Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30894.t1 | XP_024634476.1 | 96.6 | 266 | 9 | 0 | 122 | 387 | 33 | 298 | 1.80E-142 | 515.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30894.t1 | Q8RWU3 | 65.6 | 270 | 84 | 4 | 122 | 383 | 29 | 297 | 1.6e-91 | 337.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30894.t1 | A0A072VW35 | 96.6 | 266 | 9 | 0 | 122 | 387 | 33 | 298 | 1.3e-142 | 515.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene30894.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050702 | MS.gene30894 | 0.830857 | 2.32E-55 | -1.69E-46 |
MS.gene061218 | MS.gene30894 | 0.801055 | 1.08E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30894.t1 | MTR_1g067000 | 95.960 | 297 | 12 | 0 | 91 | 387 | 2 | 298 | 0.0 | 589 |
MS.gene30894.t1 | MTR_0123s0070 | 54.275 | 269 | 109 | 5 | 106 | 364 | 18 | 282 | 4.13e-86 | 264 |
MS.gene30894.t1 | MTR_0123s0070 | 54.826 | 259 | 103 | 5 | 106 | 354 | 18 | 272 | 1.72e-83 | 256 |
MS.gene30894.t1 | MTR_8g028655 | 52.308 | 260 | 108 | 4 | 124 | 368 | 52 | 310 | 1.83e-82 | 255 |
MS.gene30894.t1 | MTR_4g108770 | 64.894 | 94 | 23 | 2 | 1 | 93 | 1 | 85 | 4.57e-27 | 104 |
MS.gene30894.t1 | MTR_6g477860 | 56.250 | 112 | 38 | 2 | 117 | 217 | 38 | 149 | 2.09e-25 | 107 |
MS.gene30894.t1 | MTR_3g064500 | 57.143 | 98 | 34 | 1 | 125 | 214 | 46 | 143 | 3.76e-25 | 105 |
MS.gene30894.t1 | MTR_5g076960 | 55.856 | 111 | 36 | 3 | 117 | 219 | 24 | 129 | 3.57e-24 | 103 |
MS.gene30894.t1 | MTR_7g099240 | 56.522 | 92 | 36 | 2 | 7 | 94 | 33 | 124 | 7.02e-24 | 99.8 |
MS.gene30894.t1 | MTR_7g118330 | 57.143 | 70 | 30 | 0 | 117 | 186 | 7 | 76 | 6.06e-22 | 98.2 |
MS.gene30894.t1 | MTR_3g062480 | 56.897 | 58 | 11 | 1 | 1 | 58 | 1 | 44 | 1.43e-13 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30894.t1 | AT3G09600 | 67.050 | 261 | 79 | 3 | 110 | 364 | 17 | 276 | 5.86e-124 | 360 |
MS.gene30894.t1 | AT3G09600 | 67.050 | 261 | 79 | 3 | 110 | 364 | 17 | 276 | 5.86e-124 | 360 |
MS.gene30894.t1 | AT3G09600 | 66.171 | 269 | 78 | 4 | 110 | 372 | 17 | 278 | 2.15e-121 | 353 |
MS.gene30894.t1 | AT3G09600 | 66.171 | 269 | 78 | 4 | 110 | 372 | 17 | 278 | 2.15e-121 | 353 |
MS.gene30894.t1 | AT3G09600 | 68.526 | 251 | 72 | 3 | 110 | 354 | 17 | 266 | 4.77e-121 | 352 |
MS.gene30894.t1 | AT5G02840 | 64.706 | 255 | 77 | 4 | 119 | 362 | 31 | 283 | 1.20e-110 | 325 |
MS.gene30894.t1 | AT5G02840 | 63.178 | 258 | 82 | 4 | 119 | 365 | 31 | 286 | 2.21e-108 | 320 |
MS.gene30894.t1 | AT5G02840 | 63.178 | 258 | 82 | 4 | 119 | 365 | 31 | 286 | 2.21e-108 | 320 |
MS.gene30894.t1 | AT3G09600 | 65.899 | 217 | 67 | 3 | 154 | 364 | 5 | 220 | 1.14e-98 | 293 |
MS.gene30894.t1 | AT3G09600 | 65.899 | 217 | 67 | 3 | 154 | 364 | 5 | 220 | 1.14e-98 | 293 |
