Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05329.t1 | XP_024627463.1 | 49.4 | 271 | 33 | 1 | 55 | 221 | 420 | 690 | 6.50E-28 | 134.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05329.t1 | A0A072TT74 | 47.2 | 271 | 23 | 2 | 55 | 221 | 441 | 695 | 9.2e-24 | 120.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene05329 | 0.853358 | 2.52E-61 | -1.69E-46 |
| MS.gene05329 | MS.gene05669 | 0.802805 | 4.71E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene059458 | 0.800545 | 1.37E-48 | -1.69E-46 |
| MS.gene05329 | MS.gene059460 | 0.806736 | 7.12E-50 | -1.69E-46 |
| MS.gene05329 | MS.gene060134 | 0.812169 | 4.85E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene060257 | 0.803383 | 3.58E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene06269 | 0.811326 | 7.41E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene064718 | 0.83137 | 1.73E-55 | -1.69E-46 |
| MS.gene05329 | MS.gene065039 | 0.80917 | 2.16E-50 | -1.69E-46 |
| MS.gene05329 | MS.gene068494 | 0.809997 | 1.43E-50 | -1.69E-46 |
| MS.gene05329 | MS.gene069275 | 0.826595 | 2.49E-54 | -1.69E-46 |
| MS.gene05329 | MS.gene070467 | 0.802678 | 5.01E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene071806 | 0.821834 | 3.27E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene22768 | 0.823074 | 1.68E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene24211 | 0.802365 | 5.81E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene25358 | 0.822739 | 2.02E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene27127 | 0.81053 | 1.10E-50 | -1.69E-46 |
| MS.gene05329 | MS.gene29654 | 0.813087 | 3.06E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene30580 | 0.806851 | 6.73E-50 | -1.69E-46 |
| MS.gene05329 | MS.gene31077 | 0.805549 | 1.27E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene38134 | 0.811723 | 6.07E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene38659 | 0.802459 | 5.55E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene38850 | 0.812409 | 4.30E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene41990 | 0.828808 | 7.32E-55 | -1.69E-46 |
| MS.gene05329 | MS.gene42887 | 0.820874 | 5.45E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene42891 | 0.821538 | 3.83E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene47552 | 0.824476 | 7.91E-54 | -1.69E-46 |
| MS.gene05329 | MS.gene48858 | 0.811631 | 6.36E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene49642 | 0.838748 | 2.39E-57 | -1.69E-46 |
| MS.gene05329 | MS.gene49643 | 0.821736 | 3.45E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene50274 | 0.801622 | 8.26E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene50323 | 0.812217 | 4.74E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene50865 | 0.843752 | 1.15E-58 | -1.69E-46 |
