AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050642


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050642.t1 MTR_7g117270 96.748 369 9 2 1 369 165 530 0.0 717
MS.gene050642.t1 MTR_3g083350 42.735 234 124 3 15 246 160 385 7.54e-55 189
MS.gene050642.t1 MTR_3g105530 33.923 339 181 8 1 322 115 427 2.06e-45 161
MS.gene050642.t1 MTR_1g032040 39.184 245 138 5 11 252 127 363 1.55e-41 150
MS.gene050642.t1 MTR_1g032380 39.184 245 138 5 11 252 127 363 1.55e-41 150
MS.gene050642.t1 MTR_1g072550 39.754 244 136 5 11 251 127 362 1.79e-41 150
MS.gene050642.t1 MTR_1g019170 35.458 251 141 5 1 247 97 330 4.84e-37 138
MS.gene050642.t1 MTR_2g067960 32.641 337 184 11 23 336 114 430 1.20e-36 137
MS.gene050642.t1 MTR_6g033595 32.827 329 178 11 23 328 149 457 1.56e-36 138
MS.gene050642.t1 MTR_3g029990 35.458 251 141 5 1 247 97 330 3.35e-36 139
MS.gene050642.t1 MTR_3g029990 35.458 251 141 5 1 247 97 330 3.40e-36 139
MS.gene050642.t1 MTR_3g074730 37.548 261 144 6 1 253 136 385 1.24e-35 134
MS.gene050642.t1 MTR_3g030020 32.281 285 170 6 1 279 54 321 1.85e-35 133
MS.gene050642.t1 MTR_8g089370 32.576 264 169 3 1 262 120 376 1.15e-34 131
MS.gene050642.t1 MTR_1g098960 34.661 251 143 5 1 247 99 332 5.53e-34 130
MS.gene050642.t1 MTR_7g107280 29.968 317 204 5 1 306 111 420 4.38e-31 122
MS.gene050642.t1 MTR_7g088530 32.422 256 164 3 1 255 125 372 4.75e-31 122
MS.gene050642.t1 MTR_0153s0070 31.579 304 139 7 1 288 92 342 1.72e-29 117
MS.gene050642.t1 MTR_0153s0070 33.772 228 121 5 1 212 122 335 2.83e-29 115
MS.gene050642.t1 MTR_4g053720 30.522 249 147 5 1 235 102 338 2.56e-24 102
MS.gene050642.t1 MTR_3g448960 30.588 255 131 6 1 251 99 311 5.91e-24 102
MS.gene050642.t1 MTR_3g063230 25.478 314 197 7 1 296 131 425 1.50e-21 95.5
MS.gene050642.t1 MTR_3g063230 29.508 183 109 4 123 296 230 401 2.39e-18 86.3
MS.gene050642.t1 MTR_7g018630 27.413 259 166 4 1 251 131 375 3.90e-18 85.5
MS.gene050642.t1 MTR_8g102038 28.718 195 113 5 1 181 56 238 4.00e-14 71.6
MS.gene050642.t1 MTR_6g043850 22.373 295 208 3 23 315 132 407 6.16e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050642.t1 AT4G01037 63.757 378 122 6 1 369 157 528 1.23e-150 436
MS.gene050642.t1 AT5G62990 44.141 256 126 5 1 251 149 392 1.33e-62 208
MS.gene050642.t1 AT3G63090 40.000 245 136 6 11 252 130 366 1.19e-43 156
MS.gene050642.t1 AT5G48040 33.333 306 187 6 1 305 122 411 2.15e-40 147
MS.gene050642.t1 AT5G21970 32.911 316 167 7 1 307 134 413 1.85e-37 140
MS.gene050642.t1 AT5G21970 32.911 316 167 7 1 307 134 413 1.85e-37 140