MS.gene30894.t1 | AT3G09600 | 64.889 | 225 | 66 | 4 | 154 | 372 | 5 | 222 | 4.35e-96 | 286 |
MS.gene30894.t1 | AT3G09600 | 64.889 | 225 | 66 | 4 | 154 | 372 | 5 | 222 | 4.35e-96 | 286 |
MS.gene30894.t1 | AT5G02840 | 63.913 | 230 | 70 | 4 | 119 | 337 | 31 | 258 | 9.42e-96 | 287 |
MS.gene30894.t1 | AT5G02840 | 63.478 | 230 | 71 | 4 | 119 | 337 | 31 | 258 | 3.06e-95 | 286 |
MS.gene30894.t1 | AT5G52660 | 53.381 | 281 | 121 | 4 | 108 | 380 | 44 | 322 | 7.66e-87 | 266 |
MS.gene30894.t1 | AT5G52660 | 51.773 | 282 | 125 | 4 | 108 | 380 | 44 | 323 | 8.54e-86 | 264 |
MS.gene30894.t1 | AT1G01520 | 54.615 | 260 | 94 | 6 | 115 | 364 | 40 | 285 | 6.12e-83 | 255 |
MS.gene30894.t1 | AT4G01280 | 52.000 | 275 | 109 | 7 | 106 | 363 | 29 | 297 | 1.51e-81 | 252 |
MS.gene30894.t1 | AT1G01520 | 55.600 | 250 | 87 | 6 | 115 | 354 | 40 | 275 | 1.06e-80 | 249 |
MS.gene30894.t1 | AT4G01280 | 51.460 | 274 | 111 | 7 | 106 | 363 | 29 | 296 | 2.11e-80 | 249 |
MS.gene30894.t1 | AT1G01520 | 54.077 | 233 | 83 | 6 | 115 | 337 | 40 | 258 | 4.90e-70 | 221 |
MS.gene30894.t1 | AT1G01520 | 54.077 | 233 | 83 | 6 | 115 | 337 | 40 | 258 | 4.90e-70 | 221 |
MS.gene30894.t1 | AT5G17300 | 55.000 | 100 | 37 | 1 | 118 | 209 | 37 | 136 | 1.49e-26 | 109 |
MS.gene30894.t1 | AT5G37260 | 56.701 | 97 | 38 | 1 | 117 | 209 | 17 | 113 | 1.29e-25 | 105 |
MS.gene30894.t1 | AT1G01520 | 71.429 | 63 | 18 | 0 | 302 | 364 | 139 | 201 | 1.83e-25 | 102 |
MS.gene30894.t1 | AT1G18330 | 55.319 | 94 | 34 | 2 | 125 | 210 | 39 | 132 | 1.35e-23 | 100 |
MS.gene30894.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 115 | 194 | 3 | 82 | 1.63e-23 | 102 |
MS.gene30894.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 115 | 194 | 3 | 82 | 1.63e-23 | 102 |
MS.gene30894.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 115 | 194 | 3 | 82 | 1.63e-23 | 102 |
MS.gene30894.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 115 | 194 | 3 | 82 | 1.63e-23 | 102 |
MS.gene30894.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 115 | 194 | 3 | 82 | 1.63e-23 | 102 |
MS.gene30894.t1 | AT1G01060 | 51.250 | 80 | 39 | 0 | 115 | 194 | 3 | 82 | 1.64e-23 | 102 |
MS.gene30894.t1 | AT3G10113 | 44.681 | 141 | 62 | 4 | 83 | 210 | 10 | 147 | 1.95e-23 | 100 |
MS.gene30894.t1 | AT1G18330 | 55.319 | 94 | 34 | 2 | 125 | 210 | 65 | 158 | 2.81e-23 | 100 |
MS.gene30894.t1 | AT2G46830 | 59.722 | 72 | 29 | 0 | 115 | 186 | 3 | 74 | 1.74e-22 | 99.8 |
Find 85 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTACAATGGGATCAAAATT+AGG | 0.151868 | 1.2:+50399728 | None:intergenic |
CTACCAGCATCCATTGCTTT+TGG | 0.209435 | 1.2:-50403823 | MS.gene30894:CDS |