| MS.gene05329 | MS.gene51596 | 0.801744 | 7.79E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene51597 | 0.816123 | 6.50E-52 | -1.69E-46 |
| MS.gene05329 | MS.gene53827 | 0.81331 | 2.73E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene55257 | 0.822674 | 2.09E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene58485 | 0.810188 | 1.31E-50 | -1.69E-46 |
| MS.gene05329 | MS.gene61388 | 0.81932 | 1.24E-52 | -1.69E-46 |
| MS.gene05329 | MS.gene61393 | 0.830557 | 2.75E-55 | -1.69E-46 |
| MS.gene05329 | MS.gene61551 | 0.811995 | 5.30E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene61804 | 0.810605 | 1.06E-50 | -1.69E-46 |
| MS.gene05329 | MS.gene61898 | 0.825142 | 5.51E-54 | -1.69E-46 |
| MS.gene05329 | MS.gene62016 | 0.80006 | 1.72E-48 | -1.69E-46 |
| MS.gene05329 | MS.gene62738 | 0.810449 | 1.15E-50 | -1.69E-46 |
| MS.gene05329 | MS.gene63141 | 0.846514 | 2.07E-59 | -1.69E-46 |
| MS.gene05329 | MS.gene63142 | 0.821849 | 3.24E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene63897 | 0.846058 | 2.76E-59 | -1.69E-46 |
| MS.gene05329 | MS.gene65003 | 0.83074 | 2.48E-55 | -1.69E-46 |
| MS.gene05329 | MS.gene66412 | 0.80141 | 9.12E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene73074 | 0.817259 | 3.62E-52 | -1.69E-46 |
| MS.gene05329 | MS.gene73540 | 0.813393 | 2.62E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene74641 | 0.806404 | 8.36E-50 | -1.69E-46 |
| MS.gene05329 | MS.gene75887 | 0.836411 | 9.51E-57 | -1.69E-46 |
| MS.gene05329 | MS.gene76061 | 0.803823 | 2.90E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene76612 | 0.810794 | 9.66E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene76755 | 0.82013 | 8.07E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene76985 | 0.808401 | 3.15E-50 | -1.69E-46 |
| MS.gene05329 | MS.gene78362 | 0.831931 | 1.26E-55 | -1.69E-46 |
| MS.gene05329 | MS.gene78647 | 0.81256 | 3.99E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene79603 | 0.811947 | 5.43E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene79824 | 0.805148 | 1.54E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene80426 | 0.809139 | 2.19E-50 | -1.69E-46 |
| MS.gene05329 | MS.gene80427 | 0.804397 | 2.20E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene80877 | 0.825426 | 4.72E-54 | -1.69E-46 |
| MS.gene05329 | MS.gene81366 | 0.83833 | 3.07E-57 | -1.69E-46 |
| MS.gene05329 | MS.gene81466 | 0.821798 | 3.33E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene82682 | 0.814124 | 1.81E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene84994 | 0.851746 | 7.26E-61 | -1.69E-46 |
