Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31043.t1 | XP_003602475.1 | 82.6 | 247 | 35 | 2 | 1 | 240 | 1 | 246 | 1.80E-97 | 365.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31043.t1 | G7JA94 | 82.6 | 247 | 35 | 2 | 1 | 240 | 1 | 246 | 1.3e-97 | 365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049366 | MS.gene31043 | 0.983157 | 5.54E-157 | -1.69E-46 |
| MS.gene056692 | MS.gene31043 | 0.805817 | 1.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31043.t1 | MTR_3g094780 | 90.283 | 247 | 16 | 2 | 1 | 240 | 1 | 246 | 1.61e-146 | 409 |
| MS.gene31043.t1 | MTR_3g094780 | 88.770 | 187 | 13 | 2 | 1 | 180 | 1 | 186 | 1.09e-111 | 318 |
| MS.gene31043.t1 | MTR_4g078130 | 49.167 | 120 | 59 | 1 | 68 | 187 | 90 | 207 | 8.58e-31 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31043.t1 | AT5G09995 | 54.497 | 189 | 81 | 2 | 52 | 240 | 73 | 256 | 4.97e-65 | 202 |
| MS.gene31043.t1 | AT5G09995 | 54.497 | 189 | 82 | 2 | 52 | 240 | 73 | 257 | 6.73e-65 | 202 |
| MS.gene31043.t1 | AT5G09995 | 66.412 | 131 | 44 | 0 | 52 | 182 | 73 | 203 | 3.44e-54 | 173 |
| MS.gene31043.t1 | AT1G08530 | 47.581 | 124 | 63 | 1 | 64 | 187 | 94 | 215 | 4.33e-31 | 115 |
| MS.gene31043.t1 | AT1G08530 | 50.000 | 110 | 55 | 0 | 64 | 173 | 94 | 203 | 1.40e-29 | 111 |
| MS.gene31043.t1 | AT1G08530 | 54.878 | 82 | 37 | 0 | 64 | 145 | 94 | 175 | 1.15e-20 | 86.7 |
Find 80 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTCCTTGGGTAATTTCT+TGG | 0.214369 | 3.3:-78686049 | None:intergenic |
| CGCGAGAGACGGAATTATTA+AGG | 0.254183 | 3.3:+78686671 | MS.gene31043:CDS |
| TTCTGCAATTCCCACTCTTC+TGG | 0.267213 | 3.3:+78685534 | MS.gene31043:CDS |
| ACCCGAGTCAGGCTCAGTTT+TGG | 0.293260 | 3.3:-78686619 | None:intergenic |
| CATCTCTTCCCCTCTCTCAT+TGG | 0.301487 | 3.3:+78685356 | MS.gene31043:CDS |
| ATGGCTGCAATTCGATTATC+TGG | 0.309283 | 3.3:+78685702 | MS.gene31043:CDS |
| GTTCTATTTAGCTTCGTTGC+AGG | 0.323824 | 3.3:+78686581 | MS.gene31043:intron |
| TCATCACTGGACGTGGAAAA+AGG | 0.330267 | 3.3:+78686754 | MS.gene31043:CDS |
| CGAATTGCAGCCATTGTATC+AGG | 0.330721 | 3.3:-78685693 | None:intergenic |
| ACCACTCAACTCAGTGATCT+TGG | 0.347530 | 3.3:+78685744 | MS.gene31043:CDS |
| GGAATCACTTGAAAAGCTTA+TGG | 0.380649 | 3.3:+78685650 | MS.gene31043:CDS |
| AACTTGAAGCTTGAAATTGC+AGG | 0.393308 | 3.3:-78685186 | None:intergenic |
| GAGGGATTGGGGAAGAGCGA+GGG | 0.394776 | 3.3:-78685290 | None:intergenic |
