AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31077

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31077.t1 MTR_8g032820 51.786 224 103 3 296 517 95 315 2.88e-72 235
MS.gene31077.t1 MTR_2g049710 41.438 292 115 3 192 483 1 236 3.48e-70 228
MS.gene31077.t1 MTR_1g054530 87.705 122 15 0 271 392 131 252 2.70e-66 216
MS.gene31077.t1 MTR_4g109010 42.437 238 127 4 269 503 920 1150 2.87e-48 181
MS.gene31077.t1 MTR_7g025210 38.655 238 138 4 265 499 67 299 1.93e-47 170
MS.gene31077.t1 MTR_8g009340 36.813 182 103 2 302 483 3 172 1.10e-27 112
MS.gene31077.t1 MTR_0010s0390 85.714 56 8 0 338 393 57 112 2.46e-25 100
MS.gene31077.t1 MTR_1g078060 37.008 127 79 1 389 514 1 127 5.32e-24 98.6
MS.gene31077.t1 MTR_8g467910 34.646 127 82 1 389 514 1 127 1.28e-22 94.4
MS.gene31077.t1 MTR_3g080620 32.308 130 74 1 389 518 1 116 2.05e-15 74.7
MS.gene31077.t1 MTR_1g029390 87.500 40 5 0 354 393 48 87 5.61e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31077.t1 AT1G19260 48.356 517 265 1 1 517 149 663 2.20e-176 517
MS.gene31077.t1 AT3G29763 49.061 479 242 1 10 488 26 502 2.69e-168 487
MS.gene31077.t1 AT4G09660 46.266 482 237 2 36 517 148 607 1.46e-150 447
MS.gene31077.t1 AT3G29765 47.685 432 224 1 86 517 1 430 7.38e-144 426
MS.gene31077.t1 AT1G41920 43.673 490 266 3 33 517 4 488 5.17e-142 419
MS.gene31077.t1 AT3G29450 45.538 437 210 3 31 467 85 493 6.64e-126 379
MS.gene31077.t1 AT2G06541 38.298 517 208 4 1 517 82 487 5.87e-117 358
MS.gene31077.t1 AT2G06541 49.451 273 134 1 1 273 82 350 4.14e-91 290
MS.gene31077.t1 AT3G31402 43.137 153 57 1 36 188 49 171 4.19e-31 125
MS.gene31077.t1 AT3G29794 23.232 396 256 8 88 461 27 396 2.19e-21 97.1
MS.gene31077.t1 AT1G42710 58.462 65 27 0 129 193 119 183 8.85e-19 85.5
MS.gene31077.t1 AT1G42710 32.743 113 74 1 1 111 48 160 1.53e-11 64.3
MS.gene31077.t1 AT4G10200 28.507 221 133 5 7 223 194 393 3.48e-13 72.8
MS.gene31077.t1 AT4G10200 28.507 221 133 5 7 223 194 393 3.48e-13 72.8

Find 79 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAAAACTTTGATCTTAA+AGG 0.152632 2.4:+5685512 MS.gene31077:CDS
TGATGGCTGGGAACCTTTAT+TGG 0.198760 2.4:+5686091 MS.gene31077:CDS
TTTGCAAAATAGTTCATCTA+TGG 0.319284 2.4:-5685415 None:intergenic
GGAGAAGTTGTTAGTGGAAA+AGG 0.355111 2.4:+5685735 MS.gene31077:CDS
GGTACTGGTGAATGGGAAAT+TGG 0.357784 2.4:+5687094 MS.gene31077:CDS
ACTTCCTTGAAATGCTTAGA+TGG 0.366650 2.4:+5685088 MS.gene31077:CDS
GAAAGTGAAGCGAGTTGTAT+TGG 0.379715 2.4:+5685128 MS.gene31077:CDS
AATTGTTAATGCTTCCTCTC+TGG 0.413755 2.4:+5685200 MS.gene31077:CDS
AAAGTTACCTCCTCCAATAA+AGG 0.415432 2.4:-5686104 None:intergenic
