AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31183

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31183.t1 MTR_2g096210 97.009 468 12 2 1 466 13 480 0.0 939
MS.gene31183.t1 MTR_4g062270 71.335 457 120 3 1 456 13 459 0.0 707
MS.gene31183.t1 MTR_4g062170 72.570 463 122 3 1 462 13 471 0.0 702
MS.gene31183.t1 MTR_4g062190 70.259 464 132 3 1 462 13 472 0.0 685
MS.gene31183.t1 MTR_1g115560 54.566 449 184 5 13 447 26 468 0.0 516
MS.gene31183.t1 MTR_7g118170 44.186 430 221 6 14 436 117 534 5.95e-123 369
MS.gene31183.t1 MTR_3g105550 40.047 427 233 5 15 430 119 533 4.96e-110 336
MS.gene31183.t1 MTR_1g076430 41.379 435 233 8 3 432 88 505 6.15e-110 335
MS.gene31183.t1 MTR_1g110930 40.553 434 238 7 3 432 72 489 4.68e-109 332
MS.gene31183.t1 MTR_5g056510 41.055 436 234 7 4 432 70 489 9.13e-109 331
MS.gene31183.t1 MTR_4g070270 40.000 420 232 5 15 430 96 499 4.86e-108 330
MS.gene31183.t1 MTR_2g054940 39.906 426 225 6 15 430 98 502 3.54e-106 325
MS.gene31183.t1 MTR_1g041085 39.007 423 237 4 15 432 105 511 5.58e-105 322
MS.gene31183.t1 MTR_7g118160 43.169 366 180 6 79 432 69 418 1.56e-100 308
MS.gene31183.t1 MTR_4g054415 37.793 426 243 5 11 430 13 422 7.42e-99 303
MS.gene31183.t1 MTR_4g054630 37.793 426 243 5 11 430 54 463 1.38e-98 304
MS.gene31183.t1 MTR_4g113280 37.767 421 230 6 15 430 87 480 1.78e-97 302
MS.gene31183.t1 MTR_2g007020 40.048 417 236 4 15 430 45 448 2.50e-97 300
MS.gene31183.t1 MTR_7g081695 38.425 419 225 5 17 430 100 490 2.30e-95 304
MS.gene31183.t1 MTR_6g074880 38.955 421 227 10 20 430 65 465 1.62e-94 293
MS.gene31183.t1 MTR_2g436480 36.967 422 251 5 11 430 40 448 1.80e-91 285
MS.gene31183.t1 MTR_6g032965 39.378 386 211 5 52 430 12 381 2.37e-90 280
MS.gene31183.t1 MTR_2g013740 35.784 408 243 4 17 422 110 500 3.66e-88 278
MS.gene31183.t1 MTR_1g102290 37.647 425 237 8 15 430 78 483 5.08e-86 272
MS.gene31183.t1 MTR_3g072940 37.055 421 234 8 20 430 83 482 1.69e-82 263
MS.gene31183.t1 MTR_3g072980 37.055 421 234 8 20 430 83 482 1.80e-82 263
MS.gene31183.t1 MTR_6g051440 37.352 423 230 8 20 430 82 481 9.24e-78 251
MS.gene31183.t1 MTR_4g054260 38.806 268 126 5 169 430 87 322 3.15e-54 184
MS.gene31183.t1 MTR_4g053905 37.870 169 85 3 267 430 3 156 2.24e-32 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31183.t1 AT2G28630 66.079 454 149 3 7 456 19 471 0.0 634