TTAGGATGATAGCTTGAAAT+TGG | 0.231205 | 1.2:+50405207 | None:intergenic |
CGTACCTCATCTTGGATGTT+AGG | 0.257541 | 1.2:+50405189 | None:intergenic |
CCGGACTTTGCTGAAGTTTA+CGG | 0.260906 | 1.2:-50403066 | MS.gene30894:CDS |
TGAGTTAGAATTAGAGTTCA+TGG | 0.279860 | 1.2:+50404906 | None:intergenic |
CTCACAGTTTCAAAGTTTAT+AGG | 0.310240 | 1.2:+50402979 | None:intergenic |
TGGCTCTAAAACAGTTATTC+AGG | 0.322186 | 1.2:-50404615 | MS.gene30894:intron |
CTTGACTTGGTAATTGTGTA+AGG | 0.342024 | 1.2:+50404817 | None:intergenic |
TCACAGTTTCAAAGTTTATA+GGG | 0.345459 | 1.2:+50402980 | None:intergenic |
AGTTGTTGATTACAATTTGT+TGG | 0.345936 | 1.2:-50405253 | MS.gene30894:CDS |
ACGATATTTAACAGGTTTGC+CGG | 0.354143 | 1.2:-50403085 | MS.gene30894:intron |
TTACAATGGGATCAAAATTA+GGG | 0.364435 | 1.2:+50399729 | None:intergenic |
CTAGTTGTTGTAGTTGTTGT+TGG | 0.376561 | 1.2:+50404874 | None:intergenic |
CTTGGATGTCGAGTATTTGA+TGG | 0.385550 | 1.2:+50405324 | None:intergenic |
TATTCAGATTTGATAGAGAT+TGG | 0.391995 | 1.2:-50404658 | MS.gene30894:intron |
TTCTTAAAGGTTCAAAAGAA+TGG | 0.393543 | 1.2:-50404439 | MS.gene30894:CDS |
TGCACATGGCCGTTTGTATC+CGG | 0.400201 | 1.2:+50403021 | None:intergenic |
TGACATACCCTGCAGGTAGA+AGG | 0.407875 | 1.2:+50403785 | None:intergenic |
AAGCTTTACGTACCTCATCT+TGG | 0.412556 | 1.2:+50405181 | None:intergenic |
GGATGAATAGCTTTGCGCTT+AGG | 0.413895 | 1.2:+50404388 | None:intergenic |
ACTAGTGGTGGAGATGCTTC+TGG | 0.418390 | 1.2:-50404856 | MS.gene30894:CDS |
GCTGAAGTTTACGGTTTCAT+TGG | 0.426347 | 1.2:-50403057 | MS.gene30894:CDS |
ATACCCTCATTGGCCGAGTT+AGG | 0.430938 | 1.2:+50405279 | None:intergenic |
GATGAACTCAACAATCTTCA+AGG | 0.432102 | 1.2:-50403724 | MS.gene30894:CDS |
TTAGCTGACATTGGATCAAA+GGG | 0.440291 | 1.2:-50403565 | MS.gene30894:intron |
TGTGCAGAAGCTGAAGGAAA+TGG | 0.443024 | 1.2:-50403004 | MS.gene30894:CDS |
TGTGTTGGTATTTGAGAAGT+AGG | 0.447932 | 1.2:+50403493 | None:intergenic |
TAGAGACAAAGCTAGTTCTT+CGG | 0.451946 | 1.2:-50405358 | MS.gene30894:CDS |
ACACAAAATCCCGTGATTCA+TGG | 0.453178 | 1.2:-50403466 | MS.gene30894:intron |
TGATTACAATTTGTTGGAAA+CGG | 0.453503 | 1.2:-50405247 | MS.gene30894:CDS |
TAGAATTAGAGTTCATGGTT+TGG | 0.460644 | 1.2:+50404911 | None:intergenic |
AATTTGTTGGAAACGGATCC+AGG | 0.463546 | 1.2:-50405240 | MS.gene30894:CDS |
GTTTACCCTTGGTCTGATCA+TGG | 0.465118 | 1.2:-50405123 | MS.gene30894:intron |
CTAGCAATTTCGTTTACCCT+TGG | 0.471488 | 1.2:-50405134 | MS.gene30894:CDS |
TTTACTGATTTAGCTGACAT+TGG | 0.472761 | 1.2:-50403574 | MS.gene30894:intron |
TTTCCTTCAGCTTCTGCACA+TGG | 0.485443 | 1.2:+50403007 | None:intergenic |
AACAATCTTCAAGGAAATGA+AGG | 0.487995 | 1.2:-50403715 | MS.gene30894:intron |
TTGCGCTTAGGACGAGGAGG+AGG | 0.489119 | 1.2:+50404400 | None:intergenic |
