Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31423.t1 | XP_013465160.1 | 99.3 | 286 | 1 | 1 | 1 | 286 | 1 | 285 | 2.20E-166 | 594.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31423.t1 | O49459 | 81.5 | 195 | 34 | 2 | 25 | 218 | 36 | 229 | 1.3e-93 | 344.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31423.t1 | A0A072VM12 | 99.3 | 286 | 1 | 1 | 1 | 286 | 1 | 285 | 1.6e-166 | 594.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene31423.t1 | TF | NAC |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051388 | MS.gene31423 | 0.813608 | 2.35E-51 | -1.69E-46 |
MS.gene055608 | MS.gene31423 | 0.815204 | 1.04E-51 | -1.69E-46 |
MS.gene055773 | MS.gene31423 | 0.870834 | 1.08E-66 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31423.t1 | MTR_2g090735 | 99.301 | 286 | 1 | 1 | 1 | 286 | 1 | 285 | 0.0 | 592 |
MS.gene31423.t1 | MTR_4g078875 | 76.897 | 290 | 57 | 5 | 1 | 286 | 1 | 284 | 7.47e-157 | 438 |
MS.gene31423.t1 | MTR_4g088245 | 64.561 | 285 | 87 | 7 | 9 | 285 | 26 | 304 | 1.30e-123 | 355 |
MS.gene31423.t1 | MTR_2g014680 | 57.432 | 296 | 113 | 5 | 1 | 286 | 1 | 293 | 5.92e-115 | 333 |
MS.gene31423.t1 | MTR_8g069160 | 83.240 | 179 | 29 | 1 | 26 | 204 | 46 | 223 | 1.26e-108 | 315 |
MS.gene31423.t1 | MTR_8g102240 | 73.737 | 198 | 40 | 4 | 27 | 217 | 30 | 222 | 1.20e-95 | 290 |
MS.gene31423.t1 | MTR_8g102240 | 73.737 | 198 | 40 | 4 | 27 | 217 | 30 | 222 | 1.23e-95 | 290 |
MS.gene31423.t1 | MTR_5g053430 | 55.446 | 202 | 86 | 2 | 20 | 221 | 32 | 229 | 2.38e-70 | 224 |
MS.gene31423.t1 | MTR_5g053430 | 55.446 | 202 | 86 | 2 | 20 | 221 | 32 | 229 | 3.66e-70 | 223 |
MS.gene31423.t1 | MTR_1g093680 | 57.068 | 191 | 78 | 2 | 25 | 215 | 37 | 223 | 4.09e-70 | 224 |
MS.gene31423.t1 | MTR_7g033320 | 54.595 | 185 | 80 | 2 | 25 | 208 | 34 | 215 | 2.80e-63 | 207 |
MS.gene31423.t1 | MTR_1g093670 | 51.163 | 172 | 69 | 1 | 44 | 215 | 18 | 174 | 1.58e-49 | 167 |
MS.gene31423.t1 | MTR_4g078895 | 81.132 | 53 | 10 | 0 | 38 | 90 | 26 | 78 | 2.11e-24 | 94.0 |
MS.gene31423.t1 | MTR_1g008740 | 31.841 | 201 | 106 | 9 | 49 | 240 | 13 | 191 | 1.34e-15 | 76.3 |
MS.gene31423.t1 | MTR_1g008740 | 31.841 | 201 | 106 | 9 | 49 | 240 | 27 | 205 | 1.49e-15 | 76.3 |
MS.gene31423.t1 | MTR_6g084430 | 32.402 | 179 | 94 | 7 | 48 | 217 | 4 | 164 | 3.69e-14 | 72.0 |
