AlfalfaGEDB | MS.gene057639

M. sativa cultivar XinJiangDaYe / MS.gene057639

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057639.t1	XP_003606964.1	96	225	9	0	1	225	1	225	8.80E-110	406.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057639.t1	G7JHF1	96.0	225	9	0	1	225	1	225	6.3e-110	406.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050642	MS.gene057639	0.804113	2.52E-49	-1.69E-46
MS.gene050750	MS.gene057639	0.825492	4.55E-54	-1.69E-46
MS.gene050820	MS.gene057639	0.817371	3.41E-52	-1.69E-46
MS.gene050953	MS.gene057639	0.829521	4.91E-55	-1.69E-46
MS.gene051983	MS.gene057639	0.813682	2.26E-51	-1.69E-46
MS.gene053166	MS.gene057639	0.803452	3.46E-49	-1.69E-46
MS.gene053836	MS.gene057639	0.819063	1.41E-52	-1.69E-46
MS.gene054405	MS.gene057639	0.825641	4.20E-54	-1.69E-46
MS.gene054473	MS.gene057639	0.806234	9.08E-50	-1.69E-46
MS.gene054559	MS.gene057639	0.807736	4.37E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057639.t1	MTR_4g070660	96.000	225	9	0	1	225	1	225	7.10e-147	408
MS.gene057639.t1	MTR_4g070640	73.009	226	47	5	1	225	1	213	2.34e-94	275
MS.gene057639.t1	MTR_4g070630	65.000	180	52	3	46	225	1	169	3.80e-72	217
MS.gene057639.t1	MTR_3g117050	37.984	258	101	12	9	221	10	253	1.86e-32	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057639.t1	AT5G66440	30.705	241	141	8	1	220	1	236	1.23e-23	95.5
MS.gene057639.t1	AT4G34560	30.851	188	86	9	52	221	50	211	8.90e-11	60.1

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Find 38 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCATAAGCTTCAAA+GGG	0.531611	4.2:+36471918	MS.gene057639:CDS
AAACTCGAGCGAGTATTTAA+AGG	0.299130	4.2:+36472026	MS.gene057639:CDS
AAAGCAACAAAGAGGATTTG+AGG	0.536464	4.2:+36472518	MS.gene057639:CDS
AAAGGGCAACAACTTTGTTA+CGG	0.468035	4.2:+36471935	MS.gene057639:CDS
AAATATGATAGCACAAAAGA+AGG	0.540013	4.2:+36472225	MS.gene057639:CDS
AACTAAAACAGGGTTGAAGA+AGG	0.504135	4.2:+36472296	MS.gene057639:CDS
AAGCAACAAAGAGGATTTGA+GGG	0.514889	4.2:+36472519	MS.gene057639:CDS
AATGGTGAGAATTTCGTATC+CGG	0.535348	4.2:+36472443	MS.gene057639:CDS
ACTAAAACAGGGTTGAAGAA+GGG	0.598384	4.2:+36472297	MS.gene057639:CDS
AGAAAATGAAAACTAAAACA+GGG	0.723999	4.2:+36472286	MS.gene057639:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGGGTTATTGTTATAGA+AGG	+	chr4.2:36472313-36472332	MS.gene057639:CDS	30.0%
CAAACAACGTGATGATTATA+AGG	-	chr4.2:36472101-36472120	None:intergenic	30.0%
GATATTTATGAAAAGTTGGC+AGG	+	chr4.2:36472165-36472184	MS.gene057639:CDS	30.0%
TTTATTGCAAAGCAACAAAG+AGG	+	chr4.2:36472510-36472529	MS.gene057639:CDS	30.0%
AAACTCGAGCGAGTATTTAA+AGG	+	chr4.2:36472026-36472045	MS.gene057639:CDS	35.0%
AAAGCAACAAAGAGGATTTG+AGG	+	chr4.2:36472518-36472537	MS.gene057639:CDS	35.0%
AAAGGGCAACAACTTTGTTA+CGG	+	chr4.2:36471935-36471954	MS.gene057639:CDS	35.0%
AACTAAAACAGGGTTGAAGA+AGG	+	chr4.2:36472296-36472315	MS.gene057639:CDS	35.0%
AAGCAACAAAGAGGATTTGA+GGG	+	chr4.2:36472519-36472538	MS.gene057639:CDS	35.0%
AATGGTGAGAATTTCGTATC+CGG	+	chr4.2:36472443-36472462	MS.gene057639:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	36471868	36472545	36471868	ID=MS.gene057639
chr4.2	mRNA	36471868	36472545	36471868	ID=MS.gene057639.t1;Parent=MS.gene057639
chr4.2	exon	36471868	36472545	36471868	ID=MS.gene057639.t1.exon1;Parent=MS.gene057639.t1
chr4.2	CDS	36471868	36472545	36471868	ID=cds.MS.gene057639.t1;Parent=MS.gene057639.t1

Gene Sequence

>MS.gene057639

ATGGAGTCGTTCAGCTTTAACCTCCAAGCAGAGAAAGCCAACGCAATCCTAAAACATCATAAGCTTCAAAGGGCAACAACTTTGTTACGGCTCGTTGAAGTGTGTGTTGTTTTGGTCCTGATTTCAAGGCTTTCTATGAGGTTACCAATTGTGGTAAGAAACTCGAGCGAGTATTTAAAGGATATTTCAGTCTTTATCAATAGCCACTGTTTTGTCTTCGTTATCGGAAACCTTATAATCATCACGTTGTTTGCTCAAGGTAATAGAAAAAACATTCCAAAAGAACAGGAACATGATGATATTTATGAAAAGTTGGCAGGCAAAAGTATAAAGCACGAAGAAAAAGAGAGAATAATAAAATATGATAGCACAAAAGAAGGTGCTAGCATAGAGAACAAGAGAATTGATGATGCGGAAGAGAAAATGAAAACTAAAACAGGGTTGAAGAAGGGTTATTGTTATAGAAGGTGTGAAACTGAGATTTTGAAGAAACGGCGTCGTGTGCTGCGAAGATGTGAGAGTGAGAACAGCGGAAGGAAAAAGATTGAAGCTGCTCCTGCTGCTGGTGAGGAGAAAATGGTGAGAATTTCGTATCCGGAGGATGAGATGAGCAACGAGGAGTTTCGTCGTACTGTAGAGGCTTTTATTGCAAAGCAACAAAGAGGATTTGAGGGGTAG

Protein sequence

>MS.gene057639.t1

MESFSFNLQAEKANAILKHHKLQRATTLLRLVEVCVVLVLISRLSMRLPIVVRNSSEYLKDISVFINSHCFVFVIGNLIIITLFAQGNRKNIPKEQEHDDIYEKLAGKSIKHEEKERIIKYDSTKEGASIENKRIDDAEEKMKTKTGLKKGYCYRRCETEILKKRRRVLRRCESENSGRKKIEAAPAAGEEKMVRISYPEDEMSNEEFRRTVEAFIAKQQRGFEG