AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31388

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31388.t1 MTR_2g091130 96.708 638 21 0 1 638 1 638 0.0 1257
MS.gene31388.t1 MTR_2g091135 92.395 618 33 3 1 606 1 616 0.0 1134
MS.gene31388.t1 MTR_2g091135 92.605 595 31 2 1 583 1 594 0.0 1100
MS.gene31388.t1 MTR_4g079650 62.584 449 131 8 136 582 497 910 7.87e-174 520
MS.gene31388.t1 MTR_4g079650 62.584 449 131 8 136 582 497 910 1.31e-173 520
MS.gene31388.t1 MTR_4g079650 66.220 373 118 5 136 506 497 863 1.73e-159 480
MS.gene31388.t1 MTR_4g092900 45.367 313 128 8 265 549 128 425 1.14e-69 235
MS.gene31388.t1 MTR_4g092900 44.207 328 140 8 250 549 113 425 1.45e-69 235
MS.gene31388.t1 MTR_4g092880 40.979 327 116 10 254 549 121 401 1.02e-58 206
MS.gene31388.t1 MTR_3g075040 39.313 262 118 6 297 549 207 436 9.16e-46 172
MS.gene31388.t1 MTR_3g075040 39.313 262 118 6 297 549 207 436 2.78e-45 172
MS.gene31388.t1 MTR_4g092880 40.602 266 105 9 254 488 121 364 8.16e-44 162
MS.gene31388.t1 MTR_0018s0090 58.095 105 44 0 294 398 195 299 1.09e-36 145
MS.gene31388.t1 MTR_0018s0090 58.095 105 44 0 294 398 195 299 2.39e-36 145
MS.gene31388.t1 MTR_2g018270 56.190 105 46 0 300 404 83 187 1.20e-34 138
MS.gene31388.t1 MTR_8g070660 29.268 246 155 4 293 535 90 319 9.35e-29 118
MS.gene31388.t1 MTR_6g033375 31.120 241 137 5 303 535 75 294 1.43e-27 114
MS.gene31388.t1 MTR_8g070660 44.444 108 57 1 293 397 90 197 1.52e-25 107
MS.gene31388.t1 MTR_5g069490 31.466 232 126 4 309 537 111 312 1.92e-21 96.7
MS.gene31388.t1 MTR_2g437920 30.131 229 132 6 311 535 146 350 1.98e-17 85.1
MS.gene31388.t1 MTR_6g045290 28.372 215 123 5 333 537 79 272 2.64e-14 76.3
MS.gene31388.t1 MTR_2g005820 38.298 94 57 1 303 395 202 295 3.53e-12 69.7
MS.gene31388.t1 MTR_0662s0020 32.743 113 67 4 300 406 138 247 9.33e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31388.t1 AT1G06230 59.657 466 167 8 144 596 272 729 3.59e-163 486
MS.gene31388.t1 AT1G06230 59.657 466 167 8 144 596 272 729 3.59e-163 486
MS.gene31388.t1 AT1G06230 59.657 466 167 8 144 596 272 729 3.59e-163 486
MS.gene31388.t1 AT1G06230 59.657 466 167 8 144 596 272 729 3.59e-163 486
MS.gene31388.t1 AT1G73150 50.316 316 129 6 263 559 86 392 1.67e-84 272
MS.gene31388.t1 AT1G73150 50.316 316 129 6 263 559 86 392 2.54e-84 272
MS.gene31388.t1 AT1G17790 44.762 315 137 7 287 574 122 426 5.21e-72 241
MS.gene31388.t1 AT3G27260 40.486 247 115 6 297 537 177 397 3.54e-43 166
MS.gene31388.t1 AT3G27260 40.486 247 115 6 297 537 177 397 8.46e-43 165
MS.gene31388.t1 AT3G27260 40.486 247 115 6 297 537 177 397 1.01e-42 165
MS.gene31388.t1 AT3G27260 40.323 248 116 6 296 537 127 348 1.07e-42 165
MS.gene31388.t1 AT5G14270 37.066 259 135 5 293 550 134 365 5.19e-42 162
MS.gene31388.t1 AT5G14270 37.066 259 135 5 293 550 134 365 5.19e-42 162
MS.gene31388.t1 AT5G14270 37.066 259 135 5 293 550 134 365 5.54e-42 162
MS.gene31388.t1 AT3G01770 38.559 236 115 5 297 531 130 336 1.14e-39 152
MS.gene31388.t1 AT3G01770 38.912 239 110 5 297 531 130 336 3.21e-39 153
MS.gene31388.t1 AT5G63320 35.409 257 135 6 293 544 158 388 6.98e-36 141
MS.gene31388.t1 AT5G63320 35.409 257 135 6 293 544 158 388 6.98e-36 141
MS.gene31388.t1 AT5G63320 35.409 257 135 6 293 544 158 388 8.95e-36 144
MS.gene31388.t1 AT5G65630 62.000 100 38 0 292 391 165 264 1.00e-33 136
MS.gene31388.t1 AT5G65630 54.717 106 47 1 444 549 374 478 1.22e-27 118
MS.gene31388.t1 AT2G34900 30.522 249 155 3 297 544 1 232 3.71e-32 126
MS.gene31388.t1 AT5G10550 59.000 100 41 0 292 391 170 269 4.29e-32 131
MS.gene31388.t1 AT5G10550 57.292 96 41 0 454 549 378 473 1.66e-26 114
MS.gene31388.t1 AT2G34900 30.522 249 155 3 297 544 111 342 7.89e-32 127
MS.gene31388.t1 AT5G46550 47.107 121 57 2 300 414 73 192 1.95e-28 119
MS.gene31388.t1 AT3G52280 27.755 245 156 5 297 537 95 322 2.62e-24 105
MS.gene31388.t1 AT3G52280 27.686 242 156 4 297 535 112 337 3.43e-24 105

Find 179 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCGTCTGGGTCTGATTC+AGG 0.166031 2.4:-9268609 MS.gene31388:CDS
ACATGAACATCTTGCCCTTT+AGG 0.234304 2.4:+9269667 None:intergenic
ATGAGGTATGGCTTGGATTA+TGG 0.238032 2.4:-9269574 MS.gene31388:CDS
GGAGAAATGGGACATGGATT+TGG 0.255723 2.4:-9269937 MS.gene31388:CDS
CTAACACCATTACACTTAAC+TGG 0.281372 2.4:+9270118 None:intergenic
CGGTGAGGTCGTTGGTGATT+AGG 0.282820 2.4:-9270293 MS.gene31388:CDS