MS.gene31423.t1 | MTR_7g085260 | 32.995 | 197 | 95 | 9 | 49 | 227 | 17 | 194 | 3.72e-14 | 72.4 |
MS.gene31423.t1 | MTR_3g070030 | 33.333 | 168 | 84 | 7 | 49 | 206 | 19 | 168 | 3.95e-14 | 72.0 |
MS.gene31423.t1 | MTR_3g109340 | 31.492 | 181 | 96 | 8 | 34 | 206 | 9 | 169 | 4.44e-14 | 72.0 |
MS.gene31423.t1 | MTR_2g014700 | 65.116 | 43 | 15 | 0 | 114 | 156 | 44 | 86 | 1.89e-13 | 65.5 |
MS.gene31423.t1 | MTR_3g435150 | 31.694 | 183 | 96 | 7 | 49 | 220 | 16 | 180 | 2.88e-13 | 68.9 |
MS.gene31423.t1 | MTR_7g011120 | 29.348 | 184 | 97 | 6 | 49 | 218 | 8 | 172 | 8.19e-13 | 67.8 |
MS.gene31423.t1 | MTR_4g108760 | 31.579 | 171 | 88 | 7 | 49 | 209 | 17 | 168 | 9.10e-13 | 68.2 |
MS.gene31423.t1 | MTR_6g012670 | 31.746 | 189 | 96 | 9 | 49 | 226 | 20 | 186 | 1.81e-12 | 67.0 |
MS.gene31423.t1 | MTR_2g080010 | 29.448 | 163 | 95 | 6 | 34 | 193 | 1 | 146 | 4.90e-12 | 65.9 |
MS.gene31423.t1 | MTR_1g069805 | 28.313 | 166 | 96 | 6 | 48 | 208 | 9 | 156 | 3.30e-11 | 62.8 |
MS.gene31423.t1 | MTR_3g096920 | 33.562 | 146 | 75 | 7 | 49 | 191 | 7 | 133 | 5.04e-11 | 62.4 |
MS.gene31423.t1 | MTR_3g096920 | 33.562 | 146 | 75 | 7 | 49 | 191 | 7 | 133 | 5.21e-11 | 62.8 |
MS.gene31423.t1 | MTR_8g094580 | 32.192 | 146 | 77 | 6 | 49 | 191 | 7 | 133 | 6.49e-11 | 62.0 |
MS.gene31423.t1 | MTR_2g078700 | 30.952 | 168 | 89 | 7 | 49 | 206 | 23 | 173 | 6.90e-11 | 62.4 |
MS.gene31423.t1 | MTR_3g088110 | 32.639 | 144 | 79 | 6 | 49 | 191 | 7 | 133 | 7.78e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31423.t1 | AT4G28500 | 79.104 | 201 | 40 | 2 | 25 | 224 | 36 | 235 | 9.11e-117 | 338 |
MS.gene31423.t1 | AT1G28470 | 76.289 | 194 | 44 | 1 | 24 | 215 | 50 | 243 | 2.70e-105 | 309 |
MS.gene31423.t1 | AT4G29230 | 71.144 | 201 | 45 | 2 | 25 | 217 | 29 | 224 | 3.09e-97 | 293 |
MS.gene31423.t1 | AT4G29230 | 71.144 | 201 | 45 | 2 | 25 | 217 | 29 | 224 | 9.51e-97 | 293 |
MS.gene31423.t1 | AT4G29230 | 71.144 | 201 | 44 | 2 | 25 | 217 | 29 | 223 | 2.22e-96 | 292 |
MS.gene31423.t1 | AT5G56620 | 68.342 | 199 | 48 | 4 | 27 | 214 | 25 | 219 | 2.10e-90 | 275 |
MS.gene31423.t1 | AT5G56620 | 68.342 | 199 | 48 | 4 | 27 | 214 | 25 | 219 | 2.65e-90 | 274 |
MS.gene31423.t1 | AT5G56620 | 68.342 | 199 | 48 | 4 | 27 | 214 | 25 | 219 | 4.80e-90 | 273 |
MS.gene31423.t1 | AT1G25580 | 57.143 | 189 | 71 | 4 | 25 | 213 | 37 | 215 | 1.47e-65 | 212 |