MS.gene31183.t1 AT2G28630 66.079 454 149 3 7 456 19 471 0.0 634
MS.gene31183.t1 AT1G07720 65.096 467 144 4 2 456 57 516 0.0 628
MS.gene31183.t1 AT1G07720 65.096 467 144 4 2 456 14 473 0.0 627
MS.gene31183.t1 AT5G04530 53.244 447 196 5 5 447 18 455 7.58e-180 511
MS.gene31183.t1 AT1G01120 42.958 426 213 6 15 430 118 523 7.11e-122 366
MS.gene31183.t1 AT2G46720 38.710 434 249 6 3 432 44 464 1.19e-110 335
MS.gene31183.t1 AT4G34510 41.080 426 228 5 11 430 74 482 2.44e-110 335
MS.gene31183.t1 AT1G25450 41.435 432 233 7 3 430 68 483 4.84e-109 332
MS.gene31183.t1 AT4G34520 39.723 433 226 6 15 430 73 487 4.49e-108 330
MS.gene31183.t1 AT2G15090 38.182 440 248 7 1 430 51 476 3.72e-107 327
MS.gene31183.t1 AT2G16280 40.000 425 225 6 15 430 104 507 6.97e-107 327
MS.gene31183.t1 AT1G19440 38.353 425 232 6 15 430 108 511 4.25e-106 325
MS.gene31183.t1 AT2G26640 40.411 438 233 8 1 430 83 500 1.12e-105 323
MS.gene31183.t1 AT5G43760 40.749 427 226 7 15 430 107 517 2.35e-105 323
MS.gene31183.t1 AT4G34250 38.426 432 228 6 15 430 75 484 4.10e-105 322
MS.gene31183.t1 AT1G68530 40.573 419 231 7 15 430 85 488 1.45e-104 320
MS.gene31183.t1 AT3G10280 36.952 433 251 5 3 432 44 457 6.84e-104 317
MS.gene31183.t1 AT1G04220 38.864 440 240 8 3 430 90 512 1.63e-103 319
MS.gene31183.t1 AT2G26250 36.009 436 254 5 15 430 117 547 2.94e-99 308
MS.gene31183.t1 AT5G49070 37.176 425 255 4 6 430 40 452 4.58e-95 295
MS.gene31183.t1 AT1G71160 36.983 411 246 3 20 430 48 445 3.60e-93 290
MS.gene31183.t1 AT3G52160 31.796 412 236 4 4 414 73 440 3.22e-75 243
MS.gene31183.t1 AT3G52160 34.270 356 189 4 60 414 16 327 2.87e-71 229
MS.gene31183.t1 AT1G68530 38.007 271 161 3 15 282 85 351 5.74e-58 196
MS.gene31183.t1 AT5G49070 31.183 279 189 2 3 281 37 312 1.98e-40 147

Find 74 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATGCAACAGTTGTTAT+TGG 0.230294 2.1:+7272894 MS.gene31183:CDS
CTTAGTACAAATTGGTATTC+AGG 0.248106 2.1:+7272248 MS.gene31183:CDS
AAAGCTCTTGTAGCTGCTTT+TGG 0.259427 2.1:-7272485 None:intergenic
TACCAGCTAGGGAAATATTT+AGG 0.265669 2.1:+7272543 MS.gene31183:CDS
ATGACATTCTTGCTGGTTCT+AGG 0.278483 2.1:-7272754 None:intergenic
CGGCCTTCGATGAAGTTTCT+TGG 0.294675 2.1:-7271912 None:intergenic
