Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31387.t1 | XP_013465218.1 | 93.7 | 615 | 21 | 2 | 1 | 597 | 1 | 615 | 0.00E+00 | 1099.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31387.t1 | Q9LNC4 | 58.4 | 413 | 148 | 9 | 139 | 537 | 274 | 676 | 3.0e-116 | 420.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31387.t1 | A0A072VCR8 | 93.7 | 615 | 21 | 2 | 1 | 597 | 1 | 615 | 0.0e+00 | 1099.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31387 | MS.gene97648 | PPI |
| MS.gene31387 | MS.gene43055 | PPI |
| MS.gene31387 | MS.gene66785 | PPI |
| MS.gene31387 | MS.gene034474 | PPI |
| MS.gene31387 | MS.gene35392 | PPI |
| MS.gene31387 | MS.gene03822 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31387.t1 | MTR_2g091135 | 94.136 | 648 | 20 | 2 | 1 | 630 | 1 | 648 | 0.0 | 1236 |
| MS.gene31387.t1 | MTR_2g091135 | 93.771 | 594 | 19 | 2 | 1 | 576 | 1 | 594 | 0.0 | 1113 |
| MS.gene31387.t1 | MTR_2g091130 | 92.845 | 601 | 36 | 2 | 1 | 594 | 1 | 601 | 0.0 | 1112 |
| MS.gene31387.t1 | MTR_4g079650 | 62.335 | 454 | 132 | 9 | 124 | 575 | 494 | 910 | 7.84e-174 | 520 |
| MS.gene31387.t1 | MTR_4g079650 | 62.335 | 454 | 132 | 9 | 124 | 575 | 494 | 910 | 1.36e-173 | 520 |
| MS.gene31387.t1 | MTR_4g079650 | 65.608 | 378 | 120 | 6 | 124 | 499 | 494 | 863 | 1.27e-158 | 477 |
| MS.gene31387.t1 | MTR_4g092900 | 44.164 | 317 | 126 | 8 | 258 | 542 | 128 | 425 | 2.33e-68 | 231 |
| MS.gene31387.t1 | MTR_4g092900 | 43.072 | 332 | 138 | 8 | 243 | 542 | 113 | 425 | 2.96e-68 | 231 |
| MS.gene31387.t1 | MTR_4g092880 | 40.625 | 320 | 127 | 9 | 247 | 542 | 121 | 401 | 6.73e-57 | 200 |
| MS.gene31387.t1 | MTR_3g075040 | 40.856 | 257 | 121 | 6 | 290 | 542 | 207 | 436 | 4.46e-48 | 178 |
| MS.gene31387.t1 | MTR_3g075040 | 40.856 | 257 | 121 | 6 | 290 | 542 | 207 | 436 | 1.80e-47 | 179 |
| MS.gene31387.t1 | MTR_4g092880 | 40.541 | 259 | 115 | 8 | 247 | 481 | 121 | 364 | 1.34e-42 | 158 |
| MS.gene31387.t1 | MTR_0018s0090 | 58.095 | 105 | 44 | 0 | 287 | 391 | 195 | 299 | 9.77e-37 | 145 |
| MS.gene31387.t1 | MTR_0018s0090 | 47.260 | 146 | 70 | 2 | 287 | 431 | 195 | 334 | 1.57e-36 | 146 |
| MS.gene31387.t1 | MTR_2g018270 | 56.190 | 105 | 46 | 0 | 293 | 397 | 83 | 187 | 1.35e-34 | 138 |
| MS.gene31387.t1 | MTR_8g070660 | 28.455 | 246 | 157 | 4 | 286 | 528 | 90 | 319 | 3.36e-27 | 114 |
| MS.gene31387.t1 | MTR_6g033375 | 29.762 | 252 | 126 | 5 | 296 | 528 | 75 | 294 | 3.74e-26 | 110 |
| MS.gene31387.t1 | MTR_8g070660 | 44.444 | 108 | 57 | 1 | 286 | 390 | 90 | 197 | 1.54e-25 | 107 |
| MS.gene31387.t1 | MTR_5g069490 | 32.328 | 232 | 124 | 5 | 302 | 530 | 111 | 312 | 1.34e-23 | 102 |
| MS.gene31387.t1 | MTR_2g437920 | 29.412 | 238 | 122 | 7 | 304 | 528 | 146 | 350 | 6.68e-18 | 86.7 |
| MS.gene31387.t1 | MTR_6g045290 | 28.372 | 215 | 123 | 5 | 326 | 530 | 79 | 272 | 1.33e-14 | 77.0 |
| MS.gene31387.t1 | MTR_2g005820 | 38.298 | 94 | 57 | 1 | 296 | 388 | 202 | 295 | 3.16e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31387.t1 | AT1G06230 | 60.215 | 465 | 164 | 8 | 138 | 589 | 273 | 729 | 3.60e-163 | 486 |
| MS.gene31387.t1 | AT1G06230 | 60.215 | 465 | 164 | 8 | 138 | 589 | 273 | 729 | 3.60e-163 | 486 |
| MS.gene31387.t1 | AT1G06230 | 60.215 | 465 | 164 | 8 | 138 | 589 | 273 | 729 | 3.60e-163 | 486 |
| MS.gene31387.t1 | AT1G06230 | 60.215 | 465 | 164 | 8 | 138 | 589 | 273 | 729 | 3.60e-163 | 486 |
| MS.gene31387.t1 | AT1G73150 | 50.000 | 316 | 130 | 6 | 256 | 552 | 86 | 392 | 5.51e-85 | 273 |
| MS.gene31387.t1 | AT1G73150 | 50.000 | 316 | 130 | 6 | 256 | 552 | 86 | 392 | 1.21e-84 | 273 |
| MS.gene31387.t1 | AT1G17790 | 44.762 | 315 | 137 | 7 | 280 | 567 | 122 | 426 | 2.23e-71 | 239 |
| MS.gene31387.t1 | AT5G14270 | 38.314 | 261 | 129 | 7 | 286 | 543 | 134 | 365 | 3.98e-43 | 165 |
| MS.gene31387.t1 | AT5G14270 | 38.314 | 261 | 129 | 7 | 286 | 543 | 134 | 365 | 3.98e-43 | 165 |
| MS.gene31387.t1 | AT5G14270 | 38.314 | 261 | 129 | 7 | 286 | 543 | 134 | 365 | 4.34e-43 | 165 |
| MS.gene31387.t1 | AT3G27260 | 40.000 | 250 | 114 | 8 | 289 | 530 | 176 | 397 | 5.29e-42 | 162 |
| MS.gene31387.t1 | AT3G27260 | 40.000 | 250 | 114 | 8 | 289 | 530 | 176 | 397 | 7.64e-42 | 162 |
| MS.gene31387.t1 | AT3G27260 | 40.000 | 250 | 114 | 8 | 289 | 530 | 176 | 397 | 9.19e-42 | 162 |
| MS.gene31387.t1 | AT3G27260 | 40.000 | 250 | 114 | 8 | 289 | 530 | 127 | 348 | 1.03e-41 | 162 |
| MS.gene31387.t1 | AT3G01770 | 39.331 | 239 | 109 | 5 | 290 | 524 | 130 | 336 | 1.50e-39 | 152 |
| MS.gene31387.t1 | AT3G01770 | 38.559 | 236 | 115 | 5 | 290 | 524 | 130 | 336 | 3.64e-39 | 153 |