| MS.gene05329 | MS.gene88527 | 0.830829 | 2.36E-55 | -1.69E-46 |
| MS.gene05329 | MS.gene88533 | 0.810913 | 9.10E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene88539 | 0.819272 | 1.27E-52 | -1.69E-46 |
| MS.gene05329 | MS.gene88548 | 0.800624 | 1.32E-48 | -1.69E-46 |
| MS.gene05329 | MS.gene89666 | 0.821712 | 3.49E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene90651 | 0.833688 | 4.62E-56 | -1.69E-46 |
| MS.gene05329 | MS.gene91008 | 0.839762 | 1.31E-57 | -1.69E-46 |
| MS.gene05329 | MS.gene91451 | 0.813433 | 2.57E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene92567 | 0.839365 | 1.66E-57 | -1.69E-46 |
| MS.gene05329 | MS.gene93902 | 0.81035 | 1.20E-50 | -1.69E-46 |
| MS.gene05329 | MS.gene96613 | 0.84023 | 9.86E-58 | -1.69E-46 |
| MS.gene05329 | MS.gene97534 | 0.817477 | 3.23E-52 | -1.69E-46 |
| MS.gene05329 | MS.gene98673 | 0.823067 | 1.69E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05329.t1 | MTR_8g089030 | 74.436 | 133 | 18 | 1 | 55 | 187 | 441 | 557 | 1.04e-48 | 169 |
| MS.gene05329.t1 | MTR_8g089030 | 69.600 | 125 | 30 | 3 | 56 | 178 | 7 | 125 | 2.35e-29 | 115 |
| MS.gene05329.t1 | MTR_8g089030 | 74.436 | 133 | 18 | 1 | 55 | 187 | 441 | 557 | 2.59e-48 | 169 |
| MS.gene05329.t1 | MTR_8g089030 | 69.600 | 125 | 30 | 3 | 56 | 178 | 7 | 125 | 2.20e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCGCATGCCTTTGAAAA+AGG | 0.195224 | 6.3:-74976835 | MS.gene05329:CDS |
| GAAAAGAAGTCCAAGGAAAA+TGG | 0.277249 | 6.3:-74977943 | MS.gene05329:CDS |
| TCAGGTACCTTCCGCTGTTT+TGG | 0.332005 | 6.3:+74978265 | None:intergenic |
| TAAAGTAGAATTGCAGATTC+AGG | 0.334124 | 6.3:-74976788 | MS.gene05329:CDS |
| TGAATCGATTGCAGCAGATT+TGG | 0.340536 | 6.3:-74977710 | MS.gene05329:CDS |
| CAAGGAAAATGGAAAGAAAA+AGG | 0.341295 | 6.3:-74977932 | MS.gene05329:intron |
| AATTGCAGATTCAGGTGTTC+AGG | 0.361695 | 6.3:-74976780 | MS.gene05329:CDS |
| TCGGAGGGTCCCGGTCAATA+TGG | 0.407666 | 6.3:-74978385 | MS.gene05329:CDS |
| CTTCGTTTCTGAAACTCACC+TGG | 0.414288 | 6.3:-74976872 | MS.gene05329:CDS |
| CTTGTCACCGATGGTGGTTT+CGG | 0.429012 | 6.3:-74978355 | MS.gene05329:CDS |
| TGTTGCTTTGTATGTGGAGG+TGG | 0.452183 | 6.3:-74977488 | MS.gene05329:CDS |
| TGCTTTGTATGTGGAGGTGG+AGG | 0.488006 | 6.3:-74977485 | MS.gene05329:CDS |
| CACATGCAACATACTCCTCT+TGG | 0.493606 | 6.3:+74977560 | None:intergenic |
| AAATGTTGTTGCTTTGTATG+TGG | 0.506159 | 6.3:-74977494 | MS.gene05329:CDS |
| AAGCGGCATACCATATTGAC+CGG | 0.513225 | 6.3:+74978375 | None:intergenic |
| GTGGAGGTGGAGGAAGAAAG+TGG | 0.554282 | 6.3:-74977475 | MS.gene05329:intron |
