AlfalfaGEDB | MS.gene30775

M. sativa cultivar XinJiangDaYe / MS.gene30775

KEGG: K11426
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00856.31 PF01753.21 PF13424.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30775.t1	XP_003601097.2	90.2	470	23	1	1	447	1	470	3.00E-242	847.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30775.t1	Q7XJS0	64.2	441	154	1	12	448	35	475	6.5e-169	595.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30775.t1	G7J3L4	90.2	470	23	1	1	447	1	470	2.2e-242	847.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene30775.t1	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050787	MS.gene30775	0.807917	4.00E-50	-1.69E-46
MS.gene054468	MS.gene30775	0.806299	8.80E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30775.t1	MTR_3g073000	90.213	470	23	1	1	447	1	470	0.0	869
MS.gene30775.t1	MTR_3g073000	82.979	470	22	2	1	447	1	435	0.0	783
MS.gene30775.t1	MTR_3g073000	87.629	388	25	1	1	365	1	388	0.0	696
MS.gene30775.t1	MTR_3g093440	28.205	156	95	4	159	312	459	599	1.15e-11	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30775.t1	AT2G17900	64.172	441	154	1	12	448	40	480	0.0	611

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Find 80 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACACTGAATTGGGT+AGG	0.637837	3.1:+59763395	None:intergenic
AAAGGATACAAAACCTGACA+TGG	0.639706	3.1:+59764551	None:intergenic
AAGCACTGTGACTCGACAAA+AGG	0.521126	3.1:-59762649	MS.gene30775:CDS
AAGGAAATTGCAAGATGACA+AGG	0.615659	3.1:-59764214	MS.gene30775:intron
AAGTACCACTTTAGAACAGA+GGG	0.532968	3.1:+59762590	None:intergenic
AAGTTTGAGCATCAACCGTA+TGG	0.550663	3.1:+59764245	None:intergenic
AATATTGCAAGCCAAGCAAA+GGG	0.578542	3.1:+59760298	None:intergenic
AATCTGTTACACCATCCATA+CGG	0.635943	3.1:-59764260	MS.gene30775:CDS
ACATGTGCCTAAAGGGACTG+AGG	0.674349	3.1:-59763338	MS.gene30775:intron
AGACATGTCTGACATCAAAG+AGG	0.653286	3.1:-59763805	MS.gene30775:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTCTCCAATACATTGA+TGG	+	chr3.1:59764153-59764172	None:intergenic	30.0%
AACGAACTGAATATTGCAAA+TGG	+	chr3.1:59761261-59761280	None:intergenic	30.0%
AAGTTCATATCAATCATCCA+TGG	+	chr3.1:59760531-59760550	None:intergenic	30.0%
AATCCACAATGAAAAGGTTA+AGG	-	chr3.1:59763623-59763642	MS.gene30775:intron	30.0%
ACACACAAATGTAATATGCA+GGG	+	chr3.1:59764381-59764400	None:intergenic	30.0%
AGCAAGTATTAAACTTGATG+TGG	+	chr3.1:59761819-59761838	None:intergenic	30.0%
AGCTATTAAATCATTGACCA+AGG	-	chr3.1:59764760-59764779	MS.gene30775:intron	30.0%
ATAAGTTATATAGAGACAGC+TGG	-	chr3.1:59761865-59761884	MS.gene30775:CDS	30.0%
ATACTTGTGGAAAACTTGAA+TGG	-	chr3.1:59764262-59764281	MS.gene30775:CDS	30.0%
ATATCAAATGCGCTACTTAA+CGG	+	chr3.1:59762914-59762933	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	59759658	59764901	59759658	ID=MS.gene30775
chr3.1	mRNA	59759658	59764901	59759658	ID=MS.gene30775.t1;Parent=MS.gene30775
chr3.1	exon	59764871	59764901	59764871	ID=MS.gene30775.t1.exon1;Parent=MS.gene30775.t1
chr3.1	CDS	59764871	59764901	59764871	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59764565	59764698	59764565	ID=MS.gene30775.t1.exon2;Parent=MS.gene30775.t1
chr3.1	CDS	59764565	59764698	59764565	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59764215	59764349	59764215	ID=MS.gene30775.t1.exon3;Parent=MS.gene30775.t1
chr3.1	CDS	59764215	59764349	59764215	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59763912	59763966	59763912	ID=MS.gene30775.t1.exon4;Parent=MS.gene30775.t1
chr3.1	CDS	59763912	59763966	59763912	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59763707	59763825	59763707	ID=MS.gene30775.t1.exon5;Parent=MS.gene30775.t1
chr3.1	CDS	59763707	59763825	59763707	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59763510	59763598	59763510	ID=MS.gene30775.t1.exon6;Parent=MS.gene30775.t1
chr3.1	CDS	59763510	59763598	59763510	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59763339	59763420	59763339	ID=MS.gene30775.t1.exon7;Parent=MS.gene30775.t1
chr3.1	CDS	59763339	59763420	59763339	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59762596	59762700	59762596	ID=MS.gene30775.t1.exon8;Parent=MS.gene30775.t1
chr3.1	CDS	59762596	59762700	59762596	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59762393	59762483	59762393	ID=MS.gene30775.t1.exon9;Parent=MS.gene30775.t1
chr3.1	CDS	59762393	59762483	59762393	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59762119	59762238	59762119	ID=MS.gene30775.t1.exon10;Parent=MS.gene30775.t1
chr3.1	CDS	59762119	59762238	59762119	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59761836	59761942	59761836	ID=MS.gene30775.t1.exon11;Parent=MS.gene30775.t1
chr3.1	CDS	59761836	59761942	59761836	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59761159	59761228	59761159	ID=MS.gene30775.t1.exon12;Parent=MS.gene30775.t1
chr3.1	CDS	59761159	59761228	59761159	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59760276	59760339	59760276	ID=MS.gene30775.t1.exon13;Parent=MS.gene30775.t1
chr3.1	CDS	59760276	59760339	59760276	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1
chr3.1	exon	59759658	59759820	59759658	ID=MS.gene30775.t1.exon14;Parent=MS.gene30775.t1
chr3.1	CDS	59759658	59759820	59759658	ID=cds.MS.gene30775.t1;Parent=MS.gene30775.t1