| MS.gene31387.t1 | AT5G63320 | 34.266 | 286 | 154 | 7 | 257 | 537 | 132 | 388 | 1.79e-36 | 143 |
| MS.gene31387.t1 | AT5G63320 | 34.266 | 286 | 154 | 7 | 257 | 537 | 132 | 388 | 1.79e-36 | 143 |
| MS.gene31387.t1 | AT5G63320 | 36.187 | 257 | 133 | 6 | 286 | 537 | 158 | 388 | 2.13e-36 | 146 |
| MS.gene31387.t1 | AT5G65630 | 62.000 | 100 | 38 | 0 | 285 | 384 | 165 | 264 | 8.33e-34 | 137 |
| MS.gene31387.t1 | AT5G65630 | 52.830 | 106 | 49 | 1 | 437 | 542 | 374 | 478 | 7.82e-27 | 115 |
| MS.gene31387.t1 | AT5G10550 | 59.000 | 100 | 41 | 0 | 285 | 384 | 170 | 269 | 3.98e-32 | 132 |
| MS.gene31387.t1 | AT5G10550 | 55.208 | 96 | 43 | 0 | 447 | 542 | 378 | 473 | 1.26e-25 | 112 |
| MS.gene31387.t1 | AT2G34900 | 30.645 | 248 | 156 | 3 | 290 | 537 | 1 | 232 | 1.08e-30 | 122 |
| MS.gene31387.t1 | AT2G34900 | 30.645 | 248 | 156 | 3 | 290 | 537 | 111 | 342 | 1.94e-30 | 124 |
| MS.gene31387.t1 | AT5G46550 | 47.107 | 121 | 57 | 2 | 293 | 407 | 73 | 192 | 2.24e-28 | 119 |
| MS.gene31387.t1 | AT3G52280 | 26.984 | 252 | 145 | 4 | 290 | 528 | 112 | 337 | 1.69e-25 | 109 |
| MS.gene31387.t1 | AT3G52280 | 26.984 | 252 | 145 | 4 | 290 | 528 | 95 | 320 | 1.99e-25 | 108 |
Find 168 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGAACATCTTGCCCTTT+AGG | 0.234304 | 2.4:+9243777 | None:intergenic |
| CGGTGAGGTCTTTGGTGATT+AGG | 0.271715 | 2.4:-9244403 | MS.gene31387:CDS |
| CTAACACCATTACACTTAAC+TGG | 0.281372 | 2.4:+9244228 | None:intergenic |
| GGAGAAATAGGACATGGATT+TGG | 0.291511 | 2.4:-9244047 | MS.gene31387:CDS |
| CGAGTCAAGCTCATGGGATT+TGG | 0.293666 | 2.4:+9243555 | None:intergenic |
| AAGCATGGCGTTGGAGAAAT+AGG | 0.295219 | 2.4:-9244059 | MS.gene31387:CDS |
| ATGAGGTATGGCATGCATTA+TGG | 0.295993 | 2.4:-9243684 | MS.gene31387:CDS |
| CTCCGCCAGTTGTGAATTCT+AGG | 0.296493 | 2.4:-9244628 | MS.gene31387:CDS |
| GAGAAATAGGACATGGATTT+GGG | 0.306787 | 2.4:-9244046 | MS.gene31387:CDS |
| GTTGTTCCTCATACTCATTC+TGG | 0.307616 | 2.4:-9244755 | MS.gene31387:CDS |
| GATCGTTATAGGGTTGATAA+TGG | 0.315135 | 2.4:-9244323 | MS.gene31387:CDS |
| GTGTGGATGCAGAGACTCTT+TGG | 0.328188 | 2.4:-9243332 | MS.gene31387:CDS |
| CAACTATAACTGGTGGTTCT+TGG | 0.330269 | 2.4:+9243108 | None:intergenic |
| ACAATAGCATCTAGTTTATC+AGG | 0.330645 | 2.4:+9243423 | None:intergenic |
| CCTTGAAACGGTGAGGTCTT+TGG | 0.332395 | 2.4:-9244411 | MS.gene31387:CDS |
| AGCAGCTCAAGCAGTGATTC+TGG | 0.334206 | 2.4:-9242892 | MS.gene31387:CDS |
| TCAACAGTTGGATAGTGTTT+TGG | 0.336808 | 2.4:-9244672 | MS.gene31387:CDS |
| TCAGCGTCCGGGTCTGATGC+AGG | 0.340500 | 2.4:-9242732 | MS.gene31387:CDS |
| CGCAAGCAAGAATTCCGAAT+TGG | 0.349984 | 2.4:+9244136 | None:intergenic |
| ATGTGTCTGTGGATCGTTAT+AGG | 0.361266 | 2.4:-9244334 | MS.gene31387:CDS |
| GTGTTCCGAGAGAGGCTAAT+AGG | 0.362707 | 2.4:-9244259 | MS.gene31387:CDS |
| CTCGGGGCCTCAACTATAAC+TGG | 0.375349 | 2.4:+9243098 | None:intergenic |
| TGAGGTATGGCATGCATTAT+GGG | 0.375871 | 2.4:-9243683 | MS.gene31387:CDS |
| TTCAATTTCGTCATCATGTT+GGG | 0.377251 | 2.4:+9243368 | None:intergenic |
| GGGGAAATTCGAGTAGATAA+TGG | 0.378135 | 2.4:-9242934 | MS.gene31387:CDS |
| CATCTCACATCCGATGGACT+TGG | 0.390431 | 2.4:-9243898 | MS.gene31387:CDS |
| GGTTCCGGAGGATGGGAATT+CGG | 0.396211 | 2.4:-9244651 | MS.gene31387:CDS |
| AGTGATAGCTCCTCAGCGTC+CGG | 0.408203 | 2.4:-9242744 | MS.gene31387:CDS |
| TACCTGCTTGTCTTTCTCTC+GGG | 0.411814 | 2.4:+9243081 | None:intergenic |
| CAACGGATGGCTGGGAGGTA+TGG | 0.413417 | 2.4:-9244368 | MS.gene31387:CDS |
| TTATCAGGATCGTTTGCCTT+CGG | 0.416620 | 2.4:+9243504 | None:intergenic |
| AGAGGATAAAGTTAATTCCT+TGG | 0.418016 | 2.4:-9244780 | MS.gene31387:CDS |
| ACATCCTCCGCAAACTCCTT+TGG | 0.418265 | 2.4:+9243834 | None:intergenic |
| ACCGCCACCGTCACTGTTGA+TGG | 0.421112 | 2.4:-9244725 | MS.gene31387:CDS |
| GAAGAGAAACAACGGATGGC+TGG | 0.423094 | 2.4:-9244377 | MS.gene31387:CDS |
| ATACCTGCTTGTCTTTCTCT+CGG | 0.424151 | 2.4:+9243080 | None:intergenic |
| GACTTCTTGTTACTCTCAGC+AGG | 0.426666 | 2.4:+9244098 | None:intergenic |
| GAATAGAACTGGTTCGCCTT+AGG | 0.428319 | 2.4:+9244158 | None:intergenic |
| ATTCCGAATTGGAATAGAAC+TGG | 0.439085 | 2.4:+9244147 | None:intergenic |
| CAGCATTATTCGAGGAAAGA+TGG | 0.443395 | 2.4:-9243737 | MS.gene31387:CDS |
| GGGAAATTCGAGTAGATAAT+GGG | 0.444542 | 2.4:-9242933 | MS.gene31387:CDS |
| CCATGACATATAATCCTAAA+GGG | 0.451805 | 2.4:-9243791 | MS.gene31387:CDS |
| GGATAACGGGAATAATGTTT+CGG | 0.452791 | 2.4:-9244696 | MS.gene31387:CDS |
| GATCATTAAGAAACAAAATT+CGG | 0.453860 | 2.4:-9243397 | MS.gene31387:CDS |
| ATCGTTATAGGGTTGATAAT+GGG | 0.456646 | 2.4:-9244322 | MS.gene31387:CDS |