| GTCACCGATGGTGGTTTCGG+TGG | 0.558502 | 6.3:-74978352 | MS.gene05329:CDS |
| GAAGGCAGATCGGAGGGTCC+CGG | 0.561386 | 6.3:-74978394 | MS.gene05329:CDS |
| GAAGATTGATGAATTAATTG+CGG | 0.572547 | 6.3:-74977587 | MS.gene05329:CDS |
| AACTTCTAACGAAGGCAGAT+CGG | 0.583266 | 6.3:-74978404 | MS.gene05329:CDS |
| TGGATGCAGGAATAAAATTG+AGG | 0.584634 | 6.3:-74977998 | MS.gene05329:intron |
| TTCGTTTCTGAAACTCACCT+GGG | 0.586604 | 6.3:-74976871 | MS.gene05329:CDS |
| CCCTAAACCAAAACAGCGGA+AGG | 0.588032 | 6.3:-74978272 | MS.gene05329:intron |
| GATTGCAGCAGATTTGGAAG+AGG | 0.590467 | 6.3:-74977704 | MS.gene05329:CDS |
| GATCAATGGGTCACTGCTCG+CGG | 0.590726 | 6.3:-74978304 | MS.gene05329:CDS |
| ATGCCGCTTGTCACCGATGG+TGG | 0.604574 | 6.3:-74978361 | MS.gene05329:CDS |
| TCTAACGAAGGCAGATCGGA+GGG | 0.614540 | 6.3:-74978400 | MS.gene05329:CDS |
| TCAAACTGAAAAGAAGTCCA+AGG | 0.615360 | 6.3:-74977950 | MS.gene05329:CDS |
| TTCTAACGAAGGCAGATCGG+AGG | 0.618327 | 6.3:-74978401 | MS.gene05329:CDS |
| GGTATGCCGCTTGTCACCGA+TGG | 0.619202 | 6.3:-74978364 | MS.gene05329:CDS |
| AAACCACCATCGGTGACAAG+CGG | 0.633991 | 6.3:+74978358 | None:intergenic |
| GGTGAGTTTCAGAAACGAAG+TGG | 0.637187 | 6.3:+74976875 | None:intergenic |
| TGTTGTTGCTTTGTATGTGG+AGG | 0.643724 | 6.3:-74977491 | MS.gene05329:CDS |
| TCGTTTCTGAAACTCACCTG+GGG | 0.644745 | 6.3:-74976870 | MS.gene05329:CDS |
| GACGGAGAAACTTCTAACGA+AGG | 0.664980 | 6.3:-74978412 | MS.gene05329:CDS |
| CGTTTCTGAAACTCACCTGG+GGG | 0.668164 | 6.3:-74976869 | MS.gene05329:CDS |
| AGCGGCATACCATATTGACC+GGG | 0.672269 | 6.3:+74978376 | None:intergenic |
| ACTGCCACCGAAACCACCAT+CGG | 0.675641 | 6.3:+74978348 | None:intergenic |
| ATTAATTGCGGAACACCAAG+AGG | 0.681739 | 6.3:-74977575 | MS.gene05329:CDS |
| AGCGGTCACTGAATTGTCCG+CGG | 0.686314 | 6.3:-74977527 | MS.gene05329:CDS |
| CAATGGGTCACTGCTCGCGG+CGG | 0.704904 | 6.3:-74978301 | MS.gene05329:CDS |
| GCGTGCCCTAGAAAAGCATG+AGG | 0.715041 | 6.3:-74977632 | MS.gene05329:CDS |
| GAAACCCTAAACCAAAACAG+CGG | 0.750388 | 6.3:-74978276 | MS.gene05329:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTATATAAAAAAACAT+TGG | - | chr6.3:74977897-74977916 | MS.gene05329:intron | 10.0% |
| !! | AATCTCATGAAAATAAAATA+AGG | - | chr6.3:74977025-74977044 | MS.gene05329:intron | 15.0% |
| !! | TAATAAACATATATGTATGA+CGG | + | chr6.3:74977286-74977305 | None:intergenic | 15.0% |
| !! | TGATTATTCTCTATTTATTA+TGG | + | chr6.3:74977063-74977082 | None:intergenic | 15.0% |
| !!! | TGAAAAAAATTATGTTTTGT+AGG | - | chr6.3:74977323-74977342 | MS.gene05329:intron | 15.0% |
| !! | AAATAAGCATGAGTATATTA+TGG | + | chr6.3:74977774-74977793 | None:intergenic | 20.0% |