Gene Sequence

>MS.gene30775

ATGGAGGAATTGCAACAAGCACTGAAGAATTGTAATTTAACAGTTTCCACCATCTCAGAAAAGGGTCGCTCTCTTTTTACTACTAGAGATTTCCACCCAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAACTAGTTTGAATGAAAACGAAACACCAATGCTATAGAATGAATGATGTTTTTACTTTGGTGTTGCATTGCAGGGGAAGTGATTATTAGCCAAGAGCCCTATGTTTGTGTTCCAACTCAAAAAAGGTGTGATGGATGTTTCTCAACAACTAACCTTAGCAAATGCTCACGTTGTCAAGTTGTTTGGTATTGCGGAACACCATGTCAGGTTTTGTATCCTTTCTTATCATAAGTGTTGTCGGCGTCCAACATGTGTCGGACACAAGACATGCCTTTTATCATAAGTGTCAATGTTACCAGGGAATGTAACAATGATAGAAGCACAAGGAGTGTTGGTTTACATAACACAGCATAGATAGTAGAACAATAAAATTGATATGATATGATATGATATGTTATTGTGGTTCTTTTGATGATATTCAGAAATCGGAGTGGAAGTTGCATCGTCTTGAATGTCAAGCACTCTCAAGGCTAGACAACCATAAGAGAAAATCTGTTACACCATCCATACGGTTGATGCTCAAACTTTATCTTCGAAGGAAATTGCAAGATGACAAGGTAAATGTGAACAAAATTTAGTTTTGGTTAATGCATTGGTGCTATGCTGCTATTTAAGTTAGAAAATCAATATTTGCAATGTTTTACTTTTGACTTCATAAAATTGCATTTGAGGGATTATTATCTTAAAGTTCTTTTTGAGGCTTCAAAATTTTTCTTGTGTATTTAGAAAGCTTTTTACAACCATGGATGATTGATATGAACTTTGAACAGTCATGAAAGAATTTTAATATTAATTTTATTTGCAGATCATTCCAAGCACTGCTATGGACAACTACAAGTTAGTGGACGCATTAGTGGCTCGTATCCTTTTTAAGCTTTACTGTATTTTTCTCCGTTTTCAACATGTATGTGGTGAATGTTCTTTTTTAACTATCAATTCCATCAAGACATGTCTGACATCAAAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTGCAATGGCCTGAAATCAATATTAAAGAGATTGCAGAATTTTTTTCCAAGGTTTTATGCTTCCAATCTTAAATTAGTTGATATAACGCTCATCAGTTGTTCTCATTTGAAATCACACACAGCGCACTCAATGTTATGATGATCTCTTTGTTCCTGCAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTAAGACCTCTGGGAACAGGATTGTATCCTGTTGTTTCCATTATCAATCACAGGTAACCACTTAACTTATTTTTTGTTCCGAAAATAATGTCTTACTATACTGTTTCTTTTTTATTCTTCTGATTGTGATTTTACCATATAGCTGCCTACCCAATTCAGTGTTGGTTTTTGAAGGAAGGGTAGCATCGGTACGTGCTGTGCAACATGTGCCTAAAGGGACTGAGGTATCTATTTTGTTTCTTCTTGCGTAAGTAGAAATTACCATTTGCAATATTCAGTTCGTTTGTTTACAGGGCAAGAGATGTCATTTAAAGATTATTAATGGAAACTCAGCAAAATTTAGGCATAGTGTTAGGAGTTAACCATATTGTTTCATAATTGTAGGATTTTCCATTGTGAATTCCAGGGTTTCTTTGAATTTGAAAGTTATGTCTTGTCGTGTAGCTTGTTCTATATATCTACAAGCATAGGTTCTCATGATTAGCTTCATATATTTTGTGTAAACTCAATCTCGCTTTACACTAAGATATCTCCACTTTGAACTGGGACCTCTTTGGGGAACGGCTATAATGACCTCTTTGAGGATATAAGTGGAAGTCGAACTACTAGAGGTGCAATTCTGCCTCTACAAATTTGTGGAAAACTAGTATATATAGCATTTGTATGCCAATTTCGGCCAAAACTAGGCAGTTGCAACTTTCTTTTTTGTAAAAGTTTCAGTTAGGGTACATCTCATATCCAATAGGTGATGATAGTTGTCATTAATTAATTTAAAACTATTTGACGGATGGTGTGTTACATTACATCTTTATTTTTTTTCCACATCAAGTTTAATACTTGCTATTTTATATAATTTTTTAAGGTATTGATAAGTTATATAGAGACAGCTGGAAGCACTGTGACTCGACAAAAGGCTCTCAGAGAGCAGTACCTATTCACTTGTGTTTGTCCCCTCTGTTCTAAAGTGGTACTTACTATATCACTTAATCTGAAATATTTTCTTGTTGGCTTCACATCATAGTAATTTCAGTAAAATTGGAATGTTATCATTGGCTAATTCAGTTAAGTTAGTTTTGAAGGGTCAGTATGAAGATGTTCGAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTCCGCACAACTGGTATGACCTAAAAGGAACATCATAATCTTTTACTGGCTATGAGTTTTGTAGTCTGATGGAATCCTCTCCTTTTTATAAATATAAGACTGAGATAAAAAAAATAAATGGTCCACCAAGTGTTACTGACACTCTTTTTTTTGTTTTTAAATTATAGATGGAAAAGCGTTTCAATGCCAAGAATGTGGGTTAGTAAGAGACAAGGAAGAGATAAAGCAAATTGCAACTGAAATAAAATTTCTATCAGAAGAAGCTTCTAAGCCTTCTTCTAGTGGCAGTATCCTTTAACATTTCTGACTAGAACTGGATACTGTAATTGCTATCGCCTTGACAATTTTCCTTTTGCATTCCAATCTTTTTTCTTTCTTATCCTTTAATGGAGCCTTGATCCATGTTCAAAGGAAATTGATTTGCAGTTTATGTCCATGAAGTCAAATCCTTAACTATATGTAGATTATCATGAAGCTATTTCCATATATAAAATGATCGAGAAACTGCAAACAAAACTATATCACCCTTTCTCGATCAATTTGATGCAAACACGAGAGGCGATTTTGAAGGTAAGCTTGTCCTTGCAGTTCTCTATCTACTATTGTTATTATTTTCTGATTAATATATATTGTTTGATAATATCAAGTACAACCTTTCCATGCATGTTTTACCTAGTACAACTCCTTTGAGATTCGTATAGTGCAACGTTTATCTTTTTTGTTTCTTTTCAGTACATAGTACAAACCAAATCTTTTGCCGTTAAGTAGCGCATTTGATATATTATATACTAATGAATAGATATACGGATTGGTTTATATTCTACTTTGGATGATCCTGCAACCGGTCATATTTCCTCAGTTTTCATCATTACACATCTTATTTCTTTATTGATTTTCTGCGTATTAGAAAACTCTTAGACATGTATCAATTAAAAAGCTTATCCCCAGTACAGTGAGTTTGGCATCTAGCCACCCTTTTCTATATATGTATGTGTGTGTGTGTGTATATATATATTGCGATTAAAATTAAAATTAAAAAGCTCTACTTGTTTTCTGCTGTTTCAAATCGTTACATCAAAGGCACTTGGAAACGATGAAGTGTATAGCCCATTTATGCAATAATTGATTTTCAACTGTGAATTAATGAATCTAAAGACCTGATATTTTACCTTTGCAGTCATTAATGAAGCTGGAGTATTGGATAGAAGCTTTAGCATATTGCAAATTGACCATACCAATCTATCAAAGTATGCCATCGCAAACTTCTATACTCAATAAACGACACAGTTAAAAGCTTCCGTAGCATTGATTCCGTTGGTAGTTTCAGTTGTTGCTTTCATTTCGAAGTTTTCTATCTTGCTTTTCAAATATTTGCTAGTTTTGCTTTTTCCTGGTCGCATTAGAAAAATGAAAATTACTAATTTTAGCAAAAATCATGTAAGGTATTGTTGTGGAGGTAAAGAAGATTAAATCCACAATGAAAAGGTTAAGGTTGCAAGTTAGGTGTTTACTGAACATCCCAGAACGTTTCAAATACATCAGTGCTATGCATATTTTGATACGATGTCACACAGAATTATATTTTTAGGGGGGAAAGAATAAACAGATGGAGGAATGATGGGCAATGAAGTCTTAGAACACAGACACCTTCCTACCTTTGTCACGCATTTCTCTGCACATTATGTGTTCTAAAAGTGTAGCTGCAGTTTCCTTCAATAATTTACATTGAATCTTGAATCCTGTGTTTAATCAATCAAAAGTGGCTTTAAGTTGTGAATTTTTACTACCATCTTAGTCGGGTCACCCAAAAATTATGGAAAGTTATGCCAGACATGAATTTATGATTATGCTGTCTTAAATTTGTTTCATAGATGGTCTAAAAGCTATGTTCTCAAAAATATTAGTACTAAATCGAAACCCAATTTAGTCATCTTGTAGTATTGATAATCTGCTACCTCTGAATAGCTATTCATTGTGTTTTGTGTACCGAAACTTACCATCAATGTATTGGAGAAGTTTCACAAATGATGCTGACATGCAATGCTGGATGTTTTACTTCATTGCAGGAGTGTATCCAGCTGTTCACCCTTTGCTTGGCTTGCAATATTATACTTGTGGAAAACTTGAATGGTTAGCATCTTTCAACTGAAGCTCGTATATATTCAATGTGAATATTAAATTCTTCTACTAATAATGCATCTATGAGGATATATATGCTTCTCTCCCCTGCATATTACATTTGTGTGTGTCTGTATCTATACAAATGATCTACATGCATCACATTCAAACAAGGAGATTGAACATCTAGATTTATGTATACACATCATTAAAAAAGTTAACCTTTCTTAGCTAGTTGTGATGGTCAAACTATTATAATTATAATTATATGATAATATATGACTGAAAAATAAATAATTCAAACATATTTACACCAGCAATTTATCAATAGTAATATCCGTATGTAAACAAAACAGAGTTAATTTGTACTTCGAGTTTAGTAGTTGTAAGTCCATGTAACCAATGTCACCTAGTAGAAAAAGAAGAGTTATATTTTATGTTGTTTGAGTTTAATGATCTTGATATAGGTATCTTGGAGACACAGAGGAAGCTATTAAATCATTGACCAAGGCAGTGGATATACTAAGGATTACTCATGGTACAAAGACTCCATTAGTGAAGGAACTATTGATGATGTTGGAGGAAGCCCGTGCAGAAGCCTCTTACAAATTGTCATCAAAAGAAGAGTAG

Protein sequence

>MS.gene30775.t1

MEELQQALKNWEVIISQEPYVCVPTQKRCDGCFSTTNLSKCSRCQVVWYCGTPCQKSEWKLHRLECQALSRLDNHKRKSVTPSIRLMLKLYLRRKLQDDKIIPSTAMDNYKLVDALVAHMSDIKEEQLVLYAQMANLVHLILQWPEINIKEIAEFFSKFACNAHTICDSELRPLGTGLYPVVSIINHSCLPNSVLVFEGRVASVRAVQHVPKGTEVLISYIETAGSTVTRQKALREQYLFTCVCPLCSKVGQYEDVRENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKFLSEEASKPSSSGNYHEAISIYKMIEKLQTKLYHPFSINLMQTREAILKSLMKLEYWIEALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEEAIKSLTKAVDILRITHGTKTPLVKELLMMLEEARAEASYKLSSKEE