GTGGTATGTGTTGGGGTATA+TGG 0.299234 2.1:+7272811 MS.gene31183:CDS
GAACAATGTGGCAAGATTAT+AGG 0.312551 2.1:+7271804 MS.gene31183:CDS
TTACTATCCACCACACTCTT+TGG 0.331528 2.1:+7272973 MS.gene31183:CDS
CCAAGCTTTCTTTCATCACT+TGG 0.337997 2.1:-7271777 None:intergenic
CCATCGTTGGGTTCACAGTT+CGG 0.347303 2.1:-7271932 None:intergenic
TCCACTTCGTCTTCCATCGT+TGG 0.351430 2.1:-7271945 None:intergenic
CAGAGTCTCTTAGTACAAAT+TGG 0.351617 2.1:+7272240 MS.gene31183:CDS
ATAAAAGCTTATAACCTATC+TGG 0.357029 2.1:+7272128 MS.gene31183:CDS
AGAATGTCATTACATAGATT+TGG 0.358478 2.1:+7272767 MS.gene31183:CDS
TGCACTTGTGTTTCCTGATC+TGG 0.359947 2.1:+7271694 MS.gene31183:CDS
TAAATGCAACAGTTGTTATT+GGG 0.360260 2.1:+7272895 MS.gene31183:CDS
AGTTTGAGTTTGAAAGTGTT+TGG 0.363208 2.1:-7273043 None:intergenic
CTCTTTGGCCAACCCATTCA+TGG 0.371696 2.1:+7272988 MS.gene31183:CDS
CTATGTAATGACATTCTTGC+TGG 0.374650 2.1:-7272761 None:intergenic
AAGCAGTGATAGATGGTATT+GGG 0.387136 2.1:+7272705 MS.gene31183:CDS
CCACTTCGTCTTCCATCGTT+GGG 0.388821 2.1:-7271944 None:intergenic
CAACCGTACTTCTCCATGAA+TGG 0.401060 2.1:-7273001 None:intergenic
GGAAGACGAAGTGGAGGAAA+TGG 0.412780 2.1:+7271953 MS.gene31183:CDS
AGCTTATAACCTATCTGGTA+TGG 0.425685 2.1:+7272133 MS.gene31183:CDS
GCAAAGCTTCTAAACAAATC+AGG 0.429501 2.1:+7271999 MS.gene31183:CDS
ATAGGAAACAATGAGAATAT+TGG 0.429933 2.1:+7271822 MS.gene31183:CDS
CTGAGTTGACAACGGCTTTG+AGG 0.431728 2.1:-7271866 None:intergenic
TCACCAGTGAATTTCAAAAC+TGG 0.431886 2.1:+7272650 MS.gene31183:CDS
AAGTCAGCTGCAAGATGGTT+TGG 0.438277 2.1:+7272614 MS.gene31183:CDS
AGAGTATTGATGATAAGTTT+AGG 0.443493 2.1:+7272863 MS.gene31183:CDS
ATGATTCTTGAAGTTAAAGA+AGG 0.444901 2.1:-7272080 None:intergenic
AAAGCAGTGATAGATGGTAT+TGG 0.447144 2.1:+7272704 MS.gene31183:CDS
TACCTAAATATTTCCCTAGC+TGG 0.449686 2.1:-7272545 None:intergenic
AGTAGTTTGTGGTATGTGTT+GGG 0.450299 2.1:+7272803 MS.gene31183:CDS
CAAATCAGGCATTTCACCTT+CGG 0.453132 2.1:+7272013 MS.gene31183:CDS
CCAAGTGATGAAAGAAAGCT+TGG 0.482158 2.1:+7271777 MS.gene31183:CDS
CTCAAAGCCGTTGTCAACTC+AGG 0.488420 2.1:+7271867 MS.gene31183:CDS
GGAGGAAAAGCAGTGATAGA+TGG 0.488609 2.1:+7272698 MS.gene31183:CDS
AACCGTACTTCTCCATGAAT+GGG 0.497250 2.1:-7273000 None:intergenic
GAAGATGAACAAGGTAAACT+TGG 0.499726 2.1:+7272440 MS.gene31183:CDS