| CTTCAATTTCGTCATCATGT+TGG | 0.459358 | 2.4:+9243367 | None:intergenic |
| GCCATGACATATAATCCTAA+AGG | 0.461758 | 2.4:-9243792 | MS.gene31387:CDS |
| AAGAGATGCGGGAGATTAAG+AGG | 0.463397 | 2.4:-9244448 | MS.gene31387:CDS |
| TCCCCTTGCACAGGCAAGGA+TGG | 0.467964 | 2.4:+9242952 | None:intergenic |
| TAGTCTTGATGTTGTTCAGC+TGG | 0.468758 | 2.4:-9244549 | MS.gene31387:CDS |
| CACTCGGAGGTAGCTTCTGC+AGG | 0.470610 | 2.4:-9244281 | MS.gene31387:CDS |
| TACACGCCAGTTAAGTGTAA+TGG | 0.471994 | 2.4:-9244234 | MS.gene31387:CDS |
| TTGATGGGACGAAGGATAAC+GGG | 0.473241 | 2.4:-9244709 | MS.gene31387:CDS |
| CCCCTTGCACAGGCAAGGAT+GGG | 0.474347 | 2.4:+9242953 | None:intergenic |
| GGTGAAGGTGCAGAAATTGC+GGG | 0.477595 | 2.4:+9243660 | None:intergenic |
| TTATCGTGACATCTTAAAGC+TGG | 0.477773 | 2.4:+9244503 | None:intergenic |
| CCCTTTAGGATTATATGTCA+TGG | 0.480279 | 2.4:+9243791 | None:intergenic |
| GAGATTAAGAGGAAGCTTGA+AGG | 0.483818 | 2.4:-9244437 | MS.gene31387:CDS |
| GAACCAGTTCTATTCCAATT+CGG | 0.484886 | 2.4:-9244150 | MS.gene31387:CDS |
| TAATGTTTCGGTTCAACAGT+TGG | 0.486868 | 2.4:-9244684 | MS.gene31387:CDS |
| TTAAGATGTCACGATAAGAA+AGG | 0.487138 | 2.4:-9244497 | MS.gene31387:CDS |
| TGTGGATGCAGAGACTCTTT+GGG | 0.487754 | 2.4:-9243331 | MS.gene31387:CDS |
| CCAGTGGATGTTGAACGTCT+TGG | 0.491052 | 2.4:-9243942 | MS.gene31387:CDS |
| GTCAAGCTCATGGGATTTGG+AGG | 0.494301 | 2.4:+9243558 | None:intergenic |
| TCTAGCTTGAATAGCAAGTT+CGG | 0.494718 | 2.4:+9243251 | None:intergenic |
| GTCGAGTTTGTATCGTAAGC+AGG | 0.496356 | 2.4:-9244582 | MS.gene31387:CDS |
| AGTCGAGGCTGAGCAAGAAT+TGG | 0.497693 | 2.4:-9243866 | MS.gene31387:CDS |
| TGTGTCTGTGGATCGTTATA+GGG | 0.499515 | 2.4:-9244333 | MS.gene31387:CDS |
| ATTGTAATGTGACTCTATAA+TGG | 0.505035 | 2.4:+9243713 | None:intergenic |
| CCCTTGCACAGGCAAGGATG+GGG | 0.511507 | 2.4:+9242954 | None:intergenic |
| TGGAGCTAAGCGCGCTCACT+CGG | 0.512470 | 2.4:-9244297 | MS.gene31387:CDS |
| TCCAACCTAGAATTCACAAC+TGG | 0.516769 | 2.4:+9244623 | None:intergenic |
| CATGGAAAGAAGCATGGCGT+TGG | 0.520162 | 2.4:-9244068 | MS.gene31387:CDS |
| TAAGATGTCACGATAAGAAA+GGG | 0.520501 | 2.4:-9244496 | MS.gene31387:CDS |
| ATCAACAGTGACGGTGGCGG+TGG | 0.521030 | 2.4:+9244727 | None:intergenic |
| CCAAAGACCTCACCGTTTCA+AGG | 0.522247 | 2.4:+9244411 | None:intergenic |
| GTTGATGGGACGAAGGATAA+CGG | 0.523599 | 2.4:-9244710 | MS.gene31387:CDS |
| GCCAGTTGTGAATTCTAGGT+TGG | 0.525168 | 2.4:-9244624 | MS.gene31387:CDS |
| AGCATTATTCGAGGAAAGAT+GGG | 0.527838 | 2.4:-9243736 | MS.gene31387:CDS |
| AGTGTAATGGTGTTAGAGAA+TGG | 0.529484 | 2.4:-9244221 | MS.gene31387:CDS |
| TGATGAAACACAAGCACGGT+TGG | 0.531315 | 2.4:-9243977 | MS.gene31387:CDS |
| CCCATCCTTGCCTGTGCAAG+GGG | 0.531370 | 2.4:-9242953 | MS.gene31387:CDS |
| ACGGTCAAAGCAAGAGATGC+GGG | 0.533396 | 2.4:-9244459 | MS.gene31387:CDS |
| GCCCCGAGAGAAAGACAAGC+AGG | 0.535875 | 2.4:-9243083 | MS.gene31387:intron |
| CCCCATCCTTGCCTGTGCAA+GGG | 0.536347 | 2.4:-9242954 | MS.gene31387:CDS |
| AAGAGAAACAACGGATGGCT+GGG | 0.537737 | 2.4:-9244376 | MS.gene31387:CDS |
| GATAAGAAAGGGTTGGAGAA+TGG | 0.539091 | 2.4:-9244485 | MS.gene31387:CDS |
| CAAATCACCAAAGGAGTTTG+CGG | 0.541456 | 2.4:-9243841 | MS.gene31387:CDS |
| AGGTGAAGGTGCAGAAATTG+CGG | 0.542157 | 2.4:+9243659 | None:intergenic |
| TACAATCATGAGATGAGGTA+TGG | 0.542192 | 2.4:-9243696 | MS.gene31387:CDS |
| GATGAAACACAAGCACGGTT+GGG | 0.544423 | 2.4:-9243976 | MS.gene31387:CDS |
| AGGGCAAGATGTTCATGTAA+TGG | 0.545167 | 2.4:-9243772 | MS.gene31387:CDS |
| TCATGTCAAGAGGTGGTGGC+CGG | 0.545589 | 2.4:+9243613 | None:intergenic |
| CAGCGTCCGGGTCTGATGCA+GGG | 0.546012 | 2.4:-9242731 | MS.gene31387:CDS |
| CCAAGACGTTCAACATCCAC+TGG | 0.547510 | 2.4:+9243942 | None:intergenic |
| GGGGACTGTAGTTGAAGATA+AGG | 0.547595 | 2.4:-9244867 | MS.gene31387:CDS |
| AATTTCCCCTTGCACAGGCA+AGG | 0.547685 | 2.4:+9242948 | None:intergenic |
| ACTCGAATTTCCCCTTGCAC+AGG | 0.550360 | 2.4:+9242943 | None:intergenic |
| GTGATAGCTCCTCAGCGTCC+GGG | 0.553914 | 2.4:-9242743 | MS.gene31387:CDS |
| GATGTTGTTCAGCTGGAAGA+TGG | 0.557828 | 2.4:-9244542 | MS.gene31387:CDS |
| ATCTCACATCCGATGGACTT+GGG | 0.558638 | 2.4:-9243897 | MS.gene31387:CDS |
| GGTTAGTGAAAGTGTTGAGA+AGG | 0.559698 | 2.4:-9244192 | MS.gene31387:CDS |
| ACCTGCTTGTCTTTCTCTCG+GGG | 0.559840 | 2.4:+9243082 | None:intergenic |
| GCTTGAAGGCGACCTTGAAA+CGG | 0.560792 | 2.4:-9244423 | MS.gene31387:CDS |
| TATAGGGTTGATAATGGGAG+TGG | 0.560910 | 2.4:-9244317 | MS.gene31387:CDS |
| CACCACCTCTTGACATGAGA+AGG | 0.560962 | 2.4:-9243608 | MS.gene31387:CDS |
| TATTATCATCTCACATCCGA+TGG | 0.564977 | 2.4:-9243904 | MS.gene31387:CDS |
