Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30383.t1 | AAZ32902.1 | 90.4 | 125 | 10 | 1 | 92 | 214 | 7 | 131 | 2.90E-55 | 225.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30383.t1 | O04348 | 65.6 | 128 | 39 | 2 | 92 | 214 | 192 | 319 | 1.2e-41 | 171.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30383.t1 | G7J5Q2 | 90.4 | 125 | 10 | 1 | 92 | 214 | 229 | 353 | 2.1e-55 | 225.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene30383 | 0.808794 | 2.60E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene30383 | 0.810003 | 1.43E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene30383 | 0.800396 | 1.47E-48 | -1.69E-46 |
| MS.gene05686 | MS.gene30383 | 0.804969 | 1.67E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30383.t1 | MTR_3g100960 | 90.400 | 125 | 10 | 1 | 92 | 214 | 229 | 353 | 6.33e-73 | 229 |
| MS.gene30383.t1 | MTR_2g059220 | 73.881 | 134 | 33 | 1 | 92 | 223 | 203 | 336 | 3.65e-62 | 200 |
| MS.gene30383.t1 | MTR_3g100960 | 93.069 | 101 | 7 | 0 | 92 | 192 | 229 | 329 | 3.35e-59 | 192 |
| MS.gene30383.t1 | MTR_8g103470 | 57.600 | 125 | 51 | 1 | 92 | 214 | 140 | 264 | 1.03e-42 | 149 |
| MS.gene30383.t1 | MTR_3g088435 | 50.427 | 117 | 54 | 2 | 92 | 206 | 69 | 183 | 1.56e-31 | 116 |
| MS.gene30383.t1 | MTR_2g078120 | 68.919 | 74 | 10 | 1 | 227 | 300 | 151 | 211 | 1.34e-23 | 100 |
| MS.gene30383.t1 | MTR_2g078120 | 93.750 | 32 | 2 | 0 | 47 | 78 | 119 | 150 | 5.73e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30383.t1 | AT2G30440 | 62.143 | 140 | 44 | 3 | 80 | 214 | 184 | 319 | 2.26e-50 | 170 |
| MS.gene30383.t1 | AT1G06870 | 63.200 | 125 | 44 | 1 | 92 | 214 | 222 | 346 | 3.05e-47 | 162 |
| MS.gene30383.t1 | AT3G24590 | 53.521 | 142 | 60 | 2 | 75 | 214 | 137 | 274 | 2.73e-46 | 158 |
| MS.gene30383.t1 | AT3G24590 | 53.521 | 142 | 60 | 2 | 75 | 214 | 156 | 293 | 4.16e-46 | 158 |
Find 59 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGATTCCTTCTGCATCTA+TGG | 0.227818 | 8.1:+78696132 | MS.gene30383:CDS |
| TAAAATTCAAGGTTCATATA+TGG | 0.270377 | 8.1:+78697401 | MS.gene30383:intron |
| GTCGTGTTCCGATTATTGTT+GGG | 0.305534 | 8.1:+78695777 | MS.gene30383:CDS |
| AATGGAGAGTATACTGCTTT+AGG | 0.324853 | 8.1:+78696926 | MS.gene30383:CDS |
| GTCGTAGTTTGTTTAGTATC+TGG | 0.356495 | 8.1:-78695443 | None:intergenic |
| TTATTGGTATCTAGATTAAT+CGG | 0.368659 | 8.1:+78697931 | MS.gene30383:intron |
| GATAACATCTCAAGCTTGTA+TGG | 0.369477 | 8.1:+78697454 | MS.gene30383:CDS |
| GGTCGTGTTCCGATTATTGT+TGG | 0.372075 | 8.1:+78695776 | MS.gene30383:CDS |
| ACGACCTGGTCCCGTAACTA+TGG | 0.373589 | 8.1:+78695461 | MS.gene30383:CDS |
| CGCTACTGGCCACCATACTA+TGG | 0.376789 | 8.1:+78697143 | MS.gene30383:CDS |
| ATTTGGCTCATGTAGGCATA+TGG | 0.382847 | 8.1:+78696432 | MS.gene30383:intron |
