Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31277.t1 | XP_003597262.2 | 94.3 | 350 | 16 | 1 | 1 | 350 | 4 | 349 | 1.10E-170 | 609.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31277.t1 | F4IHS9 | 73.0 | 348 | 83 | 3 | 1 | 348 | 4 | 340 | 1.6e-127 | 457.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31277.t1 | G7IRU7 | 94.3 | 350 | 16 | 1 | 1 | 350 | 4 | 349 | 7.7e-171 | 609.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene31277 | MS.gene55353 | PPI |
MS.gene78610 | MS.gene31277 | PPI |
MS.gene31277 | MS.gene53154 | PPI |
MS.gene31277 | MS.gene85927 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31277.t1 | MTR_2g094640 | 94.286 | 350 | 16 | 1 | 1 | 350 | 4 | 349 | 0.0 | 654 |
MS.gene31277.t1 | MTR_4g058860 | 81.662 | 349 | 58 | 3 | 1 | 348 | 4 | 347 | 0.0 | 560 |
MS.gene31277.t1 | MTR_3g094260 | 61.671 | 347 | 126 | 3 | 3 | 347 | 6 | 347 | 1.17e-140 | 403 |
MS.gene31277.t1 | MTR_3g094270 | 62.538 | 331 | 116 | 3 | 3 | 333 | 6 | 328 | 1.18e-133 | 385 |
MS.gene31277.t1 | MTR_1291s0010 | 92.784 | 97 | 7 | 0 | 1 | 97 | 4 | 100 | 3.20e-56 | 179 |
MS.gene31277.t1 | MTR_3g095130 | 36.593 | 317 | 195 | 3 | 10 | 325 | 16 | 327 | 1.09e-54 | 182 |
MS.gene31277.t1 | MTR_8g092190 | 35.928 | 334 | 202 | 7 | 9 | 337 | 15 | 341 | 1.48e-52 | 177 |
MS.gene31277.t1 | MTR_1g098240 | 38.246 | 285 | 171 | 2 | 11 | 294 | 17 | 297 | 3.57e-50 | 170 |
MS.gene31277.t1 | MTR_1g026590 | 37.024 | 289 | 176 | 2 | 10 | 296 | 14 | 298 | 5.26e-49 | 168 |
MS.gene31277.t1 | MTR_5g004620 | 36.482 | 307 | 188 | 3 | 3 | 306 | 9 | 311 | 1.38e-46 | 162 |
MS.gene31277.t1 | MTR_3g095130 | 35.106 | 282 | 177 | 3 | 45 | 325 | 2 | 278 | 1.70e-43 | 152 |
MS.gene31277.t1 | MTR_2g038410 | 28.713 | 303 | 204 | 3 | 7 | 305 | 54 | 348 | 1.34e-28 | 114 |
MS.gene31277.t1 | MTR_5g096310 | 27.635 | 351 | 222 | 6 | 7 | 350 | 55 | 380 | 6.25e-27 | 110 |
MS.gene31277.t1 | MTR_1g030320 | 26.481 | 287 | 198 | 5 | 17 | 296 | 23 | 303 | 5.88e-19 | 87.0 |
MS.gene31277.t1 | MTR_3g072380 | 24.490 | 343 | 236 | 6 | 4 | 334 | 8 | 339 | 1.94e-18 | 85.5 |
MS.gene31277.t1 | MTR_7g110380 | 25.948 | 343 | 220 | 12 | 12 | 340 | 19 | 341 | 7.95e-18 | 84.0 |
MS.gene31277.t1 | MTR_0011s0320 | 26.393 | 341 | 212 | 16 | 19 | 340 | 25 | 345 | 2.04e-16 | 79.7 |
MS.gene31277.t1 | MTR_4g114360 | 24.355 | 349 | 219 | 13 | 19 | 350 | 25 | 345 | 4.41e-15 | 75.9 |
MS.gene31277.t1 | MTR_3g107470 | 24.551 | 334 | 225 | 12 | 19 | 340 | 29 | 347 | 6.61e-15 | 75.1 |
MS.gene31277.t1 | MTR_4g123900 | 28.070 | 342 | 215 | 14 | 12 | 335 | 15 | 343 | 6.58e-13 | 69.7 |