CTCCGCCAGTTGTGAATTCT+AGG 0.296493 2.4:-9270539 MS.gene31388:CDS
CGAGTCAAGCTCAAGGGATT+TGG 0.299517 2.4:+9269445 None:intergenic
GTTGTTCCTCATACTCATTC+TGG 0.307616 2.4:-9270666 MS.gene31388:CDS
GATCGTTATAGGGTTGATAA+TGG 0.315135 2.4:-9270213 MS.gene31388:CDS
GAGAAATGGGACATGGATTT+GGG 0.327055 2.4:-9269936 MS.gene31388:CDS
GAAATTCGAGTCGATAATAA+TGG 0.328180 2.4:-9268821 MS.gene31388:CDS
GTGTGGATGCAGAGACTCTT+TGG 0.328188 2.4:-9269222 MS.gene31388:CDS
AGCAGCTCAAGCAGTGATTC+TGG 0.334206 2.4:-9268779 MS.gene31388:CDS
CAACTATAACTGGTGGTTCT+TGG 0.335527 2.4:+9268998 None:intergenic
TCAACAGTTGGATAGTGTTT+TGG 0.336808 2.4:-9270583 MS.gene31388:CDS
CGCAAGCAAGAATTCCGAAT+TGG 0.349984 2.4:+9270026 None:intergenic
TTCAATTTCATCATCATGTT+GGG 0.352389 2.4:+9269258 None:intergenic
TGAGGTATGGCTTGGATTAT+GGG 0.352869 2.4:-9269573 MS.gene31388:CDS
CCCTTGCACGGGCAAGGATG+GGG 0.358928 2.4:+9268844 None:intergenic
ATGTGTCTGTGGATCGTTAT+AGG 0.361266 2.4:-9270224 MS.gene31388:CDS
GTGTTCCGAGAGAGGCTAAT+AGG 0.362707 2.4:-9270149 MS.gene31388:CDS
AGTGATAGCTCCTCATCGTC+TGG 0.364047 2.4:-9268621 MS.gene31388:CDS
CTCGGGGCATCAACTATAAC+TGG 0.373580 2.4:+9268988 None:intergenic
TCCCCTTGCACGGGCAAGGA+TGG 0.381629 2.4:+9268842 None:intergenic
CATCTCACATCCGATGGACT+TGG 0.390431 2.4:-9269788 MS.gene31388:CDS
GACTTCTTGTTACTCTCTGC+AGG 0.391383 2.4:+9269988 None:intergenic
GAAGCATGGCGTTGGAGAAA+TGG 0.393841 2.4:-9269950 MS.gene31388:CDS
GGTTCCGGAGGATGGGAATT+CGG 0.396211 2.4:-9270562 MS.gene31388:CDS
CCCCTTGCACGGGCAAGGAT+GGG 0.397080 2.4:+9268843 None:intergenic
ATTGTAATTTGACTCTATAA+TGG 0.399524 2.4:+9269603 None:intergenic
ACCGCTACCGTCACTGTTGA+TGG 0.401915 2.4:-9270636 MS.gene31388:CDS
AAACCTGCTTGTCTTTCTCT+CGG 0.407774 2.4:+9268970 None:intergenic
AACCTGCTTGTCTTTCTCTC+GGG 0.408916 2.4:+9268971 None:intergenic
GCCTCTTGACATGAGGAATC+TGG 0.411079 2.4:-9269494 MS.gene31388:CDS
AGAGGATAACGTTAATTCCT+TGG 0.411103 2.4:-9270691 MS.gene31388:CDS
CAACGGATGGCTGGGAGGTA+TGG 0.413417 2.4:-9270258 MS.gene31388:CDS
TTATCAGGATCGTTTGCCTT+CGG 0.416620 2.4:+9269394 None:intergenic
ACATCCTCCGCAAACTCCTT+TGG 0.418265 2.4:+9269724 None:intergenic
GAAGAGAAACAACGGATGGC+TGG 0.423094 2.4:-9270267 MS.gene31388:CDS
GAATAGAACTGGTTCGCCTT+AGG 0.428319 2.4:+9270048 None:intergenic
CTTCAATTTCATCATCATGT+TGG 0.431836 2.4:+9269257 None:intergenic
ATTCCGAATTGGAATAGAAC+TGG 0.439085 2.4:+9270037 None:intergenic
CAGCATTATTCGAGGAAAGA+TGG 0.443395 2.4:-9269627 MS.gene31388:CDS
CCCCATCCTTGCCCGTGCAA+GGG 0.443866 2.4:-9268844 MS.gene31388:CDS
CTAGAAAGACTCCTGCTTTG+CGG 0.445924 2.4:-9269522 MS.gene31388:CDS
GAGGAGATGTGATGATAAGA+AGG 0.445935 2.4:-9270406 MS.gene31388:CDS
GGATAACGGGAATAATGTTT+CGG 0.452791 2.4:-9270607 MS.gene31388:CDS
GATCATTAAGAAACGAAATT+CGG 0.453860 2.4:-9269287 MS.gene31388:CDS
CATCGTCTGGGTCTGATTCA+GGG 0.454571 2.4:-9268608 MS.gene31388:CDS
ATCGTTATAGGGTTGATAAT+GGG 0.456646 2.4:-9270212 MS.gene31388:CDS
CACTCTGAGGTAGCTTCTGC+AGG 0.459504 2.4:-9270171 MS.gene31388:CDS
AAGCATGGCGTTGGAGAAAT+GGG 0.460416 2.4:-9269949 MS.gene31388:CDS
AGAGGCGGTGGCCGCAAAGC+AGG 0.462424 2.4:+9269511 None:intergenic
TAGTCTTGATGTTGTTCAGC+TGG 0.468758 2.4:-9270460 MS.gene31388:CDS
ATTTGTTAGAACCAGCTTTG+AGG 0.470294 2.4:-9270425 MS.gene31388:CDS
TACACGCCAGTTAAGTGTAA+TGG 0.471994 2.4:-9270124 MS.gene31388:CDS
TTGATGGGACGAAGGATAAC+GGG 0.473241 2.4:-9270620 MS.gene31388:CDS
CCATGACATATAATCCTAAA+GGG 0.476230 2.4:-9269681 MS.gene31388:CDS
CCCTTTAGGATTATATGTCA+TGG 0.477104 2.4:+9269681 None:intergenic
AGTCGAGGCTCAGCAAGAAT+TGG 0.481219 2.4:-9269756 MS.gene31388:CDS
AGGAGATGTGATGATAAGAA+GGG 0.481966 2.4:-9270405 MS.gene31388:CDS
CCAACGACCTCACCGTTTCA+AGG 0.483405 2.4:+9270301 None:intergenic
ACGGTCGAAGCAAGAGATGC+GGG 0.484337 2.4:-9270349 MS.gene31388:CDS
GAACCAGTTCTATTCCAATT+CGG 0.484886 2.4:-9270040 MS.gene31388:CDS
GCCATGACATATAATCCTAA+AGG 0.486072 2.4:-9269682 MS.gene31388:CDS
TAATGTTTCGGTTCAACAGT+TGG 0.486868 2.4:-9270595 MS.gene31388:CDS
TGTGGATGCAGAGACTCTTT+GGG 0.487754 2.4:-9269221 MS.gene31388:CDS
GGGATTAAAAGGAAGCTTGA+GGG 0.488906 2.4:-9270327 MS.gene31388:CDS
CCAGTGGATGTTGAACGTCT+TGG 0.491052 2.4:-9269832 MS.gene31388:CDS
CCTTGCACGGGCAAGGATGG+GGG 0.494527 2.4:+9268845 None:intergenic
TCTAGCTTGAATAGCAAGTT+CGG 0.494718 2.4:+9269141 None:intergenic
TGTGTCTGTGGATCGTTATA+GGG 0.499515 2.4:-9270223 MS.gene31388:CDS
TTAAGAATGGACTGGCTTCA+CGG 0.501932 2.4:-9270368 MS.gene31388:CDS
