AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31093

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31093.t1 MTR_2g097020 90.869 679 43 5 1 672 1 667 0.0 1208
MS.gene31093.t1 MTR_2g097010 81.121 678 122 1 1 672 1 678 0.0 1033
MS.gene31093.t1 MTR_4g046643 80.455 660 117 3 1 655 1 653 0.0 1028
MS.gene31093.t1 MTR_2g095400 80.383 678 86 5 1 672 1 637 0.0 1025
MS.gene31093.t1 MTR_2g097000 74.872 390 80 3 299 672 2 389 0.0 534
MS.gene31093.t1 MTR_3g067815 39.443 682 352 13 1 667 1 636 4.84e-155 462
MS.gene31093.t1 MTR_5g079940 37.858 663 366 16 21 671 492 1120 5.13e-135 424
MS.gene31093.t1 MTR_4g126200 74.144 263 52 3 414 672 3 253 3.09e-129 382
MS.gene31093.t1 MTR_4g006760 35.498 662 353 15 21 668 24 625 3.65e-116 362
MS.gene31093.t1 MTR_4g131350 36.323 669 355 18 16 671 72 682 1.31e-115 362
MS.gene31093.t1 MTR_4g125920 36.024 669 357 18 16 671 19 629 6.92e-115 358
MS.gene31093.t1 MTR_4g126180 78.261 115 25 0 300 414 3 117 2.59e-50 171
MS.gene31093.t1 MTR_3g067855 44.545 220 106 4 441 659 123 327 1.94e-47 171
MS.gene31093.t1 MTR_8g446460 56.618 136 50 3 9 138 107 239 2.10e-36 139
MS.gene31093.t1 MTR_3g067845 35.448 268 154 5 406 671 1 251 3.62e-35 134
MS.gene31093.t1 MTR_4g131310 26.049 453 241 13 16 458 19 387 1.25e-30 125
MS.gene31093.t1 MTR_4g131310 57.812 64 27 0 597 660 391 454 1.99e-17 85.9
MS.gene31093.t1 MTR_2g066850 65.882 85 24 3 2 84 66 147 8.33e-25 110
MS.gene31093.t1 MTR_2g075630 74.242 66 14 2 2 67 67 129 5.46e-24 102
MS.gene31093.t1 MTR_8g063010 63.492 63 20 2 18 80 57 116 1.07e-18 85.5
MS.gene31093.t1 MTR_3g067825 44.186 86 44 1 578 659 7 92 2.70e-16 75.9
MS.gene31093.t1 MTR_5g044360 62.000 50 17 2 25 74 76 123 9.91e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31093.t1 AT1G13790 46.881 529 259 7 139 663 216 726 1.88e-142 433
MS.gene31093.t1 AT1G13790 46.881 529 259 7 139 663 216 726 1.88e-142 433
MS.gene31093.t1 AT3G12550 35.650 662 372 13 16 663 8 629 1.86e-117 365
MS.gene31093.t1 AT3G48670 35.015 674 374 14 13 671 21 645 6.78e-117 364
MS.gene31093.t1 AT3G48670 35.015 674 374 14 13 671 21 645 6.78e-117 364
MS.gene31093.t1 AT3G48670 35.015 674 374 14 13 671 21 645 6.78e-117 364
MS.gene31093.t1 AT3G12550 35.445 663 373 14 16 663 8 630 1.02e-115 361
MS.gene31093.t1 AT3G12550 35.445 663 373 14 16 663 8 630 1.02e-115 361
MS.gene31093.t1 AT3G12550 35.445 663 373 14 16 663 8 630 1.02e-115 361
MS.gene31093.t1 AT1G15910 34.269 677 364 15 16 671 18 634 1.35e-109 345
MS.gene31093.t1 AT5G59390 36.746 547 306 10 131 661 17 539 6.82e-105 330
MS.gene31093.t1 AT5G59390 36.746 547 306 10 131 661 17 539 6.82e-105 330
MS.gene31093.t1 AT5G59390 36.746 547 306 10 131 661 17 539 6.82e-105 330
MS.gene31093.t1 AT4G00380 33.183 666 364 14 15 659 18 623 2.47e-103 328
MS.gene31093.t1 AT4G00380 33.183 666 364 14 15 659 18 623 2.47e-103 328
MS.gene31093.t1 AT5G59390 36.413 552 306 11 131 661 17 544 1.12e-102 324
MS.gene31093.t1 AT5G59390 36.413 552 306 11 131 661 17 544 1.12e-102 324
MS.gene31093.t1 AT1G80790 34.564 677 362 15 15 671 19 634 2.24e-101 323
MS.gene31093.t1 AT1G80790 34.564 677 362 15 15 671 19 634 2.24e-101 323
MS.gene31093.t1 AT4G00380 36.313 537 293 9 141 659 90 595 5.68e-101 321
MS.gene31093.t1 AT4G01180 36.464 543 297 10 137 661 27 539 3.23e-97 310
MS.gene31093.t1 AT3G12550 33.106 586 338 13 16 587 8 553 4.84e-85 279
MS.gene31093.t1 AT4G01780 32.903 465 205 12 209 671 111 470 3.68e-58 204
MS.gene31093.t1 AT1G80790 30.172 464 257 12 15 458 19 435 2.40e-54 193
MS.gene31093.t1 AT3G29375 41.429 210 101 5 462 670 38 226 5.15e-41 149
MS.gene31093.t1 AT3G29375 41.429 210 101 5 462 670 161 349 1.02e-38 147
MS.gene31093.t1 AT3G29375 36.508 126 61 3 462 587 38 144 1.50e-14 72.8
MS.gene31093.t1 AT2G16490 40.000 65 39 0 596 660 74 138 1.08e-11 64.7

Find 163 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCCATTGTTTAATTAAA+TGG 0.065652 2.4:-5960783 None:intergenic
TTCCTCGGTCTTCAGCTTTA+AGG 0.140650 2.4:-5958126 None:intergenic
GGGGATTTGAAAACTGTTTC+TGG 0.144259 2.4:+5958047 MS.gene31093:CDS
CCCTTTGCAGTTGTTCAATT+TGG 0.168840 2.4:+5957840 MS.gene31093:CDS
ACTTGATATTAAGCCATTTC+TGG 0.206556 2.4:+5960134 MS.gene31093:CDS
GAAGTTAGAGAGGAGCTTTC+AGG 0.211680 2.4:+5957893 MS.gene31093:CDS
TAAACAATGGAAATTAAATA+AGG 0.236962 2.4:+5960792 MS.gene31093:CDS
AAAGTTTGAAGGATGATTTC+GGG 0.265267 2.4:+5960629 MS.gene31093:CDS
ATGACTCGAGCAGTGTTCTT+TGG 0.279903 2.4:-5960087 None:intergenic
GATGCTTGAACATTTCAATA+AGG 0.283852 2.4:+5958220 MS.gene31093:CDS
AAAAGTTTGAAGGATGATTT+CGG 0.295553 2.4:+5960628 MS.gene31093:CDS
CTCTTAGCTGCTTCCAGAAA+TGG 0.310177 2.4:-5960147 None:intergenic
TCCCTAAAATTCCAAAGTTC+TGG 0.313529 2.4:-5960727 None:intergenic
AATTCCAAAGTTCTGGTATT+GGG 0.314445 2.4:-5960720 None:intergenic
CTCCAATTCCAATGCCTGTT+TGG 0.322709 2.4:-5959151 None:intergenic
GAGGGATTACTTGGCTTTAC+GGG 0.324290 2.4:+5957932 MS.gene31093:CDS