| ACCATGCCTTCTTCATCTTC+AGG | 0.400589 | 3.3:+78686125 | MS.gene31043:CDS |
| ACCGCAAGTGCACCCGAGTC+AGG | 0.412452 | 3.3:-78686630 | None:intergenic |
| GTTGTGGCGTAGAGAGGGAT+TGG | 0.442852 | 3.3:-78685303 | None:intergenic |
| TTCTTCAAGCTTAGACAAAT+CGG | 0.446605 | 3.3:-78685217 | None:intergenic |
| AGGGATTGGGGAAGAGCGAG+GGG | 0.456892 | 3.3:-78685289 | None:intergenic |
| AGAGGGATTGGGGAAGAGCG+AGG | 0.457366 | 3.3:-78685291 | None:intergenic |
| GTGGTTCGCTCGGCTGAGGA+GGG | 0.461041 | 3.3:+78686086 | MS.gene31043:CDS |
| TTGTGGCGTAGAGAGGGATT+GGG | 0.466139 | 3.3:-78685302 | None:intergenic |
| CGTGGTTCGCTCGGCTGAGG+AGG | 0.467600 | 3.3:+78686085 | MS.gene31043:CDS |
| TTTGCTCTCAAGTTCATCAC+TGG | 0.470008 | 3.3:+78686741 | MS.gene31043:CDS |
| CTCAAGTTCATCACTGGACG+TGG | 0.470643 | 3.3:+78686747 | MS.gene31043:CDS |
| GAGAAGAGTGAGGTGGCGTT+GGG | 0.471069 | 3.3:-78685386 | None:intergenic |
| TGTGGCGTAGAGAGGGATTG+GGG | 0.474365 | 3.3:-78685301 | None:intergenic |
| TCGCGTGGTTCGCTCGGCTG+AGG | 0.474505 | 3.3:+78686082 | MS.gene31043:CDS |
| AAGAAGGCATGGTGGTTAAA+CGG | 0.474640 | 3.3:-78686115 | None:intergenic |
| GCCCAAAACTGAGCCTGACT+CGG | 0.481716 | 3.3:+78686617 | MS.gene31043:CDS |
| ATCCACTCGCGTGGTTCGCT+CGG | 0.484762 | 3.3:+78686076 | MS.gene31043:CDS |
| GTACGTTGTGAATGAGTGTT+GGG | 0.488937 | 3.3:-78685247 | None:intergenic |
| CCACTCAACTCAGTGATCTT+GGG | 0.489821 | 3.3:+78685745 | MS.gene31043:CDS |
| GTACCACTACGGCGAGAGCT+TGG | 0.490321 | 3.3:-78685408 | None:intergenic |
| GGAGAAGAGTGAGGTGGCGT+TGG | 0.492814 | 3.3:-78685387 | None:intergenic |
| TTCTATTTAGCTTCGTTGCA+GGG | 0.496963 | 3.3:+78686582 | MS.gene31043:intron |
| GCGAAGGTTGTGGCGTAGAG+AGG | 0.502934 | 3.3:-78685309 | None:intergenic |
| AACAAGGCTTACCAGAAGAG+TGG | 0.509829 | 3.3:-78685545 | None:intergenic |
| TCGCATTACATCTCCACCGT+TGG | 0.514652 | 3.3:+78685328 | MS.gene31043:CDS |
| GCCTGACTCGGGTGCACTTG+CGG | 0.515689 | 3.3:+78686629 | MS.gene31043:CDS |
| GCGAGAGACGGAATTATTAA+GGG | 0.524578 | 3.3:+78686672 | MS.gene31043:CDS |
| CCCAAAACTGAGCCTGACTC+GGG | 0.536444 | 3.3:+78686618 | MS.gene31043:CDS |
| GGGGTTTAGTAGTAAAAGAG+AGG | 0.540631 | 3.3:-78685270 | None:intergenic |
| TGTGAATGAGTGTTGGGGAA+AGG | 0.547861 | 3.3:-78685241 | None:intergenic |
| TCCGCAAAAGGCGCGAGAGA+CGG | 0.551229 | 3.3:+78686660 | MS.gene31043:CDS |
| GCGGTGGCAAGATCCGCAAA+AGG | 0.551743 | 3.3:+78686648 | MS.gene31043:CDS |