TTGGAGAATGGTGTTAAGAA+TGG 0.503549 2.4:-9270381 MS.gene31388:CDS
AATTTCCCCTTGCACGGGCA+AGG 0.506581 2.4:+9268838 None:intergenic
AAATTCGAGTCGATAATAAT+GGG 0.507929 2.4:-9268820 MS.gene31388:CDS
CTTCTGCTGGGCAATTCGCT+CGG 0.507968 2.4:+9269111 None:intergenic
TCATGAGATGAGGTATGGCT+TGG 0.513576 2.4:-9269581 MS.gene31388:CDS
GTCAAGCTCAAGGGATTTGG+AGG 0.514668 2.4:+9269448 None:intergenic
TCCAACCTAGAATTCACAAC+TGG 0.516769 2.4:+9270534 None:intergenic
CATGGAAAGAAGCATGGCGT+TGG 0.520162 2.4:-9269958 MS.gene31388:CDS
CCCATCCTTGCCCGTGCAAG+GGG 0.520316 2.4:-9268843 MS.gene31388:CDS
GACTCGAATTTCCCCTTGCA+CGG 0.521051 2.4:+9268832 None:intergenic
GTTGATGGGACGAAGGATAA+CGG 0.523599 2.4:-9270621 MS.gene31388:CDS
GCCAGTTGTGAATTCTAGGT+TGG 0.525168 2.4:-9270535 MS.gene31388:CDS
GTCGAGTTTGAATCGTAGGC+AGG 0.526047 2.4:-9270493 MS.gene31388:CDS
AGCATTATTCGAGGAAAGAT+GGG 0.527838 2.4:-9269626 MS.gene31388:CDS
AGTGTAATGGTGTTAGAGAA+TGG 0.529484 2.4:-9270111 MS.gene31388:CDS
TGATGAAACACAAGCACGGT+TGG 0.531315 2.4:-9269867 MS.gene31388:CDS
TACAATCATGAGATGAGGTA+TGG 0.535160 2.4:-9269586 MS.gene31388:CDS
AAGAGAAACAACGGATGGCT+GGG 0.537737 2.4:-9270266 MS.gene31388:CDS
AATTAGTGAAAGTGTTGAGA+AGG 0.538715 2.4:-9270082 MS.gene31388:CDS
GCTCAAGGGATTTGGAGGGT+TGG 0.539474 2.4:+9269453 None:intergenic
GATAAGAAGGGGTTGGAGAA+TGG 0.540938 2.4:-9270393 MS.gene31388:CDS
CAAATCACCAAAGGAGTTTG+CGG 0.541456 2.4:-9269731 MS.gene31388:CDS
ACCTGCTTGTCTTTCTCTCG+GGG 0.543462 2.4:+9268972 None:intergenic
GATGAAACACAAGCACGGTT+GGG 0.544423 2.4:-9269866 MS.gene31388:CDS
AGGGCAAGATGTTCATGTAA+TGG 0.545167 2.4:-9269662 MS.gene31388:CDS
CCAAGACGTTCAACATCCAC+TGG 0.547510 2.4:+9269832 None:intergenic
ATTCGTCGAGTTTGAATCGT+AGG 0.549038 2.4:-9270497 MS.gene31388:CDS
TCATCACATCTCCTCAAAGC+TGG 0.550575 2.4:+9270414 None:intergenic
GTCTTTCTAGACAGAGGTGA+AGG 0.552966 2.4:+9269535 None:intergenic
GATGTTGTTCAGCTGGAAGA+TGG 0.557828 2.4:-9270453 MS.gene31388:CDS
TTCCTCATGTCAAGAGGCGG+TGG 0.558440 2.4:+9269499 None:intergenic
ATCTCACATCCGATGGACTT+GGG 0.558638 2.4:-9269787 MS.gene31388:CDS
ACTCGAATTTCCCCTTGCAC+GGG 0.558672 2.4:+9268833 None:intergenic
GCTTGAGGGCGACCTTGAAA+CGG 0.560792 2.4:-9270313 MS.gene31388:CDS
TATAGGGTTGATAATGGGAG+TGG 0.560910 2.4:-9270207 MS.gene31388:CDS
TATTATCATCTCACATCCGA+TGG 0.564977 2.4:-9269794 MS.gene31388:CDS
CGGATGGCTGGGAGGTATGG+TGG 0.565095 2.4:-9270255 MS.gene31388:CDS
GAGATACAGAGATACTCGGA+GGG 0.565135 2.4:-9270747 MS.gene31388:CDS
AAAGTTTGAGCAAATACAAG+AGG 0.565822 2.4:-9269168 MS.gene31388:CDS
GTAGCACCAGAATGAGTATG+AGG 0.566136 2.4:+9270660 None:intergenic
GCCCCGAGAGAAAGACAAGC+AGG 0.567318 2.4:-9268973 MS.gene31388:intron
GTAAACCTATTAGCCTCTCT+CGG 0.567513 2.4:+9270144 None:intergenic
GGAGCCGAATTCCCATCCTC+CGG 0.571712 2.4:+9270558 None:intergenic
ATGTGATGATAAGAAGGGGT+TGG 0.572103 2.4:-9270400 MS.gene31388:CDS
ACATGATGATGAAATTGAAG+TGG 0.573976 2.4:-9269254 MS.gene31388:CDS
CGAGCGAATTGCCCAGCAGA+AGG 0.576938 2.4:-9269110 MS.gene31388:intron
GGGGACTGTAGCTGAAGATA+AGG 0.578014 2.4:-9270778 MS.gene31388:CDS
TTGACATGAGGAATCTGGAT+AGG 0.578459 2.4:-9269489 MS.gene31388:CDS
GTGATAGCTCCTCATCGTCT+GGG 0.578733 2.4:-9268620 MS.gene31388:CDS
CCGCTACCGTCACTGTTGAT+GGG 0.580763 2.4:-9270635 MS.gene31388:CDS
TTCTGCAGGTGTTCCGAGAG+AGG 0.582364 2.4:-9270157 MS.gene31388:CDS
CCTTGAAACGGTGAGGTCGT+TGG 0.585920 2.4:-9270301 MS.gene31388:CDS
TGTGAATTCTAGGTTGGACG+TGG 0.587021 2.4:-9270529 MS.gene31388:CDS
AGCTGAACGAGTCAAGCTCA+AGG 0.587721 2.4:+9269438 None:intergenic
TGAAGTGGACATTGATAGTG+TGG 0.589368 2.4:-9269239 MS.gene31388:CDS
AGATGTTCATGTAATGGCGG+AGG 0.593716 2.4:-9269656 MS.gene31388:CDS
GGTGAAGGTGCAGATATAGC+GGG 0.603194 2.4:+9269550 None:intergenic
GAAGGAGAAGAGAACACCTA+AGG 0.603536 2.4:-9270064 MS.gene31388:CDS
AGGTGAAGGTGCAGATATAG+CGG 0.604052 2.4:+9269549 None:intergenic
CCCATCAACAGTGACGGTAG+CGG 0.604577 2.4:+9270635 None:intergenic
GATTCTGGCTCTTCATCAAG+TGG 0.609326 2.4:-9268764 MS.gene31388:intron
AACCTAGAATTCACAACTGG+CGG 0.610102 2.4:+9270537 None:intergenic
TAGAGAGATACAGAGATACT+CGG 0.610318 2.4:-9270751 MS.gene31388:CDS
GGCGTTGGAGAAATGGGACA+TGG 0.610803 2.4:-9269943 MS.gene31388:CDS
GGAGCTATCAGCATTATTCG+AGG 0.611908 2.4:-9269635 MS.gene31388:CDS
CACGGTCGAAGCAAGAGATG+CGG 0.611992 2.4:-9270350 MS.gene31388:CDS
TTCACAGTACCCAAGTCCAT+CGG 0.615883 2.4:+9269778 None:intergenic