| !! | TCATTCTAAATTATTCAAAC+TGG | + | chr6.3:74976968-74976987 | None:intergenic | 20.0% |
| !! | TGATATTTCGTAATGAAATT+CGG | - | chr6.3:74977827-74977846 | MS.gene05329:CDS | 20.0% |
| !!! | ATTATTTATTTAATGGATGC+AGG | - | chr6.3:74977180-74977199 | MS.gene05329:intron | 20.0% |
| !!! | TTTATCAATTTTCTTTGGTT+TGG | + | chr6.3:74977349-74977368 | None:intergenic | 20.0% |
| ! | AAATACACTAAATACGGTTT+CGG | - | chr6.3:74977927-74977946 | MS.gene05329:intron | 25.0% |
| ! | CACACTAAATACACTAAATA+CGG | - | chr6.3:74977921-74977940 | MS.gene05329:intron | 25.0% |
| ! | GAAGATTGATGAATTAATTG+CGG | - | chr6.3:74977604-74977623 | MS.gene05329:CDS | 25.0% |
| ! | GATATTTCGTAATGAAATTC+GGG | - | chr6.3:74977828-74977847 | MS.gene05329:CDS | 25.0% |
| !! | CAAACAGTAAAACTTGATTT+TGG | - | chr6.3:74977387-74977406 | MS.gene05329:intron | 25.0% |
| !! | GCACATTTATCAATTTTCTT+TGG | + | chr6.3:74977354-74977373 | None:intergenic | 25.0% |
| AATACACTAAATACGGTTTC+GGG | - | chr6.3:74977928-74977947 | MS.gene05329:intron | 30.0% | |
| ACCATCTTCAACAATGTTAT+GGG | + | chr6.3:74977866-74977885 | None:intergenic | 30.0% | |
| AGTGCATAAAAGTTCAACAT+TGG | + | chr6.3:74978149-74978168 | None:intergenic | 30.0% | |
| CAAGGAAAATGGAAAGAAAA+AGG | - | chr6.3:74977259-74977278 | MS.gene05329:intron | 30.0% | |
| TAAAGTAGAATTGCAGATTC+AGG | - | chr6.3:74978403-74978422 | MS.gene05329:CDS | 30.0% | |
| TAATAACTCAAATTGCAACG+AGG | + | chr6.3:74978105-74978124 | None:intergenic | 30.0% | |
| TACTTACTAGAAACTGTTTG+CGG | - | chr6.3:74977444-74977463 | MS.gene05329:intron | 30.0% | |
| ! | AATAACCTCATGCTTTTCTA+GGG | + | chr6.3:74977567-74977586 | None:intergenic | 30.0% |
| ! | CTTTTTCTTTCCATTTTCCT+TGG | + | chr6.3:74977261-74977280 | None:intergenic | 30.0% |
| ! | TAATGAAATTCGGGATCTTT+TGG | - | chr6.3:74977837-74977856 | MS.gene05329:CDS | 30.0% |
| ! | TTGAACTTGGAGAGTATAAA+TGG | - | chr6.3:74977968-74977987 | MS.gene05329:CDS | 30.0% |
| !! | AAATGTTGTTGCTTTGTATG+TGG | - | chr6.3:74977697-74977716 | MS.gene05329:CDS | 30.0% |
| !!! | GTCAAGAAAACCTTTTTCAA+AGG | + | chr6.3:74978369-74978388 | None:intergenic | 30.0% |
| !!! | TGATTTTGGCTGTAAATAGA+TGG | - | chr6.3:74977401-74977420 | MS.gene05329:intron | 30.0% |
| AAAGATTGATATGCCAATGC+AGG | - | chr6.3:74978054-74978073 | MS.gene05329:intron | 35.0% | |
| ACCGCGTTTAAAAAGATCAA+TGG | - | chr6.3:74976873-74976892 | MS.gene05329:CDS | 35.0% | |
| CACCATCTTCAACAATGTTA+TGG | + | chr6.3:74977867-74977886 | None:intergenic | 35.0% | |
| CCGCGTTTAAAAAGATCAAT+GGG | - | chr6.3:74976874-74976893 | MS.gene05329:CDS | 35.0% | |
| GAAAAGAAGTCCAAGGAAAA+TGG | - | chr6.3:74977248-74977267 | MS.gene05329:intron | 35.0% | |