MS.gene050642.t1 AT1G79120 31.418 261 166 2 1 251 138 395 1.17e-36 137
MS.gene050642.t1 AT1G79120 31.418 261 166 2 1 251 138 395 1.17e-36 137
MS.gene050642.t1 AT2G31290 32.677 254 152 4 1 251 104 341 5.91e-36 135
MS.gene050642.t1 AT2G31290 32.677 254 152 4 1 251 104 341 5.91e-36 135
MS.gene050642.t1 AT4G33495 32.847 274 161 7 14 270 134 401 8.45e-34 129
MS.gene050642.t1 AT4G08940 37.255 255 148 6 1 253 144 388 3.10e-33 128
MS.gene050642.t1 AT3G58520 31.518 257 163 3 15 263 116 367 2.33e-32 125
MS.gene050642.t1 AT3G58520 31.518 257 163 3 15 263 128 379 5.30e-32 125
MS.gene050642.t1 AT1G06440 32.941 255 156 7 21 265 135 384 3.08e-30 119
MS.gene050642.t1 AT5G45790 30.255 314 192 6 1 314 62 348 5.95e-30 118
MS.gene050642.t1 AT5G45790 30.255 314 192 6 1 314 147 433 2.00e-29 118
MS.gene050642.t1 AT1G71850 27.931 290 185 6 26 312 137 405 1.54e-26 110
MS.gene050642.t1 AT4G24320 30.657 274 168 7 1 264 103 364 5.48e-26 108
MS.gene050642.t1 AT2G39120 27.165 254 173 3 1 251 111 355 1.08e-16 81.3

Find 81 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCATTTGGCGAATGATTT+AGG 0.190368 7.3:-1017183 MS.gene050642:CDS
AAAGAGATATAAAACATATC+AGG 0.276380 7.3:+1016691 None:intergenic
TCAAGATTACCACCGTTCTC+TGG 0.326785 7.3:+1016222 None:intergenic
TACTCAGATTTCTCTATGAT+TGG 0.332939 7.3:-1016868 MS.gene050642:CDS
GTTAGAGAAAATTGGGCATT+TGG 0.343668 7.3:-1017196 MS.gene050642:CDS
ACAGGGATTCTGTGTTCCTT+AGG 0.353477 7.3:-1016660 MS.gene050642:CDS
TCTGAGTAAGGCGATATATA+AGG 0.364252 7.3:+1016883 None:intergenic
CGTTCTCTGGGACGACCATC+AGG 0.372597 7.3:+1016235 None:intergenic
AGCAGAATTTAATTATAGAT+AGG 0.391261 7.3:-1016993 MS.gene050642:CDS
AGATAGAGATGGAGATGGGA+TGG 0.396749 7.3:-1016518 MS.gene050642:CDS
ACCTCCTCGTCATCAAAATC+TGG 0.414715 7.3:+1016346 None:intergenic
TTCGCGACACCATTTGTCAT+AGG 0.422027 7.3:-1017146 MS.gene050642:CDS
AAAGTTGTTCAGACTGAAAG+AGG 0.431002 7.3:-1017108 MS.gene050642:CDS
TGCACTTGAATTAACACATT+GGG 0.442420 7.3:-1017082 MS.gene050642:CDS
AGCTTTATCTTGAAGAATTG+AGG 0.442851 7.3:-1017296 MS.gene050642:CDS
GGACAGATTGTTACTTGTAA+AGG 0.447014 7.3:-1016605 MS.gene050642:CDS
TTTGAAAGATTAAGACCCTT+AGG 0.447819 7.3:+1016943 None:intergenic
ATATCTCTTTGAAAGGAGAC+AGG 0.456034 7.3:-1016678 MS.gene050642:CDS
CAGGGATTCTGTGTTCCTTA+GGG 0.456981 7.3:-1016659 MS.gene050642:CDS
CGACCGGCACCCCTACCCTT+AGG 0.457781 7.3:+1016547 None:intergenic
TGATATTCCACGATTTCCTA+AGG 0.460152 7.3:-1016563 MS.gene050642:CDS
ATCTTGAAGAATTGAGGGTT+AGG 0.461053 7.3:-1017290 MS.gene050642:CDS