| CGGATGGCTGGGAGGTATGG+TGG | 0.565095 | 2.4:-9244365 | MS.gene31387:CDS |
| AAAGTTTGAGCAAATACAAG+AGG | 0.565822 | 2.4:-9243278 | MS.gene31387:CDS |
| GTAGCACCAGAATGAGTATG+AGG | 0.566136 | 2.4:+9244749 | None:intergenic |
| GTAAACCTATTAGCCTCTCT+CGG | 0.567513 | 2.4:+9244254 | None:intergenic |
| CCGCCACCGTCACTGTTGAT+GGG | 0.567667 | 2.4:-9244724 | MS.gene31387:CDS |
| AGCTGAACGAGTCAAGCTCA+TGG | 0.568868 | 2.4:+9243548 | None:intergenic |
| CTTCTCATGTCAAGAGGTGG+TGG | 0.571582 | 2.4:+9243609 | None:intergenic |
| GGAGCCGAATTCCCATCCTC+CGG | 0.571712 | 2.4:+9244647 | None:intergenic |
| AAGGGTTGGAGAATGGTTCA+CGG | 0.577229 | 2.4:-9244478 | MS.gene31387:CDS |
| ACATGATGACGAAATTGAAG+TGG | 0.579909 | 2.4:-9243364 | MS.gene31387:CDS |
| TTCTGCAGGTGTTCCGAGAG+AGG | 0.582364 | 2.4:-9244267 | MS.gene31387:CDS |
| TTGTGACCCTGCATCAGACC+CGG | 0.582433 | 2.4:+9242725 | None:intergenic |
| CCCATCAACAGTGACGGTGG+CGG | 0.584798 | 2.4:+9244724 | None:intergenic |
| TGTGAATTCTAGGTTGGACG+TGG | 0.587021 | 2.4:-9244618 | MS.gene31387:CDS |
| TGAAGTGGACATTGATAGTG+TGG | 0.589368 | 2.4:-9243349 | MS.gene31387:CDS |
| GCTGAACGAGTCAAGCTCAT+GGG | 0.590216 | 2.4:+9243549 | None:intergenic |
| TGGTGTTAGAGAATGGTCAC+GGG | 0.593335 | 2.4:-9244214 | MS.gene31387:CDS |
| AGATGTTCATGTAATGGCGG+AGG | 0.593716 | 2.4:-9243766 | MS.gene31387:CDS |
| ATGGTGTTAGAGAATGGTCA+CGG | 0.594200 | 2.4:-9244215 | MS.gene31387:CDS |
| ATGTCACGATAAGAAAGGGT+TGG | 0.594829 | 2.4:-9244492 | MS.gene31387:CDS |
| TGAGCGAATTGCCCAGCAGA+AGG | 0.599288 | 2.4:-9243220 | MS.gene31387:intron |
| GAAGGAGAAGAGAACACCTA+AGG | 0.603536 | 2.4:-9244174 | MS.gene31387:CDS |
| TGCATCAGACCCGGACGCTG+AGG | 0.609237 | 2.4:+9242734 | None:intergenic |
| GATTCTGGCTCTTCATCAAG+TGG | 0.609326 | 2.4:-9242877 | MS.gene31387:intron |
| CACGGTCAAAGCAAGAGATG+CGG | 0.609503 | 2.4:-9244460 | MS.gene31387:CDS |
| AACCTAGAATTCACAACTGG+CGG | 0.610102 | 2.4:+9244626 | None:intergenic |
| GAGATACAAAGATACTCGGA+GGG | 0.610462 | 2.4:-9244836 | MS.gene31387:CDS |
| GGAGCTATCAGCATTATTCG+AGG | 0.611908 | 2.4:-9243745 | MS.gene31387:CDS |
| CACATTACAATCATGAGATG+AGG | 0.614532 | 2.4:-9243701 | MS.gene31387:CDS |
| TTCACAGTACCCAAGTCCAT+CGG | 0.615883 | 2.4:+9243888 | None:intergenic |
| AGTATGAGGAACAACTTCCA+AGG | 0.625080 | 2.4:+9244763 | None:intergenic |
| ATCCTTCTCATGTCAAGAGG+TGG | 0.625638 | 2.4:+9243606 | None:intergenic |
| TTTGAGCAAATACAAGAGGA+AGG | 0.629083 | 2.4:-9243274 | MS.gene31387:CDS |
| GGCGTTGGAGAAATAGGACA+TGG | 0.629090 | 2.4:-9244053 | MS.gene31387:CDS |
| TCAATCCTTCTCATGTCAAG+AGG | 0.631076 | 2.4:+9243603 | None:intergenic |
| TTGGGTGTTTAATACTCCAG+TGG | 0.632618 | 2.4:-9243958 | MS.gene31387:CDS |
| AAATCACATGGAAAGAAGCA+TGG | 0.633912 | 2.4:-9244074 | MS.gene31387:CDS |
| TGGTGGTTTGAATGTGTCTG+TGG | 0.636743 | 2.4:-9244345 | MS.gene31387:CDS |
| CCTTGCACAGGCAAGGATGG+GGG | 0.638520 | 2.4:+9242955 | None:intergenic |
| AACAAGAAGTCAAAATCACA+TGG | 0.638541 | 2.4:-9244086 | MS.gene31387:CDS |
| TAAAGAGATACAAAGATACT+CGG | 0.640359 | 2.4:-9244840 | MS.gene31387:CDS |
| AGCTAAGCGCGCTCACTCGG+AGG | 0.646095 | 2.4:-9244294 | MS.gene31387:CDS |
| CGTCCCATCAACAGTGACGG+TGG | 0.653161 | 2.4:+9244721 | None:intergenic |
| CTTCGTCCCATCAACAGTGA+CGG | 0.654668 | 2.4:+9244718 | None:intergenic |
| TTCTTGTTACTCTCAGCAGG+CGG | 0.655387 | 2.4:+9244101 | None:intergenic |
| ATGGCTGGGAGGTATGGTGG+TGG | 0.655927 | 2.4:-9244362 | MS.gene31387:CDS |
| GGGGCCTCAACTATAACTGG+TGG | 0.663312 | 2.4:+9243101 | None:intergenic |
| GCAAGATGTTCATGTAATGG+CGG | 0.668019 | 2.4:-9243769 | MS.gene31387:CDS |
| AGAGATACAAAGATACTCGG+AGG | 0.670086 | 2.4:-9244837 | MS.gene31387:CDS |
| AGAACCACCAGTTATAGTTG+AGG | 0.671032 | 2.4:-9243105 | MS.gene31387:CDS |
| CGTCACTGTTGATGGGACGA+AGG | 0.671055 | 2.4:-9244717 | MS.gene31387:CDS |
| ATCACCAAAGGAGTTTGCGG+AGG | 0.671626 | 2.4:-9243838 | MS.gene31387:CDS |
| GATTGAAGAGAAACAACGGA+TGG | 0.679746 | 2.4:-9244381 | MS.gene31387:CDS |
| ATAGCATCTAGTTTATCAGG+TGG | 0.681272 | 2.4:+9243426 | None:intergenic |
| AAGGCGACCTTGAAACGGTG+AGG | 0.688100 | 2.4:-9244418 | MS.gene31387:CDS |
| GAATTGGTACAAATCACCAA+AGG | 0.690101 | 2.4:-9243850 | MS.gene31387:CDS |
| AGAAACAACGGATGGCTGGG+AGG | 0.697772 | 2.4:-9244373 | MS.gene31387:CDS |
| AAGTTGATGAAACACAAGCA+CGG | 0.699310 | 2.4:-9243981 | MS.gene31387:CDS |
| TTAGGATTGAAGAGAAACAA+CGG | 0.702409 | 2.4:-9244385 | MS.gene31387:CDS |
| ACTTGGGTACTGTGAAGTCG+AGG | 0.713645 | 2.4:-9243881 | MS.gene31387:CDS |