MS.gene31277.t1 | MTR_3g070000 | 24.051 | 316 | 210 | 8 | 4 | 306 | 24 | 322 | 3.00e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31277.t1 | AT2G28315 | 73.352 | 349 | 80 | 4 | 1 | 348 | 4 | 340 | 1.55e-175 | 491 |
MS.gene31277.t1 | AT2G28315 | 77.097 | 310 | 67 | 1 | 1 | 310 | 4 | 309 | 1.35e-167 | 469 |
MS.gene31277.t1 | AT1G06890 | 65.455 | 330 | 105 | 3 | 3 | 330 | 6 | 328 | 1.80e-141 | 405 |
MS.gene31277.t1 | AT1G06890 | 65.455 | 330 | 105 | 3 | 3 | 330 | 6 | 328 | 2.08e-141 | 405 |
MS.gene31277.t1 | AT1G06890 | 65.455 | 330 | 105 | 3 | 3 | 330 | 6 | 328 | 2.14e-141 | 405 |
MS.gene31277.t1 | AT1G06890 | 65.455 | 330 | 105 | 3 | 3 | 330 | 6 | 328 | 2.14e-141 | 405 |
MS.gene31277.t1 | AT2G30460 | 62.216 | 352 | 119 | 4 | 3 | 347 | 6 | 350 | 2.26e-138 | 397 |
MS.gene31277.t1 | AT2G30460 | 62.216 | 352 | 119 | 4 | 3 | 347 | 6 | 350 | 2.26e-138 | 397 |
MS.gene31277.t1 | AT2G30460 | 57.988 | 338 | 124 | 6 | 18 | 347 | 2 | 329 | 2.55e-126 | 365 |
MS.gene31277.t1 | AT2G30460 | 57.988 | 338 | 124 | 6 | 18 | 347 | 2 | 329 | 2.55e-126 | 365 |
MS.gene31277.t1 | AT2G30460 | 57.988 | 338 | 124 | 6 | 18 | 347 | 2 | 329 | 2.55e-126 | 365 |
MS.gene31277.t1 | AT2G30460 | 66.667 | 222 | 70 | 1 | 3 | 224 | 6 | 223 | 1.66e-87 | 267 |
MS.gene31277.t1 | AT4G09810 | 36.061 | 330 | 198 | 3 | 10 | 338 | 16 | 333 | 4.75e-58 | 191 |
MS.gene31277.t1 | AT5G42420 | 38.276 | 290 | 173 | 2 | 9 | 296 | 16 | 301 | 1.52e-55 | 185 |
MS.gene31277.t1 | AT1G34020 | 35.077 | 325 | 198 | 3 | 15 | 338 | 21 | 333 | 1.89e-54 | 182 |
MS.gene31277.t1 | AT1G34020 | 35.077 | 325 | 198 | 3 | 15 | 338 | 21 | 333 | 1.89e-54 | 182 |
MS.gene31277.t1 | AT1G34020 | 35.077 | 325 | 198 | 3 | 15 | 338 | 21 | 333 | 1.89e-54 | 182 |
MS.gene31277.t1 | AT4G39390 | 35.443 | 316 | 199 | 2 | 9 | 323 | 16 | 327 | 1.49e-53 | 179 |
MS.gene31277.t1 | AT4G39390 | 35.443 | 316 | 199 | 2 | 9 | 323 | 20 | 331 | 1.52e-53 | 179 |
MS.gene31277.t1 | AT4G39390 | 35.443 | 316 | 199 | 2 | 9 | 323 | 20 | 331 | 1.52e-53 | 179 |
MS.gene31277.t1 | AT1G21070 | 33.934 | 333 | 210 | 4 | 9 | 337 | 16 | 342 | 1.57e-53 | 180 |
MS.gene31277.t1 | AT1G76670 | 36.913 | 298 | 182 | 2 | 9 | 304 | 15 | 308 | 1.10e-51 | 175 |
MS.gene31277.t1 | AT1G76670 | 36.913 | 298 | 182 | 2 | 9 | 304 | 15 | 308 | 1.10e-51 | 175 |
MS.gene31277.t1 | AT4G09810 | 36.822 | 258 | 150 | 3 | 82 | 338 | 31 | 276 | 1.15e-46 | 160 |
MS.gene31277.t1 | AT4G09810 | 37.264 | 212 | 129 | 1 | 10 | 221 | 16 | 223 | 1.08e-35 | 130 |
MS.gene31277.t1 | AT5G55950 | 27.517 | 298 | 204 | 3 | 7 | 300 | 56 | 345 | 1.95e-29 | 117 |