GGTCGAAGCAAGAGATGCGG+GGG 0.619895 2.4:-9270347 MS.gene31388:CDS
AGTATGAGGAACAACTTCCA+AGG 0.625080 2.4:+9270674 None:intergenic
CAAATTACAATCATGAGATG+AGG 0.627329 2.4:-9269591 MS.gene31388:CDS
GCTGAACGAGTCAAGCTCAA+GGG 0.627872 2.4:+9269439 None:intergenic
TCCAGATTCCTCATGTCAAG+AGG 0.627985 2.4:+9269493 None:intergenic
TTTGAGCAAATACAAGAGGA+AGG 0.629083 2.4:-9269164 MS.gene31388:CDS
TTGGGTGTTTAATACTCCAG+TGG 0.632618 2.4:-9269848 MS.gene31388:CDS
GGCCACCGCCTCTTGACATG+AGG 0.633195 2.4:-9269501 MS.gene31388:CDS
GCAGGAGTCTTTCTAGACAG+AGG 0.633710 2.4:+9269529 None:intergenic
AAATCACATGGAAAGAAGCA+TGG 0.633912 2.4:-9269964 MS.gene31388:CDS
CGGTCGAAGCAAGAGATGCG+GGG 0.634842 2.4:-9270348 MS.gene31388:CDS
ATGGTGTTAGAGAATGGTCA+TGG 0.636665 2.4:-9270105 MS.gene31388:CDS
TGGTGGTTTGAATGTGTCTG+TGG 0.636743 2.4:-9270235 MS.gene31388:CDS
AACAAGAAGTCAAAATCACA+TGG 0.638541 2.4:-9269976 MS.gene31388:CDS
AGCTAAGCACGCTCACTCTG+AGG 0.643578 2.4:-9270184 MS.gene31388:CDS
TTCTTGTTACTCTCTGCAGG+CGG 0.647277 2.4:+9269991 None:intergenic
ATCAACAGTGACGGTAGCGG+TGG 0.650324 2.4:+9270638 None:intergenic
TCAAGCTCAAGGGATTTGGA+GGG 0.651277 2.4:+9269449 None:intergenic
TGAATCAGACCCAGACGATG+AGG 0.655171 2.4:+9268611 None:intergenic
ATGGCTGGGAGGTATGGTGG+TGG 0.655927 2.4:-9270252 MS.gene31388:CDS
CTTCGTCCCATCAACAGTGA+CGG 0.660339 2.4:+9270629 None:intergenic
CGTCACTGTTGATGGGACGA+AGG 0.662722 2.4:-9270628 MS.gene31388:CDS
GGGGATTAAAAGGAAGCTTG+AGG 0.665812 2.4:-9270328 MS.gene31388:CDS
GAATGGTGTTAAGAATGGAC+TGG 0.666740 2.4:-9270376 MS.gene31388:CDS
GCAAGATGTTCATGTAATGG+CGG 0.668019 2.4:-9269659 MS.gene31388:CDS
ATCACCAAAGGAGTTTGCGG+AGG 0.671626 2.4:-9269728 MS.gene31388:CDS
AGATTCCTCATGTCAAGAGG+CGG 0.676274 2.4:+9269496 None:intergenic
GATTGAAGAGAAACAACGGA+TGG 0.679746 2.4:-9270271 MS.gene31388:CDS
GGGGCATCAACTATAACTGG+TGG 0.680239 2.4:+9268991 None:intergenic
GAATTGGTACAAATCACCAA+AGG 0.690101 2.4:-9269740 MS.gene31388:CDS
ACTTGGGTACTGTGAAGTCG+AGG 0.692988 2.4:-9269771 MS.gene31388:CDS
AGAAACAACGGATGGCTGGG+AGG 0.697772 2.4:-9270263 MS.gene31388:CDS
AGGGCGACCTTGAAACGGTG+AGG 0.698598 2.4:-9270308 MS.gene31388:CDS
AAGTTGATGAAACACAAGCA+CGG 0.699310 2.4:-9269871 MS.gene31388:CDS
AGAGATACAGAGATACTCGG+AGG 0.700043 2.4:-9270748 MS.gene31388:CDS
TTAGGATTGAAGAGAAACAA+CGG 0.702409 2.4:-9270275 MS.gene31388:CDS
AGATACAGAGATACTCGGAG+GGG 0.714927 2.4:-9270746 MS.gene31388:CDS
GGAGATGTGATGATAAGAAG+GGG 0.717368 2.4:-9270404 MS.gene31388:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTTCAAAGTTTCAG+AGG - chr2.4:9268676-9268695 MS.gene31388:intron 20.0%
!! ATTGTAATTTGACTCTATAA+TGG + chr2.4:9269785-9269804 None:intergenic 20.0%
! AAATTCGAGTCGATAATAAT+GGG - chr2.4:9270565-9270584 MS.gene31388:CDS 25.0%
! ACCTTGTATAACCTAAATTA+TGG + chr2.4:9270679-9270698 None:intergenic 25.0%
! CCTTGTATAACCTAAATTAT+GGG + chr2.4:9270678-9270697 None:intergenic 25.0%
! GATCATTAAGAAACGAAATT+CGG - chr2.4:9270098-9270117 MS.gene31388:CDS 25.0%
! TTCAATTTCATCATCATGTT+GGG + chr2.4:9270130-9270149 None:intergenic 25.0%
! TTTGAATAAAAGTAAAAGCC+AGG + chr2.4:9270705-9270724 None:intergenic 25.0%
AAAGTTTGAGCAAATACAAG+AGG - chr2.4:9270217-9270236 MS.gene31388:CDS 30.0%
AACAAGAAGTCAAAATCACA+TGG - chr2.4:9269409-9269428 MS.gene31388:CDS 30.0%
AGATATCTGTCCCATAATTT+AGG - chr2.4:9270665-9270684 MS.gene31388:CDS 30.0%
CAAATTACAATCATGAGATG+AGG - chr2.4:9269794-9269813 MS.gene31388:CDS 30.0%
CCATGACATATAATCCTAAA+GGG - chr2.4:9269704-9269723 MS.gene31388:CDS 30.0%
CTTCAATTTCATCATCATGT+TGG + chr2.4:9270131-9270150 None:intergenic 30.0%
GAAATTCGAGTCGATAATAA+TGG - chr2.4:9270564-9270583 MS.gene31388:CDS 30.0%
TTAATATCCAGTGTCTTCTT+TGG - chr2.4:9270319-9270338 MS.gene31388:CDS 30.0%
TTAGGATTGAAGAGAAACAA+CGG - chr2.4:9269110-9269129 MS.gene31388:intron 30.0%
! ACATGATGATGAAATTGAAG+TGG - chr2.4:9270131-9270150 MS.gene31388:CDS 30.0%
! CCCATAATTTAGGTTATACA+AGG - chr2.4:9270675-9270694 MS.gene31388:CDS 30.0%
! GCTCAAACTTTTCTTATAGT+TGG + chr2.4:9270208-9270227 None:intergenic 30.0%
! TATGTCATGTCTCTTTTATC+AGG + chr2.4:9270009-9270028 None:intergenic 30.0%
!! AATTAGTGAAAGTGTTGAGA+AGG - chr2.4:9269303-9269322 MS.gene31388:CDS 30.0%
!! ATCGTTATAGGGTTGATAAT+GGG - chr2.4:9269173-9269192 MS.gene31388:CDS 30.0%
!!! ACAATAGCATCTAGTTTTTC+AGG + chr2.4:9270075-9270094 None:intergenic 30.0%
AAATCACATGGAAAGAAGCA+TGG - chr2.4:9269421-9269440 MS.gene31388:CDS 35.0%