| GGTGTTAGAGAATGGTCACG+GGG | 0.773902 | 2.4:-9244213 | MS.gene31387:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTTCAAAGTTTCAG+AGG | - | chr2.4:9242799-9242818 | MS.gene31387:intron | 20.0% |
| !! | GATCATTAAGAAACAAAATT+CGG | - | chr2.4:9244200-9244219 | MS.gene31387:CDS | 20.0% |
| ! | ATTGTAATGTGACTCTATAA+TGG | + | chr2.4:9243887-9243906 | None:intergenic | 25.0% |
| ! | CCTTGTATAACCATAAATTA+CGG | + | chr2.4:9244778-9244797 | None:intergenic | 25.0% |
| ! | CTTGTATAACCATAAATTAC+GGG | + | chr2.4:9244777-9244796 | None:intergenic | 25.0% |
| ! | TAAAGAGATACAAAGATACT+CGG | - | chr2.4:9242757-9242776 | MS.gene31387:intron | 25.0% |
| AAAGTTTGAGCAAATACAAG+AGG | - | chr2.4:9244319-9244338 | MS.gene31387:CDS | 30.0% | |
| AACAAGAAGTCAAAATCACA+TGG | - | chr2.4:9243511-9243530 | MS.gene31387:CDS | 30.0% | |
| AGAGGATAAAGTTAATTCCT+TGG | - | chr2.4:9242817-9242836 | MS.gene31387:intron | 30.0% | |
| CCATGACATATAATCCTAAA+GGG | - | chr2.4:9243806-9243825 | MS.gene31387:CDS | 30.0% | |
| CCGTAATTTATGGTTATACA+AGG | - | chr2.4:9244775-9244794 | MS.gene31387:CDS | 30.0% | |
| TAAGATGTCACGATAAGAAA+GGG | - | chr2.4:9243101-9243120 | MS.gene31387:CDS | 30.0% | |
| TTAAGATGTCACGATAAGAA+AGG | - | chr2.4:9243100-9243119 | MS.gene31387:CDS | 30.0% | |
| TTAGGATTGAAGAGAAACAA+CGG | - | chr2.4:9243212-9243231 | MS.gene31387:intron | 30.0% | |
| TTCAATTTCGTCATCATGTT+GGG | + | chr2.4:9244232-9244251 | None:intergenic | 30.0% | |
| ! | ACAATAGCATCTAGTTTATC+AGG | + | chr2.4:9244177-9244196 | None:intergenic | 30.0% |
| ! | GCTCAAACTTTTCTTATAGT+TGG | + | chr2.4:9244310-9244329 | None:intergenic | 30.0% |
| ! | TATGTCATGTCTCTTTTATC+AGG | + | chr2.4:9244111-9244130 | None:intergenic | 30.0% |
| !! | ATCGTTATAGGGTTGATAAT+GGG | - | chr2.4:9243275-9243294 | MS.gene31387:CDS | 30.0% |
| AAATCACATGGAAAGAAGCA+TGG | - | chr2.4:9243523-9243542 | MS.gene31387:CDS | 35.0% | |
| AGCATTATTCGAGGAAAGAT+GGG | - | chr2.4:9243861-9243880 | MS.gene31387:CDS | 35.0% | |
| ATTCCGAATTGGAATAGAAC+TGG | + | chr2.4:9243453-9243472 | None:intergenic | 35.0% | |
| CAACAATAATAGTCCACAAG+CGG | + | chr2.4:9244545-9244564 | None:intergenic | 35.0% | |
| CACATTACAATCATGAGATG+AGG | - | chr2.4:9243896-9243915 | MS.gene31387:CDS | 35.0% | |
| CAGACATTAAAGTATAAGCG+AGG | + | chr2.4:9244805-9244824 | None:intergenic | 35.0% | |
| CTAACACCATTACACTTAAC+TGG | + | chr2.4:9243372-9243391 | None:intergenic | 35.0% | |
| CTAGAAAAACTCATGCTTTC+CGG | - | chr2.4:9243965-9243984 | MS.gene31387:CDS | 35.0% | |
| CTTCAATTTCGTCATCATGT+TGG | + | chr2.4:9244233-9244252 | None:intergenic | 35.0% | |
| GAACCAGTTCTATTCCAATT+CGG | - | chr2.4:9243447-9243466 | MS.gene31387:CDS | 35.0% | |
| GAATTGGTACAAATCACCAA+AGG | - | chr2.4:9243747-9243766 | MS.gene31387:CDS | 35.0% | |
| GAGAAATAGGACATGGATTT+GGG | - | chr2.4:9243551-9243570 | MS.gene31387:CDS | 35.0% | |
| GATATCTGTCCCGTAATTTA+TGG | - | chr2.4:9244765-9244784 | MS.gene31387:CDS | 35.0% | |
| GCCATGACATATAATCCTAA+AGG | - | chr2.4:9243805-9243824 | MS.gene31387:CDS | 35.0% | |
| GGGAAATTCGAGTAGATAAT+GGG | - | chr2.4:9244664-9244683 | MS.gene31387:CDS | 35.0% | |
| GTATTTGCAAAAGAAGACAG+TGG | + | chr2.4:9244431-9244450 | None:intergenic | 35.0% | |
| TAATGTTTCGGTTCAACAGT+TGG | - | chr2.4:9242913-9242932 | MS.gene31387:CDS | 35.0% | |
| TACAATCATGAGATGAGGTA+TGG | - | chr2.4:9243901-9243920 | MS.gene31387:CDS | 35.0% | |
| TATTATCATCTCACATCCGA+TGG | - | chr2.4:9243693-9243712 | MS.gene31387:CDS | 35.0% | |
| TTATCGTGACATCTTAAAGC+TGG | + | chr2.4:9243097-9243116 | None:intergenic | 35.0% | |
| TTTGAGCAAATACAAGAGGA+AGG | - | chr2.4:9244323-9244342 | MS.gene31387:CDS | 35.0% | |
| ! | ACATGATGACGAAATTGAAG+TGG | - | chr2.4:9244233-9244252 | MS.gene31387:CDS | 35.0% |
| ! | AGTGTAATGGTGTTAGAGAA+TGG | - | chr2.4:9243376-9243395 | MS.gene31387:CDS | 35.0% |
| ! | ATAGCATCTAGTTTATCAGG+TGG | + | chr2.4:9244174-9244193 | None:intergenic | 35.0% |
| ! | TCAACAGTTGGATAGTGTTT+TGG | - | chr2.4:9242925-9242944 | MS.gene31387:CDS | 35.0% |
| ! | TCTAGCTTGAATAGCAAGTT+CGG | + | chr2.4:9244349-9244368 | None:intergenic | 35.0% |
| ! | TGTCAATTTTACCTTCTGCT+GGG | + | chr2.4:9244391-9244410 | None:intergenic | 35.0% |
| ! | TTGTCAATTTTACCTTCTGC+TGG | + | chr2.4:9244392-9244411 | None:intergenic | 35.0% |
| !! | AAGTTGATGAAACACAAGCA+CGG | - | chr2.4:9243616-9243635 | MS.gene31387:CDS | 35.0% |
| !! | CCCTTTAGGATTATATGTCA+TGG | + | chr2.4:9243809-9243828 | None:intergenic | 35.0% |
| !! | GATCGTTATAGGGTTGATAA+TGG | - | chr2.4:9243274-9243293 | MS.gene31387:CDS | 35.0% |
| !! | GGATAACGGGAATAATGTTT+CGG | - | chr2.4:9242901-9242920 | MS.gene31387:CDS | 35.0% |