| GCAGAGGCTTTAGGCACATC+TGG | 0.392567 | 8.1:-78697428 | None:intergenic |
| GTTATCTCTGCAGAGGCTTT+AGG | 0.398015 | 8.1:-78697437 | None:intergenic |
| GGTTCGCGATGGGAAACTTC+TGG | 0.403263 | 8.1:+78696619 | MS.gene30383:intron |
| ACTAGTAAATCACCATAGTA+TGG | 0.413539 | 8.1:-78697155 | None:intergenic |
| GAAAGTATTACCATAGTTAC+GGG | 0.415524 | 8.1:-78695471 | None:intergenic |
| GTAGGTCCATGTTTCGCTAC+TGG | 0.432141 | 8.1:+78697129 | MS.gene30383:CDS |
| CTTCCAATCGAGAACATTGT+TGG | 0.433184 | 8.1:+78697107 | MS.gene30383:CDS |
| AGAAAGTATTACCATAGTTA+CGG | 0.436470 | 8.1:-78695472 | None:intergenic |
| TGCTTATGAGTTGGCTCCAA+TGG | 0.440182 | 8.1:+78696685 | MS.gene30383:CDS |
| TGATCGTGTTCTTATAGAAA+AGG | 0.473821 | 8.1:+78696155 | MS.gene30383:CDS |
| CAAAGCACCATCCTGGTTGA+AGG | 0.482591 | 8.1:+78696327 | MS.gene30383:CDS |
| AGAGCCTCTTGCTTATGAGT+TGG | 0.483481 | 8.1:+78696676 | MS.gene30383:CDS |
| ATCACAAAGACATGTCCCTT+TGG | 0.491623 | 8.1:-78696813 | None:intergenic |
| TCGTGTTCCGATTATTGTTG+GGG | 0.493250 | 8.1:+78695778 | MS.gene30383:CDS |
| AAAAGGGTTGTAGCTAAAGC+TGG | 0.514087 | 8.1:+78696480 | MS.gene30383:CDS |
| AAAGGGACATGTCTTTGTGA+TGG | 0.519701 | 8.1:+78696815 | MS.gene30383:CDS |
| CTACCAACAATGTTCTCGAT+TGG | 0.525439 | 8.1:-78697110 | None:intergenic |
| ATGTTTGCAGGTTGTTCCAA+AGG | 0.527320 | 8.1:+78696797 | MS.gene30383:intron |
| CTGGGAAGCTGCTGTGCAGT+TGG | 0.528040 | 8.1:+78697505 | MS.gene30383:CDS |
| TGTTTGCAGGTTGTTCCAAA+GGG | 0.532901 | 8.1:+78696798 | MS.gene30383:intron |
| AATTTACTTCAACAACACAT+TGG | 0.539164 | 8.1:+78695511 | MS.gene30383:CDS |
| TGAACTTCAAAGCACCATCC+TGG | 0.544169 | 8.1:+78696320 | MS.gene30383:CDS |
| TAGATTAATCGGAAACATGC+AGG | 0.544910 | 8.1:+78697942 | MS.gene30383:intron |
| AAGGGACATGTCTTTGTGAT+GGG | 0.552472 | 8.1:+78696816 | MS.gene30383:CDS |
| AATTACAGAGAAATGACGAC+TGG | 0.556833 | 8.1:+78697486 | MS.gene30383:CDS |
| GGAAGCTGCTGTGCAGTTGG+TGG | 0.567913 | 8.1:+78697508 | MS.gene30383:CDS |
| ACAATGTTCTCGATTGGAAG+CGG | 0.574835 | 8.1:-78697104 | None:intergenic |
| TTCACGATATCAGACACATC+AGG | 0.585468 | 8.1:-78696301 | None:intergenic |
| ATTACCATAGTTACGGGACC+AGG | 0.587388 | 8.1:-78695465 | None:intergenic |
| GCACTGGACTGTATTTAAGA+TGG | 0.588035 | 8.1:+78695801 | MS.gene30383:CDS |
| TGGTGGCCAGTAGCGAAACA+TGG | 0.589113 | 8.1:-78697135 | None:intergenic |
| CAATCGAGAACATTGTTGGT+AGG | 0.600380 | 8.1:+78697111 | MS.gene30383:CDS |
| GATGGGAAACTTCTGGTGAA+TGG | 0.606701 | 8.1:+78696626 | MS.gene30383:CDS |
| TTGAGATGTTATCTCTGCAG+AGG | 0.613063 | 8.1:-78697444 | None:intergenic |
| GTGCAGTTGGTGGTAAAAGC+AGG | 0.620539 | 8.1:+78697518 | MS.gene30383:CDS |
| AGAGCTTGTTGATGAAACAC+AGG | 0.624120 | 8.1:+78697965 | MS.gene30383:CDS |