AGAGGATAACGTTAATTCCT+TGG - chr2.4:9268694-9268713 MS.gene31388:intron 35.0%
AGCATTATTCGAGGAAAGAT+GGG - chr2.4:9269759-9269778 MS.gene31388:CDS 35.0%
AGGAGATGTGATGATAAGAA+GGG - chr2.4:9268980-9268999 MS.gene31388:CDS 35.0%
ATTCCGAATTGGAATAGAAC+TGG + chr2.4:9269351-9269370 None:intergenic 35.0%
CAACAATAATAGTCCACAAG+AGG + chr2.4:9270443-9270462 None:intergenic 35.0%
CTAACACCATTACACTTAAC+TGG + chr2.4:9269270-9269289 None:intergenic 35.0%
GAACCAGTTCTATTCCAATT+CGG - chr2.4:9269345-9269364 MS.gene31388:CDS 35.0%
GAATTGGTACAAATCACCAA+AGG - chr2.4:9269645-9269664 MS.gene31388:CDS 35.0%
GCCATGACATATAATCCTAA+AGG - chr2.4:9269703-9269722 MS.gene31388:CDS 35.0%
TAATGTTTCGGTTCAACAGT+TGG - chr2.4:9268790-9268809 MS.gene31388:CDS 35.0%
TACAATCATGAGATGAGGTA+TGG - chr2.4:9269799-9269818 MS.gene31388:CDS 35.0%
TAGAGAGATACAGAGATACT+CGG - chr2.4:9268634-9268653 MS.gene31388:intron 35.0%
TATTATCATCTCACATCCGA+TGG - chr2.4:9269591-9269610 MS.gene31388:CDS 35.0%
TTATTTGCCAAAGAAGACAC+TGG + chr2.4:9270329-9270348 None:intergenic 35.0%
TTTGAGCAAATACAAGAGGA+AGG - chr2.4:9270221-9270240 MS.gene31388:CDS 35.0%
! AGTGTAATGGTGTTAGAGAA+TGG - chr2.4:9269274-9269293 MS.gene31388:CDS 35.0%
! ATTTGTTAGAACCAGCTTTG+AGG - chr2.4:9268960-9268979 MS.gene31388:intron 35.0%
! TCAACAGTTGGATAGTGTTT+TGG - chr2.4:9268802-9268821 MS.gene31388:CDS 35.0%
! TCTAGCTTGAATAGCAAGTT+CGG + chr2.4:9270247-9270266 None:intergenic 35.0%
! TGTCAATTTTACCTTCTGCT+GGG + chr2.4:9270289-9270308 None:intergenic 35.0%
! TTGGAGAATGGTGTTAAGAA+TGG - chr2.4:9269004-9269023 MS.gene31388:intron 35.0%
! TTGTCAATTTTACCTTCTGC+TGG + chr2.4:9270290-9270309 None:intergenic 35.0%
!! AAGTTGATGAAACACAAGCA+CGG - chr2.4:9269514-9269533 MS.gene31388:CDS 35.0%
!! CCCTTTAGGATTATATGTCA+TGG + chr2.4:9269707-9269726 None:intergenic 35.0%
!! GATCGTTATAGGGTTGATAA+TGG - chr2.4:9269172-9269191 MS.gene31388:CDS 35.0%
!! GGATAACGGGAATAATGTTT+CGG - chr2.4:9268778-9268797 MS.gene31388:CDS 35.0%
!!! ATAGCATCTAGTTTTTCAGG+TGG + chr2.4:9270072-9270091 None:intergenic 35.0%
AAACCTGCTTGTCTTTCTCT+CGG + chr2.4:9270418-9270437 None:intergenic 40.0%
AACCTAGAATTCACAACTGG+CGG + chr2.4:9268851-9268870 None:intergenic 40.0%
ACATGAACATCTTGCCCTTT+AGG + chr2.4:9269721-9269740 None:intergenic 40.0%
AGGGCAAGATGTTCATGTAA+TGG - chr2.4:9269723-9269742 MS.gene31388:CDS 40.0%
AGTATGAGGAACAACTTCCA+AGG + chr2.4:9268714-9268733 None:intergenic 40.0%
ATGTGATGATAAGAAGGGGT+TGG - chr2.4:9268985-9269004 MS.gene31388:CDS 40.0%
ATGTGTCTGTGGATCGTTAT+AGG - chr2.4:9269161-9269180 MS.gene31388:CDS 40.0%
ATTCGTCGAGTTTGAATCGT+AGG - chr2.4:9268888-9268907 MS.gene31388:intron 40.0%
CAAATCACCAAAGGAGTTTG+CGG - chr2.4:9269654-9269673 MS.gene31388:CDS 40.0%
CAACTATAACTGGTGGTTCT+TGG + chr2.4:9270390-9270409 None:intergenic 40.0%
CAGCATTATTCGAGGAAAGA+TGG - chr2.4:9269758-9269777 MS.gene31388:CDS 40.0%
GAGAAATGGGACATGGATTT+GGG - chr2.4:9269449-9269468 MS.gene31388:CDS 40.0%
GAGGAGATGTGATGATAAGA+AGG - chr2.4:9268979-9268998 MS.gene31388:CDS 40.0%
GATTGAAGAGAAACAACGGA+TGG - chr2.4:9269114-9269133 MS.gene31388:CDS 40.0%
GCAAGATGTTCATGTAATGG+CGG - chr2.4:9269726-9269745 MS.gene31388:CDS 40.0%
GGAGATGTGATGATAAGAAG+GGG - chr2.4:9268981-9269000 MS.gene31388:CDS 40.0%
GGGATTAAAAGGAAGCTTGA+GGG - chr2.4:9269058-9269077 MS.gene31388:intron 40.0%
GTTGTTCCTCATACTCATTC+TGG - chr2.4:9268719-9268738 MS.gene31388:intron 40.0%
TACACGCCAGTTAAGTGTAA+TGG - chr2.4:9269261-9269280 MS.gene31388:CDS 40.0%
TAGGTTATACAAGGTCAACC+TGG - chr2.4:9270684-9270703 MS.gene31388:CDS 40.0%
TCCAACCTAGAATTCACAAC+TGG + chr2.4:9268854-9268873 None:intergenic 40.0%
TGTGTCTGTGGATCGTTATA+GGG - chr2.4:9269162-9269181 MS.gene31388:CDS 40.0%
TTATCAGGATCGTTTGCCTT+CGG + chr2.4:9269994-9270013 None:intergenic 40.0%
TTGACATGAGGAATCTGGAT+AGG - chr2.4:9269896-9269915 MS.gene31388:CDS 40.0%
TTGGGTGTTTAATACTCCAG+TGG - chr2.4:9269537-9269556 MS.gene31388:CDS 40.0%
! ATGAGGTATGGCTTGGATTA+TGG - chr2.4:9269811-9269830 MS.gene31388:CDS 40.0%
! ATGGTGTTAGAGAATGGTCA+TGG - chr2.4:9269280-9269299 MS.gene31388:CDS 40.0%
! GAATGGTGTTAAGAATGGAC+TGG - chr2.4:9269009-9269028 MS.gene31388:intron 40.0%
! GTAAACCTATTAGCCTCTCT+CGG + chr2.4:9269244-9269263 None:intergenic 40.0%
! TAGTCTTGATGTTGTTCAGC+TGG - chr2.4:9268925-9268944 MS.gene31388:intron 40.0%
! TGAGGTATGGCTTGGATTAT+GGG - chr2.4:9269812-9269831 MS.gene31388:CDS 40.0%