| TCAAACTGAAAAGAAGTCCA+AGG | - | chr6.3:74977241-74977260 | MS.gene05329:intron | 35.0% | |
| TCCCATAACATTGTTGAAGA+TGG | - | chr6.3:74977862-74977881 | MS.gene05329:intron | 35.0% | |
| TGCATGTGCATTGAAAAAAG+CGG | - | chr6.3:74977646-74977665 | MS.gene05329:CDS | 35.0% | |
| TGGATGCAGGAATAAAATTG+AGG | - | chr6.3:74977193-74977212 | MS.gene05329:intron | 35.0% | |
| ! | CAATAACCTCATGCTTTTCT+AGG | + | chr6.3:74977568-74977587 | None:intergenic | 35.0% |
| ! | CCCATTGATCTTTTTAAACG+CGG | + | chr6.3:74976877-74976896 | None:intergenic | 35.0% |
| AACTTCTAACGAAGGCAGAT+CGG | - | chr6.3:74976787-74976806 | MS.gene05329:CDS | 40.0% | |
| AATTGCAGATTCAGGTGTTC+AGG | - | chr6.3:74978411-74978430 | MS.gene05329:CDS | 40.0% | |
| ATTAATTGCGGAACACCAAG+AGG | - | chr6.3:74977616-74977635 | MS.gene05329:CDS | 40.0% | |
| GAAACCCTAAACCAAAACAG+CGG | - | chr6.3:74976915-74976934 | MS.gene05329:intron | 40.0% | |
| GACTCTTCACTCATTGAACT+TGG | - | chr6.3:74977955-74977974 | MS.gene05329:CDS | 40.0% | |
| TAATTAACCCCCTTGACTAC+CGG | - | chr6.3:74978183-74978202 | MS.gene05329:intron | 40.0% | |
| TGAATCGATTGCAGCAGATT+TGG | - | chr6.3:74977481-74977500 | MS.gene05329:CDS | 40.0% | |
| TGTGATACAATAGCATCGCT+AGG | - | chr6.3:74977118-74977137 | MS.gene05329:intron | 40.0% | |
| ! | AAAAGGTTTTCTTGACGCTG+AGG | - | chr6.3:74978373-74978392 | MS.gene05329:CDS | 40.0% |
| ! | AAAGGTTTTCTTGACGCTGA+GGG | - | chr6.3:74978374-74978393 | MS.gene05329:CDS | 40.0% |
| ! | AACATTTTCTTGTGCTTCCG+CGG | + | chr6.3:74977684-74977703 | None:intergenic | 40.0% |
| ! | GGAAGAGGATACATCTTTTC+TGG | - | chr6.3:74977502-74977521 | MS.gene05329:CDS | 40.0% |
| !! | TGTTGTTGCTTTGTATGTGG+AGG | - | chr6.3:74977700-74977719 | MS.gene05329:CDS | 40.0% |
| !! | TTCGTTTCTGAAACTCACCT+GGG | - | chr6.3:74978320-74978339 | MS.gene05329:CDS | 40.0% |
| !! | TTTGGCTTGATATCCATTGC+AGG | - | chr6.3:74977143-74977162 | MS.gene05329:intron | 40.0% |
| AAGCGGCATACCATATTGAC+CGG | + | chr6.3:74976819-74976838 | None:intergenic | 45.0% | |
| AATCAGTTAGCCGGTAGTCA+AGG | + | chr6.3:74978196-74978215 | None:intergenic | 45.0% | |
| ACTTTCATGGTTCGTCGGAT+GGG | - | chr6.3:74978077-74978096 | MS.gene05329:intron | 45.0% | |
| AGAATATGACCAGCCTGCAA+TGG | + | chr6.3:74977159-74977178 | None:intergenic | 45.0% | |
| ATCAGTTAGCCGGTAGTCAA+GGG | + | chr6.3:74978195-74978214 | None:intergenic | 45.0% | |
| ATGCCAATGCAGGACTTTCA+TGG | - | chr6.3:74978064-74978083 | MS.gene05329:intron | 45.0% | |
| CAAGATCAAATACATCCCCC+AGG | + | chr6.3:74978340-74978359 | None:intergenic | 45.0% | |
| CACATGCAACATACTCCTCT+TGG | + | chr6.3:74977634-74977653 | None:intergenic | 45.0% | |