| GGTAAAAGCAGGTGATCCAA+AGG | 0.631846 | 8.1:+78697529 | MS.gene30383:CDS |
| AAAGATACCTTCAACCAGGA+TGG | 0.635807 | 8.1:-78696334 | None:intergenic |
| GAATGGTGTTGCTGAAGATG+AGG | 0.652230 | 8.1:+78696643 | MS.gene30383:CDS |
| GGAGCCAACTCATAAGCAAG+AGG | 0.654549 | 8.1:-78696680 | None:intergenic |
| ACGATCACCATAGATGCAGA+AGG | 0.659593 | 8.1:-78696139 | None:intergenic |
| CGTGTTCCGATTATTGTTGG+GGG | 0.663047 | 8.1:+78695779 | MS.gene30383:CDS |
| ATTACAGAGAAATGACGACT+GGG | 0.664187 | 8.1:+78697487 | MS.gene30383:CDS |
| TTAAGAGCATGCTTGAGCAG+TGG | 0.671840 | 8.1:+78695408 | None:intergenic |
| AGTAAAAGATACCTTCAACC+AGG | 0.672282 | 8.1:-78696338 | None:intergenic |
| AGTAAATCACCATAGTATGG+TGG | 0.680934 | 8.1:-78697152 | None:intergenic |
| ATACTAAACAAACTACGACC+TGG | 0.683316 | 8.1:+78695447 | MS.gene30383:CDS |
| ACAAGATCTATTCTTGACAA+CGG | 0.716891 | 8.1:+78695755 | MS.gene30383:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAATGAATGAATATTA+TGG | - | chr8.1:78697877-78697896 | None:intergenic | 15.0% |
| !! | ATTTATTAGATTATTCTGTT+GGG | + | chr8.1:78695705-78695724 | MS.gene30383:intron | 15.0% |
| !! | GAGATAAAAAATTAATATCA+AGG | - | chr8.1:78697908-78697927 | None:intergenic | 15.0% |
| !! | TATTTATTAGATTATTCTGT+TGG | + | chr8.1:78695704-78695723 | MS.gene30383:intron | 15.0% |
| !!! | AATTTTTTATCTCCATTTAT+TGG | + | chr8.1:78697915-78697934 | MS.gene30383:intron | 15.0% |
| !!! | ATCTGATGTTTTTATAAAAA+GGG | + | chr8.1:78696464-78696483 | MS.gene30383:CDS | 15.0% |
| !!! | CTAGTATTTTATATTGTTTT+GGG | + | chr8.1:78696586-78696605 | MS.gene30383:intron | 15.0% |
| !!! | TCTAGTATTTTATATTGTTT+TGG | + | chr8.1:78696585-78696604 | MS.gene30383:intron | 15.0% |
| !! | ATGATGTTTATTGTTTGATT+TGG | + | chr8.1:78696415-78696434 | MS.gene30383:intron | 20.0% |
| !! | TAAAATTCAAGGTTCATATA+TGG | + | chr8.1:78697401-78697420 | MS.gene30383:intron | 20.0% |
| !! | TTAATCTAGATACCAATAAA+TGG | - | chr8.1:78697930-78697949 | None:intergenic | 20.0% |
| !! | TTATACAATAGTATAGTATC+AGG | + | chr8.1:78696030-78696049 | MS.gene30383:intron | 20.0% |
| !! | TTATTGGTATCTAGATTAAT+CGG | + | chr8.1:78697931-78697950 | MS.gene30383:intron | 20.0% |
| !!! | ATTTGTGTGTTTTTTTGTTT+AGG | + | chr8.1:78696219-78696238 | MS.gene30383:intron | 20.0% |
| !!! | CATCTGATGTTTTTATAAAA+AGG | + | chr8.1:78696463-78696482 | MS.gene30383:CDS | 20.0% |
| !!! | TATATCCAATATTTTGGTAA+AGG | - | chr8.1:78697681-78697700 | None:intergenic | 20.0% |
| !!! | TCTTTGATGTTTAAAATTCA+AGG | + | chr8.1:78697390-78697409 | MS.gene30383:intron | 20.0% |
| !!! | TGGTGTTATTATATCATAAA+TGG | + | chr8.1:78695578-78695597 | MS.gene30383:intron | 20.0% |
| ! | AATGAAATGAATGACTTCAT+CGG | - | chr8.1:78695977-78695996 | None:intergenic | 25.0% |