CTCTGGATACCTATGACAAA+TGG 0.461089 7.3:+1017137 None:intergenic
AAGGGTCTTAATCTTTCAAA+AGG 0.467749 7.3:-1016940 MS.gene050642:CDS
GCTTTATCTTGAAGAATTGA+GGG 0.468992 7.3:-1017295 MS.gene050642:CDS
TCCACGATTTCCTAAGGGTA+GGG 0.472983 7.3:-1016557 MS.gene050642:CDS
GATAGAGATGGAGATGGGAT+GGG 0.477156 7.3:-1016517 MS.gene050642:CDS
AGCTTTACTCTATTAAACTT+AGG 0.478690 7.3:+1016967 None:intergenic
TTTCCTAAGGGTAGGGGTGC+CGG 0.484180 7.3:-1016550 MS.gene050642:CDS
GCAGAATTTAATTATAGATA+GGG 0.485320 7.3:-1016992 MS.gene050642:CDS
CAAGATTACCACCGTTCTCT+GGG 0.485705 7.3:+1016223 None:intergenic
TAATAGAGTAAAGCTTCCTA+AGG 0.486104 7.3:-1016959 MS.gene050642:CDS
ATTGAGGGTTAGGAATGAAA+TGG 0.486805 7.3:-1017280 MS.gene050642:CDS
CGCAAGACAGAATAATGAAA+AGG 0.489822 7.3:-1016275 MS.gene050642:CDS
AATTGAGAGGGATGTTGATA+AGG 0.491946 7.3:-1016717 MS.gene050642:CDS
ATCATAGAGAAATCTGAGTA+AGG 0.496079 7.3:+1016871 None:intergenic
ATCTCTATCTCTAGTGCGAC+CGG 0.501008 7.3:+1016531 None:intergenic
ATGTTGTTGTTACTAAGCTT+AGG 0.506899 7.3:-1017254 MS.gene050642:CDS
CGATTCTCACAGCAATTGAG+AGG 0.531952 7.3:-1016730 MS.gene050642:CDS
CAATGTGTTAATTCAAGTGC+AGG 0.536567 7.3:+1017084 None:intergenic
CTTGTTCCATCATTCCCTGA+TGG 0.538863 7.3:-1016250 MS.gene050642:CDS
GAAATTGTTGATGATGCCGT+TGG 0.539200 7.3:-1017232 MS.gene050642:CDS
GGACGACCATCAGGGAATGA+TGG 0.544132 7.3:+1016244 None:intergenic
AAGAGATATAAAACATATCA+GGG 0.552458 7.3:+1016692 None:intergenic
GAAATTTAGAATGACTTCTG+AGG 0.553098 7.3:-1017325 None:intergenic
TGCGGCCGAGCTGTCTGCGG+AGG 0.560311 7.3:-1017040 MS.gene050642:CDS
CTGATGGTCGTCCCAGAGAA+CGG 0.562404 7.3:-1016234 MS.gene050642:CDS
CCACGATTTCCTAAGGGTAG+GGG 0.563389 7.3:-1016556 MS.gene050642:CDS
AGCTTATCGAGATTCTCAGT+TGG 0.565019 7.3:-1016635 MS.gene050642:CDS
ACTAGAGATAGAGATGGAGA+TGG 0.565748 7.3:-1016523 MS.gene050642:CDS
TTCTGCGGCCGAGCTGTCTG+CGG 0.565854 7.3:-1017043 MS.gene050642:CDS
ACGATGATATCGATGATGAC+TGG 0.572213 7.3:-1016399 MS.gene050642:CDS
GAATGATATTGATAGCAGAC+AGG 0.573642 7.3:-1016491 MS.gene050642:CDS
CTGCACTTGAATTAACACAT+TGG 0.577423 7.3:-1017083 MS.gene050642:CDS
GGAGAATCGAATTAGAGAAG+TGG 0.581481 7.3:-1017019 MS.gene050642:CDS
ACAGGATGAAAGTGGTGAAG+AGG 0.582031 7.3:-1016473 MS.gene050642:CDS
ATCTTTCAAAAGGTGAGATG+AGG 0.582454 7.3:-1016930 MS.gene050642:CDS
TCCTCAGCTTGCAGTTTCTG+CGG 0.583709 7.3:-1017058 MS.gene050642:CDS
GGTCGCACTAGAGATAGAGA+TGG 0.588250 7.3:-1016529 MS.gene050642:CDS
CTAGAGATAGAGATGGAGAT+GGG 0.591787 7.3:-1016522 MS.gene050642:CDS