TCGAACAACATTTGTTAAAG+TGG 0.427915 2.4:-5685643 None:intergenic
GAAGATGGAGAAGTTGTTAG+TGG 0.432403 2.4:+5685729 MS.gene31077:CDS
AAGGTCATCAATAATAGCTT+TGG 0.435627 2.4:-5685229 None:intergenic
AAAATAGAATCTTCTAATCA+AGG 0.435739 2.4:+5685063 MS.gene31077:CDS
TCCAAAGTGGGAACTCCAAC+GGG 0.438450 2.4:-5685796 None:intergenic
GTCATCAATAATAGCTTTGG+TGG 0.439699 2.4:-5685226 None:intergenic
AACTAGAGAACAAGTTGGTT+GGG 0.444495 2.4:-5686340 None:intergenic
CATACCATCTAAGCATTTCA+AGG 0.444651 2.4:-5685092 None:intergenic
CATATCTGATAGTGAACAAA+TGG 0.446417 2.4:+5685293 MS.gene31077:CDS
GTTACTGGTATGATTGGTAC+TGG 0.456995 2.4:+5687079 MS.gene31077:CDS
CATCGTCAATGCTATGAACT+TGG 0.459644 2.4:+5686031 MS.gene31077:CDS
GTGAATGGGAAATTGGTGAT+TGG 0.461176 2.4:+5687101 MS.gene31077:CDS
ATTAACTAGAAGGTGATCTC+TGG 0.470064 2.4:-5685601 None:intergenic
ACAGCTTCAAACCTCACAAC+AGG 0.472600 2.4:-5687127 None:intergenic
TTAGAAAGTGAAGGCAATCA+AGG 0.473059 2.4:-5685005 None:intergenic
AAGTATATATCATCCATGTT+TGG 0.473491 2.4:-5686155 None:intergenic
ACTTTAACAAATGTTGTTCG+AGG 0.473718 2.4:+5685645 MS.gene31077:CDS
TTTGTATCGAAGGAGGTTAA+CGG 0.475418 2.4:+5684978 MS.gene31077:CDS
TAGTCGATTGCTTATTTGCA+TGG 0.478360 2.4:+5686307 MS.gene31077:CDS
GAGTTCCCACTTTGGAACTT+TGG 0.478471 2.4:+5685803 MS.gene31077:CDS
GTTAAGAATGCATTGGAAGA+TGG 0.487168 2.4:+5685714 MS.gene31077:CDS
TCATCAATTACAACTTGCAT+TGG 0.489307 2.4:+5685569 MS.gene31077:CDS
AAATTCACTTGGATAAAACT+TGG 0.497849 2.4:-5686390 None:intergenic
AAACACTAAGAGATGATGGC+TGG 0.499431 2.4:+5686078 MS.gene31077:CDS
GATGATGTTTCAGTCAAAGA+TGG 0.501112 2.4:+5685879 MS.gene31077:CDS
AAAGCTATTATTGATGACCT+TGG 0.505716 2.4:+5685231 MS.gene31077:CDS
GAGTTCACCATCCATTCAAA+AGG 0.510239 2.4:+5685176 MS.gene31077:CDS
ACCCGTTGGAGTTCCCACTT+TGG 0.510382 2.4:+5685795 MS.gene31077:CDS
GTATGATTGGTACTGGTGAA+TGG 0.514539 2.4:+5687086 MS.gene31077:CDS
ATGGATGATATATACTTTCG+TGG 0.516377 2.4:+5686161 MS.gene31077:CDS
AAACTAGAGAACAAGTTGGT+TGG 0.518596 2.4:-5686341 None:intergenic
CTGGGAACCTTTATTGGAGG+AGG 0.521262 2.4:+5686097 MS.gene31077:CDS
TTGCGTTATGTTAACAAGCA+TGG 0.526915 2.4:+5685324 MS.gene31077:CDS
CTTCACTTTCTAATGAAGCA+AGG 0.531111 2.4:+5685015 MS.gene31077:CDS
AAGTCTCAAGTTGACTATCA+AGG 0.533316 2.4:-5686433 None:intergenic
TGGCTGGGAACCTTTATTGG+AGG 0.534648 2.4:+5686094 MS.gene31077:CDS
TGGCATTAGCATTCCAAACA+TGG 0.535358 2.4:+5686142 MS.gene31077:CDS
CTTACAACTTCAAGAATTCG+TGG 0.535762 2.4:+5685444 MS.gene31077:CDS
TTACAAACACTAAGAGATGA+TGG 0.536396 2.4:+5686074 MS.gene31077:CDS
AAATAGAATCTTCTAATCAA+GGG 0.543399 2.4:+5685064 MS.gene31077:CDS