!! TATAGGGTTGATAATGGGAG+TGG - chr2.4:9269178-9269197 MS.gene31388:CDS 40.0%
!! TGAAGTGGACATTGATAGTG+TGG - chr2.4:9270146-9270165 MS.gene31388:CDS 40.0%
!! TTAAGAATGGACTGGCTTCA+CGG - chr2.4:9269017-9269036 MS.gene31388:intron 40.0%
!!! GTTGGATAGTGTTTTGGTTC+CGG - chr2.4:9268808-9268827 MS.gene31388:CDS 40.0%
AACCTGCTTGTCTTTCTCTC+GGG + chr2.4:9270417-9270436 None:intergenic 45.0%
AAGAGAAACAACGGATGGCT+GGG - chr2.4:9269119-9269138 MS.gene31388:CDS 45.0%
AAGAGATGCGGGGGATTAAA+AGG - chr2.4:9269047-9269066 MS.gene31388:intron 45.0%
AGAGATACAGAGATACTCGG+AGG - chr2.4:9268637-9268656 MS.gene31388:intron 45.0%
AGATACAGAGATACTCGGAG+GGG - chr2.4:9268639-9268658 MS.gene31388:intron 45.0%
AGATGTTCATGTAATGGCGG+AGG - chr2.4:9269729-9269748 MS.gene31388:CDS 45.0%
AGATTCCTCATGTCAAGAGG+CGG + chr2.4:9269892-9269911 None:intergenic 45.0%
CGCAAGCAAGAATTCCGAAT+TGG + chr2.4:9269362-9269381 None:intergenic 45.0%
CTAGAAAGACTCCTGCTTTG+CGG - chr2.4:9269863-9269882 MS.gene31388:CDS 45.0%
GAAGGAGAAGAGAACACCTA+AGG - chr2.4:9269321-9269340 MS.gene31388:CDS 45.0%
GACTTCTTGTTACTCTCTGC+AGG + chr2.4:9269400-9269419 None:intergenic 45.0%
GAGAGAAAGACAAGCAGGTT+TGG - chr2.4:9270417-9270436 MS.gene31388:CDS 45.0%
GAGATACAGAGATACTCGGA+GGG - chr2.4:9268638-9268657 MS.gene31388:intron 45.0%
GATAAGAAGGGGTTGGAGAA+TGG - chr2.4:9268992-9269011 MS.gene31388:CDS 45.0%
GATGAAACACAAGCACGGTT+GGG - chr2.4:9269519-9269538 MS.gene31388:CDS 45.0%
GATGTTGTTCAGCTGGAAGA+TGG - chr2.4:9268932-9268951 MS.gene31388:intron 45.0%
GCCAGTTGTGAATTCTAGGT+TGG - chr2.4:9268850-9268869 MS.gene31388:CDS 45.0%
GGAGAAATGGGACATGGATT+TGG - chr2.4:9269448-9269467 MS.gene31388:CDS 45.0%
GGAGCTATCAGCATTATTCG+AGG - chr2.4:9269750-9269769 MS.gene31388:CDS 45.0%
GGGGATTAAAAGGAAGCTTG+AGG - chr2.4:9269057-9269076 MS.gene31388:intron 45.0%
GTAGCACCAGAATGAGTATG+AGG + chr2.4:9268728-9268747 None:intergenic 45.0%
GTCTTTCTAGACAGAGGTGA+AGG + chr2.4:9269853-9269872 None:intergenic 45.0%
TCAAGCTCAAGGGATTTGGA+GGG + chr2.4:9269939-9269958 None:intergenic 45.0%
TCATCACATCTCCTCAAAGC+TGG + chr2.4:9268974-9268993 None:intergenic 45.0%
TCATGAGATGAGGTATGGCT+TGG - chr2.4:9269804-9269823 MS.gene31388:CDS 45.0%
TCCAGATTCCTCATGTCAAG+AGG + chr2.4:9269895-9269914 None:intergenic 45.0%
TGATGAAACACAAGCACGGT+TGG - chr2.4:9269518-9269537 MS.gene31388:CDS 45.0%
TGGTGGTTTGAATGTGTCTG+TGG - chr2.4:9269150-9269169 MS.gene31388:CDS 45.0%
TGTGGATGCAGAGACTCTTT+GGG - chr2.4:9270164-9270183 MS.gene31388:CDS 45.0%
TTCACAGTACCCAAGTCCAT+CGG + chr2.4:9269610-9269629 None:intergenic 45.0%
TTCTTGTTACTCTCTGCAGG+CGG + chr2.4:9269397-9269416 None:intergenic 45.0%
TTGATGGGACGAAGGATAAC+GGG - chr2.4:9268765-9268784 MS.gene31388:CDS 45.0%
! AAGCATGGCGTTGGAGAAAT+GGG - chr2.4:9269436-9269455 MS.gene31388:CDS 45.0%
! AGGTGAAGGTGCAGATATAG+CGG + chr2.4:9269839-9269858 None:intergenic 45.0%
! ATCTCACATCCGATGGACTT+GGG - chr2.4:9269598-9269617 MS.gene31388:CDS 45.0%
! GTTGATGGGACGAAGGATAA+CGG - chr2.4:9268764-9268783 MS.gene31388:intron 45.0%
! TGTGAATTCTAGGTTGGACG+TGG - chr2.4:9268856-9268875 MS.gene31388:CDS 45.0%
!! GAATAGAACTGGTTCGCCTT+AGG + chr2.4:9269340-9269359 None:intergenic 45.0%
!! GATTCTGGCTCTTCATCAAG+TGG - chr2.4:9270621-9270640 MS.gene31388:CDS 45.0%
!!! TCGTTTGCCTTCGGCTTTTT+TGG + chr2.4:9269985-9270004 None:intergenic 45.0%
ACATCCTCCGCAAACTCCTT+TGG + chr2.4:9269664-9269683 None:intergenic 50.0%
ACCTGCTTGTCTTTCTCTCG+GGG + chr2.4:9270416-9270435 None:intergenic 50.0%
ACTCGAATTTCCCCTTGCAC+GGG + chr2.4:9270555-9270574 None:intergenic 50.0%
AGCAGCTCAAGCAGTGATTC+TGG - chr2.4:9270606-9270625 MS.gene31388:CDS 50.0%
AGCTGAACGAGTCAAGCTCA+AGG + chr2.4:9269950-9269969 None:intergenic 50.0%
AGTCGAGGCTCAGCAAGAAT+TGG - chr2.4:9269629-9269648 MS.gene31388:CDS 50.0%
AGTGATAGCTCCTCATCGTC+TGG - chr2.4:9270764-9270783 MS.gene31388:CDS 50.0%
ATCACCAAAGGAGTTTGCGG+AGG - chr2.4:9269657-9269676 MS.gene31388:CDS 50.0%
CATCGTCTGGGTCTGATTCA+GGG - chr2.4:9270777-9270796 MS.gene31388:CDS 50.0%
CCAAGACGTTCAACATCCAC+TGG + chr2.4:9269556-9269575 None:intergenic 50.0%
CCAGTGGATGTTGAACGTCT+TGG - chr2.4:9269553-9269572 MS.gene31388:CDS 50.0%
CGAGTCAAGCTCAAGGGATT+TGG + chr2.4:9269943-9269962 None:intergenic 50.0%
CTCCGCCAGTTGTGAATTCT+AGG - chr2.4:9268846-9268865 MS.gene31388:CDS 50.0%
CTTCGTCCCATCAACAGTGA+CGG + chr2.4:9268759-9268778 None:intergenic 50.0%