TCAACAAACGCTGGTTGTTC+AGG 0.326781 2.4:+5959308 MS.gene31093:CDS
GAGCGGGGAGATAGACTCTT+TGG 0.328386 2.4:+5957960 MS.gene31093:CDS
CCTTGTAGTAATCATCCTTC+AGG 0.329123 2.4:-5957320 None:intergenic
ACGGCTGAAAGGAGCTTTCC+AGG 0.341751 2.4:+5959179 MS.gene31093:CDS
TTTGATCCATCGCTTTCCTT+AGG 0.347229 2.4:-5958190 None:intergenic
GGCTTTACGGGAGCAGGAGC+GGG 0.350376 2.4:+5957944 MS.gene31093:CDS
TGCCAAACAGGCATTGGAAT+TGG 0.350612 2.4:+5959149 MS.gene31093:CDS
GAATGATGCTGAGGGTCATT+TGG 0.358140 2.4:+5957623 MS.gene31093:CDS
TTTCCATTGTTTAATTAAAT+GGG 0.360061 2.4:-5960782 None:intergenic
ACCTGAGTCACCCACAATTC+TGG 0.361313 2.4:-5957433 None:intergenic
GGCAAACACCTCCAGGGAAA+TGG 0.364188 2.4:+5958026 MS.gene31093:CDS
ACTGCCCTGTGGAACTTTAG+AGG 0.368266 2.4:+5957810 MS.gene31093:CDS
GGTCTTCAGCTTTAAGGTAT+TGG 0.374345 2.4:-5958120 None:intergenic
AGAGGGATTACTTGGCTTTA+CGG 0.374808 2.4:+5957931 MS.gene31093:CDS
ATGCTTGAACATTTCAATAA+GGG 0.377132 2.4:+5958221 MS.gene31093:CDS
AAAGCTGAAGACCGAGGAAT+TGG 0.379202 2.4:+5958130 MS.gene31093:CDS
ACAAGCTCGTGAGTCTGATT+TGG 0.387571 2.4:+5957269 MS.gene31093:CDS
AAATTCCAAAGTTCTGGTAT+TGG 0.389092 2.4:-5960721 None:intergenic
TGACTCGAGCAGTGTTCTTT+GGG 0.389447 2.4:-5960086 None:intergenic
GCAAACACCTCCAGGGAAAT+GGG 0.392632 2.4:+5958027 MS.gene31093:CDS
CACAGGGCAGTAACTTTCAA+TGG 0.399272 2.4:-5957798 None:intergenic
CTCCAATGTGATTCATTACC+TGG 0.402190 2.4:-5959197 None:intergenic
GGAAAGAAGCTGAGGACAAT+AGG 0.403031 2.4:+5958069 MS.gene31093:CDS
GGGATTTGAAAACTGTTTCT+GGG 0.403525 2.4:+5958048 MS.gene31093:CDS
TTGATCCATCGCTTTCCTTA+GGG 0.410024 2.4:-5958189 None:intergenic
CTGTGGTAAGAGGGATTACT+TGG 0.417597 2.4:+5957923 MS.gene31093:CDS
TCACATTGGAGAGACTGATA+TGG 0.420018 2.4:+5959209 MS.gene31093:CDS
GAGGAAGCTTCTCTCTGGTT+TGG 0.422362 2.4:+5958097 MS.gene31093:CDS
TATAATTTCAAAGATATAGT+TGG 0.424336 2.4:+5958005 MS.gene31093:CDS
GAGAGGACTTGATGCCAAAC+AGG 0.424502 2.4:+5959137 MS.gene31093:CDS
ATACCAGGAGAAAGTATCTA+AGG 0.429355 2.4:+5958479 MS.gene31093:CDS
TTACTTGGCTTTACGGGAGC+AGG 0.431347 2.4:+5957938 MS.gene31093:CDS
AAACAATGGAAATTAAATAA+GGG 0.432138 2.4:+5960793 MS.gene31093:CDS
CAGAATGGAGCTGCAGGAAA+AGG 0.433632 2.4:+5959257 MS.gene31093:CDS
GGAAGAGGAACTAGAGGGTG+TGG 0.439248 2.4:+5959278 MS.gene31093:CDS
AAAGTTGTAACTGACAAAGA+AGG 0.452511 2.4:+5960300 MS.gene31093:CDS
TTTACTTGTGCACAGTGGAT+TGG 0.457461 2.4:+5960060 MS.gene31093:intron
AATGATGCTGAGGGTCATTT+GGG 0.461869 2.4:+5957624 MS.gene31093:CDS
TATAGTTGGCAAACACCTCC+AGG 0.464223 2.4:+5958019 MS.gene31093:CDS
TTTCTTCTCAAAATATAGCT+TGG 0.468603 2.4:-5958604 None:intergenic
GGATCATGAAAAGGCCAGGC+TGG 0.471261 2.4:+5958500 MS.gene31093:CDS
AGCAATCAGAATGGAGCTGC+AGG 0.472823 2.4:+5959251 MS.gene31093:CDS
GTCTTTGGCTGAAGAACATA+AGG 0.472836 2.4:+5958982 MS.gene31093:CDS
ACTTGATGCCAAACAGGCAT+TGG 0.473867 2.4:+5959143 MS.gene31093:CDS
AGGCAGAGCACTGTGGTAAG+AGG 0.475875 2.4:+5957913 MS.gene31093:CDS
AGGAGGAGCTGATCATGAAC+GGG 0.480433 2.4:+5957769 MS.gene31093:CDS
TGGCTTTACGGGAGCAGGAG+CGG 0.481924 2.4:+5957943 MS.gene31093:CDS
TGGCATCAAGTCCTCTCTCC+AGG 0.485549 2.4:-5959131 None:intergenic
CATAATTTCTGTGAAAAGGA+TGG 0.486804 2.4:+5960107 MS.gene31093:CDS
AGATAGACTCTTTGGGTGGA+TGG 0.488205 2.4:+5957968 MS.gene31093:CDS
GGTACCCAATACCAGAACTT+TGG 0.490402 2.4:+5960716 MS.gene31093:CDS
AGCTGTCTGCTCCAATTCCT+CGG 0.490587 2.4:-5958141 None:intergenic
AAGGAAAGCGATGGATCAAA+AGG 0.493646 2.4:+5958193 MS.gene31093:CDS
AGTATCTAAGGATCATGAAA+AGG 0.500223 2.4:+5958491 MS.gene31093:CDS
TTTGTCCTCTAAAGTTCCAC+AGG 0.503452 2.4:-5957815 None:intergenic
AGCGGGGAGATAGACTCTTT+GGG 0.503541 2.4:+5957961 MS.gene31093:CDS
AAAGCGAGGAAGCTTCTCTC+TGG 0.506331 2.4:+5958092 MS.gene31093:CDS
CCAAATTGAACAACTGCAAA+GGG 0.510429 2.4:-5957840 None:intergenic
GCAGGTTGAACGCGAATACC+AGG 0.511335 2.4:+5958464 MS.gene31093:CDS
GAGTCATAATTTCTGTGAAA+AGG 0.512368 2.4:+5960103 MS.gene31093:CDS
TTGTCAGTTACAACTTTGAA+AGG 0.514713 2.4:-5960294 None:intergenic
GAAGGATGATTTCGGGGATG+AGG 0.514919 2.4:+5960636 MS.gene31093:CDS
GGAAAAGGAAGAGGAACTAG+AGG 0.515896 2.4:+5959272 MS.gene31093:CDS
ATGAGTTGTTTGTATGGCCA+TGG 0.517649 2.4:+5957667 MS.gene31093:CDS
ATGATGATGAGTTGTTTGTA+TGG 0.517675 2.4:+5957661 MS.gene31093:CDS
CCGAGCTTCTAGTTCCAGCC+TGG 0.518163 2.4:-5958514 None:intergenic
ACAGGGCAGTAACTTTCAAT+GGG 0.518654 2.4:-5957797 None:intergenic
AAAGTGGGATGACTTTGTTA+AGG 0.519671 2.4:+5960257 MS.gene31093:CDS
ACTTTGAAAGGATGCCAGCT+TGG 0.520820 2.4:-5960282 None:intergenic
TGTTGCTAAGCATTCAGCTC+TGG 0.522198 2.4:+5957470 MS.gene31093:CDS
CGAACTTATTTCCCGTGAGA+AGG 0.523382 2.4:+5958542 MS.gene31093:CDS
GGTATTGGGTACCTACCACT+AGG 0.523917 2.4:-5960706 None:intergenic
TCCAAATTGAACAACTGCAA+AGG 0.527752 2.4:-5957841 None:intergenic
GGCAATAGAAGAGCAACAAA+AGG 0.535693 2.4:+5958943 MS.gene31093:CDS
TAATCCTTGTTGTAGCAAAA+CGG 0.536850 2.4:-5957378 None:intergenic
AGGGGTCTTATCATTATCAA+TGG 0.538005 2.4:-5957535 None:intergenic