GATAGCAGACAGGATGAAAG+TGG 0.596310 7.3:-1016481 MS.gene050642:CDS
CCCCTACCCTTAGGAAATCG+TGG 0.600344 7.3:+1016556 None:intergenic
GCCGCAGAAACTGCAAGCTG+AGG 0.600466 7.3:+1017057 None:intergenic
GATTCTCACAGCAATTGAGA+GGG 0.608241 7.3:-1016729 MS.gene050642:CDS
TATCTCTTTGAAAGGAGACA+GGG 0.611518 7.3:-1016677 MS.gene050642:CDS
AATAGAGTAAAGCTTCCTAA+GGG 0.615219 7.3:-1016958 MS.gene050642:CDS
ATTCTCCTCCGCAGACAGCT+CGG 0.615702 7.3:+1017035 None:intergenic
AATCTCGATAAGCTTCCCTA+AGG 0.627558 7.3:+1016644 None:intergenic
GATATTCCACGATTTCCTAA+GGG 0.627966 7.3:-1016562 MS.gene050642:CDS
TCCTCGTCATCAAAATCTGG+TGG 0.632166 7.3:+1016349 None:intergenic
GTGGTGAAGAGGAACAAGAA+TGG 0.632592 7.3:-1016462 MS.gene050642:CDS
CATCAGGGAATGATGGAACA+AGG 0.636284 7.3:+1016251 None:intergenic
AGATTCTCAGTTGGTAGACA+AGG 0.639646 7.3:-1016626 MS.gene050642:CDS
TGATGATGCCGTTGGAAAAG+CGG 0.641358 7.3:-1017224 MS.gene050642:CDS
GTTCTCTGGGACGACCATCA+GGG 0.643365 7.3:+1016236 None:intergenic
TATGATTGGTTTGAACACGC+CGG 0.658259 7.3:-1016854 MS.gene050642:CDS
TGACGAGGAGGTAGAAACAT+CGG 0.661367 7.3:-1016335 MS.gene050642:CDS
GCTGATGATTTAATCAGCGA+TGG 0.662081 7.3:-1016433 MS.gene050642:CDS
TTCCACGATTTCCTAAGGGT+AGG 0.664321 7.3:-1016558 MS.gene050642:CDS
ATGGTGTCGCGAAATTCTCG+AGG 0.669888 7.3:+1017156 None:intergenic
ATGGTCGTCCCAGAGAACGG+TGG 0.738040 7.3:-1016231 MS.gene050642:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAGATATAAAACATATC+AGG + chr7.3:1016855-1016874 None:intergenic 20.0%
!! AAGAGATATAAAACATATCA+GGG + chr7.3:1016854-1016873 None:intergenic 20.0%
!! AGCAGAATTTAATTATAGAT+AGG - chr7.3:1016550-1016569 MS.gene050642:CDS 20.0%
!! GCAGAATTTAATTATAGATA+GGG - chr7.3:1016551-1016570 MS.gene050642:CDS 20.0%
!!! ATGTTTTATATCTCTTTGAA+AGG - chr7.3:1016858-1016877 MS.gene050642:CDS 20.0%
! AGCTTTACTCTATTAAACTT+AGG + chr7.3:1016579-1016598 None:intergenic 25.0%
!! GGATTTTGTTAGAGAAAATT+GGG - chr7.3:1016340-1016359 MS.gene050642:CDS 25.0%
!! TGAACAACTTTAAAAAACTC+TGG + chr7.3:1016426-1016445 None:intergenic 25.0%
AAGGGTCTTAATCTTTCAAA+AGG - chr7.3:1016603-1016622 MS.gene050642:CDS 30.0%
AATAGAGTAAAGCTTCCTAA+GGG - chr7.3:1016585-1016604 MS.gene050642:CDS 30.0%
ATCATAGAGAAATCTGAGTA+AGG + chr7.3:1016675-1016694 None:intergenic 30.0%
GCTTTATCTTGAAGAATTGA+GGG - chr7.3:1016248-1016267 MS.gene050642:CDS 30.0%
TAATAGAGTAAAGCTTCCTA+AGG - chr7.3:1016584-1016603 MS.gene050642:CDS 30.0%
TACTCAGATTTCTCTATGAT+TGG - chr7.3:1016675-1016694 MS.gene050642:CDS 30.0%