| ! | AATTTACTTCAACAACACAT+TGG | + | chr8.1:78695511-78695530 | MS.gene30383:CDS | 25.0% |
| ! | ACAAAGTAGGTAATTGAAAA+AGG | - | chr8.1:78695831-78695850 | None:intergenic | 25.0% |
| ! | ACTAACCTTTACCAAAATAT+TGG | + | chr8.1:78697673-78697692 | MS.gene30383:intron | 25.0% |
| ! | ATTAAATACCTCTAAGTTCT+TGG | + | chr8.1:78697644-78697663 | MS.gene30383:intron | 25.0% |
| !! | ATTTTCTGATTGTGAAATAG+TGG | + | chr8.1:78695874-78695893 | MS.gene30383:intron | 25.0% |
| !! | GAGAGTTATATCCAATATTT+TGG | - | chr8.1:78697687-78697706 | None:intergenic | 25.0% |
| !! | TAATGATATTTCTGTGGTAA+TGG | + | chr8.1:78696708-78696727 | MS.gene30383:intron | 25.0% |
| !! | TATTGATTGTGAATTCTGTT+TGG | + | chr8.1:78696740-78696759 | MS.gene30383:intron | 25.0% |
| !! | TTTGTACTTTTAATGTTTGC+AGG | + | chr8.1:78696785-78696804 | MS.gene30383:intron | 25.0% |
| !! | TTTTACATAAGCTAGAAGTT+TGG | - | chr8.1:78696990-78697009 | None:intergenic | 25.0% |
| !!! | AGAAAGTATTACCATAGTTA+CGG | - | chr8.1:78695475-78695494 | None:intergenic | 25.0% |
| !!! | AGGATGTTTTGAACTAATTA+AGG | + | chr8.1:78696239-78696258 | MS.gene30383:intron | 25.0% |
| AACATATAGCAGTGAATGAT+TGG | + | chr8.1:78697555-78697574 | MS.gene30383:intron | 30.0% | |
| AATCATTCACTGCTATATGT+TGG | - | chr8.1:78697556-78697575 | None:intergenic | 30.0% | |
| ACAAGATCTATTCTTGACAA+CGG | + | chr8.1:78695755-78695774 | MS.gene30383:CDS | 30.0% | |
| ACACTATACTACAGTGTTAA+AGG | - | chr8.1:78695663-78695682 | None:intergenic | 30.0% | |
| ACTAGTAAATCACCATAGTA+TGG | - | chr8.1:78697158-78697177 | None:intergenic | 30.0% | |
| AGATAAGCACATTTGAAAGA+TGG | - | chr8.1:78697826-78697845 | None:intergenic | 30.0% | |
| CACAGAAATATCATTACCAT+TGG | - | chr8.1:78696704-78696723 | None:intergenic | 30.0% | |
| GAGAATCAAAACTCTTGTTA+CGG | - | chr8.1:78696848-78696867 | None:intergenic | 30.0% | |
| GAGAGAAAAGTTAGTAAGAA+AGG | - | chr8.1:78696891-78696910 | None:intergenic | 30.0% | |
| GAGTATGTAGTTAACAAAGT+AGG | - | chr8.1:78695844-78695863 | None:intergenic | 30.0% | |
| GCATAGTCTAGAGATTATTA+AGG | + | chr8.1:78697589-78697608 | MS.gene30383:intron | 30.0% | |
| GTGATAATTCACTAAAACAG+TGG | - | chr8.1:78697285-78697304 | None:intergenic | 30.0% | |
| TAATTGCGTAAATAAATGCC+TGG | - | chr8.1:78697798-78697817 | None:intergenic | 30.0% | |
| TACTTATAGACCAGTTTATG+TGG | + | chr8.1:78697345-78697364 | MS.gene30383:intron | 30.0% | |
| TGATCGTGTTCTTATAGAAA+AGG | + | chr8.1:78696155-78696174 | MS.gene30383:CDS | 30.0% | |
| TGATTGACACAAAAACAACA+CGG | - | chr8.1:78697079-78697098 | None:intergenic | 30.0% | |
| TGCATAACTTACGTAATTGA+AGG | + | chr8.1:78696091-78696110 | MS.gene30383:intron | 30.0% | |
| TTGCAATAATTGAACTACTG+TGG | - | chr8.1:78696365-78696384 | None:intergenic | 30.0% | |