| CGAAGGTTGTGGCGTAGAGA+GGG | 0.555024 | 3.3:-78685308 | None:intergenic |
| ACTTGAAGCTTGAAATTGCA+GGG | 0.555600 | 3.3:-78685185 | None:intergenic |
| TGCAATTCGATTATCTGGAA+TGG | 0.567276 | 3.3:+78685707 | MS.gene31043:CDS |
| AGAGGAACTTCCTGATACAA+TGG | 0.577089 | 3.3:+78685683 | MS.gene31043:CDS |
| ACCTGAAGATGAAGAAGGCA+TGG | 0.579013 | 3.3:-78686126 | None:intergenic |
| AGCCGAGCGAACCACGCGAG+TGG | 0.579367 | 3.3:-78686078 | None:intergenic |
| TGGTTCGCTCGGCTGAGGAG+GGG | 0.581712 | 3.3:+78686087 | MS.gene31043:CDS |
| GCTTATGGATACAGCAAGAG+AGG | 0.589075 | 3.3:+78685665 | MS.gene31043:CDS |
| ACAAGGCTTACCAGAAGAGT+GGG | 0.589685 | 3.3:-78685544 | None:intergenic |
| GGGTTTAGTAGTAAAAGAGA+GGG | 0.590751 | 3.3:-78685269 | None:intergenic |
| GGTACGTTGTGAATGAGTGT+TGG | 0.591363 | 3.3:-78685248 | None:intergenic |
| GGAGAAGTTCCAATGAGAGA+GGG | 0.600387 | 3.3:-78685365 | None:intergenic |
| AGGTAACCTGAAGATGAAGA+AGG | 0.601064 | 3.3:-78686131 | None:intergenic |
| TCTCCAAGCTCTCGCCGTAG+TGG | 0.605139 | 3.3:+78685405 | MS.gene31043:CDS |
| CAAAACTTGAGAATTGAGCA+AGG | 0.606164 | 3.3:-78686722 | None:intergenic |
| GGGAGAAGTTCCAATGAGAG+AGG | 0.608355 | 3.3:-78685366 | None:intergenic |
| GAGATGTAATGCGAAGGTTG+TGG | 0.614582 | 3.3:-78685319 | None:intergenic |
| TGACTCGGGTGCACTTGCGG+TGG | 0.623387 | 3.3:+78686632 | MS.gene31043:CDS |
| GAGAAGTTCCAATGAGAGAG+GGG | 0.631741 | 3.3:-78685364 | None:intergenic |
| TTCAAGCTTAGACAAATCGG+TGG | 0.634472 | 3.3:-78685214 | None:intergenic |
| CGAGAGCTTGGAGAAGAGTG+AGG | 0.641388 | 3.3:-78685396 | None:intergenic |
| GGGAAGAGATGAAGAACCAA+CGG | 0.642166 | 3.3:-78685344 | None:intergenic |
| CCCAAGATCACTGAGTTGAG+TGG | 0.642427 | 3.3:-78685745 | None:intergenic |
| CGTTGCAGGGAATCGAACAA+AGG | 0.649612 | 3.3:+78686595 | MS.gene31043:CDS |
| TGCAGCCAAGAAATTACCCA+AGG | 0.660341 | 3.3:+78686044 | MS.gene31043:intron |
| GAGCTTGGAGAAGAGTGAGG+TGG | 0.660991 | 3.3:-78685393 | None:intergenic |
| AAAACTTGAGAATTGAGCAA+GGG | 0.662486 | 3.3:-78686721 | None:intergenic |
| ATTCAGAGTAAGTACCACTA+CGG | 0.674339 | 3.3:-78685419 | None:intergenic |
| GAAGGCTTTCAAGAGAGCAG+CGG | 0.687355 | 3.3:+78685629 | MS.gene31043:intron |
| ACGGTGGAGATGTAATGCGA+AGG | 0.688216 | 3.3:-78685325 | None:intergenic |
| AGTTAAAAGATCCACTCGCG+TGG | 0.696128 | 3.3:+78686067 | MS.gene31043:CDS |
| AAGAGATGAAGAACCAACGG+TGG | 0.703717 | 3.3:-78685341 | None:intergenic |
| TGAAGATGAAGAAGGCATGG+TGG | 0.713708 | 3.3:-78686123 | None:intergenic |
