AlfalfaGEDB | MS.gene00617

M. sativa cultivar XinJiangDaYe / MS.gene00617

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00096.29 PF13465.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00617.t1	XP_024633268.1	99.2	375	3	0	1	375	1	375	6.10E-132	480.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00617.t1	Q2V3L3	75.5	330	70	6	10	332	12	337	5.4e-60	233.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00617.t1	A0A396J0E0	99.2	375	3	0	1	375	1	375	4.4e-132	480.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene00617.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000251	MS.gene00617	PPI
MS.gene000539	MS.gene00617	PPI
MS.gene00617	MS.gene30308	PPI
MS.gene00617	MS.gene048337	PPI
MS.gene00617	MS.gene072329	PPI
MS.gene00617	MS.gene041756	PPI
MS.gene00617	MS.gene04860	PPI
MS.gene00617	MS.gene024362	PPI
MS.gene00617	MS.gene017918	PPI
MS.gene00617	MS.gene011279	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00617.t1	AT4G06634	68.407	364	99	7	10	361	12	371	6.29e-161	457
MS.gene00617.t1	AT4G06634	65.489	368	96	9	10	361	12	364	1.67e-148	425
MS.gene00617.t1	AT4G06634	65.964	332	97	7	42	361	6	333	6.75e-135	389
MS.gene00617.t1	AT3G48430	27.273	121	80	2	77	195	1243	1357	2.94e-11	65.9
MS.gene00617.t1	AT3G48430	27.273	121	80	2	77	195	884	998	3.76e-11	65.5

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Find 95 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAACTGCCTCTCTCCA+TGG	0.576594	2.1:+75795716	None:intergenic
AAACAACGAAGATGATGATG+AGG	0.613095	2.1:-75792285	MS.gene00617:CDS
AAGACATTTCTTAATTCATA+CGG	0.439731	2.1:-75795239	MS.gene00617:CDS
AAGACGTTGTTGCCACTGGT+GGG	0.637791	2.1:-75797197	MS.gene00617:CDS
AAGTACTTCAGTAGTTGGCT+CGG	0.511218	2.1:+75795810	None:intergenic
ACATGCATATGGGCGATCAG+AGG	0.622960	2.1:+75792694	None:intergenic
ACATTTCTTAATTCATACGG+GGG	0.674154	2.1:-75795236	MS.gene00617:CDS
ACCTTACCACAGCCTTCATG+AGG	0.637114	2.1:+75795196	None:intergenic
ACGCCCCTTTCTCACGTCCA+AGG	0.578019	2.1:-75797448	MS.gene00617:CDS
ACTGCCTCTCTCCATGGATG+TGG	0.516577	2.1:+75795722	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCATACTTCATGAGAC+AGG	+	chr2.1:75796658-75796677	None:intergenic	30.0%
AAACAGAATATGAAGACTGA+GGG	-	chr2.1:75797486-75797505	MS.gene00617:CDS	30.0%
AACAGAAAAATTTGACGAAG+GGG	-	chr2.1:75796485-75796504	MS.gene00617:intron	30.0%
AAGATAACTGGAAAGCAAAT+TGG	+	chr2.1:75793654-75793673	None:intergenic	30.0%
AATGATTCAAACCTTCTTTG+TGG	-	chr2.1:75795070-75795089	MS.gene00617:intron	30.0%
ACAAAAAATGGAAACTAGGA+TGG	+	chr2.1:75794252-75794271	None:intergenic	30.0%
ACATTTCTTAATTCATACGG+GGG	-	chr2.1:75794512-75794531	MS.gene00617:CDS	30.0%
ACGAAACTTACAATTTCAAG+GGG	-	chr2.1:75796577-75796596	MS.gene00617:intron	30.0%
AGCTCAATTGACAGTAAAAA+AGG	+	chr2.1:75792611-75792630	None:intergenic	30.0%
AGCTTAAACTGCATTTAAAG+AGG	-	chr2.1:75797117-75797136	MS.gene00617:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	75792265	75797505	75792265	ID=MS.gene00617
chr2.1	mRNA	75792265	75797505	75792265	ID=MS.gene00617.t1;Parent=MS.gene00617
chr2.1	exon	75797420	75797505	75797420	ID=MS.gene00617.t1.exon1;Parent=MS.gene00617.t1
chr2.1	CDS	75797420	75797505	75797420	ID=cds.MS.gene00617.t1;Parent=MS.gene00617.t1
chr2.1	exon	75797169	75797227	75797169	ID=MS.gene00617.t1.exon2;Parent=MS.gene00617.t1
chr2.1	CDS	75797169	75797227	75797169	ID=cds.MS.gene00617.t1;Parent=MS.gene00617.t1
chr2.1	exon	75795693	75795892	75795693	ID=MS.gene00617.t1.exon3;Parent=MS.gene00617.t1
chr2.1	CDS	75795693	75795892	75795693	ID=cds.MS.gene00617.t1;Parent=MS.gene00617.t1
chr2.1	exon	75795198	75795287	75795198	ID=MS.gene00617.t1.exon4;Parent=MS.gene00617.t1
chr2.1	CDS	75795198	75795287	75795198	ID=cds.MS.gene00617.t1;Parent=MS.gene00617.t1
chr2.1	exon	75794401	75794544	75794401	ID=MS.gene00617.t1.exon5;Parent=MS.gene00617.t1
chr2.1	CDS	75794401	75794544	75794401	ID=cds.MS.gene00617.t1;Parent=MS.gene00617.t1
chr2.1	exon	75792265	75792813	75792265	ID=MS.gene00617.t1.exon6;Parent=MS.gene00617.t1
chr2.1	CDS	75792265	75792813	75792265	ID=cds.MS.gene00617.t1;Parent=MS.gene00617.t1