| GAACCATGAAAGTCCTGCAT+TGG | + | chr6.3:74978070-74978089 | None:intergenic | 45.0% | |
| GACGGAGAAACTTCTAACGA+AGG | - | chr6.3:74976779-74976798 | MS.gene05329:CDS | 45.0% | |
| GATTGCAGCAGATTTGGAAG+AGG | - | chr6.3:74977487-74977506 | MS.gene05329:CDS | 45.0% | |
| GGTGAGTTTCAGAAACGAAG+TGG | + | chr6.3:74978319-74978338 | None:intergenic | 45.0% | |
| TGCCTGAACAATCAGTTAGC+CGG | + | chr6.3:74978205-74978224 | None:intergenic | 45.0% | |
| ! | CAATAGCATCGCTAGGCTTT+TGG | - | chr6.3:74977125-74977144 | MS.gene05329:intron | 45.0% |
| ! | CTTGCGCATGCCTTTGAAAA+AGG | - | chr6.3:74978356-74978375 | MS.gene05329:CDS | 45.0% |
| ! | TACCGGCTAACTGATTGTTC+AGG | - | chr6.3:74978200-74978219 | MS.gene05329:intron | 45.0% |
| !! | CTTCGTTTCTGAAACTCACC+TGG | - | chr6.3:74978319-74978338 | MS.gene05329:CDS | 45.0% |
| !! | TCGTTTCTGAAACTCACCTG+GGG | - | chr6.3:74978321-74978340 | MS.gene05329:CDS | 45.0% |
| !! | TGTTGCTTTGTATGTGGAGG+TGG | - | chr6.3:74977703-74977722 | MS.gene05329:CDS | 45.0% |
| !!! | ACCTTCCGCTGTTTTGGTTT+AGG | + | chr6.3:74976923-74976942 | None:intergenic | 45.0% |
| !!! | CCTTCCGCTGTTTTGGTTTA+GGG | + | chr6.3:74976922-74976941 | None:intergenic | 45.0% |
| !! | TATTCTAATTATTTATTTAA+TGG | - | chr6.3:74977173-74977192 | MS.gene05329:intron | 5.0% |
| AAACCACCATCGGTGACAAG+CGG | + | chr6.3:74976836-74976855 | None:intergenic | 50.0% | |
| AAACTGGTACCAGAGCTCTC+TGG | + | chr6.3:74976952-74976971 | None:intergenic | 50.0% | |
| AGCGGCATACCATATTGACC+GGG | + | chr6.3:74976818-74976837 | None:intergenic | 50.0% | |
| CCCTAAACCAAAACAGCGGA+AGG | - | chr6.3:74976919-74976938 | MS.gene05329:intron | 50.0% | |
| GACTTTCATGGTTCGTCGGA+TGG | - | chr6.3:74978076-74978095 | MS.gene05329:intron | 50.0% | |
| GCAGGACTTTCATGGTTCGT+CGG | - | chr6.3:74978072-74978091 | MS.gene05329:intron | 50.0% | |
| GCTTGATATCCATTGCAGGC+TGG | - | chr6.3:74977147-74977166 | MS.gene05329:intron | 50.0% | |
| GGCTAACTGATTGTTCAGGC+AGG | - | chr6.3:74978204-74978223 | MS.gene05329:intron | 50.0% | |
| TCAGTTAGCCGGTAGTCAAG+GGG | + | chr6.3:74978194-74978213 | None:intergenic | 50.0% | |
| TCTAACGAAGGCAGATCGGA+GGG | - | chr6.3:74976791-74976810 | MS.gene05329:CDS | 50.0% | |
| TCTCTCAAATCTCAGTGCGC+AGG | - | chr6.3:74977797-74977816 | MS.gene05329:intron | 50.0% | |
| TGCGCACTGAGATTTGAGAG+AGG | + | chr6.3:74977798-74977817 | None:intergenic | 50.0% | |
| TGCTTTGTATGTGGAGGTGG+AGG | - | chr6.3:74977706-74977725 | MS.gene05329:CDS | 50.0% | |
| TTCTAACGAAGGCAGATCGG+AGG | - | chr6.3:74976790-74976809 | MS.gene05329:CDS | 50.0% | |
| ! | CTTGTCACCGATGGTGGTTT+CGG | - | chr6.3:74976836-74976855 | MS.gene05329:CDS | 50.0% |