MS.gene31423.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 30 | 213 | 30 | 218 | 1.12e-54 | 179 |
MS.gene31423.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 30 | 213 | 30 | 218 | 1.87e-54 | 180 |
MS.gene31423.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 30 | 213 | 33 | 221 | 2.10e-54 | 180 |
MS.gene31423.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 30 | 213 | 33 | 221 | 2.29e-54 | 180 |
MS.gene31423.t1 | AT3G01600 | 51.064 | 188 | 84 | 3 | 30 | 210 | 30 | 216 | 1.30e-53 | 178 |
MS.gene31423.t1 | AT3G04060 | 32.961 | 179 | 96 | 6 | 41 | 211 | 12 | 174 | 1.42e-15 | 76.3 |
MS.gene31423.t1 | AT5G18270 | 34.637 | 179 | 91 | 7 | 42 | 211 | 14 | 175 | 1.70e-15 | 75.9 |
MS.gene31423.t1 | AT5G18270 | 34.637 | 179 | 91 | 7 | 42 | 211 | 14 | 175 | 2.70e-15 | 75.5 |
MS.gene31423.t1 | AT3G18400 | 34.337 | 166 | 83 | 8 | 48 | 206 | 4 | 150 | 2.45e-14 | 72.4 |
MS.gene31423.t1 | AT5G07680 | 32.143 | 168 | 91 | 5 | 49 | 209 | 3 | 154 | 2.50e-13 | 69.3 |
MS.gene31423.t1 | AT3G29035 | 32.941 | 170 | 83 | 8 | 49 | 207 | 24 | 173 | 2.71e-13 | 69.3 |
MS.gene31423.t1 | AT5G07680 | 32.143 | 168 | 91 | 5 | 49 | 209 | 17 | 168 | 2.75e-13 | 69.3 |
MS.gene31423.t1 | AT5G39610 | 33.929 | 168 | 82 | 7 | 49 | 206 | 20 | 168 | 4.56e-13 | 68.6 |
MS.gene31423.t1 | AT5G61430 | 31.953 | 169 | 90 | 6 | 49 | 209 | 16 | 167 | 7.39e-13 | 68.2 |
MS.gene31423.t1 | AT1G01720 | 31.333 | 150 | 85 | 5 | 43 | 191 | 1 | 133 | 1.37e-12 | 67.0 |
MS.gene31423.t1 | AT1G02230 | 32.877 | 146 | 73 | 7 | 50 | 188 | 4 | 131 | 1.06e-11 | 65.1 |
MS.gene31423.t1 | AT5G08790 | 32.877 | 146 | 76 | 6 | 49 | 191 | 7 | 133 | 1.13e-11 | 64.3 |
MS.gene31423.t1 | AT1G76420 | 31.844 | 179 | 92 | 9 | 48 | 216 | 21 | 179 | 1.69e-11 | 64.3 |
MS.gene31423.t1 | AT4G35580 | 29.082 | 196 | 106 | 10 | 42 | 226 | 2 | 175 | 3.61e-11 | 63.9 |
MS.gene31423.t1 | AT4G35580 | 29.082 | 196 | 106 | 10 | 42 | 226 | 2 | 175 | 3.87e-11 | 63.5 |
MS.gene31423.t1 | AT4G35580 | 29.082 | 196 | 106 | 10 | 42 | 226 | 2 | 175 | 3.90e-11 | 63.5 |
MS.gene31423.t1 | AT1G33060 | 29.268 | 164 | 89 | 8 | 42 | 198 | 17 | 160 | 5.17e-11 | 63.5 |
MS.gene31423.t1 | AT1G33060 | 29.268 | 164 | 89 | 8 | 42 | 198 | 17 | 160 | 5.25e-11 | 63.5 |
Find 54 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTTGCCACTCACGAAAAC+TGG | 0.294833 | 2.4:+9726717 | None:intergenic |