| TACGTTGTGAATGAGTGTTG+GGG | 0.736539 | 3.3:-78685246 | None:intergenic |
| AGACAGCGATATGTACAACG+TGG | 0.808708 | 3.3:+78685503 | MS.gene31043:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGCAAAAAATCAATTTG+AGG | - | chr3.3:78685477-78685496 | None:intergenic | 20.0% |
| !! | GTCATAAAATATTGTTCATT+TGG | + | chr3.3:78686559-78686578 | MS.gene31043:intron | 20.0% |
| !! | TCTGATGTAATAAATAATGA+AGG | + | chr3.3:78685611-78685630 | MS.gene31043:intron | 20.0% |
| !!! | TATAATTTGAGATTGTAGAT+AGG | + | chr3.3:78686375-78686394 | MS.gene31043:intron | 20.0% |
| ! | CAACAAATTCAATTCAGTAA+CGG | - | chr3.3:78685451-78685470 | None:intergenic | 25.0% |
| ! | CAGCATTATAATAGTGTTAT+AGG | - | chr3.3:78686500-78686519 | None:intergenic | 25.0% |
| ! | TAGATTGATCATATAAAAGC+AGG | - | chr3.3:78685909-78685928 | None:intergenic | 25.0% |
| ! | TAGTCGTAGATAATTATTTC+TGG | + | chr3.3:78685571-78685590 | MS.gene31043:intron | 25.0% |
| ! | TGACTAGAATGAATTCAAAA+TGG | - | chr3.3:78685780-78685799 | None:intergenic | 25.0% |
| !! | TAGAATGCAATTTAGAACTA+TGG | + | chr3.3:78686535-78686554 | MS.gene31043:intron | 25.0% |
| AAAACTTGAGAATTGAGCAA+GGG | - | chr3.3:78686724-78686743 | None:intergenic | 30.0% | |
| AAATTGCTACAATTACACTG+CGG | + | chr3.3:78686411-78686430 | MS.gene31043:intron | 30.0% | |
| AACACAAACTCATGATTAGT+AGG | - | chr3.3:78686154-78686173 | None:intergenic | 30.0% | |
| AACAGATACATGTTGGATTA+CGG | + | chr3.3:78686290-78686309 | MS.gene31043:intron | 30.0% | |
| ACACACATTGAAACAGTATT+TGG | + | chr3.3:78686006-78686025 | MS.gene31043:intron | 30.0% | |
| ATACTGTTTCAATGTGTGTT+TGG | - | chr3.3:78686005-78686024 | None:intergenic | 30.0% | |
| ATATGGTTCCTTCACATTAA+CGG | - | chr3.3:78686321-78686340 | None:intergenic | 30.0% | |
| TCTTACAACATATAGGTGTT+AGG | + | chr3.3:78686348-78686367 | MS.gene31043:intron | 30.0% | |
| TTCTTCAAGCTTAGACAAAT+CGG | - | chr3.3:78685220-78685239 | None:intergenic | 30.0% | |
| !! | ATTCAATTCAGTAACGGATT+TGG | - | chr3.3:78685445-78685464 | None:intergenic | 30.0% |
| AACTTGAAGCTTGAAATTGC+AGG | - | chr3.3:78685189-78685208 | None:intergenic | 35.0% | |
| ACTTGAAGCTTGAAATTGCA+GGG | - | chr3.3:78685188-78685207 | None:intergenic | 35.0% | |
| ATTCAGAGTAAGTACCACTA+CGG | - | chr3.3:78685422-78685441 | None:intergenic | 35.0% | |
| CAAAACTTGAGAATTGAGCA+AGG | - | chr3.3:78686725-78686744 | None:intergenic | 35.0% | |