| ! | TCAGGTACCTTCCGCTGTTT+TGG | + | chr6.3:74976929-74976948 | None:intergenic | 50.0% |
| !! | CGTTTCTGAAACTCACCTGG+GGG | - | chr6.3:74978322-74978341 | MS.gene05329:CDS | 50.0% |
| ACTGCCACCGAAACCACCAT+CGG | + | chr6.3:74976846-74976865 | None:intergenic | 55.0% | |
| AGCGGTCACTGAATTGTCCG+CGG | - | chr6.3:74977664-74977683 | MS.gene05329:CDS | 55.0% | |
| CAGTTAGCCGGTAGTCAAGG+GGG | + | chr6.3:74978193-74978212 | None:intergenic | 55.0% | |
| GATCAATGGGTCACTGCTCG+CGG | - | chr6.3:74976887-74976906 | MS.gene05329:intron | 55.0% | |
| GTGGAGGTGGAGGAAGAAAG+TGG | - | chr6.3:74977716-74977735 | MS.gene05329:CDS | 55.0% | |
| ! | GCGTGCCCTAGAAAAGCATG+AGG | - | chr6.3:74977559-74977578 | MS.gene05329:CDS | 55.0% |
| GGTACCAGAGCTCTCTGGTC+AGG | + | chr6.3:74976947-74976966 | None:intergenic | 60.0% | |
| GGTACCTGACCAGAGAGCTC+TGG | - | chr6.3:74976940-74976959 | MS.gene05329:intron | 60.0% | |
| TCGGAGGGTCCCGGTCAATA+TGG | - | chr6.3:74976806-74976825 | MS.gene05329:CDS | 60.0% | |
| ! | ATGCCGCTTGTCACCGATGG+TGG | - | chr6.3:74976830-74976849 | MS.gene05329:CDS | 60.0% |
| ! | GGTATGCCGCTTGTCACCGA+TGG | - | chr6.3:74976827-74976846 | MS.gene05329:CDS | 60.0% |
| ! | GTCACCGATGGTGGTTTCGG+TGG | - | chr6.3:74976839-74976858 | MS.gene05329:CDS | 60.0% |
| CAATGGGTCACTGCTCGCGG+CGG | - | chr6.3:74976890-74976909 | MS.gene05329:intron | 65.0% | |
| GAAGGCAGATCGGAGGGTCC+CGG | - | chr6.3:74976797-74976816 | MS.gene05329:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 74976777 | 74978436 | 74976777 | ID=MS.gene05329 |
| chr6.3 | mRNA | 74976777 | 74978436 | 74976777 | ID=MS.gene05329.t1;Parent=MS.gene05329 |
| chr6.3 | exon | 74978273 | 74978436 | 74978273 | ID=MS.gene05329.t1.exon1;Parent=MS.gene05329.t1 |
| chr6.3 | CDS | 74978273 | 74978436 | 74978273 | ID=cds.MS.gene05329.t1;Parent=MS.gene05329.t1 |
| chr6.3 | exon | 74977933 | 74978011 | 74977933 | ID=MS.gene05329.t1.exon2;Parent=MS.gene05329.t1 |
| chr6.3 | CDS | 74977933 | 74978011 | 74977933 | ID=cds.MS.gene05329.t1;Parent=MS.gene05329.t1 |
| chr6.3 | exon | 74977821 | 74977868 | 74977821 | ID=MS.gene05329.t1.exon3;Parent=MS.gene05329.t1 |
| chr6.3 | CDS | 74977821 | 74977868 | 74977821 | ID=cds.MS.gene05329.t1;Parent=MS.gene05329.t1 |
| chr6.3 | exon | 74977476 | 74977740 | 74977476 | ID=MS.gene05329.t1.exon4;Parent=MS.gene05329.t1 |
| chr6.3 | CDS | 74977476 | 74977740 | 74977476 | ID=cds.MS.gene05329.t1;Parent=MS.gene05329.t1 |
| chr6.3 | exon | 74976777 | 74976904 | 74976777 | ID=MS.gene05329.t1.exon5;Parent=MS.gene05329.t1 |
| chr6.3 | CDS | 74976777 | 74976904 | 74976777 | ID=cds.MS.gene05329.t1;Parent=MS.gene05329.t1 |
| Gene Sequence |
| Protein sequence |