MS.gene31277.t1 | AT5G55950 | 27.852 | 298 | 198 | 4 | 19 | 307 | 8 | 297 | 2.60e-29 | 115 |
MS.gene31277.t1 | AT5G57100 | 27.632 | 304 | 204 | 4 | 7 | 306 | 63 | 354 | 1.01e-26 | 109 |
MS.gene31277.t1 | AT5G42420 | 42.857 | 126 | 72 | 0 | 171 | 296 | 109 | 234 | 1.03e-26 | 107 |
MS.gene31277.t1 | AT5G55950 | 27.526 | 287 | 191 | 4 | 30 | 307 | 1 | 279 | 2.41e-26 | 107 |
MS.gene31277.t1 | AT5G57100 | 29.412 | 204 | 136 | 2 | 103 | 306 | 44 | 239 | 2.38e-20 | 89.7 |
MS.gene31277.t1 | AT5G55950 | 26.230 | 244 | 168 | 3 | 7 | 246 | 56 | 291 | 5.42e-19 | 86.7 |
MS.gene31277.t1 | AT1G21870 | 26.460 | 291 | 189 | 6 | 19 | 296 | 26 | 304 | 3.41e-17 | 82.0 |
MS.gene31277.t1 | AT1G77610 | 25.442 | 283 | 202 | 3 | 19 | 296 | 20 | 298 | 6.11e-17 | 81.3 |
MS.gene31277.t1 | AT5G57100 | 25.820 | 244 | 169 | 3 | 7 | 246 | 63 | 298 | 1.47e-16 | 79.7 |
MS.gene31277.t1 | AT2G25520 | 24.561 | 342 | 213 | 12 | 19 | 343 | 29 | 342 | 7.01e-16 | 78.2 |
MS.gene31277.t1 | AT5G25400 | 25.148 | 338 | 217 | 14 | 19 | 343 | 29 | 343 | 1.30e-15 | 77.4 |
MS.gene31277.t1 | AT4G32390 | 23.978 | 367 | 237 | 13 | 2 | 347 | 5 | 350 | 8.65e-15 | 75.1 |
MS.gene31277.t1 | AT5G11230 | 23.810 | 336 | 228 | 10 | 19 | 341 | 29 | 349 | 1.44e-14 | 74.3 |
MS.gene31277.t1 | AT5G57100 | 27.624 | 181 | 123 | 2 | 7 | 183 | 63 | 239 | 8.95e-13 | 68.2 |
MS.gene31277.t1 | AT4G32272 | 22.789 | 294 | 214 | 3 | 16 | 297 | 47 | 339 | 1.90e-12 | 67.8 |
MS.gene31277.t1 | AT3G17430 | 26.331 | 338 | 217 | 14 | 19 | 342 | 23 | 342 | 2.40e-12 | 67.8 |
MS.gene31277.t1 | AT3G17430 | 26.331 | 338 | 217 | 14 | 19 | 342 | 23 | 342 | 2.40e-12 | 67.8 |
MS.gene31277.t1 | AT4G32272 | 22.896 | 297 | 216 | 3 | 13 | 297 | 59 | 354 | 4.40e-12 | 67.0 |
MS.gene31277.t1 | AT5G05820 | 23.885 | 314 | 213 | 9 | 4 | 306 | 10 | 308 | 9.82e-12 | 65.5 |
MS.gene31277.t1 | AT3G11320 | 24.214 | 318 | 207 | 9 | 4 | 306 | 10 | 308 | 3.47e-11 | 63.9 |
Find 58 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAATGGAAGGAACATTAT+TGG | 0.207835 | 2.4:+7738743 | MS.gene31277:CDS |
CTCAAAACATGCCTTGTTCT+AGG | 0.247020 | 2.4:+7738692 | MS.gene31277:CDS |
GAATTGTTTCTTTAGGAAAA+TGG | 0.248886 | 2.4:-7737196 | None:intergenic |
TTTACCTGAATTGTTTCTTT+AGG | 0.256246 | 2.4:-7737203 | None:intergenic |
CAAAGATAGCTCACCCCTTT+TGG | 0.262621 | 2.4:+7739743 | MS.gene31277:CDS |
AAGTTCCAATTGGGTGTTAT+TGG | 0.279379 | 2.4:+7731249 | MS.gene31277:CDS |
GTACTCTTATTTCTGCTTAG+AGG | 0.290544 | 2.4:+7738796 | MS.gene31277:CDS |
TCTCTATTCCTATTACTTGT+TGG | 0.291077 | 2.4:+7737338 | MS.gene31277:CDS |