TCAAGAGATTCTTGAACATT+TGG | 0.312906 | 2.4:-9727149 | MS.gene31423:CDS |
GAAAGCCAGAGAAAACAAAT+TGG | 0.314159 | 2.4:-9726644 | MS.gene31423:CDS |
CACATTGTCTAGGCTGTGTT+TGG | 0.340883 | 2.4:+9726547 | None:intergenic |
AGAGGAGAAAGAAGGAGAAT+TGG | 0.354646 | 2.4:-9726589 | MS.gene31423:CDS |
TTCGTGAGTGGCAAGTTAAA+AGG | 0.359924 | 2.4:-9726711 | MS.gene31423:CDS |
TAATCATAGTACTATCCTTA+TGG | 0.361262 | 2.4:-9727518 | MS.gene31423:CDS |
AATTGACCTGGTAACTTCTC+TGG | 0.367159 | 2.4:+9727031 | None:intergenic |
CATTATTTCCAAGATGGTAT+TGG | 0.373788 | 2.4:+9726613 | None:intergenic |
TATGCAGGTGTCGGCAAAGA+TGG | 0.386728 | 2.4:-9726864 | MS.gene31423:intron |
GAGTTACCTGGATTACCTGC+TGG | 0.403541 | 2.4:-9727193 | MS.gene31423:CDS |
GAAACAAGATGGCATAAAAC+AGG | 0.423381 | 2.4:-9726750 | MS.gene31423:CDS |
GGGATGAACTCATCAATTAA+AGG | 0.427373 | 2.4:+9727091 | None:intergenic |
CCTCTTCATTATTTCCAAGA+TGG | 0.434430 | 2.4:+9726607 | None:intergenic |
GAGTTCATCCCTACTCTTGA+AGG | 0.437508 | 2.4:-9727079 | MS.gene31423:CDS |
CTGTGTTTGGTAGAAAACTT+TGG | 0.443831 | 2.4:+9726560 | None:intergenic |
CCTACTCTTGAAGGAGAGAA+TGG | 0.452976 | 2.4:-9727070 | MS.gene31423:CDS |
AGAGATTCTTGAACATTTGG+AGG | 0.472757 | 2.4:-9727146 | MS.gene31423:CDS |
TAATGTGAAGAACCTGATCT+TGG | 0.475574 | 2.4:+9727437 | None:intergenic |
CCATCGAAAGCATACACAAC+AGG | 0.476509 | 2.4:-9726816 | MS.gene31423:CDS |
TTCACCCCAGCAGGTAATCC+AGG | 0.479471 | 2.4:+9727187 | None:intergenic |
CCATTCTCTCCTTCAAGAGT+AGG | 0.481831 | 2.4:+9727070 | None:intergenic |
GGATCAAACTTCACCCCAGC+AGG | 0.493343 | 2.4:+9727178 | None:intergenic |
GTTATGCACCAATACCATCT+TGG | 0.493624 | 2.4:-9726621 | MS.gene31423:CDS |
TGATCCGACATTTCTTTCAC+AGG | 0.494146 | 2.4:-9726839 | MS.gene31423:CDS |
CATTCTCTCCTTCAAGAGTA+GGG | 0.494352 | 2.4:+9727071 | None:intergenic |
TATCTTTGCGTCTCTCCATA+AGG | 0.495599 | 2.4:+9727503 | None:intergenic |
AGTTACCTGGATTACCTGCT+GGG | 0.500946 | 2.4:-9727192 | MS.gene31423:CDS |
TCATATCAAATGCCAAGATC+AGG | 0.502996 | 2.4:-9727449 | MS.gene31423:intron |
AAAGCCAGAGAAAACAAATT+GGG | 0.504516 | 2.4:-9726643 | MS.gene31423:CDS |
GTTAATGAATTATAGGGTGC+TGG | 0.506242 | 2.4:-9727223 | MS.gene31423:intron |
CCTGTTGTGTATGCTTTCGA+TGG | 0.507588 | 2.4:+9726816 | None:intergenic |