| ! | AAGAGAGCATAAAGAGTAAA+TGG | + | chr8.1:78695925-78695944 | MS.gene30383:intron | 30.0% |
| ! | CAATGGTAATGATATTTCTG+TGG | + | chr8.1:78696702-78696721 | MS.gene30383:intron | 30.0% |
| ! | CAATTTTGCTTTCAGAATTC+AGG | + | chr8.1:78695535-78695554 | MS.gene30383:CDS | 30.0% |
| ! | TAACTTGCGAAATAAGAAAG+TGG | - | chr8.1:78695954-78695973 | None:intergenic | 30.0% |
| ! | TACAAAGTCTTGTCAAATAG+TGG | + | chr8.1:78695558-78695577 | MS.gene30383:intron | 30.0% |
| !! | GAAAGTATTACCATAGTTAC+GGG | - | chr8.1:78695474-78695493 | None:intergenic | 30.0% |
| !!! | AGAGTTTTGATTCTCATAAC+TGG | + | chr8.1:78696853-78696872 | MS.gene30383:intron | 30.0% |
| !!! | CTTTTCTCTCTTGTTTCTAT+TGG | + | chr8.1:78696901-78696920 | MS.gene30383:intron | 30.0% |
| !!! | TGTTGTTTTTGTGTCAATCA+GGG | + | chr8.1:78697079-78697098 | MS.gene30383:intron | 30.0% |
| AATTACAGAGAAATGACGAC+TGG | + | chr8.1:78697486-78697505 | MS.gene30383:CDS | 35.0% | |
| AGTAAAAGATACCTTCAACC+AGG | - | chr8.1:78696341-78696360 | None:intergenic | 35.0% | |
| AGTAAATCACCATAGTATGG+TGG | - | chr8.1:78697155-78697174 | None:intergenic | 35.0% | |
| ATACTAAACAAACTACGACC+TGG | + | chr8.1:78695447-78695466 | MS.gene30383:CDS | 35.0% | |
| ATATTGTCAACCGCAAATTG+CGG | - | chr8.1:78695624-78695643 | None:intergenic | 35.0% | |
| ATTACAGAGAAATGACGACT+GGG | + | chr8.1:78697487-78697506 | MS.gene30383:CDS | 35.0% | |
| CAATTTGCGGTTGACAATAT+TGG | + | chr8.1:78695624-78695643 | MS.gene30383:intron | 35.0% | |
| CATCAAAGAACAGAACTCTT+AGG | - | chr8.1:78697379-78697398 | None:intergenic | 35.0% | |
| GATAACATCTCAAGCTTGTA+TGG | + | chr8.1:78697454-78697473 | MS.gene30383:CDS | 35.0% | |
| GCTTATGTAAAACATGCTCT+CGG | + | chr8.1:78696998-78697017 | MS.gene30383:intron | 35.0% | |
| GGAAAAAAGTAATGCAGACT+TGG | + | chr8.1:78696051-78696070 | MS.gene30383:intron | 35.0% | |
| GGTATATACTCCACATAAAC+TGG | - | chr8.1:78697358-78697377 | None:intergenic | 35.0% | |
| TAGATTAATCGGAAACATGC+AGG | + | chr8.1:78697942-78697961 | MS.gene30383:intron | 35.0% | |
| TGCATGAAAAAGAGAAAGAC+AGG | - | chr8.1:78697738-78697757 | None:intergenic | 35.0% | |
| TGTACAGAAGACAAACCAAT+TGG | - | chr8.1:78697223-78697242 | None:intergenic | 35.0% | |
| ! | AATGGAGAGTATACTGCTTT+AGG | + | chr8.1:78696926-78696945 | MS.gene30383:CDS | 35.0% |
| !! | CTCTTGTTTCTATTGGAGAA+TGG | + | chr8.1:78696908-78696927 | MS.gene30383:intron | 35.0% |
| !! | GTCGTAGTTTGTTTAGTATC+TGG | - | chr8.1:78695446-78695465 | None:intergenic | 35.0% |
| !! | TGAATGATTGGTACCGATTA+CGG | + | chr8.1:78697567-78697586 | MS.gene30383:intron | 35.0% |
| !! | TTGTTTGATTTGGCTCATGT+AGG | + | chr8.1:78696425-78696444 | MS.gene30383:intron | 35.0% |