AACCATCTTGCAGCTGACTT+AGG 0.502261 2.1:-7272611 None:intergenic
AGTTTAATATGTAACACTCT+TGG 0.508115 2.1:-7271740 None:intergenic
CTCCTAAGTCAGCTGCAAGA+TGG 0.509644 2.1:+7272609 MS.gene31183:CDS
TTGATGATAAGTTTAGGTGC+TGG 0.511949 2.1:+7272869 MS.gene31183:CDS
AAGTAGTTTGTGGTATGTGT+TGG 0.515984 2.1:+7272802 MS.gene31183:CDS
GCCGTTGTCAACTCAGGCAT+TGG 0.520687 2.1:+7271873 MS.gene31183:CDS
GAAGTAATGAGAGATGTTGT+TGG 0.523138 2.1:+7272917 MS.gene31183:CDS
CACTACAACCCATACCAGAT+AGG 0.541455 2.1:-7272142 None:intergenic
GCTTATAACCTATCTGGTAT+GGG 0.546638 2.1:+7272134 MS.gene31183:CDS
ACACATCAGCAAGTAGTTTG+TGG 0.547190 2.1:+7272792 MS.gene31183:CDS
GAATTGCACAACCGCCGGTA+CGG 0.562704 2.1:-7272307 None:intergenic
TTCGGAGATCGATATTCTTG+TGG 0.562977 2.1:+7272031 MS.gene31183:CDS
CATTCATGGAGAAGTACGGT+TGG 0.595870 2.1:+7273002 MS.gene31183:CDS
TGTCTAGTTAGAACTCATCA+TGG 0.608151 2.1:+7272380 MS.gene31183:CDS
AACCCATTCATGGAGAAGTA+CGG 0.611169 2.1:+7272998 MS.gene31183:CDS
GTACTTCTCCATGAATGGGT+TGG 0.611489 2.1:-7272996 None:intergenic
AACGATGGAAGACGAAGTGG+AGG 0.619961 2.1:+7271947 MS.gene31183:CDS
GGTATATGGAAGCTAAGAAG+AGG 0.621077 2.1:+7272825 MS.gene31183:CDS
TACGGAAAAGACAATTTGCA+AGG 0.623230 2.1:-7272289 None:intergenic
CCCAACGATGGAAGACGAAG+TGG 0.624451 2.1:+7271944 MS.gene31183:CDS
GCTCCAAGAAACTTCATCGA+AGG 0.628524 2.1:+7271909 MS.gene31183:CDS
GAGAAGAATTGCACAACCGC+CGG 0.629617 2.1:-7272312 None:intergenic
GTAGTTTGTGGTATGTGTTG+GGG 0.633510 2.1:+7272804 MS.gene31183:CDS
TAACCATTACAAAATGAGAG+AGG 0.653134 2.1:+7272103 MS.gene31183:CDS
TGTCAACTCAGGCATTGGTG+AGG 0.663337 2.1:+7271878 MS.gene31183:CDS
CCGAACTGTGAACCCAACGA+TGG 0.667415 2.1:+7271932 MS.gene31183:CDS
ACAAGAATATCGATCTCCGA+AGG 0.671733 2.1:-7272029 None:intergenic
TGGTGATGATAGAAATGTGT+GGG 0.672881 2.1:+7272937 MS.gene31183:CDS
ACCAATGCCTGAGTTGACAA+CGG 0.693257 2.1:-7271874 None:intergenic
AATGGGTTGGCCAAAGAGTG+TGG 0.696430 2.1:-7272983 None:intergenic
TTGGTGATGATAGAAATGTG+TGG 0.701014 2.1:+7272936 MS.gene31183:CDS
GGGTTGGCCAAAGAGTGTGG+TGG 0.735704 2.1:-7272980 None:intergenic
AAGCTTGGAAGTGAACAATG+TGG 0.752031 2.1:+7271792 MS.gene31183:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGCTTTTACTGATAATTTAA+GGG + chr2.1:7272502-7272521 MS.gene31183:CDS 20.0%
! AGAATGTCATTACATAGATT+TGG + chr2.1:7272767-7272786 MS.gene31183:CDS 25.0%