ACATGCCTTGTTCTAGGCTT+TGG | 0.324787 | 2.4:+7738698 | MS.gene31277:CDS |
CCTAGTACTTGATAAGTTAC+AGG | 0.330021 | 2.4:-7738665 | None:intergenic |
CACCAACTCCAACAAGTAAT+AGG | 0.371985 | 2.4:-7737346 | None:intergenic |
CTTGAGTCTTGGATTTGATA+AGG | 0.375412 | 2.4:+7731636 | MS.gene31277:CDS |
TTCCTATTACTTGTTGGAGT+TGG | 0.375692 | 2.4:+7737344 | MS.gene31277:CDS |
CAATGGATTTGGTCACGAAC+AGG | 0.389886 | 2.4:-7731555 | None:intergenic |
AGCAAGCTTGGCTTCCCCTT+TGG | 0.391651 | 2.4:+7731333 | MS.gene31277:CDS |
AACAAAAGGAAACAATTATT+AGG | 0.404073 | 2.4:+7738821 | MS.gene31277:CDS |
TGATCTGCCACTGGCCTCTC+AGG | 0.407954 | 2.4:+7738844 | MS.gene31277:CDS |
GTGAGCAATTGATCCACAAC+AGG | 0.435326 | 2.4:-7737659 | None:intergenic |
AATAATGTTCCTTCCATTGA+AGG | 0.441447 | 2.4:-7738741 | None:intergenic |
CAGATATTCTTCTACAGTCT+TGG | 0.447683 | 2.4:+7737703 | MS.gene31277:CDS |
GGATTTCTCAACTTGAGTCT+TGG | 0.451090 | 2.4:+7731625 | MS.gene31277:CDS |
AGAGATGGGGAAGTTCCAAT+TGG | 0.458667 | 2.4:+7731239 | None:intergenic |
TTTAGTTTCTGGCCCTGTTG+TGG | 0.461582 | 2.4:+7737646 | MS.gene31277:CDS |
ATGCACCAATAACACCCAAT+TGG | 0.465218 | 2.4:-7731254 | None:intergenic |
GCTTACAAGTTGGCATTTGA+CGG | 0.468684 | 2.4:+7731495 | MS.gene31277:CDS |
AAAGCCTTGATGAGCAAGCT+TGG | 0.474472 | 2.4:+7731321 | MS.gene31277:CDS |
TTGCTCCATGACCCCTTCAA+TGG | 0.476747 | 2.4:+7738728 | MS.gene31277:CDS |
ATCTGTAGGCAAACACACTT+TGG | 0.478717 | 2.4:-7737685 | None:intergenic |
GATTGCTAGAAGGGAAAGAA+TGG | 0.480464 | 2.4:-7737408 | None:intergenic |
AAAAGAATTGCTGCTTGGAA+TGG | 0.500961 | 2.4:-7737626 | None:intergenic |
TCTGCTTAGAGGAGAACAAA+AGG | 0.501726 | 2.4:+7738807 | MS.gene31277:CDS |
GTTTCTAACATCACTGTGAA+TGG | 0.512260 | 2.4:-7737174 | None:intergenic |
TATTGGTGCATTGTTTCTCT+CGG | 0.512428 | 2.4:+7731266 | MS.gene31277:CDS |
TCCTTCCATTGAAGGGGTCA+TGG | 0.512676 | 2.4:-7738733 | None:intergenic |
AAACTAAAAGAATTGCTGCT+TGG | 0.522046 | 2.4:-7737631 | None:intergenic |
CCTGTAACTTATCAAGTACT+AGG | 0.524031 | 2.4:+7738665 | MS.gene31277:CDS |
CAGCTACAACGCTTACAAGT+TGG | 0.531654 | 2.4:+7731485 | MS.gene31277:intron |
AAACAGCAATCAAGCAGGAT+AGG | 0.551085 | 2.4:-7738601 | None:intergenic |
GAGTTGAAGATCAGTGATAG+AGG | 0.551650 | 2.4:-7737372 | None:intergenic |
ATAATGTTCCTTCCATTGAA+GGG | 0.551928 | 2.4:-7738740 | None:intergenic |
GAGATGGGGAAGTTCCAATT+GGG | 0.554142 | 2.4:+7731240 | None:intergenic |
CACAGAAACAGCAATCAAGC+AGG | 0.555984 | 2.4:-7738606 | None:intergenic |
GGCTTTGTTGCAGATGACAA+TGG | 0.574174 | 2.4:-7731304 | None:intergenic |
ACTCAAGTTGAGAAATCCAA+TGG | 0.576144 | 2.4:-7731620 | None:intergenic |