| !!! | GTGTTGTTTTTGTGTCAATC+AGG | + | chr8.1:78697078-78697097 | MS.gene30383:intron | 35.0% |
| !!! | GTTGTTTTTGTGTCAATCAG+GGG | + | chr8.1:78697080-78697099 | MS.gene30383:intron | 35.0% |
| AAAAGGGTTGTAGCTAAAGC+TGG | + | chr8.1:78696480-78696499 | MS.gene30383:CDS | 40.0% | |
| AAACAACACGGATGTTAGTC+AGG | - | chr8.1:78697067-78697086 | None:intergenic | 40.0% | |
| AAAGATACCTTCAACCAGGA+TGG | - | chr8.1:78696337-78696356 | None:intergenic | 40.0% | |
| AAAGGGACATGTCTTTGTGA+TGG | + | chr8.1:78696815-78696834 | MS.gene30383:CDS | 40.0% | |
| AAGAGAAAGACAGGCAAGAA+AGG | - | chr8.1:78697729-78697748 | None:intergenic | 40.0% | |
| AAGGGACATGTCTTTGTGAT+GGG | + | chr8.1:78696816-78696835 | MS.gene30383:CDS | 40.0% | |
| AATACCTCTAAGTTCTTGGC+TGG | + | chr8.1:78697648-78697667 | MS.gene30383:intron | 40.0% | |
| AATGACAAACCCGCAATTTG+CGG | + | chr8.1:78695611-78695630 | MS.gene30383:intron | 40.0% | |
| ACAATGTTCTCGATTGGAAG+CGG | - | chr8.1:78697107-78697126 | None:intergenic | 40.0% | |
| ACACACTCAATTACATTGCC+AGG | + | chr8.1:78697777-78697796 | MS.gene30383:intron | 40.0% | |
| ACTGCTATATGTTGGACCTT+TGG | - | chr8.1:78697548-78697567 | None:intergenic | 40.0% | |
| ATCACAAAGACATGTCCCTT+TGG | - | chr8.1:78696816-78696835 | None:intergenic | 40.0% | |
| ATGTTTGCAGGTTGTTCCAA+AGG | + | chr8.1:78696797-78696816 | MS.gene30383:intron | 40.0% | |
| CAATCGAGAACATTGTTGGT+AGG | + | chr8.1:78697111-78697130 | MS.gene30383:CDS | 40.0% | |
| CTACCAACAATGTTCTCGAT+TGG | - | chr8.1:78697113-78697132 | None:intergenic | 40.0% | |
| CTTCCAATCGAGAACATTGT+TGG | + | chr8.1:78697107-78697126 | MS.gene30383:CDS | 40.0% | |
| GCACTGGACTGTATTTAAGA+TGG | + | chr8.1:78695801-78695820 | MS.gene30383:CDS | 40.0% | |
| GGAGAACAGCATCAACAAAT+AGG | - | chr8.1:78696969-78696988 | None:intergenic | 40.0% | |
| GTCGTGTTCCGATTATTGTT+GGG | + | chr8.1:78695777-78695796 | MS.gene30383:CDS | 40.0% | |
| TATTGTCAACCGCAAATTGC+GGG | - | chr8.1:78695623-78695642 | None:intergenic | 40.0% | |
| TCGTGTTCCGATTATTGTTG+GGG | + | chr8.1:78695778-78695797 | MS.gene30383:CDS | 40.0% | |
| TCTCTAGACTATGCCGTAAT+CGG | - | chr8.1:78697583-78697602 | None:intergenic | 40.0% | |
| TGTTTGCAGGTTGTTCCAAA+GGG | + | chr8.1:78696798-78696817 | MS.gene30383:intron | 40.0% | |
| TTCACGATATCAGACACATC+AGG | - | chr8.1:78696304-78696323 | None:intergenic | 40.0% | |
| TTGAGATGTTATCTCTGCAG+AGG | - | chr8.1:78697447-78697466 | None:intergenic | 40.0% | |
| ! | AAGTAATGCAGACTTGGTTC+TGG | + | chr8.1:78696057-78696076 | MS.gene30383:intron | 40.0% |
| ! | AATACACGATCTGAAGCTAG+AGG | + | chr8.1:78697196-78697215 | MS.gene30383:intron | 40.0% |
| ! | ATTTGGCTCATGTAGGCATA+TGG | + | chr8.1:78696432-78696451 | MS.gene30383:intron | 40.0% |
| ! | GAGAGTATACTGCTTTAGGT+GGG | + | chr8.1:78696930-78696949 | MS.gene30383:intron | 40.0% |