AATAATGAAGAGGAGAAAGA+AGG | 0.526318 | 2.4:-9726597 | MS.gene31423:CDS |
ATGCAGGTGTCGGCAAAGAT+GGG | 0.533540 | 2.4:-9726863 | MS.gene31423:intron |
TCAAGAATCTCTTGATCAGT+AGG | 0.542994 | 2.4:+9727157 | None:intergenic |
GCTGGAATTCATGAGTTACC+TGG | 0.547070 | 2.4:-9727205 | MS.gene31423:CDS |
AAAGATGTACCATCATGGAC+AGG | 0.570055 | 2.4:+9726339 | None:intergenic |
GAATGAAAGATGTACCATCA+TGG | 0.578897 | 2.4:+9726334 | None:intergenic |
ACTCATCCAGAGAAGTTACC+AGG | 0.581252 | 2.4:-9727037 | MS.gene31423:intron |
TTGATATGATGACCACATGT+AGG | 0.596208 | 2.4:+9727463 | None:intergenic |
AATGAACCACCACATTGTCT+AGG | 0.596526 | 2.4:+9726537 | None:intergenic |
TGTAGTTAGTGTAAAGCACA+AGG | 0.598633 | 2.4:+9726676 | None:intergenic |
CAGATGGAAGTGAAACAAGA+TGG | 0.608219 | 2.4:-9726761 | MS.gene31423:CDS |
ATGGCCTGTGAAAGAAATGT+CGG | 0.608865 | 2.4:+9726835 | None:intergenic |
AACATTTGGAGGCAAAAGTG+AGG | 0.622163 | 2.4:-9727135 | MS.gene31423:CDS |
CCATCTTGGAAATAATGAAG+AGG | 0.636615 | 2.4:-9726607 | MS.gene31423:CDS |
ATCAGAACTTGTCCTACATG+TGG | 0.643015 | 2.4:-9727475 | MS.gene31423:CDS |
AAAGTGCACACAGATGCAGA+TGG | 0.660294 | 2.4:-9726777 | MS.gene31423:CDS |
GGCATAAAACAGGTAAAACA+AGG | 0.665333 | 2.4:-9726740 | MS.gene31423:CDS |
CAAACACAGCCTAGACAATG+TGG | 0.666262 | 2.4:-9726546 | MS.gene31423:CDS |
ACACAGCCTAGACAATGTGG+TGG | 0.735435 | 2.4:-9726543 | MS.gene31423:CDS |
TCAAGGTGTGAATCATGAGG+TGG | 0.742861 | 2.4:-9726469 | MS.gene31423:CDS |
TGATCAAGGTGTGAATCATG+AGG | 0.746754 | 2.4:-9726472 | MS.gene31423:CDS |
GTTACCTGGATTACCTGCTG+GGG | 0.752999 | 2.4:-9727191 | MS.gene31423:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATTTGG+TGG | + | chr2.4:9726872-9726891 | None:intergenic | 10.0% |
!! | TACTAATAATATAAATATTG+TGG | - | chr2.4:9726626-9726645 | MS.gene31423:CDS | 10.0% |
!!! | ATGATATTATTATTTTTCTT+TGG | - | chr2.4:9726570-9726589 | MS.gene31423:CDS | 10.0% |
!! | GGCATATATATATATATATT+TGG | + | chr2.4:9726875-9726894 | None:intergenic | 15.0% |
!!! | TTTTCTGATAAAAAACTAAA+TGG | - | chr2.4:9727378-9727397 | MS.gene31423:intron | 15.0% |
!! | CTATGAAAGAATAAAAGAAA+TGG | + | chr2.4:9726912-9726931 | None:intergenic | 20.0% |
!! | GAAATGGAAAGTAAATTATA+AGG | + | chr2.4:9726896-9726915 | None:intergenic | 20.0% |
!!! | ATAGTACTATGATTATTTTC+AGG | + | chr2.4:9726350-9726369 | None:intergenic | 20.0% |