| AACCTAGAATTCACAACTGG+CGG | + | chr2.4:9242974-9242993 | None:intergenic | 40.0% | |
| ACATGAACATCTTGCCCTTT+AGG | + | chr2.4:9243823-9243842 | None:intergenic | 40.0% | |
| AGAACCACCAGTTATAGTTG+AGG | - | chr2.4:9244492-9244511 | MS.gene31387:CDS | 40.0% | |
| AGAGATACAAAGATACTCGG+AGG | - | chr2.4:9242760-9242779 | MS.gene31387:intron | 40.0% | |
| AGGGCAAGATGTTCATGTAA+TGG | - | chr2.4:9243825-9243844 | MS.gene31387:CDS | 40.0% | |
| AGTATGAGGAACAACTTCCA+AGG | + | chr2.4:9242837-9242856 | None:intergenic | 40.0% | |
| ATACCTGCTTGTCTTTCTCT+CGG | + | chr2.4:9244520-9244539 | None:intergenic | 40.0% | |
| ATGAGGTATGGCATGCATTA+TGG | - | chr2.4:9243913-9243932 | MS.gene31387:CDS | 40.0% | |
| ATGTCACGATAAGAAAGGGT+TGG | - | chr2.4:9243105-9243124 | MS.gene31387:CDS | 40.0% | |
| ATGTGTCTGTGGATCGTTAT+AGG | - | chr2.4:9243263-9243282 | MS.gene31387:CDS | 40.0% | |
| CAAATCACCAAAGGAGTTTG+CGG | - | chr2.4:9243756-9243775 | MS.gene31387:CDS | 40.0% | |
| CAACTATAACTGGTGGTTCT+TGG | + | chr2.4:9244492-9244511 | None:intergenic | 40.0% | |
| CAGCATTATTCGAGGAAAGA+TGG | - | chr2.4:9243860-9243879 | MS.gene31387:CDS | 40.0% | |
| GAGATACAAAGATACTCGGA+GGG | - | chr2.4:9242761-9242780 | MS.gene31387:intron | 40.0% | |
| GAGATTAAGAGGAAGCTTGA+AGG | - | chr2.4:9243160-9243179 | MS.gene31387:intron | 40.0% | |
| GATAAGAAAGGGTTGGAGAA+TGG | - | chr2.4:9243112-9243131 | MS.gene31387:CDS | 40.0% | |
| GATTGAAGAGAAACAACGGA+TGG | - | chr2.4:9243216-9243235 | MS.gene31387:intron | 40.0% | |
| GCAAGATGTTCATGTAATGG+CGG | - | chr2.4:9243828-9243847 | MS.gene31387:CDS | 40.0% | |
| GGAGAAATAGGACATGGATT+TGG | - | chr2.4:9243550-9243569 | MS.gene31387:CDS | 40.0% | |
| GGGGAAATTCGAGTAGATAA+TGG | - | chr2.4:9244663-9244682 | MS.gene31387:CDS | 40.0% | |
| GTTGTTCCTCATACTCATTC+TGG | - | chr2.4:9242842-9242861 | MS.gene31387:intron | 40.0% | |
| TACACGCCAGTTAAGTGTAA+TGG | - | chr2.4:9243363-9243382 | MS.gene31387:CDS | 40.0% | |
| TCAATCCTTCTCATGTCAAG+AGG | + | chr2.4:9243997-9244016 | None:intergenic | 40.0% | |
| TCCAACCTAGAATTCACAAC+TGG | + | chr2.4:9242977-9242996 | None:intergenic | 40.0% | |
| TGAGGTATGGCATGCATTAT+GGG | - | chr2.4:9243914-9243933 | MS.gene31387:CDS | 40.0% | |
| TGTGTCTGTGGATCGTTATA+GGG | - | chr2.4:9243264-9243283 | MS.gene31387:CDS | 40.0% | |
| TTATCAGGATCGTTTGCCTT+CGG | + | chr2.4:9244096-9244115 | None:intergenic | 40.0% | |
| TTGGGTGTTTAATACTCCAG+TGG | - | chr2.4:9243639-9243658 | MS.gene31387:CDS | 40.0% | |
| ! | ATGGTGTTAGAGAATGGTCA+CGG | - | chr2.4:9243382-9243401 | MS.gene31387:CDS | 40.0% |
| ! | GCATGAGTTTTTCTAGACAG+AGG | + | chr2.4:9243961-9243980 | None:intergenic | 40.0% |
| ! | GTAAACCTATTAGCCTCTCT+CGG | + | chr2.4:9243346-9243365 | None:intergenic | 40.0% |
| ! | GTTTTTCTAGACAGAGGTGA+AGG | + | chr2.4:9243955-9243974 | None:intergenic | 40.0% |
| ! | TAGTCTTGATGTTGTTCAGC+TGG | - | chr2.4:9243048-9243067 | MS.gene31387:intron | 40.0% |
| !! | GGTTAGTGAAAGTGTTGAGA+AGG | - | chr2.4:9243405-9243424 | MS.gene31387:CDS | 40.0% |
| !! | TATAGGGTTGATAATGGGAG+TGG | - | chr2.4:9243280-9243299 | MS.gene31387:CDS | 40.0% |
| !! | TGAAGTGGACATTGATAGTG+TGG | - | chr2.4:9244248-9244267 | MS.gene31387:CDS | 40.0% |
| !!! | GTTGGATAGTGTTTTGGTTC+CGG | - | chr2.4:9242931-9242950 | MS.gene31387:CDS | 40.0% |
| AAGAGAAACAACGGATGGCT+GGG | - | chr2.4:9243221-9243240 | MS.gene31387:CDS | 45.0% | |
| AAGAGATGCGGGAGATTAAG+AGG | - | chr2.4:9243149-9243168 | MS.gene31387:intron | 45.0% | |
| AAGGGTTGGAGAATGGTTCA+CGG | - | chr2.4:9243119-9243138 | MS.gene31387:intron | 45.0% | |
| AGATGTTCATGTAATGGCGG+AGG | - | chr2.4:9243831-9243850 | MS.gene31387:CDS | 45.0% | |
| ATCCTTCTCATGTCAAGAGG+TGG | + | chr2.4:9243994-9244013 | None:intergenic | 45.0% | |
| CGCAAGCAAGAATTCCGAAT+TGG | + | chr2.4:9243464-9243483 | None:intergenic | 45.0% | |
| GAAGGAGAAGAGAACACCTA+AGG | - | chr2.4:9243423-9243442 | MS.gene31387:CDS | 45.0% | |
| GACTTCTTGTTACTCTCAGC+AGG | + | chr2.4:9243502-9243521 | None:intergenic | 45.0% | |
| GAGAGAAAGACAAGCAGGTA+TGG | - | chr2.4:9244519-9244538 | MS.gene31387:CDS | 45.0% | |
| GATGAAACACAAGCACGGTT+GGG | - | chr2.4:9243621-9243640 | MS.gene31387:CDS | 45.0% | |
| GATGTTGTTCAGCTGGAAGA+TGG | - | chr2.4:9243055-9243074 | MS.gene31387:intron | 45.0% | |
| GCCAGTTGTGAATTCTAGGT+TGG | - | chr2.4:9242973-9242992 | MS.gene31387:intron | 45.0% | |
| GGAGCTATCAGCATTATTCG+AGG | - | chr2.4:9243852-9243871 | MS.gene31387:CDS | 45.0% | |
| GGGGACTGTAGTTGAAGATA+AGG | - | chr2.4:9242730-9242749 | MS.gene31387:CDS | 45.0% | |
| GTAGCACCAGAATGAGTATG+AGG | + | chr2.4:9242851-9242870 | None:intergenic | 45.0% | |