AATCAATGTTAAGAATGCAT+TGG 0.546849 2.4:+5685707 MS.gene31077:CDS
TATGATTGGTACTGGTGAAT+GGG 0.547624 2.4:+5687087 MS.gene31077:CDS
TCAAGGAATACCAATGTGGT+TGG 0.552897 2.4:-5686416 None:intergenic
GATGGAAGAGGGGAAGCAAA+TGG 0.553452 2.4:+5685897 MS.gene31077:CDS
TTCCAAAGTGGGAACTCCAA+CGG 0.555554 2.4:-5685797 None:intergenic
GTGGTTGGAGAAAATTCACT+TGG 0.557462 2.4:-5686401 None:intergenic
CTTGCTTCATTAGAAAGTGA+AGG 0.565801 2.4:-5685014 None:intergenic
GTTTCAGTCAAAGATGGAAG+AGG 0.572234 2.4:+5685885 MS.gene31077:CDS
AACACTAAGAGATGATGGCT+GGG 0.577503 2.4:+5686079 MS.gene31077:CDS
GTGATTGGATTCCTGTTGTG+AGG 0.582503 2.4:+5687116 MS.gene31077:CDS
TTTCAGTCAAAGATGGAAGA+GGG 0.583308 2.4:+5685886 MS.gene31077:CDS
CAGTGTACATAAAATGCACA+TGG 0.585780 2.4:-5685540 None:intergenic
CAACTCGTGATTTGTATCGA+AGG 0.588698 2.4:+5684968 MS.gene31077:CDS
TAGCAAACAATTCATCTCCA+AGG 0.589857 2.4:-5685248 None:intergenic
AATTCACCAAAGTTCCAAAG+TGG 0.597424 2.4:-5685809 None:intergenic
TAGAAAGTGAAGGCAATCAA+GGG 0.597719 2.4:-5685004 None:intergenic
GTCAAAACTAGAGAACAAGT+TGG 0.605168 2.4:-5686345 None:intergenic
ACTTCAAGAATTCGTGGACA+AGG 0.619139 2.4:+5685450 MS.gene31077:CDS
AGCTTTGGTGGTTTCCAGAG+AGG 0.623757 2.4:-5685214 None:intergenic
ATTCACCAAAGTTCCAAAGT+GGG 0.625744 2.4:-5685808 None:intergenic
GATGGTGCTAGCAACATGCA+AGG 0.632338 2.4:+5685477 MS.gene31077:CDS
CTCGTGATTTGTATCGAAGG+AGG 0.633610 2.4:+5684971 MS.gene31077:CDS
ATGGTGCTAGCAACATGCAA+GGG 0.649035 2.4:+5685478 MS.gene31077:CDS
AACGTGCTGCTGATACCCGT+TGG 0.662965 2.4:+5685781 MS.gene31077:CDS
TTCAGTCAAAGATGGAAGAG+GGG 0.669637 2.4:+5685887 MS.gene31077:CDS
ATTCGTGGACAAGGTTACGA+TGG 0.699775 2.4:+5685459 MS.gene31077:CDS
CGTGGACAATCAAAACGTGG+AGG 0.713882 2.4:+5686179 MS.gene31077:CDS
CAGTATAAAATAATTCAATG+CGG 0.732730 2.4:-5686235 None:intergenic
ACTATCAAGGAATACCAATG+TGG 0.737295 2.4:-5686420 None:intergenic
TTTCGTGGACAATCAAAACG+TGG 0.753967 2.4:+5686176 MS.gene31077:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAGAATCTTCTAATCA+AGG + chr2.4:5685063-5685082 MS.gene31077:CDS 20.0%
!! AAATAGAATCTTCTAATCAA+GGG + chr2.4:5685064-5685083 MS.gene31077:CDS 20.0%
!! CAGTATAAAATAATTCAATG+CGG - chr2.4:5686238-5686257 None:intergenic 20.0%
!! TAAAAAGAGAATTAACTAGA+AGG - chr2.4:5685614-5685633 None:intergenic 20.0%
!!! ATTAACAATTTCCTTTTGAA+TGG - chr2.4:5685190-5685209 None:intergenic 20.0%
!!! TGAATTATTTTATACTGTTG+TGG + chr2.4:5686241-5686260 MS.gene31077:CDS 20.0%
! AAATTCACTTGGATAAAACT+TGG - chr2.4:5686393-5686412 None:intergenic 25.0%
! AACAGCCATATCATTAAAAA+TGG + chr2.4:5685392-5685411 MS.gene31077:CDS 25.0%