TCCAGAATTGTGGGTGACTC+AGG 0.538417 2.4:+5957432 MS.gene31093:CDS
TGTTCAATTTGGAAGAGAGT+GGG 0.538931 2.4:+5957851 MS.gene31093:CDS
TAGTATTGTTAATGATAAGT+CGG 0.539521 2.4:+5957563 MS.gene31093:CDS
AGGAAGGAAGGCTTCATTGA+AGG 0.541212 2.4:+5960750 MS.gene31093:CDS
GCTTTACGGGAGCAGGAGCG+GGG 0.541512 2.4:+5957945 MS.gene31093:CDS
TTTCCCATTTAATTAAACAA+TGG 0.546251 2.4:+5960779 MS.gene31093:CDS
TTGTTCAATTTGGAAGAGAG+TGG 0.547384 2.4:+5957850 MS.gene31093:CDS
AGAGATCAGCAAGATGCGGC+AGG 0.552419 2.4:+5958446 MS.gene31093:intron
GATCCTTAGATACTTTCTCC+TGG 0.553646 2.4:-5958482 None:intergenic
GGCAGAGCACTGTGGTAAGA+GGG 0.555245 2.4:+5957914 MS.gene31093:CDS
CTAAGGATCATGAAAAGGCC+AGG 0.555820 2.4:+5958496 MS.gene31093:CDS
TGCAGTAGCTACAGCTCTGA+AGG 0.557138 2.4:+5960666 MS.gene31093:CDS
AAAATTGGAAGCAATCAGAA+TGG 0.559788 2.4:+5959242 MS.gene31093:CDS
CCTGAAGGATGATTACTACA+AGG 0.560609 2.4:+5957320 MS.gene31093:CDS
ATAATTTCTGTGAAAAGGAT+GGG 0.567235 2.4:+5960108 MS.gene31093:CDS
TCAAATCCCCATTTCCCTGG+AGG 0.569890 2.4:-5958034 None:intergenic
AAGGAGGAGCTGATCATGAA+CGG 0.571820 2.4:+5957768 MS.gene31093:CDS
GGAGCTGCAGGAAAAGGAAG+AGG 0.576364 2.4:+5959263 MS.gene31093:CDS
AAGGGAAAGAAAGCTTATTG+AGG 0.581176 2.4:+5960811 MS.gene31093:CDS
CAATTTGGAAGAGAGTGGGA+TGG 0.581803 2.4:+5957855 MS.gene31093:CDS
CAATCGAGTGGTGCTCAAAG+TGG 0.583300 2.4:+5960241 MS.gene31093:CDS
AATCGAGTGGTGCTCAAAGT+GGG 0.588592 2.4:+5960242 MS.gene31093:CDS
AAAATTCATGACCTGGAGAG+AGG 0.591924 2.4:+5959120 MS.gene31093:CDS
GTATTGGGTACCTACCACTA+GGG 0.598398 2.4:-5960705 None:intergenic
GAGACATGCATCCAGAATTG+TGG 0.598602 2.4:+5957422 MS.gene31093:CDS
ATTGATAATGATAAGACCCC+TGG 0.601450 2.4:+5957537 MS.gene31093:CDS
ACTTATTATGAATGATGCTG+AGG 0.601843 2.4:+5957614 MS.gene31093:CDS
CATTGGAATTGGAGATAGAA+CGG 0.601983 2.4:+5959160 MS.gene31093:CDS
TTCCAGGTAATGAATCACAT+TGG 0.602846 2.4:+5959195 MS.gene31093:CDS
TTGGAGATAGAACGGCTGAA+AGG 0.603749 2.4:+5959168 MS.gene31093:CDS
GCAAAACGGACAGCGATACG+TGG 0.605291 2.4:-5957364 None:intergenic
AAGTTGTAACTGACAAAGAA+GGG 0.606382 2.4:+5960301 MS.gene31093:CDS
TCACAAGAAAATTCATGACC+TGG 0.607531 2.4:+5959113 MS.gene31093:CDS
TCATTAACAATACTAACACC+AGG 0.607787 2.4:-5957555 None:intergenic
GCTTCTGCAGATCCTTCTCA+CGG 0.608508 2.4:-5958554 None:intergenic
CCAGGCTGGAACTAGAAGCT+CGG 0.611703 2.4:+5958514 MS.gene31093:CDS
GACAGCTAGCAAGTATGATG+AGG 0.612521 2.4:+5958157 MS.gene31093:CDS
AGACATGCATCCAGAATTGT+GGG 0.616586 2.4:+5957423 MS.gene31093:CDS
TAGATATTATGAAGACCTGA+AGG 0.618566 2.4:+5957305 MS.gene31093:CDS
GTTGTTTGTATGGCCATGGA+TGG 0.618975 2.4:+5957671 MS.gene31093:CDS
ATGAGGTGAATGTGTCCCTA+AGG 0.619227 2.4:+5958174 MS.gene31093:CDS
TGTGTCCCTAAGGAAAGCGA+TGG 0.619461 2.4:+5958184 MS.gene31093:CDS
CTTCTGCAGATCCTTCTCAC+GGG 0.621177 2.4:-5958553 None:intergenic
CTGAGGACAATAGGAAAGCG+AGG 0.623390 2.4:+5958078 MS.gene31093:CDS
AGGAAGGCTTCATTGAAGGA+AGG 0.630962 2.4:+5960754 MS.gene31093:CDS
TGTTTCTGGGAAAGAAGCTG+AGG 0.631054 2.4:+5958061 MS.gene31093:CDS
ACTTTGTTAAGGATCCAAGC+TGG 0.631892 2.4:+5960268 MS.gene31093:CDS
CTTATTATGAATGATGCTGA+GGG 0.632417 2.4:+5957615 MS.gene31093:CDS
TTGTTGTTTACAGAATGAGA+TGG 0.635228 2.4:+5958922 MS.gene31093:intron
TCTCTAACTTCATAGCATTG+TGG 0.639586 2.4:-5957881 None:intergenic
TGCAAATGAAAGCAATCGAG+TGG 0.643737 2.4:+5960229 MS.gene31093:CDS
CATTAGAGATCAGCAAGATG+CGG 0.643905 2.4:+5958442 MS.gene31093:intron
ATGAGTACAACCCTAGTGGT+AGG 0.644559 2.4:+5960695 MS.gene31093:CDS
CAAACACCTCCAGGGAAATG+GGG 0.645793 2.4:+5958028 MS.gene31093:CDS
AAGTTTGAAGGATGATTTCG+GGG 0.646352 2.4:+5960630 MS.gene31093:CDS
CATTAACAATACTAACACCA+GGG 0.651371 2.4:-5957554 None:intergenic
AATTGTGGGTGACTCAGGTG+AGG 0.654445 2.4:+5957437 MS.gene31093:CDS
ACAATGCTATGAAGTTAGAG+AGG 0.654487 2.4:+5957883 MS.gene31093:CDS
ATAGTTGGCAAACACCTCCA+GGG 0.662157 2.4:+5958020 MS.gene31093:CDS
TACCTTAAAGCTGAAGACCG+AGG 0.663520 2.4:+5958124 MS.gene31093:CDS
TGACAAAGAAGGGAACTCCA+AGG 0.667692 2.4:+5960311 MS.gene31093:CDS
CATTGAAAGTTACTGCCCTG+TGG 0.673584 2.4:+5957799 MS.gene31093:CDS
GGAAGATCTTCAACAAACGC+TGG 0.674192 2.4:+5959299 MS.gene31093:CDS
GAAAAGGAAGAGGAACTAGA+GGG 0.677377 2.4:+5959273 MS.gene31093:CDS
GAAATGTATATTGAAAGCTA+TGG 0.677454 2.4:+5957492 MS.gene31093:CDS
TTGTCCTCTAAAGTTCCACA+GGG 0.695033 2.4:-5957814 None:intergenic
GGCTGGAACTAGAAGCTCGG+AGG 0.704210 2.4:+5958517 MS.gene31093:CDS
TTAAATGAGTACAACCCTAG+TGG 0.707957 2.4:+5960691 MS.gene31093:CDS
ATTAACAATACTAACACCAG+GGG 0.713244 2.4:-5957553 None:intergenic
GGGGAGATAGACTCTTTGGG+TGG 0.722759 2.4:+5957964 MS.gene31093:CDS
AGCTTTCAGGCAGAGCACTG+TGG 0.768741 2.4:+5957906 MS.gene31093:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTAATATTGGTTAATAT+TGG + chr2.4:5958271-5958290 MS.gene31093:intron 10.0%
!! AAACAATGGAAATTAAATAA+GGG + chr2.4:5960793-5960812 MS.gene31093:CDS 15.0%
!! AATTAAAAACTGTAGATAAA+AGG - chr2.4:5959023-5959042 None:intergenic 15.0%