TGCACTTGAATTAACACATT+GGG - chr7.3:1016461-1016480 MS.gene050642:CDS 30.0%
TTTGAAAGATTAAGACCCTT+AGG + chr7.3:1016603-1016622 None:intergenic 30.0%
! AGCTTTATCTTGAAGAATTG+AGG - chr7.3:1016247-1016266 MS.gene050642:CDS 30.0%
! ATGTTGTTGTTACTAAGCTT+AGG - chr7.3:1016289-1016308 MS.gene050642:CDS 30.0%
! CGGATTTTGTTAGAGAAAAT+TGG - chr7.3:1016339-1016358 MS.gene050642:CDS 30.0%
AAAGGAAAAACTTCGTTCGT+TGG - chr7.3:1016956-1016975 MS.gene050642:CDS 35.0%
AAAGTTGTTCAGACTGAAAG+AGG - chr7.3:1016435-1016454 MS.gene050642:CDS 35.0%
AATTGAGAGGGATGTTGATA+AGG - chr7.3:1016826-1016845 MS.gene050642:CDS 35.0%
ATCTTGAAGAATTGAGGGTT+AGG - chr7.3:1016253-1016272 MS.gene050642:CDS 35.0%
ATCTTTCAAAAGGTGAGATG+AGG - chr7.3:1016613-1016632 MS.gene050642:CDS 35.0%
ATTGAGGGTTAGGAATGAAA+TGG - chr7.3:1016263-1016282 MS.gene050642:CDS 35.0%
CAATGTGTTAATTCAAGTGC+AGG + chr7.3:1016462-1016481 None:intergenic 35.0%
CGCAAGACAGAATAATGAAA+AGG - chr7.3:1017268-1017287 MS.gene050642:CDS 35.0%
CTGCACTTGAATTAACACAT+TGG - chr7.3:1016460-1016479 MS.gene050642:CDS 35.0%
GATATTCCACGATTTCCTAA+GGG - chr7.3:1016981-1017000 MS.gene050642:CDS 35.0%
GTTAGAGAAAATTGGGCATT+TGG - chr7.3:1016347-1016366 MS.gene050642:CDS 35.0%
TCTGAGTAAGGCGATATATA+AGG + chr7.3:1016663-1016682 None:intergenic 35.0%
TGATATTCCACGATTTCCTA+AGG - chr7.3:1016980-1016999 MS.gene050642:CDS 35.0%
! ATATCTCTTTGAAAGGAGAC+AGG - chr7.3:1016865-1016884 MS.gene050642:CDS 35.0%
! GAATGATATTGATAGCAGAC+AGG - chr7.3:1017052-1017071 MS.gene050642:CDS 35.0%
! GGACAGATTGTTACTTGTAA+AGG - chr7.3:1016938-1016957 MS.gene050642:CDS 35.0%
! TATCTCTTTGAAAGGAGACA+GGG - chr7.3:1016866-1016885 MS.gene050642:CDS 35.0%
!! AACAAAATCCGCTTTTCCAA+CGG + chr7.3:1016330-1016349 None:intergenic 35.0%
!! TAACTTCACTCATTTTCGAG+AGG - chr7.3:1016785-1016804 MS.gene050642:CDS 35.0%
AATCTCGATAAGCTTCCCTA+AGG + chr7.3:1016902-1016921 None:intergenic 40.0%
ACGATGATATCGATGATGAC+TGG - chr7.3:1017144-1017163 MS.gene050642:CDS 40.0%
ACTAGAGATAGAGATGGAGA+TGG - chr7.3:1017020-1017039 MS.gene050642:CDS 40.0%
AGCTTATCGAGATTCTCAGT+TGG - chr7.3:1016908-1016927 MS.gene050642:CDS 40.0%
CTAGAGATAGAGATGGAGAT+GGG - chr7.3:1017021-1017040 MS.gene050642:CDS 40.0%
CTCTGGATACCTATGACAAA+TGG + chr7.3:1016409-1016428 None:intergenic 40.0%
GATTCTCACAGCAATTGAGA+GGG - chr7.3:1016814-1016833 MS.gene050642:CDS 40.0%
GCTGATGATTTAATCAGCGA+TGG - chr7.3:1017110-1017129 MS.gene050642:CDS 40.0%
GGAGAATCGAATTAGAGAAG+TGG - chr7.3:1016524-1016543 MS.gene050642:CDS 40.0%
! CAAGCATGCTTCTCTTTTTC+CGG + chr7.3:1016711-1016730 None:intergenic 40.0%