ATCAGCAACAGCGGTCTTAG+TGG | 0.492479 | 1.2:-50403541 | MS.gene30894:CDS |
GAACTCTAATTCTAACTCAA+TGG | 0.493422 | 1.2:-50404902 | MS.gene30894:CDS |
GAAATTGGAGACCTAAGTCC+TGG | 0.495267 | 1.2:+50405222 | None:intergenic |
GCAAATACCCTTCTACCTGC+AGG | 0.497509 | 1.2:-50403793 | MS.gene30894:CDS |
GAGCCAAAAGCAATGGATGC+TGG | 0.501558 | 1.2:+50403820 | None:intergenic |
TGGAAACGGATCCAGGACTT+AGG | 0.504481 | 1.2:-50405233 | MS.gene30894:CDS |
CATGCTGATGAATACTTGTC+AGG | 0.511561 | 1.2:-50403746 | MS.gene30894:CDS |
AACAACTTGAATACCCTCAT+TGG | 0.512185 | 1.2:+50405269 | None:intergenic |
GTGTTGGTATTTGAGAAGTA+GGG | 0.528190 | 1.2:+50403494 | None:intergenic |
TTTAGCTGACATTGGATCAA+AGG | 0.530841 | 1.2:-50403566 | MS.gene30894:intron |
CCGTAAACTTCAGCAAAGTC+CGG | 0.533484 | 1.2:+50403066 | None:intergenic |
AGACCAGCTTTCTCTTGACT+TGG | 0.533707 | 1.2:+50404804 | None:intergenic |
CAAGGGTAAACGAAATTGCT+AGG | 0.534788 | 1.2:+50405135 | None:intergenic |
AAAGCAATGGATGCTGGTAG+TGG | 0.539195 | 1.2:+50403826 | None:intergenic |
TGGAGATGCTTCTGGTAAGA+AGG | 0.544373 | 1.2:-50404848 | MS.gene30894:CDS |
AGCTTTGTCTCTAGAAAGCA+CGG | 0.558118 | 1.2:+50405368 | None:intergenic |
TACCTGCAGGGTATGTCACG+TGG | 0.562293 | 1.2:-50403780 | MS.gene30894:CDS |
ATAGCTTTGCGCTTAGGACG+AGG | 0.563263 | 1.2:+50404394 | None:intergenic |
TACACCTAACTCGGCCAATG+AGG | 0.584724 | 1.2:-50405283 | MS.gene30894:CDS |
GACATACCCTGCAGGTAGAA+GGG | 0.588018 | 1.2:+50403786 | None:intergenic |
TTACCAAGTCAAGAGAAAGC+TGG | 0.591540 | 1.2:-50404807 | MS.gene30894:CDS |
TGCCGAAGAGCCAAAAGCAA+TGG | 0.592704 | 1.2:+50403813 | None:intergenic |
ACAACTACAACAACTAGTGG+TGG | 0.601385 | 1.2:-50404868 | MS.gene30894:CDS |
AAATGAAGTTACACCTAACT+CGG | 0.604714 | 1.2:-50405292 | MS.gene30894:CDS |
CAAATACCCTTCTACCTGCA+GGG | 0.604923 | 1.2:-50403792 | MS.gene30894:CDS |
ACACCTAACTCGGCCAATGA+GGG | 0.613513 | 1.2:-50405282 | MS.gene30894:CDS |
CGGCCATGTGCAGAAGCTGA+AGG | 0.613903 | 1.2:-50403010 | MS.gene30894:CDS |
AAATTGCTAGTGGTCAGTAG+TGG | 0.620002 | 1.2:+50397811 | None:intergenic |
TGCGCTTAGGACGAGGAGGA+GGG | 0.622142 | 1.2:+50404401 | None:intergenic |
ACCTGCAGGGTATGTCACGT+GGG | 0.625418 | 1.2:-50403779 | MS.gene30894:CDS |
CAGACGATTACCATGAATCA+CGG | 0.628602 | 1.2:+50403456 | None:intergenic |
AGACGATTACCATGAATCAC+GGG | 0.628967 | 1.2:+50403457 | None:intergenic |
GTCTACCATGATCAGACCAA+GGG | 0.631510 | 1.2:+50405118 | None:intergenic |
TCCCACGTGACATACCCTGC+AGG | 0.633438 | 1.2:+50403778 | None:intergenic |
CTGACAAGTATTCATCAGCA+TGG | 0.637093 | 1.2:+50403747 | None:intergenic |
ACAACAACTACAACAACTAG+TGG | 0.647197 | 1.2:-50404871 | MS.gene30894:CDS |
TCATCCTAACATCCAAGATG+AGG | 0.653385 | 1.2:-50405193 | MS.gene30894:CDS |