! AGTTTAATATGTAACACTCT+TGG - chr2.1:7271743-7271762 None:intergenic 25.0%
! ATAAAAGCTTATAACCTATC+TGG + chr2.1:7272128-7272147 MS.gene31183:CDS 25.0%
! ATAGGAAACAATGAGAATAT+TGG + chr2.1:7271822-7271841 MS.gene31183:CDS 25.0%
! ATGATTCTTGAAGTTAAAGA+AGG - chr2.1:7272083-7272102 None:intergenic 25.0%
! GAAAAAATTTGATCAGAGAA+GGG + chr2.1:7271716-7271735 MS.gene31183:CDS 25.0%
! TTAAATGCAACAGTTGTTAT+TGG + chr2.1:7272894-7272913 MS.gene31183:CDS 25.0%
!! GAGCTTTTACTGATAATTTA+AGG + chr2.1:7272501-7272520 MS.gene31183:CDS 25.0%
!! TAAATGCAACAGTTGTTATT+GGG + chr2.1:7272895-7272914 MS.gene31183:CDS 25.0%
!!! AGAGTATTGATGATAAGTTT+AGG + chr2.1:7272863-7272882 MS.gene31183:CDS 25.0%
AGTCAAAAAGAAGATGAACA+AGG + chr2.1:7272431-7272450 MS.gene31183:CDS 30.0%
CTTAGTACAAATTGGTATTC+AGG + chr2.1:7272248-7272267 MS.gene31183:CDS 30.0%
GGAAAAAATTTGATCAGAGA+AGG + chr2.1:7271715-7271734 MS.gene31183:CDS 30.0%
TAACCATTACAAAATGAGAG+AGG + chr2.1:7272103-7272122 MS.gene31183:CDS 30.0%
! ACCTAAAATTTTACCAGCTA+GGG + chr2.1:7272532-7272551 MS.gene31183:CDS 30.0%
! TATCCTCTCTCATTTTGTAA+TGG - chr2.1:7272109-7272128 None:intergenic 30.0%
!! AGTTTGAGTTTGAAAGTGTT+TGG - chr2.1:7273046-7273065 None:intergenic 30.0%
!!! CAGTATAGCTTTGTGTTTTA+AGG - chr2.1:7272351-7272370 None:intergenic 30.0%
!!! GATCAAATTTTTTCCAGATC+AGG - chr2.1:7271710-7271729 None:intergenic 30.0%
AAAGCAGTGATAGATGGTAT+TGG + chr2.1:7272704-7272723 MS.gene31183:CDS 35.0%
AAGCAGTGATAGATGGTATT+GGG + chr2.1:7272705-7272724 MS.gene31183:CDS 35.0%
AGCTTATAACCTATCTGGTA+TGG + chr2.1:7272133-7272152 MS.gene31183:CDS 35.0%
CAGAGTCTCTTAGTACAAAT+TGG + chr2.1:7272240-7272259 MS.gene31183:CDS 35.0%
CTATGTAATGACATTCTTGC+TGG - chr2.1:7272764-7272783 None:intergenic 35.0%
GAACAATGTGGCAAGATTAT+AGG + chr2.1:7271804-7271823 MS.gene31183:CDS 35.0%
GAAGATGAACAAGGTAAACT+TGG + chr2.1:7272440-7272459 MS.gene31183:CDS 35.0%
GAAGTAATGAGAGATGTTGT+TGG + chr2.1:7272917-7272936 MS.gene31183:CDS 35.0%
GCAAAGCTTCTAAACAAATC+AGG + chr2.1:7271999-7272018 MS.gene31183:CDS 35.0%
GCTAAGAAGAGGTTGAAAAA+AGG + chr2.1:7272836-7272855 MS.gene31183:CDS 35.0%
GCTTATAACCTATCTGGTAT+GGG + chr2.1:7272134-7272153 MS.gene31183:CDS 35.0%
TACCAGCTAGGGAAATATTT+AGG + chr2.1:7272543-7272562 MS.gene31183:CDS 35.0%