Gene Sequence

>MS.gene00617

ATGGAGACTCACTACAACCACTCTCTCTTTGAGAGACGCCCCTTTCTCACGTCCAAGGCTCCCGCTGTTAAATGGGTCAAACAATGGTACTGCCCCTTTTCTTCATCAACTCAATTTTGCATTTTTTCCTCAATTTTTAACTCAACTTTGTCCTTGAATGAATTTCTACAGCGAAAATCCAACAAATGAACGAGAAACCAAAAAAAAAAAAATTTGAGATTTTTTTGTTAAAGTTTGTTTGGAATTTAATGTATTAATCATAGCAATGTTATTATCAGGGTTCCACAAGACGTTGTTGCCACTGGTGGGAAGTGTATGCTGTTAAGATGGGTAACAGGTTTGTCCTTTTTTACTGTCAATTGAGCTTAAATTTGAATGAGCTGAATTTGTTTCCAATAAATTAAGCACCCATAATTTTCCCTTTAGGTTATTTGTAATGTTGATTTATCATGGTTCGTATTTCTGTTGCTTATGATTGACCTATCTTTCTGATTAGACATTAGACAATAGACAACATAATTTCATAATGTTCTTCGTATGTAGATCATGTTCTTAATCAAACGATGGTTTATAATTTCCTAACTTTACAAGTATGAATTGGTACATAGCATTCTTCATGATGTTTCATAAAAACTCTACGGCAAAATTACACTTCTGGTCCTTAACTTAATATTAGATAACATTAGATAACGATTTGTTCATTTATCTTTTTTATTCCCGTCATTTTAGCCCTTTTGGCCCATTTGCATTTTTTTTTAATGGAAAATGTTACTAGTTAGATTGGTTTTTTCTCCTTCGTTCCGGTTTGAACCAGGACCTCAAACTCCTCATCCTGCTGCTCAAACAAGATGGGCTACTAACCCCCTTGATCCGTTTGCATATGAATTTTCAAGCTTCAAATCTATGGTTTTATTTTCCTGTGAGTTCTCAGTCTTCAAATCTATGGTCCTTCACCCATGTTTGCACATGAATCTTAGATTTGAAGCTTGAAAATTCATATGCAAAAGGATCAAAAGGGTTAAATTTACCAAAACAAAGTAAAGGAGCAAATTGTTATCTGAAATTAAGAGATCACGGGTGTAATTTTGCCAAACGCTGCATGTATGAATGAATTAATACTGCTGGTGCTGATGTGTCGCTTTAATAAAGTGACTATTGCCATGTCGTACTAGAACAACCTTTCATAGCACACATGAACAGTAAACCCTGACATAACTATCTCAAATACTCACACACCCCCAAAAAAATCTGTTCATAATGCTGCATTTCTAGTCTACCCTACTAAGTGGGATAAGGCTTGGTTGTGTTGGTGGTTGTTGTAATGCTTCATTTCTACGTTGGTTTATAGTTTACAATCTTTAGCATTTTTGTGTTATGTTTCTGTTACCAATTTGCTTTCCAGTTATCTTTCATAACAATCTGCAAACTCATGTATTTCTGAATGGTTTTATTGATGCAAAAAGGAACAAAGCATGTATTTTCACAGTTATAGAGCATTTGATTAGTTGAATGTTAAGCAAGCTTGGTTTGCATCCAAGCAATTATTATATTGTATGTGATTATATTCATCACGTCTTCTATATTAACAATTTTCTGTGTTTTGTTTTCTTTAGAGGATACCATAAATGCCTTGAAAGAAAAGGAAAAAGAACCATTAGCTCCTGAGCCAGAACCCGAGCCAACTACTGAAGTACTTTTTCTTTGTAGCTATGAAGGCTGTGGAAAGACATTTATAGATGCTGGTGCTTTGAGGAAGCATTCCCACATCCATGGAGAGAGGCAGTTTGTTTGCCATTATGAGGGGTGTGGAAAGGTAATGAAACTGTTTCTTCGGATTCACGCACTCACAAGCACAGAAATGCATGTTAGGCTTTAATGTTGTAACATACTTGGTTCATTGTAAATCCTTTAACAATTTTTGTGAAGCTTCATAATAATCATTTTGATTTACATAATAATGCCATGTCTTTACTCACCTATACTCCCATCCTAGTTTCCATTTTTTGTAATTTCAGGTGTATTTAGTAACACACACATGTATGCTGGTTATGTTGTATGGTTGTAACCAATAATTGCTCAAGATAGATCCTTATTAATTTTTCCATCTAGTTTCATAAAAAAGTTTCTGTCTAGCGCTGTGTCTCAATGTACAGCTCTTATGTTTGCCAAATGTCAGGTCTATTTAGAAATTACTAAGAATATTTTGTTTCTGTTGCAGAAATTTCTGGACAGCTCAAAGTTAAAAAGACATTTCTTAATTCATACGGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGTGATAAATCGATCCATTGCCCTTGTTTATTGATCTCTTAAGGTTTTCATTTTTTCGTATTTTGAATCACCTTTATGTTTGGCATATTCCATCATACCCTGAATATCAGCAAAAACTCTTCTTTTATTATCGTTCACTCTGAACCTAATTACTGATCTGTTTTTTCCTTCATTGTAATGATCAAATATTTGCGCTCTAAAGCTTCAGCAGCAAGGTAATGAGGTATATGACTATTCAGCAGTGGGTCACTTTGACTGCTGATATAGAAGATGATTAATAGATTTGGGAAATCGTCAGTTTAGAATCAATGTACAATAAATATTGTTTGGTTGATGACTGTACTGTTACTGTAAATCATCGTTTCCATGGTCACTATGGGTTTCGAATAAATGAGTTTTTCTGAATATGATTTTTTTTTTTTTTTAACTTAATAGCCCCATGATTGAATCCGATATGAAGTTAGTTCATGGCTCAATATATATGTAAGATGTATAGACAATGATTCAAACCTTCTTTGTGGTATTATTGTTTAAGGATCTTCTTCAACAAGTCAAAACCTTGCATTTGGAAAAGATAATTTTAGTATCATATTGTCTGGATTCATTTTTAATTATTCATTAGTGACTCTAAGTTTTGTTTGTGCCAATATGCAGGCCTTCTCCTTGGATTTTAACCTGAGGTCTCACATGAAGACACATTCACAAGAGAATTATCATATATGCCCATACCCAGATTGTGGGAAGAGATACGCTCATGAATACAAGCTAAAGAATCACATTGCTTCCCATCATGAAAAGGTTGGTTAATATTTCCTGTTTGTGTAACTGTGATCTATTTATATTCTATTCTAAATGGAGTAAATAGGCAATCACCCCCCCGAAATTGTAAGTTTCGTCAATTACCCCCCTGACATTAACAAAATTTCAATTACCCCCCTGAAATTGCACAACGTTAATCAATTTACCCCCTCTGTCAAATTTTTCCGTTAGTCAACATGACGTTTTGCAAATACCCCCCTGAAGTTTTGCACTTATGTGCAAAATGCCCCCTGAAATTTATAATAATCAAGCAAATTGGTCCTTGTGACAAAAAAAATATTCTTTTGCACCCAATTTTTTTTATCTTTATATGCTAATGATATCTGAATTTTTCGCAAAGGATCAAATAGGAACATCAAATGCATTAAGAAAATCTTTAAACTATATGGTGAAAGTCTTTAGCATGTAAACTTAAGAAAGAATAATTTTTATGCTGGATCTATTAACCCTGTCTGAAGTGCAATGCTTGCTCATGTAATTAGCTTTAACCTGGCTGTTATACCTTTCAAATATTTGGGAGTCCACATTTTGAAAGATAAACCTAAGATCAGTTACTTTAATGATATATGTGATGCAATTAAAGTTAAGCTTGCTACTTGGAAGGGAATTTTTCTGTCTATAATGGGTACAGTTCGACTCATCAAGTTTGTTATTCATGGCATGCTCACATTTTCTTTTTGCAATTACCTATGGCCTGTACATCTTTCGAAGCAACTTGATCAATGGTTTCCAAAATTCATATGAAGTGGATATATTTCAACTTGAATGACTCTGCTATTTTACTTCTTTGTTGGAAGCTTTTAAGTTCTAACAGTGTATTACTGAGAGATTCAAGATAATACTCTAAAGATCATTGCTATTGGTGCAAATATAAGATTTTGGACTAATAATTGGCTTGGGATTGGTGCAAATATAAGATTTTGGACTCATTGTTGCTTATGTTATAATTCTTGAGACTTCCTCACATTTGTTGCTCACTTGTTGATCATAATCATTGGGGATAAGAAAAAAAATATATAAATTTTCAAGTTCGGGGGGCATTTTGCACATAAGTGCAAAACTTCAGGGGGTATTTGCAAAACATTATGTTGACTAACAGAAAAATTTGACGAAGGGGGTAAATTGATTAACGTTGTACAATTTCAGGGGGGTAATTGAAGTTTTATTAATGTCGGGGGGGTAATTGACGAAACTTACAATTTCAAGGGGGTAATTGCCTATTTACTCATTCTAAATGTGTTCACAATCACAATAGATGGTACTACCTGTCTCATGAAGTATGATTTTAATATGTGCACTTGGTTTCCATCTAGAGGTTTCATTTGACGTGCAAAATATATACATATTTTAATACTATTTTGCAAGGTTTCTGATATCTTCGATATCTATAATCTGTTTACAATTTAAATGATGCATGACTGCACTTTTGGATGTAGATGTGCATGAATAATGTGAAGTATCACCTCAAACAATTTTTGATTGAGCACTTTTGGATGTAGATGTGCATGAATAATGTGAAGTATCACCTCAAACAATTTTTGATTGACAGTCTTAACCTCACTGCAGAGTACACCAATAGATGTGCCGATAAAGTATGCAACTCCTCCTTCAGAAAAGCAAACAAAAACTGCTAGACCTTCTGGAGCGACATACGGTTCGGCATCCTCTGATCGCCCATATGCATGTCCTTATGAAGGGTGTGAAAAGGCTTACATTCATGAGTACAAGCTTAAACTGCATTTAAAGAGGGAGCATCCTGGCCACATAAATGATGAAAATGCTATGCATGCTCTGGCTAATAATGCTGAAAATGAAATGGATGAAGCAAGTGATCACGATGCTTATGGTGGAAAACGTTCCAATGGTAAAAGTCAGAAGCAAAGCAGGCCCAAGCCAAACTTGAAAATGCCTCCTTCTAAAGTTGCTCAGCGTAAAGGGTCTACTCCAACCCCTGCCACTTTTAATATGGCTAAAAAACCTTGGCCAGTGAAAGAAGAAACTTACGATGAAGACAGCGAAGAAACTGAGGAGGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCTGGAAACAACGAAGATGATGATGAGGAAACAGAATATGAAGACTGA

Protein sequence

>MS.gene00617.t1

METHYNHSLFERRPFLTSKAPAVKWVKQWVPQDVVATGGKCMLLRWVTEDTINALKEKEKEPLAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKSTPIDVPIKYATPPSEKQTKTARPSGATYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHINDENAMHALANNAENEMDEASDHDAYGGKRSNGKSQKQSRPKPNLKMPPSKVAQRKGSTPTPATFNMAKKPWPVKEETYDEDSEETEEEDRDNVEDGWRYAGNNEDDDEETEYED