! AAGTATATATCATCCATGTT+TGG - chr2.4:5686158-5686177 None:intergenic 25.0%
! AAGTGATCTATCAAAAAAAC+TGG + chr2.4:5686505-5686524 MS.gene31077:intron 25.0%
! AATCAATGTTAAGAATGCAT+TGG + chr2.4:5685707-5685726 MS.gene31077:CDS 25.0%
! CATTTGATGAAAAAAGTCTT+AGG + chr2.4:5685963-5685982 MS.gene31077:CDS 25.0%
! TCTCAAAACTTTGATCTTAA+AGG + chr2.4:5685512-5685531 MS.gene31077:CDS 25.0%
! TTTGCAAAATAGTTCATCTA+TGG - chr2.4:5685418-5685437 None:intergenic 25.0%
!! AGTATTGTTGAACGATTTTT+GGG + chr2.4:5685348-5685367 MS.gene31077:CDS 25.0%
!! GAACTCATTTTATCATTTTC+AGG - chr2.4:5685162-5685181 None:intergenic 25.0%
!!! AAGTATTGTTGAACGATTTT+TGG + chr2.4:5685347-5685366 MS.gene31077:CDS 25.0%
!!! TATGAAGTATTTTGACTACA+AGG + chr2.4:5686799-5686818 MS.gene31077:intron 25.0%
!!! TATGGCCATTTTTAATGATA+TGG - chr2.4:5685400-5685419 None:intergenic 25.0%
AAAAACTGGTTGCAACTAAA+AGG + chr2.4:5686519-5686538 MS.gene31077:intron 30.0%
AAGGTCATCAATAATAGCTT+TGG - chr2.4:5685232-5685251 None:intergenic 30.0%
ACTTTAACAAATGTTGTTCG+AGG + chr2.4:5685645-5685664 MS.gene31077:CDS 30.0%
ATGGATGATATATACTTTCG+TGG + chr2.4:5686161-5686180 MS.gene31077:CDS 30.0%
GTAGAATTTGCATCTTTGAA+AGG + chr2.4:5686479-5686498 MS.gene31077:intron 30.0%
TATTCAACGATTTCAGAAGA+TGG + chr2.4:5686745-5686764 MS.gene31077:intron 30.0%
TCATCAATTACAACTTGCAT+TGG + chr2.4:5685569-5685588 MS.gene31077:CDS 30.0%
TCATTGCTAACTTCAAAAGT+CGG - chr2.4:5686568-5686587 None:intergenic 30.0%
TTACAAACACTAAGAGATGA+TGG + chr2.4:5686074-5686093 MS.gene31077:CDS 30.0%
! AAAGCTATTATTGATGACCT+TGG + chr2.4:5685231-5685250 MS.gene31077:CDS 30.0%
! ACAATTTCCTTTTGAATGGA+TGG - chr2.4:5685186-5685205 None:intergenic 30.0%
! CATATCTGATAGTGAACAAA+TGG + chr2.4:5685293-5685312 MS.gene31077:CDS 30.0%
! GATGAACTATTTTGCAAACA+TGG + chr2.4:5685420-5685439 MS.gene31077:CDS 30.0%
! TCGAACAACATTTGTTAAAG+TGG - chr2.4:5685646-5685665 None:intergenic 30.0%
!! TGTGTTCAAAAAGGTTGATA+AGG + chr2.4:5686715-5686734 MS.gene31077:intron 30.0%
!!! ACTTTATTTTGCAACAAGCA+TGG + chr2.4:5686122-5686141 MS.gene31077:CDS 30.0%
AAAGTTACCTCCTCCAATAA+AGG - chr2.4:5686107-5686126 None:intergenic 35.0%
AATTCACCAAAGTTCCAAAG+TGG - chr2.4:5685812-5685831 None:intergenic 35.0%
AATTGTTAATGCTTCCTCTC+TGG + chr2.4:5685200-5685219 MS.gene31077:CDS 35.0%
ACTATCAAGGAATACCAATG+TGG - chr2.4:5686423-5686442 None:intergenic 35.0%
ACTTCCTTGAAATGCTTAGA+TGG + chr2.4:5685088-5685107 MS.gene31077:CDS 35.0%
ATTAACTAGAAGGTGATCTC+TGG - chr2.4:5685604-5685623 None:intergenic 35.0%
ATTCACCAAAGTTCCAAAGT+GGG - chr2.4:5685811-5685830 None:intergenic 35.0%
CAGTGTACATAAAATGCACA+TGG - chr2.4:5685543-5685562 None:intergenic 35.0%