| GTCGAGTTTGTATCGTAAGC+AGG | - | chr2.4:9243015-9243034 | MS.gene31387:intron | 45.0% | |
| TACCTGCTTGTCTTTCTCTC+GGG | + | chr2.4:9244519-9244538 | None:intergenic | 45.0% | |
| TGATGAAACACAAGCACGGT+TGG | - | chr2.4:9243620-9243639 | MS.gene31387:CDS | 45.0% | |
| TGGTGGTTTGAATGTGTCTG+TGG | - | chr2.4:9243252-9243271 | MS.gene31387:CDS | 45.0% | |
| TGTGGATGCAGAGACTCTTT+GGG | - | chr2.4:9244266-9244285 | MS.gene31387:CDS | 45.0% | |
| TTCACAGTACCCAAGTCCAT+CGG | + | chr2.4:9243712-9243731 | None:intergenic | 45.0% | |
| TTCTTGTTACTCTCAGCAGG+CGG | + | chr2.4:9243499-9243518 | None:intergenic | 45.0% | |
| TTGATGGGACGAAGGATAAC+GGG | - | chr2.4:9242888-9242907 | MS.gene31387:CDS | 45.0% | |
| ! | AAGCATGGCGTTGGAGAAAT+AGG | - | chr2.4:9243538-9243557 | MS.gene31387:CDS | 45.0% |
| ! | AGGTGAAGGTGCAGAAATTG+CGG | + | chr2.4:9243941-9243960 | None:intergenic | 45.0% |
| ! | ATCTCACATCCGATGGACTT+GGG | - | chr2.4:9243700-9243719 | MS.gene31387:CDS | 45.0% |
| ! | GTTGATGGGACGAAGGATAA+CGG | - | chr2.4:9242887-9242906 | MS.gene31387:CDS | 45.0% |
| ! | TGGTGTTAGAGAATGGTCAC+GGG | - | chr2.4:9243383-9243402 | MS.gene31387:CDS | 45.0% |
| ! | TGTGAATTCTAGGTTGGACG+TGG | - | chr2.4:9242979-9242998 | MS.gene31387:intron | 45.0% |
| !! | GAATAGAACTGGTTCGCCTT+AGG | + | chr2.4:9243442-9243461 | None:intergenic | 45.0% |
| !! | GATTCTGGCTCTTCATCAAG+TGG | - | chr2.4:9244720-9244739 | MS.gene31387:CDS | 45.0% |
| !!! | TCGTTTGCCTTCGGCTTTTT+TGG | + | chr2.4:9244087-9244106 | None:intergenic | 45.0% |
| AATTTCCCCTTGCACAGGCA+AGG | + | chr2.4:9244652-9244671 | None:intergenic | 50.0% | |
| ACATCCTCCGCAAACTCCTT+TGG | + | chr2.4:9243766-9243785 | None:intergenic | 50.0% | |
| ACCTGCTTGTCTTTCTCTCG+GGG | + | chr2.4:9244518-9244537 | None:intergenic | 50.0% | |
| ACGGTCAAAGCAAGAGATGC+GGG | - | chr2.4:9243138-9243157 | MS.gene31387:intron | 50.0% | |
| ACTCGAATTTCCCCTTGCAC+AGG | + | chr2.4:9244657-9244676 | None:intergenic | 50.0% | |
| AGCAGCTCAAGCAGTGATTC+TGG | - | chr2.4:9244705-9244724 | MS.gene31387:CDS | 50.0% | |
| AGCTGAACGAGTCAAGCTCA+TGG | + | chr2.4:9244052-9244071 | None:intergenic | 50.0% | |
| AGTCGAGGCTGAGCAAGAAT+TGG | - | chr2.4:9243731-9243750 | MS.gene31387:CDS | 50.0% | |
| ATCACCAAAGGAGTTTGCGG+AGG | - | chr2.4:9243759-9243778 | MS.gene31387:CDS | 50.0% | |
| CACCACCTCTTGACATGAGA+AGG | - | chr2.4:9243989-9244008 | MS.gene31387:CDS | 50.0% | |
| CACGGTCAAAGCAAGAGATG+CGG | - | chr2.4:9243137-9243156 | MS.gene31387:intron | 50.0% | |
| CCAAAGACCTCACCGTTTCA+AGG | + | chr2.4:9243189-9243208 | None:intergenic | 50.0% | |
| CCAAGACGTTCAACATCCAC+TGG | + | chr2.4:9243658-9243677 | None:intergenic | 50.0% | |
| CCAGTGGATGTTGAACGTCT+TGG | - | chr2.4:9243655-9243674 | MS.gene31387:CDS | 50.0% | |
| CCTTGAAACGGTGAGGTCTT+TGG | - | chr2.4:9243186-9243205 | MS.gene31387:intron | 50.0% | |
| CGAGTCAAGCTCATGGGATT+TGG | + | chr2.4:9244045-9244064 | None:intergenic | 50.0% | |
| CTCCGCCAGTTGTGAATTCT+AGG | - | chr2.4:9242969-9242988 | MS.gene31387:CDS | 50.0% | |
| CTTCGTCCCATCAACAGTGA+CGG | + | chr2.4:9242882-9242901 | None:intergenic | 50.0% | |
| CTTCTCATGTCAAGAGGTGG+TGG | + | chr2.4:9243991-9244010 | None:intergenic | 50.0% | |
| GAAGAGAAACAACGGATGGC+TGG | - | chr2.4:9243220-9243239 | MS.gene31387:intron | 50.0% | |
| GCTGAACGAGTCAAGCTCAT+GGG | + | chr2.4:9244051-9244070 | None:intergenic | 50.0% | |
| GCTTGAAGGCGACCTTGAAA+CGG | - | chr2.4:9243174-9243193 | MS.gene31387:intron | 50.0% | |
| GGTGTTAGAGAATGGTCACG+GGG | - | chr2.4:9243384-9243403 | MS.gene31387:CDS | 50.0% | |
| GTCAAGCTCATGGGATTTGG+AGG | + | chr2.4:9244042-9244061 | None:intergenic | 50.0% | |
| GTGTGGATGCAGAGACTCTT+TGG | - | chr2.4:9244265-9244284 | MS.gene31387:CDS | 50.0% | |
| GTGTTCCGAGAGAGGCTAAT+AGG | - | chr2.4:9243338-9243357 | MS.gene31387:CDS | 50.0% | |
| TCCTGCTCCAAAAAAGCCGA+AGG | - | chr2.4:9244077-9244096 | MS.gene31387:CDS | 50.0% | |
| ! | ACTTGGGTACTGTGAAGTCG+AGG | - | chr2.4:9243716-9243735 | MS.gene31387:CDS | 50.0% |
| ! | CATCTCACATCCGATGGACT+TGG | - | chr2.4:9243699-9243718 | MS.gene31387:CDS | 50.0% |
| ! | CATGGAAAGAAGCATGGCGT+TGG | - | chr2.4:9243529-9243548 | MS.gene31387:CDS | 50.0% |
| ! | CGGTGAGGTCTTTGGTGATT+AGG | - | chr2.4:9243194-9243213 | MS.gene31387:intron | 50.0% |
| ! | GGCGTTGGAGAAATAGGACA+TGG | - | chr2.4:9243544-9243563 | MS.gene31387:CDS | 50.0% |
| ! | GGTGAAGGTGCAGAAATTGC+GGG | + | chr2.4:9243940-9243959 | None:intergenic | 50.0% |
| !! | TCTTGGCTCTACAGGAAGCA+TGG | + | chr2.4:9244475-9244494 | None:intergenic | 50.0% |
| !!! | AGTGTTTTGGTTCCGGAGGA+TGG | - | chr2.4:9242938-9242957 | MS.gene31387:CDS | 50.0% |