| GGAATCACTTGAAAAGCTTA+TGG | + | chr3.3:78685650-78685669 | MS.gene31043:CDS | 35.0% | |
| GGGTTTAGTAGTAAAAGAGA+GGG | - | chr3.3:78685272-78685291 | None:intergenic | 35.0% | |
| TAACTCCTTGGGTAATTTCT+TGG | - | chr3.3:78686052-78686071 | None:intergenic | 35.0% | |
| TCCAACATGTATCTGTTGTA+AGG | - | chr3.3:78686287-78686306 | None:intergenic | 35.0% | |
| TGCAATTCGATTATCTGGAA+TGG | + | chr3.3:78685707-78685726 | MS.gene31043:CDS | 35.0% | |
| TTATCTACGACTACCAAACA+AGG | - | chr3.3:78685564-78685583 | None:intergenic | 35.0% | |
| ! | TTCTATTTAGCTTCGTTGCA+GGG | + | chr3.3:78686582-78686601 | MS.gene31043:intron | 35.0% |
| !! | AGTGGATCTTTTAACTCCTT+GGG | - | chr3.3:78686063-78686082 | None:intergenic | 35.0% |
| AGAGGAACTTCCTGATACAA+TGG | + | chr3.3:78685683-78685702 | MS.gene31043:CDS | 40.0% | |
| AGGTAACCTGAAGATGAAGA+AGG | - | chr3.3:78686134-78686153 | None:intergenic | 40.0% | |
| ATCGATCTAGTCATACGTGT+CGG | + | chr3.3:78686261-78686280 | MS.gene31043:intron | 40.0% | |
| ATGGCTGCAATTCGATTATC+TGG | + | chr3.3:78685702-78685721 | MS.gene31043:CDS | 40.0% | |
| GCCTTACAACAGATACATGT+TGG | + | chr3.3:78686283-78686302 | MS.gene31043:intron | 40.0% | |
| GCGAGAGACGGAATTATTAA+GGG | + | chr3.3:78686672-78686691 | MS.gene31043:CDS | 40.0% | |
| GGGGTTTAGTAGTAAAAGAG+AGG | - | chr3.3:78685273-78685292 | None:intergenic | 40.0% | |
| GTACGTTGTGAATGAGTGTT+GGG | - | chr3.3:78685250-78685269 | None:intergenic | 40.0% | |
| TTCAAGCTTAGACAAATCGG+TGG | - | chr3.3:78685217-78685236 | None:intergenic | 40.0% | |
| TTTGCTCTCAAGTTCATCAC+TGG | + | chr3.3:78686741-78686760 | MS.gene31043:CDS | 40.0% | |
| ! | AAGAAGGCATGGTGGTTAAA+CGG | - | chr3.3:78686118-78686137 | None:intergenic | 40.0% |
| ! | GTTCTATTTAGCTTCGTTGC+AGG | + | chr3.3:78686581-78686600 | MS.gene31043:intron | 40.0% |
| ! | TACGTTGTGAATGAGTGTTG+GGG | - | chr3.3:78685249-78685268 | None:intergenic | 40.0% |
| !! | ATTAAGCGTCGACACATACA+TGG | + | chr3.3:78686188-78686207 | MS.gene31043:intron | 40.0% |
| !! | GAGTGGATCTTTTAACTCCT+TGG | - | chr3.3:78686064-78686083 | None:intergenic | 40.0% |
| AACAAGGCTTACCAGAAGAG+TGG | - | chr3.3:78685548-78685567 | None:intergenic | 45.0% | |
| AAGAGATGAAGAACCAACGG+TGG | - | chr3.3:78685344-78685363 | None:intergenic | 45.0% | |
| ACAAGGCTTACCAGAAGAGT+GGG | - | chr3.3:78685547-78685566 | None:intergenic | 45.0% | |
| ACCACTCAACTCAGTGATCT+TGG | + | chr3.3:78685744-78685763 | MS.gene31043:CDS | 45.0% | |