CATACCATCTAAGCATTTCA+AGG - chr2.4:5685095-5685114 None:intergenic 35.0%
CTTACAACTTCAAGAATTCG+TGG + chr2.4:5685444-5685463 MS.gene31077:CDS 35.0%
CTTCACTTTCTAATGAAGCA+AGG + chr2.4:5685015-5685034 MS.gene31077:CDS 35.0%
CTTGCTTCATTAGAAAGTGA+AGG - chr2.4:5685017-5685036 None:intergenic 35.0%
GAACAGATTGCGTAATCAAA+TGG + chr2.4:5686646-5686665 MS.gene31077:intron 35.0%
GATGATGTTTCAGTCAAAGA+TGG + chr2.4:5685879-5685898 MS.gene31077:CDS 35.0%
GTCAAAACTAGAGAACAAGT+TGG - chr2.4:5686348-5686367 None:intergenic 35.0%
GTTAAGAATGCATTGGAAGA+TGG + chr2.4:5685714-5685733 MS.gene31077:CDS 35.0%
TAGAAAGTGAAGGCAATCAA+GGG - chr2.4:5685007-5685026 None:intergenic 35.0%
TAGCAAACAATTCATCTCCA+AGG - chr2.4:5685251-5685270 None:intergenic 35.0%
TAGTCGATTGCTTATTTGCA+TGG + chr2.4:5686307-5686326 MS.gene31077:CDS 35.0%
TGAGAGAGATGTGTTCAAAA+AGG + chr2.4:5686706-5686725 MS.gene31077:intron 35.0%
TTAGAAAGTGAAGGCAATCA+AGG - chr2.4:5685008-5685027 None:intergenic 35.0%
TTGCGTTATGTTAACAAGCA+TGG + chr2.4:5685324-5685343 MS.gene31077:CDS 35.0%
TTTCAGTCAAAGATGGAAGA+GGG + chr2.4:5685886-5685905 MS.gene31077:CDS 35.0%
TTTGTATCGAAGGAGGTTAA+CGG + chr2.4:5684978-5684997 MS.gene31077:CDS 35.0%
! ATGTGTGTTGGAAAGAGTTT+TGG + chr2.4:5687057-5687076 MS.gene31077:intron 35.0%
! TGAATTTTCTCCAACCACAT+TGG + chr2.4:5686406-5686425 MS.gene31077:CDS 35.0%
! TTTTCATCATGACCACGAAA+AGG - chr2.4:5685045-5685064 None:intergenic 35.0%
!! AAACTAGAGAACAAGTTGGT+TGG - chr2.4:5686344-5686363 None:intergenic 35.0%
!! AACTAGAGAACAAGTTGGTT+GGG - chr2.4:5686343-5686362 None:intergenic 35.0%
!! AAGTCTCAAGTTGACTATCA+AGG - chr2.4:5686436-5686455 None:intergenic 35.0%
!! GTCATCAATAATAGCTTTGG+TGG - chr2.4:5685229-5685248 None:intergenic 35.0%
!! TATGATTGGTACTGGTGAAT+GGG + chr2.4:5687087-5687106 MS.gene31077:CDS 35.0%
!!! CTTGTTCTCTAGTTTTGACA+AGG + chr2.4:5686349-5686368 MS.gene31077:CDS 35.0%
!!! GTTTTAGGATCGAAGATGTT+GGG + chr2.4:5686955-5686974 MS.gene31077:intron 35.0%
!!! GTTTTGGTTACTGGTATGAT+TGG + chr2.4:5687073-5687092 MS.gene31077:intron 35.0%
!!! TTGGAAAGAGTTTTGGTTAC+TGG + chr2.4:5687064-5687083 MS.gene31077:intron 35.0%
ACTTCAAGAATTCGTGGACA+AGG + chr2.4:5685450-5685469 MS.gene31077:CDS 40.0%
ATCTTCGATCCTAAAACCAG+TGG - chr2.4:5686952-5686971 None:intergenic 40.0%
CACAATCTTCATAGCAGAAG+AGG - chr2.4:5686624-5686643 None:intergenic 40.0%
CAGATTGCGTAATCAAATGG+CGG + chr2.4:5686649-5686668 MS.gene31077:intron 40.0%
CATCGTCAATGCTATGAACT+TGG + chr2.4:5686031-5686050 MS.gene31077:CDS 40.0%
GAAAGTGAAGCGAGTTGTAT+TGG + chr2.4:5685128-5685147 MS.gene31077:CDS 40.0%