GGCTAGACAAGTTGACAGTG+AGG | 0.653452 | 1.2:+50399750 | None:intergenic |
ACTTCTCAAATACCAACACA+AGG | 0.657953 | 1.2:-50403490 | MS.gene30894:CDS |
TCAAAGGGGATCAGCAACAG+CGG | 0.674075 | 1.2:-50403550 | MS.gene30894:CDS |
GTGTTGAAGATACTAATACA+AGG | 0.674684 | 1.2:-50403519 | MS.gene30894:CDS |
TGTCTACCATGATCAGACCA+AGG | 0.681573 | 1.2:+50405117 | None:intergenic |
GCTTTGTCTCTAGAAAGCAC+GGG | 0.696977 | 1.2:+50405369 | None:intergenic |
GCTTTGCGCTTAGGACGAGG+AGG | 0.703477 | 1.2:+50404397 | None:intergenic |
CTTCTCAAATACCAACACAA+GGG | 0.709558 | 1.2:-50403489 | MS.gene30894:CDS |
TAGCTGACATTGGATCAAAG+GGG | 0.749798 | 1.2:-50403564 | MS.gene30894:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 50397817 | 50405406 | 50397817 | ID=MS.gene30894 |
chr1.2 | mRNA | 50397817 | 50405406 | 50397817 | ID=MS.gene30894.t1;Parent=MS.gene30894 |
chr1.2 | exon | 50405124 | 50405406 | 50405124 | ID=MS.gene30894.t1.exon1;Parent=MS.gene30894.t1 |
chr1.2 | CDS | 50405124 | 50405406 | 50405124 | ID=cds.MS.gene30894.t1;Parent=MS.gene30894.t1 |
chr1.2 | exon | 50404766 | 50404940 | 50404766 | ID=MS.gene30894.t1.exon2;Parent=MS.gene30894.t1 |
chr1.2 | CDS | 50404766 | 50404940 | 50404766 | ID=cds.MS.gene30894.t1;Parent=MS.gene30894.t1 |
chr1.2 | exon | 50404616 | 50404673 | 50404616 | ID=MS.gene30894.t1.exon3;Parent=MS.gene30894.t1 |
chr1.2 | CDS | 50404616 | 50404673 | 50404616 | ID=cds.MS.gene30894.t1;Parent=MS.gene30894.t1 |
chr1.2 | exon | 50404362 | 50404485 | 50404362 | ID=MS.gene30894.t1.exon4;Parent=MS.gene30894.t1 |
chr1.2 | CDS | 50404362 | 50404485 | 50404362 | ID=cds.MS.gene30894.t1;Parent=MS.gene30894.t1 |
chr1.2 | exon | 50403716 | 50403856 | 50403716 | ID=MS.gene30894.t1.exon5;Parent=MS.gene30894.t1 |
chr1.2 | CDS | 50403716 | 50403856 | 50403716 | ID=cds.MS.gene30894.t1;Parent=MS.gene30894.t1 |
chr1.2 | exon | 50403467 | 50403583 | 50403467 | ID=MS.gene30894.t1.exon6;Parent=MS.gene30894.t1 |
chr1.2 | CDS | 50403467 | 50403583 | 50403467 | ID=cds.MS.gene30894.t1;Parent=MS.gene30894.t1 |
chr1.2 | exon | 50402984 | 50403093 | 50402984 | ID=MS.gene30894.t1.exon7;Parent=MS.gene30894.t1 |
chr1.2 | CDS | 50402984 | 50403093 | 50402984 | ID=cds.MS.gene30894.t1;Parent=MS.gene30894.t1 |
chr1.2 | exon | 50399733 | 50399792 | 50399733 | ID=MS.gene30894.t1.exon8;Parent=MS.gene30894.t1 |
chr1.2 | CDS | 50399733 | 50399792 | 50399733 | ID=cds.MS.gene30894.t1;Parent=MS.gene30894.t1 |
chr1.2 | exon | 50397817 | 50397921 | 50397817 | ID=MS.gene30894.t1.exon9;Parent=MS.gene30894.t1 |
chr1.2 | CDS | 50397817 | 50397921 | 50397817 | ID=cds.MS.gene30894.t1;Parent=MS.gene30894.t1 |
Gene Sequence |
Protein sequence |