TACCTAAATATTTCCCTAGC+TGG - chr2.1:7272548-7272567 None:intergenic 35.0%
TACGGAAAAGACAATTTGCA+AGG - chr2.1:7272292-7272311 None:intergenic 35.0%
TCACCAGTGAATTTCAAAAC+TGG + chr2.1:7272650-7272669 MS.gene31183:CDS 35.0%
TGTCTAGTTAGAACTCATCA+TGG + chr2.1:7272380-7272399 MS.gene31183:CDS 35.0%
! AAGTAGTTTGTGGTATGTGT+TGG + chr2.1:7272802-7272821 MS.gene31183:CDS 35.0%
! AGTAGTTTGTGGTATGTGTT+GGG + chr2.1:7272803-7272822 MS.gene31183:CDS 35.0%
! CACCTAAAATTTTACCAGCT+AGG + chr2.1:7272531-7272550 MS.gene31183:CDS 35.0%
! TCCCTAGCTGGTAAAATTTT+AGG - chr2.1:7272536-7272555 None:intergenic 35.0%
! TGGTGATGATAGAAATGTGT+GGG + chr2.1:7272937-7272956 MS.gene31183:CDS 35.0%
! TTGATGATAAGTTTAGGTGC+TGG + chr2.1:7272869-7272888 MS.gene31183:CDS 35.0%
!! CTTTTGGAAGATCTTTAGCT+AGG - chr2.1:7272472-7272491 None:intergenic 35.0%
!! TTGGTGATGATAGAAATGTG+TGG + chr2.1:7272936-7272955 MS.gene31183:CDS 35.0%
!!! ACACCAGTTTTGAAATTCAC+TGG - chr2.1:7272656-7272675 None:intergenic 35.0%
AACCCATTCATGGAGAAGTA+CGG + chr2.1:7272998-7273017 MS.gene31183:CDS 40.0%
AACCGTACTTCTCCATGAAT+GGG - chr2.1:7273003-7273022 None:intergenic 40.0%
AAGCTTGGAAGTGAACAATG+TGG + chr2.1:7271792-7271811 MS.gene31183:CDS 40.0%
ACAAGAATATCGATCTCCGA+AGG - chr2.1:7272032-7272051 None:intergenic 40.0%
ACACATCAGCAAGTAGTTTG+TGG + chr2.1:7272792-7272811 MS.gene31183:CDS 40.0%
CAAATCAGGCATTTCACCTT+CGG + chr2.1:7272013-7272032 MS.gene31183:CDS 40.0%
CCAAGCTTTCTTTCATCACT+TGG - chr2.1:7271780-7271799 None:intergenic 40.0%
CCAAGTGATGAAAGAAAGCT+TGG + chr2.1:7271777-7271796 MS.gene31183:CDS 40.0%
GGTATATGGAAGCTAAGAAG+AGG + chr2.1:7272825-7272844 MS.gene31183:CDS 40.0%
TTACTATCCACCACACTCTT+TGG + chr2.1:7272973-7272992 MS.gene31183:CDS 40.0%
TTCGGAGATCGATATTCTTG+TGG + chr2.1:7272031-7272050 MS.gene31183:CDS 40.0%
! GATCATTTTGTTCTCCACAC+TGG + chr2.1:7272677-7272696 MS.gene31183:CDS 40.0%
! GCAAATTGTCTTTTCCGTAC+CGG + chr2.1:7272293-7272312 MS.gene31183:CDS 40.0%
! GTAGTTTGTGGTATGTGTTG+GGG + chr2.1:7272804-7272823 MS.gene31183:CDS 40.0%
!! AAAGCTCTTGTAGCTGCTTT+TGG - chr2.1:7272488-7272507 None:intergenic 40.0%
!! ATGACATTCTTGCTGGTTCT+AGG - chr2.1:7272757-7272776 None:intergenic 40.0%
AAGTCAGCTGCAAGATGGTT+TGG + chr2.1:7272614-7272633 MS.gene31183:CDS 45.0%