GAAGAGAAACAACGGATGGC+TGG - chr2.4:9269118-9269137 MS.gene31388:CDS 50.0%
GACTCGAATTTCCCCTTGCA+CGG + chr2.4:9270556-9270575 None:intergenic 50.0%
GCAGGAGTCTTTCTAGACAG+AGG + chr2.4:9269859-9269878 None:intergenic 50.0%
GCCTCTTGACATGAGGAATC+TGG - chr2.4:9269891-9269910 MS.gene31388:CDS 50.0%
GCTGAACGAGTCAAGCTCAA+GGG + chr2.4:9269949-9269968 None:intergenic 50.0%
GGGGACTGTAGCTGAAGATA+AGG - chr2.4:9268607-9268626 MS.gene31388:CDS 50.0%
GTCAAGCTCAAGGGATTTGG+AGG + chr2.4:9269940-9269959 None:intergenic 50.0%
GTCGAGTTTGAATCGTAGGC+AGG - chr2.4:9268892-9268911 MS.gene31388:intron 50.0%
GTGATAGCTCCTCATCGTCT+GGG - chr2.4:9270765-9270784 MS.gene31388:CDS 50.0%
GTGTGGATGCAGAGACTCTT+TGG - chr2.4:9270163-9270182 MS.gene31388:CDS 50.0%
GTGTTCCGAGAGAGGCTAAT+AGG - chr2.4:9269236-9269255 MS.gene31388:CDS 50.0%
TCATCGTCTGGGTCTGATTC+AGG - chr2.4:9270776-9270795 MS.gene31388:CDS 50.0%
TCCTGCTCCAAAAAAGCCGA+AGG - chr2.4:9269975-9269994 MS.gene31388:CDS 50.0%
TGAATCAGACCCAGACGATG+AGG + chr2.4:9270777-9270796 None:intergenic 50.0%
! ACTTGGGTACTGTGAAGTCG+AGG - chr2.4:9269614-9269633 MS.gene31388:CDS 50.0%
! CATCTCACATCCGATGGACT+TGG - chr2.4:9269597-9269616 MS.gene31388:CDS 50.0%
! CATGGAAAGAAGCATGGCGT+TGG - chr2.4:9269427-9269446 MS.gene31388:CDS 50.0%
! CTCGGGGCATCAACTATAAC+TGG + chr2.4:9270400-9270419 None:intergenic 50.0%
! GAAGCATGGCGTTGGAGAAA+TGG - chr2.4:9269435-9269454 MS.gene31388:CDS 50.0%
! GGGGCATCAACTATAACTGG+TGG + chr2.4:9270397-9270416 None:intergenic 50.0%
! GGTGAAGGTGCAGATATAGC+GGG + chr2.4:9269838-9269857 None:intergenic 50.0%
!!! AGTGTTTTGGTTCCGGAGGA+TGG - chr2.4:9268815-9268834 MS.gene31388:CDS 50.0%
!!! GGATAGTGTTTTGGTTCCGG+AGG - chr2.4:9268811-9268830 MS.gene31388:CDS 50.0%
!!! GTGTTTTGGTTCCGGAGGAT+GGG - chr2.4:9268816-9268835 MS.gene31388:CDS 50.0%
AATTTCCCCTTGCACGGGCA+AGG + chr2.4:9270550-9270569 None:intergenic 55.0%
ACCGCTACCGTCACTGTTGA+TGG - chr2.4:9268749-9268768 MS.gene31388:intron 55.0%
ACGGTCGAAGCAAGAGATGC+GGG - chr2.4:9269036-9269055 MS.gene31388:intron 55.0%
AGAAACAACGGATGGCTGGG+AGG - chr2.4:9269122-9269141 MS.gene31388:CDS 55.0%
AGCTAAGCACGCTCACTCTG+AGG - chr2.4:9269201-9269220 MS.gene31388:CDS 55.0%
CAAGCAGGTTTGGCCTCTTG+TGG - chr2.4:9270427-9270446 MS.gene31388:CDS 55.0%
CACGGTCGAAGCAAGAGATG+CGG - chr2.4:9269035-9269054 MS.gene31388:intron 55.0%
CCAACGACCTCACCGTTTCA+AGG + chr2.4:9269087-9269106 None:intergenic 55.0%
CCCATCAACAGTGACGGTAG+CGG + chr2.4:9268753-9268772 None:intergenic 55.0%
CCGCTACCGTCACTGTTGAT+GGG - chr2.4:9268750-9268769 MS.gene31388:intron 55.0%
CCTTGAAACGGTGAGGTCGT+TGG - chr2.4:9269084-9269103 MS.gene31388:intron 55.0%
CTTCTGCTGGGCAATTCGCT+CGG + chr2.4:9270277-9270296 None:intergenic 55.0%
GCTCAAGGGATTTGGAGGGT+TGG + chr2.4:9269935-9269954 None:intergenic 55.0%
GCTTGAGGGCGACCTTGAAA+CGG - chr2.4:9269072-9269091 MS.gene31388:intron 55.0%
GGTTCCGGAGGATGGGAATT+CGG - chr2.4:9268823-9268842 MS.gene31388:CDS 55.0%
TTCCTCATGTCAAGAGGCGG+TGG + chr2.4:9269889-9269908 None:intergenic 55.0%
TTCTGCAGGTGTTCCGAGAG+AGG - chr2.4:9269228-9269247 MS.gene31388:CDS 55.0%
! ATCAACAGTGACGGTAGCGG+TGG + chr2.4:9268750-9268769 None:intergenic 55.0%
! CGTCACTGTTGATGGGACGA+AGG - chr2.4:9268757-9268776 MS.gene31388:intron 55.0%
! GGCGTTGGAGAAATGGGACA+TGG - chr2.4:9269442-9269461 MS.gene31388:CDS 55.0%
!! CACTCTGAGGTAGCTTCTGC+AGG - chr2.4:9269214-9269233 MS.gene31388:CDS 55.0%
!! CGGTGAGGTCGTTGGTGATT+AGG - chr2.4:9269092-9269111 MS.gene31388:intron 55.0%
!! CTGGTGGTTCTTGGCTCTAC+AGG + chr2.4:9270381-9270400 None:intergenic 55.0%
!!! GCCTTCGGCTTTTTTGGAGC+AGG + chr2.4:9269979-9269998 None:intergenic 55.0%
AGGGCGACCTTGAAACGGTG+AGG - chr2.4:9269077-9269096 MS.gene31388:intron 60.0%
CAACGGATGGCTGGGAGGTA+TGG - chr2.4:9269127-9269146 MS.gene31388:CDS 60.0%
CGAGCGAATTGCCCAGCAGA+AGG - chr2.4:9270275-9270294 MS.gene31388:CDS 60.0%
CGGTCGAAGCAAGAGATGCG+GGG - chr2.4:9269037-9269056 MS.gene31388:intron 60.0%
GCCCCGAGAGAAAGACAAGC+AGG - chr2.4:9270412-9270431 MS.gene31388:CDS 60.0%
GGAGCCGAATTCCCATCCTC+CGG + chr2.4:9268830-9268849 None:intergenic 60.0%
GGTCGAAGCAAGAGATGCGG+GGG - chr2.4:9269038-9269057 MS.gene31388:intron 60.0%
! ATGGCTGGGAGGTATGGTGG+TGG - chr2.4:9269133-9269152 MS.gene31388:CDS 60.0%
CCCATCCTTGCCCGTGCAAG+GGG - chr2.4:9270542-9270561 MS.gene31388:CDS 65.0%
CCCCATCCTTGCCCGTGCAA+GGG - chr2.4:9270541-9270560 MS.gene31388:CDS 65.0%