GAAGATGGAGAAGTTGTTAG+TGG + chr2.4:5685729-5685748 MS.gene31077:CDS 40.0%
GAGTTCACCATCCATTCAAA+AGG + chr2.4:5685176-5685195 MS.gene31077:CDS 40.0%
GGAGAAGTTGTTAGTGGAAA+AGG + chr2.4:5685735-5685754 MS.gene31077:CDS 40.0%
GTGGTTGGAGAAAATTCACT+TGG - chr2.4:5686404-5686423 None:intergenic 40.0%
GTTACTGGTATGATTGGTAC+TGG + chr2.4:5687079-5687098 MS.gene31077:CDS 40.0%
GTTTCAGTCAAAGATGGAAG+AGG + chr2.4:5685885-5685904 MS.gene31077:CDS 40.0%
TAGAGTGGTAACAGATGTGT+TGG + chr2.4:5686979-5686998 MS.gene31077:intron 40.0%
TCAAGGAATACCAATGTGGT+TGG - chr2.4:5686419-5686438 None:intergenic 40.0%
TGGCATTAGCATTCCAAACA+TGG + chr2.4:5686142-5686161 MS.gene31077:CDS 40.0%
TTCAGTCAAAGATGGAAGAG+GGG + chr2.4:5685887-5685906 MS.gene31077:CDS 40.0%
TTTCGTGGACAATCAAAACG+TGG + chr2.4:5686176-5686195 MS.gene31077:CDS 40.0%
! AAACACTAAGAGATGATGGC+TGG + chr2.4:5686078-5686097 MS.gene31077:CDS 40.0%
! AACACTAAGAGATGATGGCT+GGG + chr2.4:5686079-5686098 MS.gene31077:CDS 40.0%
! AACATGCAAGGGCAATTTTC+TGG + chr2.4:5685489-5685508 MS.gene31077:CDS 40.0%
! CAACTCGTGATTTGTATCGA+AGG + chr2.4:5684968-5684987 MS.gene31077:CDS 40.0%
! GTGAATGGGAAATTGGTGAT+TGG + chr2.4:5687101-5687120 MS.gene31077:CDS 40.0%
!! GTATGATTGGTACTGGTGAA+TGG + chr2.4:5687086-5687105 MS.gene31077:CDS 40.0%
!!! GGTTTTAGGATCGAAGATGT+TGG + chr2.4:5686954-5686973 MS.gene31077:intron 40.0%
ACAGCTTCAAACCTCACAAC+AGG - chr2.4:5687130-5687149 None:intergenic 45.0%
ATTCGTGGACAAGGTTACGA+TGG + chr2.4:5685459-5685478 MS.gene31077:CDS 45.0%
GTGATTGGATTCCTGTTGTG+AGG + chr2.4:5687116-5687135 MS.gene31077:CDS 45.0%
GTTGTGATTGCTTTGTGCGA+TGG + chr2.4:5687021-5687040 MS.gene31077:intron 45.0%
TGATGGCTGGGAACCTTTAT+TGG + chr2.4:5686091-5686110 MS.gene31077:CDS 45.0%
TTCCAAAGTGGGAACTCCAA+CGG - chr2.4:5685800-5685819 None:intergenic 45.0%
! AAGCAAGGATTGCCTTTTCG+TGG + chr2.4:5685030-5685049 MS.gene31077:CDS 45.0%
! ATGGTGCTAGCAACATGCAA+GGG + chr2.4:5685478-5685497 MS.gene31077:CDS 45.0%
! CTCGTGATTTGTATCGAAGG+AGG + chr2.4:5684971-5684990 MS.gene31077:CDS 45.0%
! TCGAAGATGTTGGGTTAGAG+TGG + chr2.4:5686964-5686983 MS.gene31077:intron 45.0%
!! GAGTTCCCACTTTGGAACTT+TGG + chr2.4:5685803-5685822 MS.gene31077:CDS 45.0%
!! GGTACTGGTGAATGGGAAAT+TGG + chr2.4:5687094-5687113 MS.gene31077:CDS 45.0%
AGCAGAAGAGGCTCGTTCAA+CGG - chr2.4:5686612-5686631 None:intergenic 50.0%
CAACACACATAACCACAGCC+AGG - chr2.4:5687047-5687066 None:intergenic 50.0%
CGTGGACAATCAAAACGTGG+AGG + chr2.4:5686179-5686198 MS.gene31077:CDS 50.0%
CTCTACAATTGCTCCCTACG+AGG - chr2.4:5686773-5686792 None:intergenic 50.0%
CTGGCTGTGGTTATGTGTGT+TGG + chr2.4:5687045-5687064 MS.gene31077:intron 50.0%