| ! | TTTAGGTGGGTGATACGTTT+TGG | + | chr8.1:78696943-78696962 | MS.gene30383:intron | 40.0% |
| !! | AGAGCTTGTTGATGAAACAC+AGG | + | chr8.1:78697965-78697984 | MS.gene30383:CDS | 40.0% |
| !!! | ATTGTTTTGGGTTTTGTCGC+AGG | + | chr8.1:78696598-78696617 | MS.gene30383:intron | 40.0% |
| ACGATCACCATAGATGCAGA+AGG | - | chr8.1:78696142-78696161 | None:intergenic | 45.0% | |
| AGAGCCTCTTGCTTATGAGT+TGG | + | chr8.1:78696676-78696695 | MS.gene30383:CDS | 45.0% | |
| ATTACCATAGTTACGGGACC+AGG | - | chr8.1:78695468-78695487 | None:intergenic | 45.0% | |
| CGTGTTCCGATTATTGTTGG+GGG | + | chr8.1:78695779-78695798 | MS.gene30383:CDS | 45.0% | |
| CTCGATTCCTTCTGCATCTA+TGG | + | chr8.1:78696132-78696151 | MS.gene30383:CDS | 45.0% | |
| GATGGGAAACTTCTGGTGAA+TGG | + | chr8.1:78696626-78696645 | MS.gene30383:CDS | 45.0% | |
| GGTAAAAGCAGGTGATCCAA+AGG | + | chr8.1:78697529-78697548 | MS.gene30383:CDS | 45.0% | |
| GGTCGTGTTCCGATTATTGT+TGG | + | chr8.1:78695776-78695795 | MS.gene30383:CDS | 45.0% | |
| GTATCCAGCCAAGAACTTAG+AGG | - | chr8.1:78697655-78697674 | None:intergenic | 45.0% | |
| GTTATCTCTGCAGAGGCTTT+AGG | - | chr8.1:78697440-78697459 | None:intergenic | 45.0% | |
| ! | GGAGAGTATACTGCTTTAGG+TGG | + | chr8.1:78696929-78696948 | MS.gene30383:intron | 45.0% |
| ! | TCTGAAGCTAGAGGTCCAAT+TGG | + | chr8.1:78697205-78697224 | MS.gene30383:intron | 45.0% |
| ! | TGAACTTCAAAGCACCATCC+TGG | + | chr8.1:78696320-78696339 | MS.gene30383:CDS | 45.0% |
| ! | TGCTTATGAGTTGGCTCCAA+TGG | + | chr8.1:78696685-78696704 | MS.gene30383:CDS | 45.0% |
| !! | GAATGGTGTTGCTGAAGATG+AGG | + | chr8.1:78696643-78696662 | MS.gene30383:CDS | 45.0% |
| CCAGTGCCCCCAACAATAAT+CGG | - | chr8.1:78695788-78695807 | None:intergenic | 50.0% | |
| GGAGCCAACTCATAAGCAAG+AGG | - | chr8.1:78696683-78696702 | None:intergenic | 50.0% | |
| GTAGGTCCATGTTTCGCTAC+TGG | + | chr8.1:78697129-78697148 | MS.gene30383:CDS | 50.0% | |
| ! | CAAAGCACCATCCTGGTTGA+AGG | + | chr8.1:78696327-78696346 | MS.gene30383:CDS | 50.0% |
| ! | TTTTGTCGCAGGTTCGCGAT+GGG | + | chr8.1:78696609-78696628 | MS.gene30383:intron | 50.0% |
| !! | GTGCAGTTGGTGGTAAAAGC+AGG | + | chr8.1:78697518-78697537 | MS.gene30383:CDS | 50.0% |
| ACGACCTGGTCCCGTAACTA+TGG | + | chr8.1:78695461-78695480 | MS.gene30383:CDS | 55.0% | |
| CGCTACTGGCCACCATACTA+TGG | + | chr8.1:78697143-78697162 | MS.gene30383:CDS | 55.0% | |
| GGTTCGCGATGGGAAACTTC+TGG | + | chr8.1:78696619-78696638 | MS.gene30383:intron | 55.0% | |
| TGGTGGCCAGTAGCGAAACA+TGG | - | chr8.1:78697138-78697157 | None:intergenic | 55.0% | |
| ! | CCGATTATTGTTGGGGGCAC+TGG | + | chr8.1:78695785-78695804 | MS.gene30383:CDS | 55.0% |
| ! | GTTTTGTCGCAGGTTCGCGA+TGG | + | chr8.1:78696608-78696627 | MS.gene30383:intron | 55.0% |