! GAAAAAGAGAAGCATGCTTG+TGG - chr7.3:1016711-1016730 MS.gene050642:CDS 40.0%
!! AGATTCTCAGTTGGTAGACA+AGG - chr7.3:1016917-1016936 MS.gene050642:CDS 40.0%
!! GAAATTGTTGATGATGCCGT+TGG - chr7.3:1016311-1016330 MS.gene050642:CDS 40.0%
!! TATGATTGGTTTGAACACGC+CGG - chr7.3:1016689-1016708 MS.gene050642:CDS 40.0%
ACAGGATGAAAGTGGTGAAG+AGG - chr7.3:1017070-1017089 MS.gene050642:CDS 45.0%
ACAGGGATTCTGTGTTCCTT+AGG - chr7.3:1016883-1016902 MS.gene050642:CDS 45.0%
ACCTCCTCGTCATCAAAATC+TGG + chr7.3:1017200-1017219 None:intergenic 45.0%
AGATAGAGATGGAGATGGGA+TGG - chr7.3:1017025-1017044 MS.gene050642:CDS 45.0%
ATCTCTATCTCTAGTGCGAC+CGG + chr7.3:1017015-1017034 None:intergenic 45.0%
CAGGGATTCTGTGTTCCTTA+GGG - chr7.3:1016884-1016903 MS.gene050642:CDS 45.0%
CGATTCTCACAGCAATTGAG+AGG - chr7.3:1016813-1016832 MS.gene050642:CDS 45.0%
CTTGTTCCATCATTCCCTGA+TGG - chr7.3:1017293-1017312 MS.gene050642:CDS 45.0%
GATAGAGATGGAGATGGGAT+GGG - chr7.3:1017026-1017045 MS.gene050642:CDS 45.0%
GATAGCAGACAGGATGAAAG+TGG - chr7.3:1017062-1017081 MS.gene050642:CDS 45.0%
GGGCATTTGGCGAATGATTT+AGG - chr7.3:1016360-1016379 MS.gene050642:CDS 45.0%
GTGGTGAAGAGGAACAAGAA+TGG - chr7.3:1017081-1017100 MS.gene050642:CDS 45.0%
TCCACGATTTCCTAAGGGTA+GGG - chr7.3:1016986-1017005 MS.gene050642:CDS 45.0%
TCCTCGTCATCAAAATCTGG+TGG + chr7.3:1017197-1017216 None:intergenic 45.0%
TGACGAGGAGGTAGAAACAT+CGG - chr7.3:1017208-1017227 MS.gene050642:CDS 45.0%
TTCCACGATTTCCTAAGGGT+AGG - chr7.3:1016985-1017004 MS.gene050642:CDS 45.0%
TTCGCGACACCATTTGTCAT+AGG - chr7.3:1016397-1016416 MS.gene050642:CDS 45.0%
! CATCAGGGAATGATGGAACA+AGG + chr7.3:1017295-1017314 None:intergenic 45.0%
! TGATGATGCCGTTGGAAAAG+CGG - chr7.3:1016319-1016338 MS.gene050642:CDS 45.0%
!!! ACCACCAGATTTTGATGACG+AGG - chr7.3:1017193-1017212 MS.gene050642:CDS 45.0%
!!! ACCAGATTTTGATGACGAGG+AGG - chr7.3:1017196-1017215 MS.gene050642:CDS 45.0%
CCACGATTTCCTAAGGGTAG+GGG - chr7.3:1016987-1017006 MS.gene050642:CDS 50.0%
GGTCGCACTAGAGATAGAGA+TGG - chr7.3:1017014-1017033 MS.gene050642:CDS 50.0%
TCCTCAGCTTGCAGTTTCTG+CGG - chr7.3:1016485-1016504 MS.gene050642:CDS 50.0%
!! ATGGTGTCGCGAAATTCTCG+AGG + chr7.3:1016390-1016409 None:intergenic 50.0%
ATTCTCCTCCGCAGACAGCT+CGG + chr7.3:1016511-1016530 None:intergenic 55.0%
CCCCTACCCTTAGGAAATCG+TGG + chr7.3:1016990-1017009 None:intergenic 55.0%
CTGATGGTCGTCCCAGAGAA+CGG - chr7.3:1017309-1017328 MS.gene050642:CDS 55.0%
GGACGACCATCAGGGAATGA+TGG + chr7.3:1017302-1017321 None:intergenic 55.0%