!! ATAAGTTATTGAAAAATAAC+AGG - chr2.4:5958879-5958898 None:intergenic 15.0%
!! ATTTCCATTGTTTAATTAAA+TGG - chr2.4:5960786-5960805 None:intergenic 15.0%
!! GAAGAATCATAAAAAAATTA+AGG + chr2.4:5957749-5957768 MS.gene31093:CDS 15.0%
!! TAAACAATGGAAATTAAATA+AGG + chr2.4:5960792-5960811 MS.gene31093:CDS 15.0%
!! TAAGTTATTGAAAAATAACA+GGG - chr2.4:5958878-5958897 None:intergenic 15.0%
!! TATAATTTCAAAGATATAGT+TGG + chr2.4:5958005-5958024 MS.gene31093:CDS 15.0%
!! TTTCCATTGTTTAATTAAAT+GGG - chr2.4:5960785-5960804 None:intergenic 15.0%
!!! ATGTTAATATTAATGTCTTT+TGG + chr2.4:5959405-5959424 MS.gene31093:intron 15.0%
!!! TTTGATTTTTTAATACTTCA+TGG + chr2.4:5958397-5958416 MS.gene31093:intron 15.0%
!!! TTTTTACTACTATATCATTT+TGG + chr2.4:5958331-5958350 MS.gene31093:intron 15.0%
!! ACCTAAAATGTAAAACTTTA+TGG - chr2.4:5959841-5959860 None:intergenic 20.0%
!! AGAAACATGTAATATATTTC+TGG + chr2.4:5958622-5958641 MS.gene31093:intron 20.0%
!! ATATTAACATTTATATGCTG+AGG - chr2.4:5959395-5959414 None:intergenic 20.0%
!! CACAAGTAAAAGTAATTAAT+TGG - chr2.4:5960050-5960069 None:intergenic 20.0%
!! GAATCATAAAAAAATTAAGG+AGG + chr2.4:5957752-5957771 MS.gene31093:CDS 20.0%
!! GCTTTCTAATTATTAAGAAA+TGG - chr2.4:5960445-5960464 None:intergenic 20.0%
!! TAGTATTGTTAATGATAAGT+CGG + chr2.4:5957563-5957582 MS.gene31093:CDS 20.0%
!! TGAACTGTTCTAATTAATAT+TGG + chr2.4:5958261-5958280 MS.gene31093:intron 20.0%
!! TTCTTAATAATTAGAAAGCA+TGG + chr2.4:5960446-5960465 MS.gene31093:intron 20.0%
!! TTTCCCATTTAATTAAACAA+TGG + chr2.4:5960779-5960798 MS.gene31093:CDS 20.0%
!!! AATGGTGCATTATATATTTT+AGG - chr2.4:5960427-5960446 None:intergenic 20.0%
!!! CTAAATTTGCTTCTTTAAAA+TGG + chr2.4:5958777-5958796 MS.gene31093:intron 20.0%
!!! TCCATAAAGTTTTACATTTT+AGG + chr2.4:5959837-5959856 MS.gene31093:intron 20.0%
!!! TTTACATTTTAGGTGAAAAT+TGG + chr2.4:5959847-5959866 MS.gene31093:intron 20.0%
! AAAACACCGAAAATTTGTAT+TGG - chr2.4:5959708-5959727 None:intergenic 25.0%
! AAAACTTAAGCAGAAATGTA+GGG + chr2.4:5959532-5959551 MS.gene31093:intron 25.0%
! AAAAGTTTGAAGGATGATTT+CGG + chr2.4:5960628-5960647 MS.gene31093:CDS 25.0%
! ATAATTTCTGTGAAAAGGAT+GGG + chr2.4:5960108-5960127 MS.gene31093:CDS 25.0%
! ATCTTATGATGTGAATAACT+TGG + chr2.4:5959773-5959792 MS.gene31093:intron 25.0%
! ATGCTTGAACATTTCAATAA+GGG + chr2.4:5958221-5958240 MS.gene31093:CDS 25.0%
! ATTATTTACTGGAAATTTGC+TGG + chr2.4:5960492-5960511 MS.gene31093:intron 25.0%
! ATTTGATACAAAAGACCAAA+TGG - chr2.4:5958845-5958864 None:intergenic 25.0%
! CAAAACAAACAATGAAATCA+TGG - chr2.4:5960026-5960045 None:intergenic 25.0%
! CAATTCAGTTTCTATAACTA+AGG + chr2.4:5959728-5959747 MS.gene31093:intron 25.0%
! GAAATGTATATTGAAAGCTA+TGG + chr2.4:5957492-5957511 MS.gene31093:CDS 25.0%
! GTTGAACATATATTAGATCA+TGG - chr2.4:5960567-5960586 None:intergenic 25.0%
! TAAAAAGCTGAAAAGTTTGA+AGG + chr2.4:5960618-5960637 MS.gene31093:CDS 25.0%
! TAAAACTTAAGCAGAAATGT+AGG + chr2.4:5959531-5959550 MS.gene31093:intron 25.0%
! TAGGAGATAAATATATCCAA+AGG - chr2.4:5960408-5960427 None:intergenic 25.0%
! TATGGATGAGAAGAAAAAAT+TGG + chr2.4:5959227-5959246 MS.gene31093:CDS 25.0%
! TGATGAAAAAATGATGTCTT+TGG + chr2.4:5958967-5958986 MS.gene31093:CDS 25.0%
! TGTAGTGATCTATTATTTAC+TGG + chr2.4:5960481-5960500 MS.gene31093:intron 25.0%
! TTGTTCACATGTATTTACAA+TGG + chr2.4:5959682-5959701 MS.gene31093:intron 25.0%
! TTTCTTCTCAAAATATAGCT+TGG - chr2.4:5958607-5958626 None:intergenic 25.0%
! TTTGTCATATTGTTTCATAC+TGG + chr2.4:5959926-5959945 MS.gene31093:intron 25.0%
!! AACTAATCTTTTACAAAGTC+AGG + chr2.4:5959477-5959496 MS.gene31093:intron 25.0%
!! ATACAGCTATTAACTTTTTG+CGG - chr2.4:5959365-5959384 None:intergenic 25.0%
!! ATGTATATGCTTAAGTTTTG+AGG + chr2.4:5959050-5959069 MS.gene31093:intron 25.0%
!! ATTTCTGCTTAAGTTTTACA+AGG - chr2.4:5959529-5959548 None:intergenic 25.0%
!! TAATTAGAAAGCATGGTAAT+TGG + chr2.4:5960453-5960472 MS.gene31093:intron 25.0%
!!! ACTTATTTTGCTTCAAGTTT+AGG - chr2.4:5959974-5959993 None:intergenic 25.0%
!!! GAAATCTTATTTAAGTTGCT+TGG + chr2.4:5959648-5959667 MS.gene31093:intron 25.0%
AAAATTGGAAGCAATCAGAA+TGG + chr2.4:5959242-5959261 MS.gene31093:CDS 30.0%
AAAGTTGTAACTGACAAAGA+AGG + chr2.4:5960300-5960319 MS.gene31093:CDS 30.0%
AAAGTTTGAAGGATGATTTC+GGG + chr2.4:5960629-5960648 MS.gene31093:CDS 30.0%
AAGTTGTAACTGACAAAGAA+GGG + chr2.4:5960301-5960320 MS.gene31093:CDS 30.0%
ACTTATTATGAATGATGCTG+AGG + chr2.4:5957614-5957633 MS.gene31093:CDS 30.0%
ACTTGATATTAAGCCATTTC+TGG + chr2.4:5960134-5960153 MS.gene31093:CDS 30.0%
AGTATCTAAGGATCATGAAA+AGG + chr2.4:5958491-5958510 MS.gene31093:CDS 30.0%
ATATGTTCAACATATCACAC+AGG + chr2.4:5960576-5960595 MS.gene31093:intron 30.0%
ATTAACAATACTAACACCAG+GGG - chr2.4:5957556-5957575 None:intergenic 30.0%
CATAATTTCTGTGAAAAGGA+TGG + chr2.4:5960107-5960126 MS.gene31093:CDS 30.0%
CATTAACAATACTAACACCA+GGG - chr2.4:5957557-5957576 None:intergenic 30.0%
CTTATTATGAATGATGCTGA+GGG + chr2.4:5957615-5957634 MS.gene31093:CDS 30.0%