ATTATTAGGTGATCTGCCAC+TGG | 0.583831 | 2.4:+7738835 | MS.gene31277:CDS |
GTAGGCAAACACACTTTGGT+TGG | 0.586244 | 2.4:-7737681 | None:intergenic |
GAAGCCAAGCTTGCTCATCA+AGG | 0.587891 | 2.4:-7731325 | None:intergenic |
TCCATGACCCCTTCAATGGA+AGG | 0.594655 | 2.4:+7738732 | MS.gene31277:CDS |
AAACATGGATAATCAAGAAG+AGG | 0.596972 | 2.4:+7739773 | MS.gene31277:CDS |
TAATGTTCCTTCCATTGAAG+GGG | 0.602234 | 2.4:-7738739 | None:intergenic |
TGTAGCCAAAGCCTAGAACA+AGG | 0.645720 | 2.4:-7738703 | None:intergenic |
CTGCTTGGAATGGAGCAGAA+TGG | 0.651263 | 2.4:-7737616 | None:intergenic |
TCAAGAAGAGGAAAATCATG+AGG | 0.655632 | 2.4:+7739785 | MS.gene31277:CDS |
GACTGTAGAAGAATATCTGT+AGG | 0.659754 | 2.4:-7737699 | None:intergenic |
TTGAGTACCTGAGAGGCCAG+TGG | 0.673530 | 2.4:-7738851 | None:intergenic |
AGATAATTTGAGTACCTGAG+AGG | 0.699878 | 2.4:-7738858 | None:intergenic |
TGAGCAATTGATCCACAACA+GGG | 0.700719 | 2.4:-7737658 | None:intergenic |
ATTGTTACGACTTACCAAAG+GGG | 0.732088 | 2.4:-7731347 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 7731243 | 7739839 | 7731243 | ID=MS.gene31277 |
chr2.4 | mRNA | 7731243 | 7739839 | 7731243 | ID=MS.gene31277.t1;Parent=MS.gene31277 |
chr2.4 | exon | 7731243 | 7731354 | 7731243 | ID=MS.gene31277.t1.exon1;Parent=MS.gene31277.t1 |
chr2.4 | CDS | 7731243 | 7731354 | 7731243 | ID=cds.MS.gene31277.t1;Parent=MS.gene31277.t1 |
chr2.4 | exon | 7731488 | 7731662 | 7731488 | ID=MS.gene31277.t1.exon2;Parent=MS.gene31277.t1 |
chr2.4 | CDS | 7731488 | 7731662 | 7731488 | ID=cds.MS.gene31277.t1;Parent=MS.gene31277.t1 |
chr2.4 | exon | 7737131 | 7737220 | 7737131 | ID=MS.gene31277.t1.exon3;Parent=MS.gene31277.t1 |
chr2.4 | CDS | 7737131 | 7737220 | 7737131 | ID=cds.MS.gene31277.t1;Parent=MS.gene31277.t1 |
chr2.4 | exon | 7737322 | 7737454 | 7737322 | ID=MS.gene31277.t1.exon4;Parent=MS.gene31277.t1 |
chr2.4 | CDS | 7737322 | 7737454 | 7737322 | ID=cds.MS.gene31277.t1;Parent=MS.gene31277.t1 |
chr2.4 | exon | 7737563 | 7737724 | 7737563 | ID=MS.gene31277.t1.exon5;Parent=MS.gene31277.t1 |
chr2.4 | CDS | 7737563 | 7737724 | 7737563 | ID=cds.MS.gene31277.t1;Parent=MS.gene31277.t1 |
chr2.4 | exon | 7738590 | 7738865 | 7738590 | ID=MS.gene31277.t1.exon6;Parent=MS.gene31277.t1 |
chr2.4 | CDS | 7738590 | 7738865 | 7738590 | ID=cds.MS.gene31277.t1;Parent=MS.gene31277.t1 |
chr2.4 | exon | 7739735 | 7739839 | 7739735 | ID=MS.gene31277.t1.exon7;Parent=MS.gene31277.t1 |
chr2.4 | CDS | 7739735 | 7739839 | 7739735 | ID=cds.MS.gene31277.t1;Parent=MS.gene31277.t1 |
Gene Sequence |
Protein sequence |