| ACCATGCCTTCTTCATCTTC+AGG | + | chr3.3:78686125-78686144 | MS.gene31043:CDS | 45.0% | |
| ACCTGAAGATGAAGAAGGCA+TGG | - | chr3.3:78686129-78686148 | None:intergenic | 45.0% | |
| AGACAGCGATATGTACAACG+TGG | + | chr3.3:78685503-78685522 | MS.gene31043:intron | 45.0% | |
| AGTTAAAAGATCCACTCGCG+TGG | + | chr3.3:78686067-78686086 | MS.gene31043:CDS | 45.0% | |
| CCACTCAACTCAGTGATCTT+GGG | + | chr3.3:78685745-78685764 | MS.gene31043:CDS | 45.0% | |
| CGAATTGCAGCCATTGTATC+AGG | - | chr3.3:78685696-78685715 | None:intergenic | 45.0% | |
| CGCGAGAGACGGAATTATTA+AGG | + | chr3.3:78686671-78686690 | MS.gene31043:CDS | 45.0% | |
| GAGAAGTTCCAATGAGAGAG+GGG | - | chr3.3:78685367-78685386 | None:intergenic | 45.0% | |
| GAGATGTAATGCGAAGGTTG+TGG | - | chr3.3:78685322-78685341 | None:intergenic | 45.0% | |
| GCAACCGCAATTTGCAATTG+TGG | - | chr3.3:78686466-78686485 | None:intergenic | 45.0% | |
| GCAGCCACAATTGCAAATTG+CGG | + | chr3.3:78686459-78686478 | MS.gene31043:intron | 45.0% | |
| GCATTCTACAGTCGCAATTG+TGG | - | chr3.3:78686523-78686542 | None:intergenic | 45.0% | |
| GCTTATGGATACAGCAAGAG+AGG | + | chr3.3:78685665-78685684 | MS.gene31043:CDS | 45.0% | |
| GGAGAAGTTCCAATGAGAGA+GGG | - | chr3.3:78685368-78685387 | None:intergenic | 45.0% | |
| GGGAAGAGATGAAGAACCAA+CGG | - | chr3.3:78685347-78685366 | None:intergenic | 45.0% | |
| GGTACGTTGTGAATGAGTGT+TGG | - | chr3.3:78685251-78685270 | None:intergenic | 45.0% | |
| GTCGACACATACATGGATAC+TGG | + | chr3.3:78686195-78686214 | MS.gene31043:intron | 45.0% | |
| TCAACTCAGTGATCTTGGGT+GGG | + | chr3.3:78685749-78685768 | MS.gene31043:intron | 45.0% | |
| TCATCACTGGACGTGGAAAA+AGG | + | chr3.3:78686754-78686773 | MS.gene31043:CDS | 45.0% | |
| TGCAGCCAAGAAATTACCCA+AGG | + | chr3.3:78686044-78686063 | MS.gene31043:intron | 45.0% | |
| TGTGAAGGAACCATATGCGT+CGG | + | chr3.3:78686325-78686344 | MS.gene31043:intron | 45.0% | |
| TGTTGTAAGACCGACGCATA+TGG | - | chr3.3:78686338-78686357 | None:intergenic | 45.0% | |
| TTCTGCAATTCCCACTCTTC+TGG | + | chr3.3:78685534-78685553 | MS.gene31043:CDS | 45.0% | |
| ! | GCGTCGGTCTTACAACATAT+AGG | + | chr3.3:78686341-78686360 | MS.gene31043:intron | 45.0% |
| ! | TGAAGATGAAGAAGGCATGG+TGG | - | chr3.3:78686126-78686145 | None:intergenic | 45.0% |
| !! | CTCTTCTGGTAAGCCTTGTT+TGG | + | chr3.3:78685548-78685567 | MS.gene31043:intron | 45.0% |
| !! | TGTGAATGAGTGTTGGGGAA+AGG | - | chr3.3:78685244-78685263 | None:intergenic | 45.0% |