CTGGGAACCTTTATTGGAGG+AGG + chr2.4:5686097-5686116 MS.gene31077:CDS 50.0%
GATGGAAGAGGGGAAGCAAA+TGG + chr2.4:5685897-5685916 MS.gene31077:CDS 50.0%
TCAGAAGATGGCACCTCGTA+GGG + chr2.4:5686757-5686776 MS.gene31077:intron 50.0%
TCCAAAGTGGGAACTCCAAC+GGG - chr2.4:5685799-5685818 None:intergenic 50.0%
TGGCTGGGAACCTTTATTGG+AGG + chr2.4:5686094-5686113 MS.gene31077:CDS 50.0%
TTCAGAAGATGGCACCTCGT+AGG + chr2.4:5686756-5686775 MS.gene31077:intron 50.0%
! AGCTTTGGTGGTTTCCAGAG+AGG - chr2.4:5685217-5685236 None:intergenic 50.0%
! GATGGTGCTAGCAACATGCA+AGG + chr2.4:5685477-5685496 MS.gene31077:CDS 50.0%
! TCAACGGTTGCTGTTGCAAC+AGG - chr2.4:5686596-5686615 None:intergenic 50.0%
AAGTATGAACCCCCTGGTCC+AGG + chr2.4:5686914-5686933 MS.gene31077:intron 55.0%
ACCCGTTGGAGTTCCCACTT+TGG + chr2.4:5685795-5685814 MS.gene31077:CDS 55.0%
CTAAAACCAGTGGCGTTGCC+AGG - chr2.4:5686942-5686961 None:intergenic 55.0%
GATTGCTTTGTGCGATGGCC+TGG + chr2.4:5687026-5687045 MS.gene31077:intron 55.0%
GTTCGCAAGTATGAACCCCC+TGG + chr2.4:5686908-5686927 MS.gene31077:intron 55.0%
! AACGTGCTGCTGATACCCGT+TGG + chr2.4:5685781-5685800 MS.gene31077:CDS 55.0%
!!! CTGGCAACGCCACTGGTTTT+AGG + chr2.4:5686940-5686959 MS.gene31077:intron 55.0%
GTTGCCAGGAACCTGGACCA+GGG - chr2.4:5686928-5686947 None:intergenic 60.0%
TTGCCAGGAACCTGGACCAG+GGG - chr2.4:5686927-5686946 None:intergenic 60.0%
TTTGTGCGATGGCCTGGCTG+TGG + chr2.4:5687032-5687051 MS.gene31077:intron 60.0%
AACCCCCTGGTCCAGGTTCC+TGG + chr2.4:5686921-5686940 MS.gene31077:intron 65.0%
CAGGTTCCTGGCAACGCCAC+TGG + chr2.4:5686933-5686952 MS.gene31077:intron 65.0%
CAGTGGCGTTGCCAGGAACC+TGG - chr2.4:5686935-5686954 None:intergenic 65.0%
CGTTGCCAGGAACCTGGACC+AGG - chr2.4:5686929-5686948 None:intergenic 65.0%
TGCCAGGAACCTGGACCAGG+GGG - chr2.4:5686926-5686945 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 5684919 5687171 5684919 ID=MS.gene31077
chr2.4 mRNA 5684919 5687171 5684919 ID=MS.gene31077.t1;Parent=MS.gene31077
chr2.4 exon 5684919 5686470 5684919 ID=MS.gene31077.t1.exon1;Parent=MS.gene31077.t1
chr2.4 CDS 5684919 5686470 5684919 ID=cds.MS.gene31077.t1;Parent=MS.gene31077.t1
chr2.4 exon 5687074 5687171 5687074 ID=MS.gene31077.t1.exon2;Parent=MS.gene31077.t1
chr2.4 CDS 5687074 5687171 5687074 ID=cds.MS.gene31077.t1;Parent=MS.gene31077.t1
Gene Sequence

>MS.gene31077