CAACCGTACTTCTCCATGAA+TGG - chr2.1:7273004-7273023 None:intergenic 45.0%
CACTACAACCCATACCAGAT+AGG - chr2.1:7272145-7272164 None:intergenic 45.0%
GCTCCAAGAAACTTCATCGA+AGG + chr2.1:7271909-7271928 MS.gene31183:CDS 45.0%
GGAGGAAAAGCAGTGATAGA+TGG + chr2.1:7272698-7272717 MS.gene31183:CDS 45.0%
GTACTTCTCCATGAATGGGT+TGG - chr2.1:7272999-7273018 None:intergenic 45.0%
GTGGTATGTGTTGGGGTATA+TGG + chr2.1:7272811-7272830 MS.gene31183:CDS 45.0%
TGCACTTGTGTTTCCTGATC+TGG + chr2.1:7271694-7271713 MS.gene31183:CDS 45.0%
! AACCATCTTGCAGCTGACTT+AGG - chr2.1:7272614-7272633 None:intergenic 45.0%
! AATTGTCTTTTCCGTACCGG+CGG + chr2.1:7272296-7272315 MS.gene31183:CDS 45.0%
! ACCAATGCCTGAGTTGACAA+CGG - chr2.1:7271877-7271896 None:intergenic 45.0%
! CATTCATGGAGAAGTACGGT+TGG + chr2.1:7273002-7273021 MS.gene31183:CDS 45.0%
! CATTTTGTTCTCCACACTGG+AGG + chr2.1:7272680-7272699 MS.gene31183:CDS 45.0%
AACGATGGAAGACGAAGTGG+AGG + chr2.1:7271947-7271966 MS.gene31183:CDS 50.0%
CCACTTCGTCTTCCATCGTT+GGG - chr2.1:7271947-7271966 None:intergenic 50.0%
CCATCGTTGGGTTCACAGTT+CGG - chr2.1:7271935-7271954 None:intergenic 50.0%
CGGCCTTCGATGAAGTTTCT+TGG - chr2.1:7271915-7271934 None:intergenic 50.0%
CTCAAAGCCGTTGTCAACTC+AGG + chr2.1:7271867-7271886 MS.gene31183:CDS 50.0%
CTCCTAAGTCAGCTGCAAGA+TGG + chr2.1:7272609-7272628 MS.gene31183:CDS 50.0%
CTCTTTGGCCAACCCATTCA+TGG + chr2.1:7272988-7273007 MS.gene31183:CDS 50.0%
GAGAAGAATTGCACAACCGC+CGG - chr2.1:7272315-7272334 None:intergenic 50.0%
GGAAGACGAAGTGGAGGAAA+TGG + chr2.1:7271953-7271972 MS.gene31183:CDS 50.0%
TCCACTTCGTCTTCCATCGT+TGG - chr2.1:7271948-7271967 None:intergenic 50.0%
! CTGAGTTGACAACGGCTTTG+AGG - chr2.1:7271869-7271888 None:intergenic 50.0%
!! AATGGGTTGGCCAAAGAGTG+TGG - chr2.1:7272986-7273005 None:intergenic 50.0%
!! TCACTGCTTTTCCTCCAGTG+TGG - chr2.1:7272694-7272713 None:intergenic 50.0%
!! TGTCAACTCAGGCATTGGTG+AGG + chr2.1:7271878-7271897 MS.gene31183:CDS 50.0%
CCCAACGATGGAAGACGAAG+TGG + chr2.1:7271944-7271963 MS.gene31183:CDS 55.0%
CCGAACTGTGAACCCAACGA+TGG + chr2.1:7271932-7271951 MS.gene31183:CDS 55.0%
GAATTGCACAACCGCCGGTA+CGG - chr2.1:7272310-7272329 None:intergenic 55.0%
GCCGTTGTCAACTCAGGCAT+TGG + chr2.1:7271873-7271892 MS.gene31183:CDS 55.0%
!! GGGTTGGCCAAAGAGTGTGG+TGG - chr2.1:7272983-7273002 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 7271693 7273093 7271693 ID=MS.gene31183