| !! | GCAGAGGCTTTAGGCACATC+TGG | - | chr8.1:78697431-78697450 | None:intergenic | 55.0% |
| CTGGGAAGCTGCTGTGCAGT+TGG | + | chr8.1:78697505-78697524 | MS.gene30383:CDS | 60.0% | |
| GGAAGCTGCTGTGCAGTTGG+TGG | + | chr8.1:78697508-78697527 | MS.gene30383:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 78695416 | 78698034 | 78695416 | ID=MS.gene30383 |
| chr8.1 | mRNA | 78695416 | 78698034 | 78695416 | ID=MS.gene30383.t1;Parent=MS.gene30383 |
| chr8.1 | exon | 78695416 | 78695556 | 78695416 | ID=MS.gene30383.t1.exon1;Parent=MS.gene30383.t1 |
| chr8.1 | CDS | 78695416 | 78695556 | 78695416 | ID=cds.MS.gene30383.t1;Parent=MS.gene30383.t1 |
| chr8.1 | exon | 78695731 | 78695822 | 78695731 | ID=MS.gene30383.t1.exon2;Parent=MS.gene30383.t1 |
| chr8.1 | CDS | 78695731 | 78695822 | 78695731 | ID=cds.MS.gene30383.t1;Parent=MS.gene30383.t1 |
| chr8.1 | exon | 78696113 | 78696176 | 78696113 | ID=MS.gene30383.t1.exon3;Parent=MS.gene30383.t1 |
| chr8.1 | CDS | 78696113 | 78696176 | 78696113 | ID=cds.MS.gene30383.t1;Parent=MS.gene30383.t1 |
| chr8.1 | exon | 78696280 | 78696348 | 78696280 | ID=MS.gene30383.t1.exon4;Parent=MS.gene30383.t1 |
| chr8.1 | CDS | 78696280 | 78696348 | 78696280 | ID=cds.MS.gene30383.t1;Parent=MS.gene30383.t1 |
| chr8.1 | exon | 78696447 | 78696515 | 78696447 | ID=MS.gene30383.t1.exon5;Parent=MS.gene30383.t1 |
| chr8.1 | CDS | 78696447 | 78696515 | 78696447 | ID=cds.MS.gene30383.t1;Parent=MS.gene30383.t1 |
| chr8.1 | exon | 78696620 | 78696706 | 78696620 | ID=MS.gene30383.t1.exon6;Parent=MS.gene30383.t1 |
| chr8.1 | CDS | 78696620 | 78696706 | 78696620 | ID=cds.MS.gene30383.t1;Parent=MS.gene30383.t1 |
| chr8.1 | exon | 78696807 | 78696846 | 78696807 | ID=MS.gene30383.t1.exon7;Parent=MS.gene30383.t1 |
| chr8.1 | CDS | 78696807 | 78696846 | 78696807 | ID=cds.MS.gene30383.t1;Parent=MS.gene30383.t1 |
| chr8.1 | exon | 78696926 | 78696947 | 78696926 | ID=MS.gene30383.t1.exon8;Parent=MS.gene30383.t1 |
| chr8.1 | CDS | 78696926 | 78696947 | 78696926 | ID=cds.MS.gene30383.t1;Parent=MS.gene30383.t1 |
| chr8.1 | exon | 78697100 | 78697192 | 78697100 | ID=MS.gene30383.t1.exon9;Parent=MS.gene30383.t1 |
| chr8.1 | CDS | 78697100 | 78697192 | 78697100 | ID=cds.MS.gene30383.t1;Parent=MS.gene30383.t1 |
| chr8.1 | exon | 78697412 | 78697550 | 78697412 | ID=MS.gene30383.t1.exon10;Parent=MS.gene30383.t1 |
| chr8.1 | CDS | 78697412 | 78697550 | 78697412 | ID=cds.MS.gene30383.t1;Parent=MS.gene30383.t1 |
| chr8.1 | exon | 78697945 | 78698034 | 78697945 | ID=MS.gene30383.t1.exon11;Parent=MS.gene30383.t1 |
| chr8.1 | CDS | 78697945 | 78698034 | 78697945 | ID=cds.MS.gene30383.t1;Parent=MS.gene30383.t1 |
| Gene Sequence |
| Protein sequence |