CCCCTTGCACGGGCAAGGAT+GGG + chr2.4:9270545-9270564 None:intergenic 65.0%
CCCTTGCACGGGCAAGGATG+GGG + chr2.4:9270544-9270563 None:intergenic 65.0%
CCTTGCACGGGCAAGGATGG+GGG + chr2.4:9270543-9270562 None:intergenic 65.0%
GGCCACCGCCTCTTGACATG+AGG - chr2.4:9269884-9269903 MS.gene31388:CDS 65.0%
TCCCCTTGCACGGGCAAGGA+TGG + chr2.4:9270546-9270565 None:intergenic 65.0%
! CGGATGGCTGGGAGGTATGG+TGG - chr2.4:9269130-9269149 MS.gene31388:CDS 65.0%
AGAGGCGGTGGCCGCAAAGC+AGG + chr2.4:9269877-9269896 None:intergenic 70.0%
CCCCCATCCTTGCCCGTGCA+AGG - chr2.4:9270540-9270559 MS.gene31388:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 9268599 9270808 9268599 ID=MS.gene31388
chr2.4 mRNA 9268599 9270808 9268599 ID=MS.gene31388.t1;Parent=MS.gene31388
chr2.4 exon 9269111 9270808 9269111 ID=MS.gene31388.t1.exon1;Parent=MS.gene31388.t1
chr2.4 CDS 9269111 9270808 9269111 ID=cds.MS.gene31388.t1;Parent=MS.gene31388.t1
chr2.4 exon 9268974 9269022 9268974 ID=MS.gene31388.t1.exon2;Parent=MS.gene31388.t1
chr2.4 CDS 9268974 9269022 9268974 ID=cds.MS.gene31388.t1;Parent=MS.gene31388.t1
chr2.4 exon 9268765 9268881 9268765 ID=MS.gene31388.t1.exon3;Parent=MS.gene31388.t1
chr2.4 CDS 9268765 9268881 9268765 ID=cds.MS.gene31388.t1;Parent=MS.gene31388.t1
chr2.4 exon 9268599 9268651 9268599 ID=MS.gene31388.t1.exon4;Parent=MS.gene31388.t1
chr2.4 CDS 9268599 9268651 9268599 ID=cds.MS.gene31388.t1;Parent=MS.gene31388.t1
Gene Sequence

>MS.gene31388

ATGGATTCGGGGACTGTAGCTGAAGATAAGGTAGTTAGAGAGATACAGAGATACTCGGAGGGGAAAGTATACACGAGAAAAAATTTCAAAGTTTCAGAGGATAACGTTAATTCCTTGGAAGTTGTTCCTCATACTCATTCTGGTGCTACCACCGCTACCGTCACTGTTGATGGGACGAAGGATAACGGGAATAATGTTTCGGTTCAACAGTTGGATAGTGTTTTGGTTCCGGAGGATGGGAATTCGGCTCCGCCAGTTGTGAATTCTAGGTTGGACGTGGTTTCTGAAGATTCGTCGAGTTTGAATCGTAGGCAGGATGAACATTTTAGTCTTGATGTTGTTCAGCTGGAAGATGGTAATGATTTGTTAGAACCAGCTTTGAGGAGATGTGATGATAAGAAGGGGTTGGAGAATGGTGTTAAGAATGGACTGGCTTCACGGTCGAAGCAAGAGATGCGGGGGATTAAAAGGAAGCTTGAGGGCGACCTTGAAACGGTGAGGTCGTTGGTGATTAGGATTGAAGAGAAACAACGGATGGCTGGGAGGTATGGTGGTGGTTTGAATGTGTCTGTGGATCGTTATAGGGTTGATAATGGGAGTGGAGCTAAGCACGCTCACTCTGAGGTAGCTTCTGCAGGTGTTCCGAGAGAGGCTAATAGGTTTACACGCCAGTTAAGTGTAATGGTGTTAGAGAATGGTCATGGAATTAGTGAAAGTGTTGAGAAGGAGAAGAGAACACCTAAGGCGAACCAGTTCTATTCCAATTCGGAATTCTTGCTTGCGAAAGATAAGTTTCCGCCTGCAGAGAGTAACAAGAAGTCAAAATCACATGGAAAGAAGCATGGCGTTGGAGAAATGGGACATGGATTTGGGATAGTATCGAAGTATTTGAAGAACTGTAGCTCATTGCTTGAAAAGTTGATGAAACACAAGCACGGTTGGGTGTTTAATACTCCAGTGGATGTTGAACGTCTTGGTTTGCATGATTATTTTATTATCATCTCACATCCGATGGACTTGGGTACTGTGAAGTCGAGGCTCAGCAAGAATTGGTACAAATCACCAAAGGAGTTTGCGGAGGATGTGAGACTTACTTTTCGTAACGCCATGACATATAATCCTAAAGGGCAAGATGTTCATGTAATGGCGGAGGAGCTATCAGCATTATTCGAGGAAAGATGGGCCATTATAGAGTCAAATTACAATCATGAGATGAGGTATGGCTTGGATTATGGGCCCGCTATATCTGCACCTTCACCTCTGTCTAGAAAGACTCCTGCTTTGCGGCCACCGCCTCTTGACATGAGGAATCTGGATAGGTCAGAATCAATAACCAACCCTCCAAATCCCTTGAGCTTGACTCGTTCAGCTCGAACTCCTGCTCCAAAAAAGCCGAAGGCAAACGATCCTGATAAAAGAGACATGACATACGATGAAAAGCAAAAACTTAGCACACATCTTCAGAATCTACCACCTGAAAAACTAGATGCTATTGTACAGATCATTAAGAAACGAAATTCGGCACTTTCCCAACATGATGATGAAATTGAAGTGGACATTGATAGTGTGGATGCAGAGACTCTTTGGGAGCTTGATAGATATGTTACCAACTATAAGAAAAGTTTGAGCAAATACAAGAGGAAGGCCGAACTTGCTATTCAAGCTAGAGCAGAAGCCGAGCGAATTGCCCAGCAGAAGGTAAAATTGACAATTTCAACGTTTAATATCCAGTGTCTTCTTTGGCAAATAATTTTTACTAATTGAATTTATTTCATGCTTCCTGTAGAGCCAAGAACCACCAGTTATAGTTGATGCCCCGAGAGAAAGACAAGCAGGTTTGGCCTCTTGTGGACTATTATTGTTGATCTCTTATCATCATTCATCAATTAAATTAATTGAAATATTTTGTCTTCTTGTTTCTGAGCAGATGAAAGAAATGCTCCCCCATCCTTGCCCGTGCAAGGGGAAATTCGAGTCGATAATAATGGGAGTAAGACAAGTAGCTCAAGCAGCTCAAGCAGTGATTCTGGCTCTTCATCAAGTGGTATATTAAATAATTATTTAGCAGATATCTGTCCCATAATTTAGGTTATACAAGGTCAACCTGGCTTTTACTTTTATTCAAATTTAATGTTTGATAATAATGTGCTTTTGCAGATTCTGATAGTGATAGCTCCTCATCGTCTGGGTCTGATTCAGGGTCACAGTGA
Protein sequence

>MS.gene31388.t1

MDSGTVAEDKVVREIQRYSEGKVYTRKNFKVSEDNVNSLEVVPHTHSGATTATVTVDGTKDNGNNVSVQQLDSVLVPEDGNSAPPVVNSRLDVVSEDSSSLNRRQDEHFSLDVVQLEDGNDLLEPALRRCDDKKGLENGVKNGLASRSKQEMRGIKRKLEGDLETVRSLVIRIEEKQRMAGRYGGGLNVSVDRYRVDNGSGAKHAHSEVASAGVPREANRFTRQLSVMVLENGHGISESVEKEKRTPKANQFYSNSEFLLAKDKFPPAESNKKSKSHGKKHGVGEMGHGFGIVSKYLKNCSSLLEKLMKHKHGWVFNTPVDVERLGLHDYFIIISHPMDLGTVKSRLSKNWYKSPKEFAEDVRLTFRNAMTYNPKGQDVHVMAEELSALFEERWAIIESNYNHEMRYGLDYGPAISAPSPLSRKTPALRPPPLDMRNLDRSESITNPPNPLSLTRSARTPAPKKPKANDPDKRDMTYDEKQKLSTHLQNLPPEKLDAIVQIIKKRNSALSQHDDEIEVDIDSVDAETLWELDRYVTNYKKSLSKYKRKAELAIQARAEAERIAQQKSQEPPVIVDAPRERQADERNAPPSLPVQGEIRVDNNGSKTSSSSSSSSDSGSSSSDSDSDSSSSSGSDSGSQ