!!! | TAGTACTATGATTATTTTCA+GGG | + | chr2.4:9726349-9726368 | None:intergenic | 20.0% |
!!! | TTAAAGCTTTAACAAAATCA+CGG | + | chr2.4:9726506-9726525 | None:intergenic | 20.0% |
! | AAAAAACTAAATGGTGATCA+AGG | - | chr2.4:9727387-9727406 | MS.gene31423:intron | 25.0% |
! | CACAAAAACTGTCATTATAT+AGG | + | chr2.4:9726964-9726983 | None:intergenic | 25.0% |
! | TAATCATAGTACTATCCTTA+TGG | - | chr2.4:9726355-9726374 | MS.gene31423:CDS | 25.0% |
!! | ATATTTTACGTCTAATATGC+AGG | - | chr2.4:9726994-9727013 | MS.gene31423:intron | 25.0% |
!! | TCTTTCATATCTTTTGATCA+AGG | - | chr2.4:9727468-9727487 | MS.gene31423:CDS | 25.0% |
!! | TGTGGTGTTAATGAATTATA+GGG | - | chr2.4:9726644-9726663 | MS.gene31423:CDS | 25.0% |
!! | TTGTGGTGTTAATGAATTAT+AGG | - | chr2.4:9726643-9726662 | MS.gene31423:CDS | 25.0% |
!!! | TGGTGATGTTAATGATTTTA+TGG | - | chr2.4:9726590-9726609 | MS.gene31423:CDS | 25.0% |
AAAGCCAGAGAAAACAAATT+GGG | - | chr2.4:9727230-9727249 | MS.gene31423:intron | 30.0% | |
AATAATGAAGAGGAGAAAGA+AGG | - | chr2.4:9727276-9727295 | MS.gene31423:intron | 30.0% | |
CATTATTTCCAAGATGGTAT+TGG | + | chr2.4:9727263-9727282 | None:intergenic | 30.0% | |
GTGGTTAATCATAAAAACAG+TGG | - | chr2.4:9727423-9727442 | MS.gene31423:intron | 30.0% | |
TCAAGAGATTCTTGAACATT+TGG | - | chr2.4:9726724-9726743 | MS.gene31423:CDS | 30.0% | |
!! | ATAACCCAATTTGTTTTCTC+TGG | + | chr2.4:9727237-9727256 | None:intergenic | 30.0% |
AGAGATTCTTGAACATTTGG+AGG | - | chr2.4:9726727-9726746 | MS.gene31423:CDS | 35.0% | |
CCATCTTGGAAATAATGAAG+AGG | - | chr2.4:9727266-9727285 | MS.gene31423:intron | 35.0% | |
CCTCTTCATTATTTCCAAGA+TGG | + | chr2.4:9727269-9727288 | None:intergenic | 35.0% | |
CTGTGTTTGGTAGAAAACTT+TGG | + | chr2.4:9727316-9727335 | None:intergenic | 35.0% | |
GAAACAAGATGGCATAAAAC+AGG | - | chr2.4:9727123-9727142 | MS.gene31423:CDS | 35.0% | |
GAAAGCCAGAGAAAACAAAT+TGG | - | chr2.4:9727229-9727248 | MS.gene31423:intron | 35.0% | |
GAATGAAAGATGTACCATCA+TGG | + | chr2.4:9727542-9727561 | None:intergenic | 35.0% | |
GGCATAAAACAGGTAAAACA+AGG | - | chr2.4:9727133-9727152 | MS.gene31423:CDS | 35.0% | |
GGGATGAACTCATCAATTAA+AGG | + | chr2.4:9726785-9726804 | None:intergenic | 35.0% | |
GTTAATGAATTATAGGGTGC+TGG | - | chr2.4:9726650-9726669 | MS.gene31423:CDS | 35.0% | |