GAGTCATAATTTCTGTGAAA+AGG + chr2.4:5960103-5960122 MS.gene31093:CDS 30.0%
GATGCTTGAACATTTCAATA+AGG + chr2.4:5958220-5958239 MS.gene31093:CDS 30.0%
TAGATATTATGAAGACCTGA+AGG + chr2.4:5957305-5957324 MS.gene31093:CDS 30.0%
TCATTAACAATACTAACACC+AGG - chr2.4:5957558-5957577 None:intergenic 30.0%
TGATTTGAATGTTTGCAAAC+AGG - chr2.4:5959621-5959640 None:intergenic 30.0%
TTGTCAGTTACAACTTTGAA+AGG - chr2.4:5960297-5960316 None:intergenic 30.0%
TTTGTAAGTGATCAATTTGC+AGG + chr2.4:5958750-5958769 MS.gene31093:intron 30.0%
! AAATTCCAAAGTTCTGGTAT+TGG - chr2.4:5960724-5960743 None:intergenic 30.0%
! AATTCCAAAGTTCTGGTATT+GGG - chr2.4:5960723-5960742 None:intergenic 30.0%
! ATCACACAGGAAATTTTAGA+CGG + chr2.4:5960589-5960608 MS.gene31093:intron 30.0%
! ATGATGATGAGTTGTTTGTA+TGG + chr2.4:5957661-5957680 MS.gene31093:CDS 30.0%
! CAAAAAGTGGAAAGTATGTT+GGG + chr2.4:5957727-5957746 MS.gene31093:CDS 30.0%
! CAATGGCCAATACAAATTTT+CGG + chr2.4:5959699-5959718 MS.gene31093:intron 30.0%
! GTTCTGTTTCTTTGATTTAG+AGG + chr2.4:5958295-5958314 MS.gene31093:intron 30.0%
! TAAGAGAGAATTTTCAGAGA+AGG + chr2.4:5960206-5960225 MS.gene31093:CDS 30.0%
! TAATCCTTGTTGTAGCAAAA+CGG - chr2.4:5957381-5957400 None:intergenic 30.0%
! TACAGCTATTAACTTTTTGC+GGG - chr2.4:5959364-5959383 None:intergenic 30.0%
!! CTAACAACACTTTTTGTGAT+TGG - chr2.4:5958804-5958823 None:intergenic 30.0%
!! TTCATACTGGTTCAATCATA+AGG + chr2.4:5959939-5959958 MS.gene31093:intron 30.0%
!! TTGTTGTTTACAGAATGAGA+TGG + chr2.4:5958922-5958941 MS.gene31093:intron 30.0%
!! TTTTTCAAAATCACCATCCA+TGG - chr2.4:5957687-5957706 None:intergenic 30.0%
!!! ACCAGAACTTTGGAATTTTA+GGG + chr2.4:5960726-5960745 MS.gene31093:CDS 30.0%
!!! CAACATACTTTCCACTTTTT+GGG - chr2.4:5957728-5957747 None:intergenic 30.0%
!!! TACCAGAACTTTGGAATTTT+AGG + chr2.4:5960725-5960744 MS.gene31093:CDS 30.0%
!!! TTAAGTTTTGAGGACTCTTT+TGG + chr2.4:5959060-5959079 MS.gene31093:intron 30.0%
AAAATTGGTAGAATCAGGTC+AGG + chr2.4:5959862-5959881 MS.gene31093:intron 35.0%
AAAGTGGGATGACTTTGTTA+AGG + chr2.4:5960257-5960276 MS.gene31093:CDS 35.0%
AAGTTTGAAGGATGATTTCG+GGG + chr2.4:5960630-5960649 MS.gene31093:CDS 35.0%
ACAATGCTATGAAGTTAGAG+AGG + chr2.4:5957883-5957902 MS.gene31093:CDS 35.0%
ACTCATATTGACCCAAAAAG+TGG + chr2.4:5957714-5957733 MS.gene31093:CDS 35.0%
ACTTTATGGACACAAACAAC+TGG - chr2.4:5959827-5959846 None:intergenic 35.0%
AGGTGAAAATTGGTAGAATC+AGG + chr2.4:5959857-5959876 MS.gene31093:intron 35.0%
CATTGGAATTGGAGATAGAA+CGG + chr2.4:5959160-5959179 MS.gene31093:CDS 35.0%
CCAAATTGAACAACTGCAAA+GGG - chr2.4:5957843-5957862 None:intergenic 35.0%
GATTTAGAGGTGAAACATTC+TGG + chr2.4:5958308-5958327 MS.gene31093:intron 35.0%
TCACAAGAAAATTCATGACC+TGG + chr2.4:5959113-5959132 MS.gene31093:CDS 35.0%
TCCAAATTGAACAACTGCAA+AGG - chr2.4:5957844-5957863 None:intergenic 35.0%
TCCCTAAAATTCCAAAGTTC+TGG - chr2.4:5960730-5960749 None:intergenic 35.0%
TCTCTAACTTCATAGCATTG+TGG - chr2.4:5957884-5957903 None:intergenic 35.0%
TGTTAGCATTCCTTACTCTA+TGG + chr2.4:5958818-5958837 MS.gene31093:intron 35.0%
TGTTCAATTTGGAAGAGAGT+GGG + chr2.4:5957851-5957870 MS.gene31093:CDS 35.0%
TTAAATGAGTACAACCCTAG+TGG + chr2.4:5960691-5960710 MS.gene31093:CDS 35.0%
TTCCAGGTAATGAATCACAT+TGG + chr2.4:5959195-5959214 MS.gene31093:CDS 35.0%
TTGTTCAATTTGGAAGAGAG+TGG + chr2.4:5957850-5957869 MS.gene31093:CDS 35.0%
! ACAAAAGTGTGTTCATGAGA+GGG - chr2.4:5958697-5958716 None:intergenic 35.0%
! AGGGGTCTTATCATTATCAA+TGG - chr2.4:5957538-5957557 None:intergenic 35.0%
! CATGAACACACTTTTGTGAT+GGG + chr2.4:5958700-5958719 MS.gene31093:intron 35.0%
! CCAAAAAGTGGAAAGTATGT+TGG + chr2.4:5957726-5957745 MS.gene31093:CDS 35.0%
! GCTTACAGTCTGTTACATTT+TGG + chr2.4:5958358-5958377 MS.gene31093:intron 35.0%
! GGGATTTGAAAACTGTTTCT+GGG + chr2.4:5958048-5958067 MS.gene31093:CDS 35.0%
! TCATGAACACACTTTTGTGA+TGG + chr2.4:5958699-5958718 MS.gene31093:intron 35.0%
!! ATACCAGGAGAAAGTATCTA+AGG + chr2.4:5958479-5958498 MS.gene31093:CDS 35.0%
!! ATTGATAATGATAAGACCCC+TGG + chr2.4:5957537-5957556 MS.gene31093:CDS 35.0%
!! CCAACATACTTTCCACTTTT+TGG - chr2.4:5957729-5957748 None:intergenic 35.0%
!! TTACTTTTACTTGTGCACAG+TGG + chr2.4:5960055-5960074 MS.gene31093:intron 35.0%
!! TTTGGAATTTTAGGGAAGGA+AGG + chr2.4:5960734-5960753 MS.gene31093:CDS 35.0%
!!! GAACTTTGGAATTTTAGGGA+AGG + chr2.4:5960730-5960749 MS.gene31093:CDS 35.0%
AAAATTCATGACCTGGAGAG+AGG + chr2.4:5959120-5959139 MS.gene31093:CDS 40.0%
AAGGAAAGCGATGGATCAAA+AGG + chr2.4:5958193-5958212 MS.gene31093:CDS 40.0%
AATCATGGCAACAATGCAAC+AGG - chr2.4:5960011-5960030 None:intergenic 40.0%
AATGATGCTGAGGGTCATTT+GGG + chr2.4:5957624-5957643 MS.gene31093:CDS 40.0%
ACAGGGCAGTAACTTTCAAT+GGG - chr2.4:5957800-5957819 None:intergenic 40.0%
ACCAAATGGTCCATAGAGTA+AGG - chr2.4:5958831-5958850 None:intergenic 40.0%
ACTTTGTTAAGGATCCAAGC+TGG + chr2.4:5960268-5960287 MS.gene31093:CDS 40.0%