| !!! | GGATAGTGTTTTGGTTCCGG+AGG | - | chr2.4:9242934-9242953 | MS.gene31387:CDS | 50.0% |
| !!! | GTGTTTTGGTTCCGGAGGAT+GGG | - | chr2.4:9242939-9242958 | MS.gene31387:CDS | 50.0% |
| AAGGCGACCTTGAAACGGTG+AGG | - | chr2.4:9243179-9243198 | MS.gene31387:intron | 55.0% | |
| AGAAACAACGGATGGCTGGG+AGG | - | chr2.4:9243224-9243243 | MS.gene31387:CDS | 55.0% | |
| AGTGATAGCTCCTCAGCGTC+CGG | - | chr2.4:9244853-9244872 | MS.gene31387:CDS | 55.0% | |
| CTCGGGGCCTCAACTATAAC+TGG | + | chr2.4:9244502-9244521 | None:intergenic | 55.0% | |
| GGGGCCTCAACTATAACTGG+TGG | + | chr2.4:9244499-9244518 | None:intergenic | 55.0% | |
| GGTTCCGGAGGATGGGAATT+CGG | - | chr2.4:9242946-9242965 | MS.gene31387:CDS | 55.0% | |
| TGAGCGAATTGCCCAGCAGA+AGG | - | chr2.4:9244377-9244396 | MS.gene31387:CDS | 55.0% | |
| TTCTGCAGGTGTTCCGAGAG+AGG | - | chr2.4:9243330-9243349 | MS.gene31387:CDS | 55.0% | |
| TTGTGACCCTGCATCAGACC+CGG | + | chr2.4:9244875-9244894 | None:intergenic | 55.0% | |
| ! | CGTCACTGTTGATGGGACGA+AGG | - | chr2.4:9242880-9242899 | MS.gene31387:CDS | 55.0% |
| ! | TCATGTCAAGAGGTGGTGGC+CGG | + | chr2.4:9243987-9244006 | None:intergenic | 55.0% |
| !! | CTGGTGGTTCTTGGCTCTAC+AGG | + | chr2.4:9244483-9244502 | None:intergenic | 55.0% |
| !!! | GCCTTCGGCTTTTTTGGAGC+AGG | + | chr2.4:9244081-9244100 | None:intergenic | 55.0% |
| ACCGCCACCGTCACTGTTGA+TGG | - | chr2.4:9242872-9242891 | MS.gene31387:intron | 60.0% | |
| CAACGGATGGCTGGGAGGTA+TGG | - | chr2.4:9243229-9243248 | MS.gene31387:CDS | 60.0% | |
| CAAGCAGGTATGGCCGCTTG+TGG | - | chr2.4:9244529-9244548 | MS.gene31387:CDS | 60.0% | |
| CACTCGGAGGTAGCTTCTGC+AGG | - | chr2.4:9243316-9243335 | MS.gene31387:CDS | 60.0% | |
| CCCATCAACAGTGACGGTGG+CGG | + | chr2.4:9242876-9242895 | None:intergenic | 60.0% | |
| CCCATCCTTGCCTGTGCAAG+GGG | - | chr2.4:9244644-9244663 | MS.gene31387:CDS | 60.0% | |
| CCCCATCCTTGCCTGTGCAA+GGG | - | chr2.4:9244643-9244662 | MS.gene31387:CDS | 60.0% | |
| CCCCTTGCACAGGCAAGGAT+GGG | + | chr2.4:9244647-9244666 | None:intergenic | 60.0% | |
| CCCTTGCACAGGCAAGGATG+GGG | + | chr2.4:9244646-9244665 | None:intergenic | 60.0% | |
| CCGCCACCGTCACTGTTGAT+GGG | - | chr2.4:9242873-9242892 | MS.gene31387:intron | 60.0% | |
| CCTTGCACAGGCAAGGATGG+GGG | + | chr2.4:9244645-9244664 | None:intergenic | 60.0% | |
| CGTCCCATCAACAGTGACGG+TGG | + | chr2.4:9242879-9242898 | None:intergenic | 60.0% | |
| GCCCCGAGAGAAAGACAAGC+AGG | - | chr2.4:9244514-9244533 | MS.gene31387:CDS | 60.0% | |
| GGAGCCGAATTCCCATCCTC+CGG | + | chr2.4:9242953-9242972 | None:intergenic | 60.0% | |
| GTGATAGCTCCTCAGCGTCC+GGG | - | chr2.4:9244854-9244873 | MS.gene31387:CDS | 60.0% | |
| TCCCCTTGCACAGGCAAGGA+TGG | + | chr2.4:9244648-9244667 | None:intergenic | 60.0% | |
| TGGAGCTAAGCGCGCTCACT+CGG | - | chr2.4:9243300-9243319 | MS.gene31387:CDS | 60.0% | |
| ! | ATCAACAGTGACGGTGGCGG+TGG | + | chr2.4:9242873-9242892 | None:intergenic | 60.0% |
| ! | ATGGCTGGGAGGTATGGTGG+TGG | - | chr2.4:9243235-9243254 | MS.gene31387:CDS | 60.0% |
| AGCTAAGCGCGCTCACTCGG+AGG | - | chr2.4:9243303-9243322 | MS.gene31387:CDS | 65.0% | |
| CAGCGTCCGGGTCTGATGCA+GGG | - | chr2.4:9244866-9244885 | MS.gene31387:CDS | 65.0% | |
| CCCCCATCCTTGCCTGTGCA+AGG | - | chr2.4:9244642-9244661 | MS.gene31387:CDS | 65.0% | |
| TCAGCGTCCGGGTCTGATGC+AGG | - | chr2.4:9244865-9244884 | MS.gene31387:CDS | 65.0% | |
| TGCATCAGACCCGGACGCTG+AGG | + | chr2.4:9244866-9244885 | None:intergenic | 65.0% | |
| ! | CGGATGGCTGGGAGGTATGG+TGG | - | chr2.4:9243232-9243251 | MS.gene31387:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 9242722 | 9244897 | 9242722 | ID=MS.gene31387 |
| chr2.4 | mRNA | 9242722 | 9244897 | 9242722 | ID=MS.gene31387.t1;Parent=MS.gene31387 |
| chr2.4 | exon | 9243221 | 9244897 | 9243221 | ID=MS.gene31387.t1.exon1;Parent=MS.gene31387.t1 |
| chr2.4 | CDS | 9243221 | 9244897 | 9243221 | ID=cds.MS.gene31387.t1;Parent=MS.gene31387.t1 |
| chr2.4 | exon | 9243084 | 9243132 | 9243084 | ID=MS.gene31387.t1.exon2;Parent=MS.gene31387.t1 |
| chr2.4 | CDS | 9243084 | 9243132 | 9243084 | ID=cds.MS.gene31387.t1;Parent=MS.gene31387.t1 |
| chr2.4 | exon | 9242878 | 9242991 | 9242878 | ID=MS.gene31387.t1.exon3;Parent=MS.gene31387.t1 |
| chr2.4 | CDS | 9242878 | 9242991 | 9242878 | ID=cds.MS.gene31387.t1;Parent=MS.gene31387.t1 |
| chr2.4 | exon | 9242722 | 9242774 | 9242722 | ID=MS.gene31387.t1.exon4;Parent=MS.gene31387.t1 |
| chr2.4 | CDS | 9242722 | 9242774 | 9242722 | ID=cds.MS.gene31387.t1;Parent=MS.gene31387.t1 |
| Gene Sequence |
| Protein sequence |