TAATGTGAAGAACCTGATCT+TGG | + | chr2.4:9726439-9726458 | None:intergenic | 35.0% | |
TCAAGAATCTCTTGATCAGT+AGG | + | chr2.4:9726719-9726738 | None:intergenic | 35.0% | |
TCATATCAAATGCCAAGATC+AGG | - | chr2.4:9726424-9726443 | MS.gene31423:CDS | 35.0% | |
TCTTCACATTAGTGCATGTT+TGG | - | chr2.4:9726448-9726467 | MS.gene31423:CDS | 35.0% | |
TGTAGTTAGTGTAAAGCACA+AGG | + | chr2.4:9727200-9727219 | None:intergenic | 35.0% | |
TTGATATGATGACCACATGT+AGG | + | chr2.4:9726413-9726432 | None:intergenic | 35.0% | |
AAAGATGTACCATCATGGAC+AGG | + | chr2.4:9727537-9727556 | None:intergenic | 40.0% | |
AACATTTGGAGGCAAAAGTG+AGG | - | chr2.4:9726738-9726757 | MS.gene31423:CDS | 40.0% | |
AATGAACCACCACATTGTCT+AGG | + | chr2.4:9727339-9727358 | None:intergenic | 40.0% | |
AATTGACCTGGTAACTTCTC+TGG | + | chr2.4:9726845-9726864 | None:intergenic | 40.0% | |
AGAGGAGAAAGAAGGAGAAT+TGG | - | chr2.4:9727284-9727303 | MS.gene31423:intron | 40.0% | |
ATCAGAACTTGTCCTACATG+TGG | - | chr2.4:9726398-9726417 | MS.gene31423:CDS | 40.0% | |
ATGGCCTGTGAAAGAAATGT+CGG | + | chr2.4:9727041-9727060 | None:intergenic | 40.0% | |
CAGATGGAAGTGAAACAAGA+TGG | - | chr2.4:9727112-9727131 | MS.gene31423:CDS | 40.0% | |
CATTCTCTCCTTCAAGAGTA+GGG | + | chr2.4:9726805-9726824 | None:intergenic | 40.0% | |
GTTATGCACCAATACCATCT+TGG | - | chr2.4:9727252-9727271 | MS.gene31423:intron | 40.0% | |
TACGTCTAATATGCAGGTGT+CGG | - | chr2.4:9727000-9727019 | MS.gene31423:intron | 40.0% | |
TATCTTTGCGTCTCTCCATA+AGG | + | chr2.4:9726373-9726392 | None:intergenic | 40.0% | |
TGATCAAGGTGTGAATCATG+AGG | - | chr2.4:9727401-9727420 | MS.gene31423:intron | 40.0% | |
TGATCCGACATTTCTTTCAC+AGG | - | chr2.4:9727034-9727053 | MS.gene31423:intron | 40.0% | |
TTCGTGAGTGGCAAGTTAAA+AGG | - | chr2.4:9727162-9727181 | MS.gene31423:CDS | 40.0% | |
! | GTTGTGTGTCATCGTGATTT+TGG | + | chr2.4:9726542-9726561 | None:intergenic | 40.0% |
! | TCTCATTTTCCTGTCCATGA+TGG | - | chr2.4:9727525-9727544 | MS.gene31423:CDS | 40.0% |
! | TTTGGTGGCTTAAATTGACC+TGG | + | chr2.4:9726857-9726876 | None:intergenic | 40.0% |
AAAGTGCACACAGATGCAGA+TGG | - | chr2.4:9727096-9727115 | MS.gene31423:CDS | 45.0% | |
AACTTGCCACTCACGAAAAC+TGG | + | chr2.4:9727159-9727178 | None:intergenic | 45.0% | |
ACTCATCCAGAGAAGTTACC+AGG | - | chr2.4:9726836-9726855 | MS.gene31423:CDS | 45.0% | |