AGACATGCATCCAGAATTGT+GGG + chr2.4:5957423-5957442 MS.gene31093:CDS 40.0%
ATGAGTTGTTTGTATGGCCA+TGG + chr2.4:5957667-5957686 MS.gene31093:CDS 40.0%
CATTAGAGATCAGCAAGATG+CGG + chr2.4:5958442-5958461 MS.gene31093:intron 40.0%
CCCTTTGCAGTTGTTCAATT+TGG + chr2.4:5957840-5957859 MS.gene31093:CDS 40.0%
CCTGAAGGATGATTACTACA+AGG + chr2.4:5957320-5957339 MS.gene31093:CDS 40.0%
CCTTGTAGTAATCATCCTTC+AGG - chr2.4:5957323-5957342 None:intergenic 40.0%
CTCCAATGTGATTCATTACC+TGG - chr2.4:5959200-5959219 None:intergenic 40.0%
GAAAAGGAAGAGGAACTAGA+GGG + chr2.4:5959273-5959292 MS.gene31093:CDS 40.0%
GATCCTTAGATACTTTCTCC+TGG - chr2.4:5958485-5958504 None:intergenic 40.0%
GGCAATAGAAGAGCAACAAA+AGG + chr2.4:5958943-5958962 MS.gene31093:CDS 40.0%
GGGGATTTGAAAACTGTTTC+TGG + chr2.4:5958047-5958066 MS.gene31093:CDS 40.0%
GTCTTTGGCTGAAGAACATA+AGG + chr2.4:5958982-5959001 MS.gene31093:CDS 40.0%
GTTCTGTTAAGACACACCTT+TGG + chr2.4:5960389-5960408 MS.gene31093:intron 40.0%
TCACATTGGAGAGACTGATA+TGG + chr2.4:5959209-5959228 MS.gene31093:CDS 40.0%
TCCTTACTCTATGGACCATT+TGG + chr2.4:5958827-5958846 MS.gene31093:intron 40.0%
TGCAAATGAAAGCAATCGAG+TGG + chr2.4:5960229-5960248 MS.gene31093:CDS 40.0%
TTCGTGAAGTCATTGTACCT+TGG - chr2.4:5960331-5960350 None:intergenic 40.0%
TTGATCCATCGCTTTCCTTA+GGG - chr2.4:5958192-5958211 None:intergenic 40.0%
TTGGCCATCAACTCATCTAA+TGG + chr2.4:5959424-5959443 MS.gene31093:intron 40.0%
TTTACTTGTGCACAGTGGAT+TGG + chr2.4:5960060-5960079 MS.gene31093:intron 40.0%
TTTGATCCATCGCTTTCCTT+AGG - chr2.4:5958193-5958212 None:intergenic 40.0%
! CACAAAAGTGTGTTCATGAG+AGG - chr2.4:5958698-5958717 None:intergenic 40.0%
! CAGACCATTAGATGAGTTGA+TGG - chr2.4:5959431-5959450 None:intergenic 40.0%
! TGCTGGTGTTAGCACTTATT+TGG + chr2.4:5960509-5960528 MS.gene31093:intron 40.0%
! TTTTCAAATCCCCATTTCCC+TGG - chr2.4:5958040-5958059 None:intergenic 40.0%
!! AGAGGGATTACTTGGCTTTA+CGG + chr2.4:5957931-5957950 MS.gene31093:CDS 40.0%
!! GAATTTTAGGGAAGGAAGGA+AGG + chr2.4:5960738-5960757 MS.gene31093:CDS 40.0%
!! GGTCTTCAGCTTTAAGGTAT+TGG - chr2.4:5958123-5958142 None:intergenic 40.0%
!! TTGTCCTCTAAAGTTCCACA+GGG - chr2.4:5957817-5957836 None:intergenic 40.0%
!! TTTGTCCTCTAAAGTTCCAC+AGG - chr2.4:5957818-5957837 None:intergenic 40.0%
!!! GTTTTGAGGACTCTTTTGGT+TGG + chr2.4:5959064-5959083 MS.gene31093:intron 40.0%
AAAGCTGAAGACCGAGGAAT+TGG + chr2.4:5958130-5958149 MS.gene31093:CDS 45.0%
AAGGAGGAGCTGATCATGAA+CGG + chr2.4:5957768-5957787 MS.gene31093:CDS 45.0%
AATCGAGTGGTGCTCAAAGT+GGG + chr2.4:5960242-5960261 MS.gene31093:CDS 45.0%
ACAAGCTCGTGAGTCTGATT+TGG + chr2.4:5957269-5957288 MS.gene31093:CDS 45.0%
ACTTGATGCCAAACAGGCAT+TGG + chr2.4:5959143-5959162 MS.gene31093:CDS 45.0%
AGATAGACTCTTTGGGTGGA+TGG + chr2.4:5957968-5957987 MS.gene31093:CDS 45.0%
AGGAAGGAAGGCTTCATTGA+AGG + chr2.4:5960750-5960769 MS.gene31093:CDS 45.0%
AGGAAGGCTTCATTGAAGGA+AGG + chr2.4:5960754-5960773 MS.gene31093:CDS 45.0%
ATAGTTGGCAAACACCTCCA+GGG + chr2.4:5958020-5958039 MS.gene31093:CDS 45.0%
ATGACTCGAGCAGTGTTCTT+TGG - chr2.4:5960090-5960109 None:intergenic 45.0%
ATGAGGTGAATGTGTCCCTA+AGG + chr2.4:5958174-5958193 MS.gene31093:CDS 45.0%
ATGAGTACAACCCTAGTGGT+AGG + chr2.4:5960695-5960714 MS.gene31093:CDS 45.0%
CAATTTGGAAGAGAGTGGGA+TGG + chr2.4:5957855-5957874 MS.gene31093:CDS 45.0%
CACAGGGCAGTAACTTTCAA+TGG - chr2.4:5957801-5957820 None:intergenic 45.0%
CATTGAAAGTTACTGCCCTG+TGG + chr2.4:5957799-5957818 MS.gene31093:CDS 45.0%
CGAACTTATTTCCCGTGAGA+AGG + chr2.4:5958542-5958561 MS.gene31093:CDS 45.0%
CTAAGGATCATGAAAAGGCC+AGG + chr2.4:5958496-5958515 MS.gene31093:CDS 45.0%
CTCCAATTCCAATGCCTGTT+TGG - chr2.4:5959154-5959173 None:intergenic 45.0%
CTCTTAGCTGCTTCCAGAAA+TGG - chr2.4:5960150-5960169 None:intergenic 45.0%
CTGTGGTAAGAGGGATTACT+TGG + chr2.4:5957923-5957942 MS.gene31093:CDS 45.0%
GAAGTTAGAGAGGAGCTTTC+AGG + chr2.4:5957893-5957912 MS.gene31093:CDS 45.0%
GAATGATGCTGAGGGTCATT+TGG + chr2.4:5957623-5957642 MS.gene31093:CDS 45.0%
GACAGCTAGCAAGTATGATG+AGG + chr2.4:5958157-5958176 MS.gene31093:CDS 45.0%
GAGACATGCATCCAGAATTG+TGG + chr2.4:5957422-5957441 MS.gene31093:CDS 45.0%
GGAAAAGGAAGAGGAACTAG+AGG + chr2.4:5959272-5959291 MS.gene31093:CDS 45.0%
GGAAAGAAGCTGAGGACAAT+AGG + chr2.4:5958069-5958088 MS.gene31093:CDS 45.0%
GGAAGATCTTCAACAAACGC+TGG + chr2.4:5959299-5959318 MS.gene31093:CDS 45.0%
GGTACCCAATACCAGAACTT+TGG + chr2.4:5960716-5960735 MS.gene31093:CDS 45.0%
GTATTGGGTACCTACCACTA+GGG - chr2.4:5960708-5960727 None:intergenic 45.0%
GTGTTCATGAGAGGGTCAAA+AGG - chr2.4:5958689-5958708 None:intergenic 45.0%
GTTGTTTGTATGGCCATGGA+TGG + chr2.4:5957671-5957690 MS.gene31093:CDS 45.0%
TACCTTAAAGCTGAAGACCG+AGG + chr2.4:5958124-5958143 MS.gene31093:CDS 45.0%
TATAGTTGGCAAACACCTCC+AGG + chr2.4:5958019-5958038 MS.gene31093:CDS 45.0%
TGACAAAGAAGGGAACTCCA+AGG + chr2.4:5960311-5960330 MS.gene31093:CDS 45.0%
TGACTCGAGCAGTGTTCTTT+GGG - chr2.4:5960089-5960108 None:intergenic 45.0%