| ACGGTGGAGATGTAATGCGA+AGG | - | chr3.3:78685328-78685347 | None:intergenic | 50.0% | |
| CATCTCTTCCCCTCTCTCAT+TGG | + | chr3.3:78685356-78685375 | MS.gene31043:CDS | 50.0% | |
| CGGACAAGCCGTTAATGTGA+AGG | + | chr3.3:78686310-78686329 | MS.gene31043:intron | 50.0% | |
| CGTTGCAGGGAATCGAACAA+AGG | + | chr3.3:78686595-78686614 | MS.gene31043:CDS | 50.0% | |
| CTCAACTCAGTGATCTTGGG+TGG | + | chr3.3:78685748-78685767 | MS.gene31043:intron | 50.0% | |
| CTCAAGTTCATCACTGGACG+TGG | + | chr3.3:78686747-78686766 | MS.gene31043:CDS | 50.0% | |
| GAAGGCTTTCAAGAGAGCAG+CGG | + | chr3.3:78685629-78685648 | MS.gene31043:intron | 50.0% | |
| GGGAGAAGTTCCAATGAGAG+AGG | - | chr3.3:78685369-78685388 | None:intergenic | 50.0% | |
| TCGCATTACATCTCCACCGT+TGG | + | chr3.3:78685328-78685347 | MS.gene31043:CDS | 50.0% | |
| TTGTGGCGTAGAGAGGGATT+GGG | - | chr3.3:78685305-78685324 | None:intergenic | 50.0% | |
| ! | CCCAAGATCACTGAGTTGAG+TGG | - | chr3.3:78685748-78685767 | None:intergenic | 50.0% |
| CCCAAAACTGAGCCTGACTC+GGG | + | chr3.3:78686618-78686637 | MS.gene31043:CDS | 55.0% | |
| CGAAGGTTGTGGCGTAGAGA+GGG | - | chr3.3:78685311-78685330 | None:intergenic | 55.0% | |
| CGAGAGCTTGGAGAAGAGTG+AGG | - | chr3.3:78685399-78685418 | None:intergenic | 55.0% | |
| GAGAAGAGTGAGGTGGCGTT+GGG | - | chr3.3:78685389-78685408 | None:intergenic | 55.0% | |
| GAGCTTGGAGAAGAGTGAGG+TGG | - | chr3.3:78685396-78685415 | None:intergenic | 55.0% | |
| GCCCAAAACTGAGCCTGACT+CGG | + | chr3.3:78686617-78686636 | MS.gene31043:CDS | 55.0% | |
| GTTGTGGCGTAGAGAGGGAT+TGG | - | chr3.3:78685306-78685325 | None:intergenic | 55.0% | |
| TGTGGCGTAGAGAGGGATTG+GGG | - | chr3.3:78685304-78685323 | None:intergenic | 55.0% | |
| ! | ACCCGAGTCAGGCTCAGTTT+TGG | - | chr3.3:78686622-78686641 | None:intergenic | 55.0% |
| ! | CCCGAGTCAGGCTCAGTTTT+GGG | - | chr3.3:78686621-78686640 | None:intergenic | 55.0% |
| AGAGGGATTGGGGAAGAGCG+AGG | - | chr3.3:78685294-78685313 | None:intergenic | 60.0% | |
| AGGGATTGGGGAAGAGCGAG+GGG | - | chr3.3:78685292-78685311 | None:intergenic | 60.0% | |
| ATCCACTCGCGTGGTTCGCT+CGG | + | chr3.3:78686076-78686095 | MS.gene31043:CDS | 60.0% | |
| GAGGGATTGGGGAAGAGCGA+GGG | - | chr3.3:78685293-78685312 | None:intergenic | 60.0% | |
| GCGAAGGTTGTGGCGTAGAG+AGG | - | chr3.3:78685312-78685331 | None:intergenic | 60.0% | |
| GCGGTGGCAAGATCCGCAAA+AGG | + | chr3.3:78686648-78686667 | MS.gene31043:CDS | 60.0% | |