AGTTACCTGGATTACCTGCT+GGG | - | chr2.4:9726681-9726700 | MS.gene31423:CDS | 45.0% | |
CAAACACAGCCTAGACAATG+TGG | - | chr2.4:9727327-9727346 | MS.gene31423:intron | 45.0% | |
CACATTGTCTAGGCTGTGTT+TGG | + | chr2.4:9727329-9727348 | None:intergenic | 45.0% | |
CCATTCTCTCCTTCAAGAGT+AGG | + | chr2.4:9726806-9726825 | None:intergenic | 45.0% | |
CCTACTCTTGAAGGAGAGAA+TGG | - | chr2.4:9726803-9726822 | MS.gene31423:CDS | 45.0% | |
CCTGTTGTGTATGCTTTCGA+TGG | + | chr2.4:9727060-9727079 | None:intergenic | 45.0% | |
GAGTTCATCCCTACTCTTGA+AGG | - | chr2.4:9726794-9726813 | MS.gene31423:CDS | 45.0% | |
GCTGGAATTCATGAGTTACC+TGG | - | chr2.4:9726668-9726687 | MS.gene31423:CDS | 45.0% | |
TCAAGGTGTGAATCATGAGG+TGG | - | chr2.4:9727404-9727423 | MS.gene31423:intron | 45.0% | |
! | CCATCGAAAGCATACACAAC+AGG | - | chr2.4:9727057-9727076 | MS.gene31423:CDS | 45.0% |
ACACAGCCTAGACAATGTGG+TGG | - | chr2.4:9727330-9727349 | MS.gene31423:intron | 50.0% | |
GAGTTACCTGGATTACCTGC+TGG | - | chr2.4:9726680-9726699 | MS.gene31423:CDS | 50.0% | |
GTTACCTGGATTACCTGCTG+GGG | - | chr2.4:9726682-9726701 | MS.gene31423:CDS | 50.0% | |
! | ACAAGGCCAGTTTTCGTGAG+TGG | - | chr2.4:9727150-9727169 | MS.gene31423:CDS | 50.0% |
!! | ATGCAGGTGTCGGCAAAGAT+GGG | - | chr2.4:9727010-9727029 | MS.gene31423:intron | 50.0% |
!! | TATGCAGGTGTCGGCAAAGA+TGG | - | chr2.4:9727009-9727028 | MS.gene31423:intron | 50.0% |
GGATCAAACTTCACCCCAGC+AGG | + | chr2.4:9726698-9726717 | None:intergenic | 55.0% | |
TTCACCCCAGCAGGTAATCC+AGG | + | chr2.4:9726689-9726708 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 9726329 | 9727566 | 9726329 | ID=MS.gene31423 |
chr2.4 | mRNA | 9726329 | 9727566 | 9726329 | ID=MS.gene31423.t1;Parent=MS.gene31423 |
chr2.4 | exon | 9727450 | 9727566 | 9727450 | ID=MS.gene31423.t1.exon1;Parent=MS.gene31423.t1 |
chr2.4 | CDS | 9727450 | 9727566 | 9727450 | ID=cds.MS.gene31423.t1;Parent=MS.gene31423.t1 |
chr2.4 | exon | 9727038 | 9727230 | 9727038 | ID=MS.gene31423.t1.exon2;Parent=MS.gene31423.t1 |
chr2.4 | CDS | 9727038 | 9727230 | 9727038 | ID=cds.MS.gene31423.t1;Parent=MS.gene31423.t1 |
chr2.4 | exon | 9726329 | 9726879 | 9726329 | ID=MS.gene31423.t1.exon3;Parent=MS.gene31423.t1 |
chr2.4 | CDS | 9726329 | 9726879 | 9726329 | ID=cds.MS.gene31423.t1;Parent=MS.gene31423.t1 |
Gene Sequence |
Protein sequence |