ATGAAACAAGATCAACATATTGAAGTTGTGTTGTCTAAGCAGTCTGAAACAACTCGTGATTTGTATCGAAGGAGGTTAACGGCTTCCCTTGATTGCCTTCACTTTCTAATGAAGCAAGGATTGCCTTTTCGTGGTCATGATGAAAAAATAGAATCTTCTAATCAAGGGAACTTCCTTGAAATGCTTAGATGGTATGCTGACAAAAAAAAGAAAGTGAAGCGAGTTGTATTGGAAAATGCTCCTGAAAATGATAAAATGAGTTCACCATCCATTCAAAAGGAAATTGTTAATGCTTCCTCTCTGGAAACCACCAAAGCTATTATTGATGACCTTGGAGATGAATTGTTTGCTATTCTTGTTGACGAATCAAGAGACATATCTGATAGTGAACAAATGGCTGTTGTTTTGCGTTATGTTAACAAGCATGGAAGTATTGTTGAACGATTTTTGGGTATTGTTCATGTTAAACTTACAACAGCCATATCATTAAAAATGGCCATAGATGAACTATTTTGCAAACATGGACTTACAACTTCAAGAATTCGTGGACAAGGTTACGATGGTGCTAGCAACATGCAAGGGCAATTTTCTGGTCTCAAAACTTTGATCTTAAAGGAAAGTCCATGTGCATTTTATGTACACTGTTTTGCTCATCAATTACAACTTGCATTGGTTGCTATTTCCAGAGATCACCTTCTAGTTAATTCTCTTTTTAGCACAATATCCACTTTAACAAATGTTGTTCGAGGATCTTGCAAACGTACTGACATGCTTCACGAACAACAAAGAATCAATGTTAAGAATGCATTGGAAGATGGAGAAGTTGTTAGTGGAAAAGGTTTGAATCAAGCAAGAAATATGAAACGTGCTGCTGATACCCGTTGGAGTTCCCACTTTGGAACTTTGGTGAATTTGATATTGATGTATAGTTCTGTAATTGATGTTCTTAAAATGTTGAAAGATGATGTTTCAGTCAAAGATGGAAGAGGGGAAGCAAATGGTCTTTTACTTTTAATGAATAATTTTGATTTTGCTATCACATTGCATTTGATGAAAAAAGTCTTAGGTATTTCAAATGATTTGTCACAAGCATTGCAGAGAAAAGATCAAGACATCGTCAATGCTATGAACTTGGTTAGCATTACAAAAGAGTTGTTACAAACACTAAGAGATGATGGCTGGGAACCTTTATTGGAGGAGGTAACTTTATTTTGCAACAAGCATGGCATTAGCATTCCAAACATGGATGATATATACTTTCGTGGACAATCAAAACGTGGAGGTAATGTTGATTCTATCACAATAGAGAGTCATTACCGCATTGAATTATTTTATACTGTTGTGGATATGCAGCTTCAAGAACTTAATAATCGTTTTAATGAGACAAATAGTCGATTGCTTATTTGCATGGAGTGTTTGAGCCCAACCAACTTGTTCTCTAGTTTTGACAAGGCAAAGTTGATTGAATTTGCCAAGTTTTATCCAAGTGAATTTTCTCCAACCACATTGGTATTCCTTGATAGTCAACTTGAGACTTACATCTCTGATATGCGTAAGAGTGTAGAATTTGCATCTTTGAAAGGAATAAGTGATCTATCAAAAAAACTGGTTGCAACTAAAAGGCATATTACTTATTTGTTCGTCTACCGACTTTTGAAGTTAGCAATGATTTTACCTGTTGCAACAGCAACCGTTGAACGAGCCTCTTCTGCTATGAAGATTGTGAAGAACAGATTGCGTAATCAAATGGCGGATGATTTTCTAAACGATTGTCTTGTGACTTACATTGAGAGAGATGTGTTCAAAAAGGTTGATAAGGAGTTGATTATTCAACGATTTCAGAAGATGGCACCTCGTAGGGAGCAATTGTAGAGTATGCATATGAAGTATTTTGACTACAAGGTACACTGAATGCACTGTAATTTTTTGAATATATATTATTATAATTATTAGTAATTAAATATATTATTATAATTATTAGTAATTAAAGTTCGCAAGTATGAACCCCCTGGTCCAGGTTCCTGGCAACGCCACTGGTTTTAGGATCGAAGATGTTGGGTTAGAGTGGTAACAGATGTGTTGGTTTTGATTTAACTGACTGTGTTGTGATTGCTTTGTGCGATGGCCTGGCTGTGGTTATGTGTGTTGGAAAGAGTTTTGGTTACTGGTATGATTGGTACTGGTGAATGGGAAATTGGTGATTGGATTCCTGTTGTGAGGTTTGAAGCTGTGCTTGTGTGTTACTGTGTGTGA
Protein sequence

>MS.gene31077.t1

MKQDQHIEVVLSKQSETTRDLYRRRLTASLDCLHFLMKQGLPFRGHDEKIESSNQGNFLEMLRWYADKKKKVKRVVLENAPENDKMSSPSIQKEIVNASSLETTKAIIDDLGDELFAILVDESRDISDSEQMAVVLRYVNKHGSIVERFLGIVHVKLTTAISLKMAIDELFCKHGLTTSRIRGQGYDGASNMQGQFSGLKTLILKESPCAFYVHCFAHQLQLALVAISRDHLLVNSLFSTISTLTNVVRGSCKRTDMLHEQQRINVKNALEDGEVVSGKGLNQARNMKRAADTRWSSHFGTLVNLILMYSSVIDVLKMLKDDVSVKDGRGEANGLLLLMNNFDFAITLHLMKKVLGISNDLSQALQRKDQDIVNAMNLVSITKELLQTLRDDGWEPLLEEVTLFCNKHGISIPNMDDIYFRGQSKRGGNVDSITIESHYRIELFYTVVDMQLQELNNRFNETNSRLLICMECLSPTNLFSSFDKAKLIEFAKFYPSEFSPTTLVFLDSQLETYISDMLLVTGMIGTGEWEIGDWIPVVRFEAVLVCYCV