! TTTCCTAAGGGTAGGGGTGC+CGG - chr7.3:1016993-1017012 MS.gene050642:CDS 55.0%
!! GTTCTCTGGGACGACCATCA+GGG + chr7.3:1017310-1017329 None:intergenic 55.0%
ATGGTCGTCCCAGAGAACGG+TGG - chr7.3:1017312-1017331 MS.gene050642:CDS 60.0%
GCCGCAGAAACTGCAAGCTG+AGG + chr7.3:1016489-1016508 None:intergenic 60.0%
!! CGTTCTCTGGGACGACCATC+AGG + chr7.3:1017311-1017330 None:intergenic 60.0%
TTCTGCGGCCGAGCTGTCTG+CGG - chr7.3:1016500-1016519 MS.gene050642:CDS 65.0%
CGACCGGCACCCCTACCCTT+AGG + chr7.3:1016999-1017018 None:intergenic 70.0%
TGCGGCCGAGCTGTCTGCGG+AGG - chr7.3:1016503-1016522 MS.gene050642:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 1016228 1017337 1016228 ID=MS.gene050642
chr7.3 mRNA 1016228 1017337 1016228 ID=MS.gene050642.t1;Parent=MS.gene050642
chr7.3 exon 1016228 1017337 1016228 ID=MS.gene050642.t1.exon1;Parent=MS.gene050642.t1
chr7.3 CDS 1016228 1017337 1016228 ID=cds.MS.gene050642.t1;Parent=MS.gene050642.t1
Gene Sequence

>MS.gene050642

ATGACTTCTGAGGCTGAAAAGCTTTATCTTGAAGAATTGAGGGTTAGGAATGAAATGGAAGATGTTGTTGTTACTAAGCTTAGGAAATTGTTGATGATGCCGTTGGAAAAGCGGATTTTGTTAGAGAAAATTGGGCATTTGGCGAATGATTTAGGACTTCCTCGAGAATTTCGCGACACCATTTGTCATAGGTATCCAGAGTTTTTTAAAGTTGTTCAGACTGAAAGAGGTCCTGCACTTGAATTAACACATTGGGATCCTCAGCTTGCAGTTTCTGCGGCCGAGCTGTCTGCGGAGGAGAATCGAATTAGAGAAGTGGAAGAGCAGAATTTAATTATAGATAGGGCTCCTAAGTTTAATAGAGTAAAGCTTCCTAAGGGTCTTAATCTTTCAAAAGGTGAGATGAGGAAGATAATGCAGTTTAGAGACATTCCTTATATATCGCCTTACTCAGATTTCTCTATGATTGGTTTGAACACGCCGGAAAAAGAGAAGCATGCTTGTGGAGTTATTCATGAGATTTTGAGTCTTACACTTGAGAAGCGAACTCTTGTTGATAACTTCACTCATTTTCGAGAGGAGTTTCGATTCTCACAGCAATTGAGAGGGATGTTGATAAGGCACCCTGATATGTTTTATATCTCTTTGAAAGGAGACAGGGATTCTGTGTTCCTTAGGGAAGCTTATCGAGATTCTCAGTTGGTAGACAAGGACAGATTGTTACTTGTAAAGGAAAAACTTCGTTCGTTGGTTGATATTCCACGATTTCCTAAGGGTAGGGGTGCCGGTCGCACTAGAGATAGAGATGGAGATGGGATGGGAGAGAATGATATTGATAGCAGACAGGATGAAAGTGGTGAAGAGGAACAAGAATGGTCAGATGCTGATGATTTAATCAGCGATGGTGATGATGATGACGATGATATCGATGATGACTGGATTGATGATGATGATGATGATGATACACCACCAGATTTTGATGACGAGGAGGTAGAAACATCGGAAATTGAAAAGAGAAAGACAATTACACGAGTTCAAGACGCAAGACAGAATAATGAAAAGGTCCTTGTTCCATCATTCCCTGATGGTCGTCCCAGAGAACGGTGGTAA

Protein sequence

>MS.gene050642.t1

MTSEAEKLYLEELRVRNEMEDVVVTKLRKLLMMPLEKRILLEKIGHLANDLGLPREFRDTICHRYPEFFKVVQTERGPALELTHWDPQLAVSAAELSAEENRIREVEEQNLIIDRAPKFNRVKLPKGLNLSKGEMRKIMQFRDIPYISPYSDFSMIGLNTPEKEKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDMFYISLKGDRDSVFLREAYRDSQLVDKDRLLLVKEKLRSLVDIPRFPKGRGAGRTRDRDGDGMGENDIDSRQDESGEEEQEWSDADDLISDGDDDDDDIDDDWIDDDDDDDTPPDFDDEEVETSEIEKRKTITRVQDARQNNEKVLVPSFPDGRPRERW