TGTTGCTAAGCATTCAGCTC+TGG + chr2.4:5957470-5957489 MS.gene31093:CDS 45.0%
TTCCTCGGTCTTCAGCTTTA+AGG - chr2.4:5958129-5958148 None:intergenic 45.0%
TTGGAGATAGAACGGCTGAA+AGG + chr2.4:5959168-5959187 MS.gene31093:CDS 45.0%
TTTCCCTGCTATGAGCTGTA+TGG + chr2.4:5960540-5960559 MS.gene31093:intron 45.0%
! ACTTTGAAAGGATGCCAGCT+TGG - chr2.4:5960285-5960304 None:intergenic 45.0%
! CTGTCCGTTTTGCTACAACA+AGG + chr2.4:5957374-5957393 MS.gene31093:CDS 45.0%
! TCAACAAACGCTGGTTGTTC+AGG + chr2.4:5959308-5959327 MS.gene31093:CDS 45.0%
!! CACGAGCTTGTTCCGATTTT+TGG - chr2.4:5957260-5957279 None:intergenic 45.0%
!! GAGGGATTACTTGGCTTTAC+GGG + chr2.4:5957932-5957951 MS.gene31093:CDS 45.0%
!! TGCCAAACAGGCATTGGAAT+TGG + chr2.4:5959149-5959168 MS.gene31093:CDS 45.0%
!! TGTTTCTGGGAAAGAAGCTG+AGG + chr2.4:5958061-5958080 MS.gene31093:CDS 45.0%
AAAGCGAGGAAGCTTCTCTC+TGG + chr2.4:5958092-5958111 MS.gene31093:CDS 50.0%
AATTGTGGGTGACTCAGGTG+AGG + chr2.4:5957437-5957456 MS.gene31093:CDS 50.0%
ACCTGAGTCACCCACAATTC+TGG - chr2.4:5957436-5957455 None:intergenic 50.0%
ACTGCCCTGTGGAACTTTAG+AGG + chr2.4:5957810-5957829 MS.gene31093:CDS 50.0%
AGCAATCAGAATGGAGCTGC+AGG + chr2.4:5959251-5959270 MS.gene31093:CDS 50.0%
AGCGGGGAGATAGACTCTTT+GGG + chr2.4:5957961-5957980 MS.gene31093:CDS 50.0%
AGCTGTCTGCTCCAATTCCT+CGG - chr2.4:5958144-5958163 None:intergenic 50.0%
AGGAGGAGCTGATCATGAAC+GGG + chr2.4:5957769-5957788 MS.gene31093:CDS 50.0%
CAAACACCTCCAGGGAAATG+GGG + chr2.4:5958028-5958047 MS.gene31093:CDS 50.0%
CAATCGAGTGGTGCTCAAAG+TGG + chr2.4:5960241-5960260 MS.gene31093:CDS 50.0%
CAGAATGGAGCTGCAGGAAA+AGG + chr2.4:5959257-5959276 MS.gene31093:CDS 50.0%
CTGAGGACAATAGGAAAGCG+AGG + chr2.4:5958078-5958097 MS.gene31093:CDS 50.0%
CTTCTGCAGATCCTTCTCAC+GGG - chr2.4:5958556-5958575 None:intergenic 50.0%
GAAGGATGATTTCGGGGATG+AGG + chr2.4:5960636-5960655 MS.gene31093:CDS 50.0%
GAGAGGACTTGATGCCAAAC+AGG + chr2.4:5959137-5959156 MS.gene31093:CDS 50.0%
GAGGAAGCTTCTCTCTGGTT+TGG + chr2.4:5958097-5958116 MS.gene31093:CDS 50.0%
GCAAACACCTCCAGGGAAAT+GGG + chr2.4:5958027-5958046 MS.gene31093:CDS 50.0%
GCTTCTGCAGATCCTTCTCA+CGG - chr2.4:5958557-5958576 None:intergenic 50.0%
GGTCCATACAGCTCATAGCA+GGG - chr2.4:5960546-5960565 None:intergenic 50.0%
TCAAATCCCCATTTCCCTGG+AGG - chr2.4:5958037-5958056 None:intergenic 50.0%
TCCAGAATTGTGGGTGACTC+AGG + chr2.4:5957432-5957451 MS.gene31093:CDS 50.0%
TGGTCCATACAGCTCATAGC+AGG - chr2.4:5960547-5960566 None:intergenic 50.0%
TGTGTCCCTAAGGAAAGCGA+TGG + chr2.4:5958184-5958203 MS.gene31093:CDS 50.0%
! GGTATTGGGTACCTACCACT+AGG - chr2.4:5960709-5960728 None:intergenic 50.0%
! TGCAGTAGCTACAGCTCTGA+AGG + chr2.4:5960666-5960685 MS.gene31093:CDS 50.0%
!! TTACTTGGCTTTACGGGAGC+AGG + chr2.4:5957938-5957957 MS.gene31093:CDS 50.0%
ACGGCTGAAAGGAGCTTTCC+AGG + chr2.4:5959179-5959198 MS.gene31093:CDS 55.0%
AGAGATCAGCAAGATGCGGC+AGG + chr2.4:5958446-5958465 MS.gene31093:intron 55.0%
CCAGGCTGGAACTAGAAGCT+CGG + chr2.4:5958514-5958533 MS.gene31093:CDS 55.0%
GAGCGGGGAGATAGACTCTT+TGG + chr2.4:5957960-5957979 MS.gene31093:CDS 55.0%
GCAAAACGGACAGCGATACG+TGG - chr2.4:5957367-5957386 None:intergenic 55.0%
GGAAGAGGAACTAGAGGGTG+TGG + chr2.4:5959278-5959297 MS.gene31093:CDS 55.0%
GGAGCTGCAGGAAAAGGAAG+AGG + chr2.4:5959263-5959282 MS.gene31093:CDS 55.0%
GGATCATGAAAAGGCCAGGC+TGG + chr2.4:5958500-5958519 MS.gene31093:CDS 55.0%
GGCAAACACCTCCAGGGAAA+TGG + chr2.4:5958026-5958045 MS.gene31093:CDS 55.0%
GGGGAGATAGACTCTTTGGG+TGG + chr2.4:5957964-5957983 MS.gene31093:CDS 55.0%
TGGCATCAAGTCCTCTCTCC+AGG - chr2.4:5959134-5959153 None:intergenic 55.0%
! GCAGGTTGAACGCGAATACC+AGG + chr2.4:5958464-5958483 MS.gene31093:CDS 55.0%
!! AGCTTTCAGGCAGAGCACTG+TGG + chr2.4:5957906-5957925 MS.gene31093:CDS 55.0%
!! AGGCAGAGCACTGTGGTAAG+AGG + chr2.4:5957913-5957932 MS.gene31093:CDS 55.0%
!! GGCAGAGCACTGTGGTAAGA+GGG + chr2.4:5957914-5957933 MS.gene31093:CDS 55.0%
GGCTGGAACTAGAAGCTCGG+AGG + chr2.4:5958517-5958536 MS.gene31093:CDS 60.0%
! TGGCTTTACGGGAGCAGGAG+CGG + chr2.4:5957943-5957962 MS.gene31093:CDS 60.0%
!! CCGAGCTTCTAGTTCCAGCC+TGG - chr2.4:5958517-5958536 None:intergenic 60.0%
GCTTTACGGGAGCAGGAGCG+GGG + chr2.4:5957945-5957964 MS.gene31093:CDS 65.0%
GGCTTTACGGGAGCAGGAGC+GGG + chr2.4:5957944-5957963 MS.gene31093:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 5957252 5960831 5957252 ID=MS.gene31093
chr2.4 mRNA 5957252 5960831 5957252 ID=MS.gene31093.t1;Parent=MS.gene31093
chr2.4 exon 5957252 5958242 5957252 ID=MS.gene31093.t1.exon1;Parent=MS.gene31093.t1
chr2.4 CDS 5957252 5958242 5957252 ID=cds.MS.gene31093.t1;Parent=MS.gene31093.t1
chr2.4 exon 5958448 5958629 5958448 ID=MS.gene31093.t1.exon2;Parent=MS.gene31093.t1
chr2.4 CDS 5958448 5958629 5958448 ID=cds.MS.gene31093.t1;Parent=MS.gene31093.t1
chr2.4 exon 5958935 5959003 5958935 ID=MS.gene31093.t1.exon3;Parent=MS.gene31093.t1
chr2.4 CDS 5958935 5959003 5958935 ID=cds.MS.gene31093.t1;Parent=MS.gene31093.t1