| GGAGAAGAGTGAGGTGGCGT+TGG | - | chr3.3:78685390-78685409 | None:intergenic | 60.0% | |
| GTACCACTACGGCGAGAGCT+TGG | - | chr3.3:78685411-78685430 | None:intergenic | 60.0% | |
| TCTCCAAGCTCTCGCCGTAG+TGG | + | chr3.3:78685405-78685424 | MS.gene31043:CDS | 60.0% | |
| ! | TCCGCAAAAGGCGCGAGAGA+CGG | + | chr3.3:78686660-78686679 | MS.gene31043:CDS | 60.0% |
| ! | TCCGTCTCTCGCGCCTTTTG+CGG | - | chr3.3:78686664-78686683 | None:intergenic | 60.0% |
| ACCGCAAGTGCACCCGAGTC+AGG | - | chr3.3:78686633-78686652 | None:intergenic | 65.0% | |
| GTGGTTCGCTCGGCTGAGGA+GGG | + | chr3.3:78686086-78686105 | MS.gene31043:CDS | 65.0% | |
| TGGTTCGCTCGGCTGAGGAG+GGG | + | chr3.3:78686087-78686106 | MS.gene31043:CDS | 65.0% | |
| ! | TGACTCGGGTGCACTTGCGG+TGG | + | chr3.3:78686632-78686651 | MS.gene31043:CDS | 65.0% |
| !! | GCCTGACTCGGGTGCACTTG+CGG | + | chr3.3:78686629-78686648 | MS.gene31043:CDS | 65.0% |
| AGCCGAGCGAACCACGCGAG+TGG | - | chr3.3:78686081-78686100 | None:intergenic | 70.0% | |
| CGTGGTTCGCTCGGCTGAGG+AGG | + | chr3.3:78686085-78686104 | MS.gene31043:CDS | 70.0% | |
| TCGCGTGGTTCGCTCGGCTG+AGG | + | chr3.3:78686082-78686101 | MS.gene31043:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 78685175 | 78686779 | 78685175 | ID=MS.gene31043 |
| chr3.3 | mRNA | 78685175 | 78686779 | 78685175 | ID=MS.gene31043.t1;Parent=MS.gene31043 |
| chr3.3 | exon | 78685175 | 78685426 | 78685175 | ID=MS.gene31043.t1.exon1;Parent=MS.gene31043.t1 |
| chr3.3 | CDS | 78685175 | 78685426 | 78685175 | ID=cds.MS.gene31043.t1;Parent=MS.gene31043.t1 |
| chr3.3 | exon | 78685505 | 78685555 | 78685505 | ID=MS.gene31043.t1.exon2;Parent=MS.gene31043.t1 |
| chr3.3 | CDS | 78685505 | 78685555 | 78685505 | ID=cds.MS.gene31043.t1;Parent=MS.gene31043.t1 |
| chr3.3 | exon | 78685633 | 78685766 | 78685633 | ID=MS.gene31043.t1.exon3;Parent=MS.gene31043.t1 |
| chr3.3 | CDS | 78685633 | 78685766 | 78685633 | ID=cds.MS.gene31043.t1;Parent=MS.gene31043.t1 |
| chr3.3 | exon | 78686049 | 78686146 | 78686049 | ID=MS.gene31043.t1.exon4;Parent=MS.gene31043.t1 |
| chr3.3 | CDS | 78686049 | 78686146 | 78686049 | ID=cds.MS.gene31043.t1;Parent=MS.gene31043.t1 |
| chr3.3 | exon | 78686592 | 78686779 | 78686592 | ID=MS.gene31043.t1.exon5;Parent=MS.gene31043.t1 |
| chr3.3 | CDS | 78686592 | 78686779 | 78686592 | ID=cds.MS.gene31043.t1;Parent=MS.gene31043.t1 |
| Gene Sequence |
| Protein sequence |