chr2.1 mRNA 7271693 7273093 7271693 ID=MS.gene31183.t1;Parent=MS.gene31183
chr2.1 exon 7271693 7273093 7271693 ID=MS.gene31183.t1.exon1;Parent=MS.gene31183.t1
chr2.1 CDS 7271693 7273093 7271693 ID=cds.MS.gene31183.t1;Parent=MS.gene31183.t1
Gene Sequence

>MS.gene31183

ATGCACTTGTGTTTCCTGATCTGGAAAAAATTTGATCAGAGAAGGGACCAAGAGTGTTACATATTAAACTATCAATGTTACAAGCCAAGTGATGAAAGAAAGCTTGGAAGTGAACAATGTGGCAAGATTATAGGAAACAATGAGAATATTGGTCTTGATGAGTGCAAGTTCTTCCTCAAAGCCGTTGTCAACTCAGGCATTGGTGAGGAAACTTATGCTCCAAGAAACTTCATCGAAGGCCGAACTGTGAACCCAACGATGGAAGACGAAGTGGAGGAAATGGAAGAGTTTTGTAATGATAGCATTGCAAAGCTTCTAAACAAATCAGGCATTTCACCTTCGGAGATCGATATTCTTGTGGTAAATGTATCTTTATTCTCTTCTGTGCCTTCTTTAACTTCAAGAATCATTAACCATTACAAAATGAGAGAGGATATAAAAGCTTATAACCTATCTGGTATGGGTTGTAGTGCTAGTCTAATCTCATTAGACGTTATTCAAAACATTTTCAAGTCACAAAAGAACAAGTATGCTCTTTTGTTAACATCAGAGTCTCTTAGTACAAATTGGTATTCAGGAAACAATAGATCAATGATCCTTGCAAATTGTCTTTTCCGTACCGGCGGTTGTGCAATTCTTCTCACAAATAAAAGATCCTTAAAACACAAAGCTATACTGAAGTTGAAGTGTCTAGTTAGAACTCATCATGGTGCTAGAGATGATGCTCATAACTGTTGTAGTCAAAAAGAAGATGAACAAGGTAAACTTGGTTTTTACCTAGCTAAAGATCTTCCAAAAGCAGCTACAAGAGCTTTTACTGATAATTTAAGGGTGTTATCACCTAAAATTTTACCAGCTAGGGAAATATTTAGGTATATGCTTATGTCACTCATAAAAAAAGTGATAAAATACTTTGCTCCTAAGTCAGCTGCAAGATGGTTTGGAACAAGTAACAAATCACCAGTGAATTTCAAAACTGGTGTTGATCATTTTGTTCTCCACACTGGAGGAAAAGCAGTGATAGATGGTATTGGGATGAGTTTAGATCTGAATGATTATGACCTAGAACCAGCAAGAATGTCATTACATAGATTTGGTAACACATCAGCAAGTAGTTTGTGGTATGTGTTGGGGTATATGGAAGCTAAGAAGAGGTTGAAAAAAGGTGAGAGAGTATTGATGATAAGTTTAGGTGCTGGCTTTAAATGCAACAGTTGTTATTGGGAAGTAATGAGAGATGTTGTTGGTGATGATAGAAATGTGTGGGACGATTGCATTGATTACTATCCACCACACTCTTTGGCCAACCCATTCATGGAGAAGTACGGTTGGATTAACAACATTCAAGATCCAAACACTTTCAAACTCAAACTTGCTGAGTTTCTTCTCAGTCTTAAGTGA
Protein sequence

>MS.gene31183.t1

MHLCFLIWKKFDQRRDQECYILNYQCYKPSDERKLGSEQCGKIIGNNENIGLDECKFFLKAVVNSGIGEETYAPRNFIEGRTVNPTMEDEVEEMEEFCNDSIAKLLNKSGISPSEIDILVVNVSLFSSVPSLTSRIINHYKMREDIKAYNLSGMGCSASLISLDVIQNIFKSQKNKYALLLTSESLSTNWYSGNNRSMILANCLFRTGGCAILLTNKRSLKHKAILKLKCLVRTHHGARDDAHNCCSQKEDEQGKLGFYLAKDLPKAATRAFTDNLRVLSPKILPAREIFRYMLMSLIKKVIKYFAPKSAARWFGTSNKSPVNFKTGVDHFVLHTGGKAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMISLGAGFKCNSCYWEVMRDVVGDDRNVWDDCIDYYPPHSLANPFMEKYGWINNIQDPNTFKLKLAEFLLSLK