGTATATGGCAGCGCTTGAGGTTACCAAGAGTAATGTAGGAACTGCTACTGTTGGTTTTGGTCTTGCTGAACCGACGGCTGCTGCAATTGCTAATGCGGTTGCTGGTTTGACTGCGGCTTTAGCAGCTCAGCTTGTGTGGACGCCGATTGATGTTGTGAGCCAAAGGTTGATGGTTCAAGGTAGTTGTAATTCAAGTGATCCTAAGGGTTCGTCTGTAAGATATGTTAATGGTATTGATGCTTTTAGGAAAATTGTGAGAACGGATGGTCCTAGGGGTTTGTATAGAGGTTTTGGGATATCGGTTTTGACGTATGCGCCTTCAAATGCAGTATGGTGGGCTTCATATTCTGTTGCACAAAGGATGGTTTGGGGTGGAGTTGGATATTACTTGAGTAACAAGAAAGGTGGGGAGGGAAGTCACAACAACAATGGAGGGGCTAATGTGTTGAGGCCGGATACAAAAACTGTTATGGCAGTTCAGGGAATCAGTGCAGCAATGGCAGGAGGCATGTCTGCTTTGATTACTATGCCATTGGATACAATCAAGACAAGGCTGCAGGTCTTAGATGGCGATGAGAATGGCCGTCGTGGACCAACAGTGATGCAGACGGTTAGAAGTTTGGTTAAGGAAGGTGGTTGGATGGCTTGTTATAGAGGATTGGGACCTAGATGGGCTTCAATGTCGTTCTCTGCAACAACAATGATCACAACCTATGAGCTTTTAAAACGGCTTTCCGCAAAGAATCAAGAGGTTTTAACATGA
Protein sequence

>MS.gene30308.t1

MDLSVNEEEVESEEEIHVPAEIDWQMLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVAQSQVSCIKTAFSLIKGEGFRALYRGFGTSLMGTIPARALYMAALEVTKSNVGTATVGFGLAEPTAAAIANAVAGLTAALAAQLVWTPIDVVSQRLMVQGSCNSSDPKGSSVRYVNGIDAFRKIVRTDGPRGLYRGFGISVLTYAPSNAVWWASYSVAQRMVWGGVGYYLSNKKGGEGSHNNNGGANVLRPDTKTVMAVQGISAAMAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTVMQTVRSLVKEGGWMACYRGLGPRWASMSFSATTMITTYELLKRLSAKNQEVLT