chr2.4 exon 5959096 5959380 5959096 ID=MS.gene31093.t1.exon4;Parent=MS.gene31093.t1
chr2.4 CDS 5959096 5959380 5959096 ID=cds.MS.gene31093.t1;Parent=MS.gene31093.t1
chr2.4 exon 5960075 5960332 5960075 ID=MS.gene31093.t1.exon5;Parent=MS.gene31093.t1
chr2.4 CDS 5960075 5960332 5960075 ID=cds.MS.gene31093.t1;Parent=MS.gene31093.t1
chr2.4 exon 5960598 5960831 5960598 ID=MS.gene31093.t1.exon6;Parent=MS.gene31093.t1
chr2.4 CDS 5960598 5960831 5960598 ID=cds.MS.gene31093.t1;Parent=MS.gene31093.t1
Gene Sequence

>MS.gene31093

ATGTACCAAAAATCGGAACAAGCTCGTGAGTCTGATTTGGAGTACTACAAGCGTAGATATTATGAAGACCTGAAGGATGATTACTACAAGGAAACGCTCAAAATCTCTGATTCCACGTATCGCTGTCCGTTTTGCTACAACAAGGATTACTACTCTTTGAGTGAGCTATTGAGACATGCATCCAGAATTGTGGGTGACTCAGGTGAGGCAGTTAAAGATGTTGCTAAGCATTCAGCTCTGGAAATGTATATTGAAAGCTATGGTGATAAGTTAACTGCTGTTACCATTGATAATGATAAGACCCCTGGTGTTAGTATTGTTAATGATAAGTCGGTTAATTTGAGTATCGCTAATGAGAAGTCACTTATTATGAATGATGCTGAGGGTCATTTGGGTAATGTGAATGATGATGATGATGAGTTGTTTGTATGGCCATGGATGGTGATTTTGAAAAATATTGTTACTCATATTGACCCAAAAAGTGGAAAGTATGTTGGGAAGAATCATAAAAAAATTAAGGAGGAGCTGATCATGAACGGGTTTCACCCATTGAAAGTTACTGCCCTGTGGAACTTTAGAGGACAAACACCCTTTGCAGTTGTTCAATTTGGAAGAGAGTGGGATGGTTTCCACAATGCTATGAAGTTAGAGAGGAGCTTTCAGGCAGAGCACTGTGGTAAGAGGGATTACTTGGCTTTACGGGAGCAGGAGCGGGGAGATAGACTCTTTGGGTGGATGGCACGTCGTGATGACTATAATTTCAAAGATATAGTTGGCAAACACCTCCAGGGAAATGGGGATTTGAAAACTGTTTCTGGGAAAGAAGCTGAGGACAATAGGAAAGCGAGGAAGCTTCTCTCTGGTTTGGCCAATACCTTAAAGCTGAAGACCGAGGAATTGGAGCAGACAGCTAGCAAGTATGATGAGGTGAATGTGTCCCTAAGGAAAGCGATGGATCAAAAGGAAAAGATGCTTGAACATTTCAATAAGGGTATGTTGATAGTTAAACTGAACTGTTCTAATTAATATTGGTTAATATTGGTGTTCTGTTTCTTTGATTTAGAGGTGAAACATTCTGGTTTTTACTACTATATCATTTTGGTGTAGCTTACAGTCTGTTACATTTTGGAATGATTTGTAGTTGATTTGATTTTTTAATACTTCATGGTAGCTTCTGTTTTATATTGTTTCATTAGAGATCAGCAAGATGCGGCAGGTTGAACGCGAATACCAGGAGAAAGTATCTAAGGATCATGAAAAGGCCAGGCTGGAACTAGAAGCTCGGAGGAACGAACTTATTTCCCGTGAGAAGGATCTGCAGAAGCGTGAAGCAGATAATCACAATGAGAAAACCAAGCTATATTTTGAGAAGAAACATGTAATATATTTCTGGTCTTTTAATTTATGATAGCAATGCTAAATGAATTATTCTTTCCTTTTGACCCTCTCATGAACACACTTTTGTGATGGGTCAATTTCTAAAATTTTAACACATTTCTTTGTAAGTGATCAATTTGCAGGAGAACTAAATTTGCTTCTTTAAAATGGACCAATCACAAAAAGTGTTGTTAGCATTCCTTACTCTATGGACCATTTGGTCTTTTGTATCAAATGTTTTACACTCCCTGTTATTTTTCAATAACTTATGCAGATTAAATCTGTTCTTCATCTTGTTGTTTACAGAATGAGATGGCAATAGAAGAGCAACAAAAGGCTGATGAAAAAATGATGTCTTTGGCTGAAGAACATAAGGCACACATTTCATTTTCCTTTTATCTACAGTTTTTAATTCAGTTGCATGTATATGCTTAAGTTTTGAGGACTCTTTTGGTTGGATGTTGCAGAAAGAAAAAGAGAAACTTCACAAGAAAATTCATGACCTGGAGAGAGGACTTGATGCCAAACAGGCATTGGAATTGGAGATAGAACGGCTGAAAGGAGCTTTCCAGGTAATGAATCACATTGGAGAGACTGATATGGATGAGAAGAAAAAATTGGAAGCAATCAGAATGGAGCTGCAGGAAAAGGAAGAGGAACTAGAGGGTGTGGAAGATCTTCAACAAACGCTGGTTGTTCAGGAGCGCAAAACTAATGACGAATTGCAAGATGCCCGCAAAAAGTTAATAGCTGTATGTATCTTCCTCAGCATATAAATGTTAATATTAATGTCTTTTGGCCATCAACTCATCTAATGGTCTGAAAATCAACTTTAAAATGTCTTCTGTAACTAATCTTTTACAAAGTCAGGATAGATTGTTTTATTTGTATAAATTGCCTTGTAAAACTTAAGCAGAAATGTAGGGTCATTTATATTTTTTAATTGACATACAACTGTTTATATAAAAATGCTACTGAAAGAAAAGTGTCCTGTTTGCAAACATTCAAATCATGTAGTTGAAATCTTATTTAAGTTGCTTGGAAGACAATGTCTTGTTCACATGTATTTACAATGGCCAATACAAATTTTCGGTGTTTTCAATTCAGTTTCTATAACTAAGGAATTTCACTTTATCAGCGTATCATCTTATGATGTGAATAACTTGGTTGCTTGTCTAAACTGTCTATTAGCTATCCAGTTGTTTGTGTCCATAAAGTTTTACATTTTAGGTGAAAATTGGTAGAATCAGGTCAGGTCTACGAAAAGAGCAGATTTTGTTTTTACATTTTCAGTTAATTTGTCATATTGTTTCATACTGGTTCAATCATAAGGTATCTGATGCCTAAACTTGAAGCAAAATAAGTTCAAGCAGTTTGTTCCTGTTGCATTGTTGCCATGATTTCATTGTTTGTTTTGTCCAATTAATTACTTTTACTTGTGCACAGTGGATTGGCTGCCCAAAGAACACTGCTCGAGTCATAATTTCTGTGAAAAGGATGGGCGAACTTGATATTAAGCCATTTCTGGAAGCAGCTAAGAGAAAATTTTCTGATGAAATGAATGAGAAAGCAGTAACTAAGAGAGAATTTTCAGAGAAGGTGCAAATGAAAGCAATCGAGTGGTGCTCAAAGTGGGATGACTTTGTTAAGGATCCAAGCTGGCATCCTTTCAAAGTTGTAACTGACAAAGAAGGGAACTCCAAGGTACAATGACTTCACGAATTATGTTTGTTCGTTAAAATTAATATTTGTTCTCAACTGTTCTGTTAAGACACACCTTTGGATATATTTATCTCCTAAAATATATAATGCACCATTTCTTAATAATTAGAAAGCATGGTAATTGGTATTGTGTAGTGATCTATTATTTACTGGAAATTTGCTGGTGTTAGCACTTATTTGGCATGTTTGTTTCCCTGCTATGAGCTGTATGGACCATGATCTAATATATGTTCAACATATCACACAGGAAATTTTAGACGGAGAAGATAAAAAGCTGAAAAGTTTGAAGGATGATTTCGGGGATGAGGTGCATGATGCAGTAGCTACAGCTCTGAAGGAGTTAAATGAGTACAACCCTAGTGGTAGGTACCCAATACCAGAACTTTGGAATTTTAGGGAAGGAAGGAAGGCTTCATTGAAGGAAGGTGTTTCCCATTTAATTAAACAATGGAAATTAAATAAGGGAAAGAAAGCTTATTGA
Protein sequence

>MS.gene31093.t1

MYQKSEQARESDLEYYKRRYYEDLKDDYYKETLKISDSTYRCPFCYNKDYYSLSELLRHASRIVGDSGEAVKDVAKHSALEMYIESYGDKLTAVTIDNDKTPGVSIVNDKSVNLSIANEKSLIMNDAEGHLGNVNDDDDELFVWPWMVILKNIVTHIDPKSGKYVGKNHKKIKEELIMNGFHPLKVTALWNFRGQTPFAVVQFGREWDGFHNAMKLERSFQAEHCGKRDYLALREQERGDRLFGWMARRDDYNFKDIVGKHLQGNGDLKTVSGKEAEDNRKARKLLSGLANTLKLKTEELEQTASKYDEVNVSLRKAMDQKEKMLEHFNKEISKMRQVEREYQEKVSKDHEKARLELEARRNELISREKDLQKREADNHNEKTKLYFEKKHNEMAIEEQQKADEKMMSLAEEHKKEKEKLHKKIHDLERGLDAKQALELEIERLKGAFQVMNHIGETDMDEKKKLEAIRMELQEKEEELEGVEDLQQTLVVQERKTNDELQDARKKLIAWIGCPKNTARVIISVKRMGELDIKPFLEAAKRKFSDEMNEKAVTKREFSEKVQMKAIEWCSKWDDFVKDPSWHPFKVVTDKEGNSKEILDGEDKKLKSLKDDFGDEVHDAVATALKELNEYNPSGRYPIPELWNFREGRKASLKEGVSHLIKQWKLNKGKKAY