Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055773.t1 | XP_013465160.1 | 99.3 | 271 | 1 | 1 | 1 | 271 | 16 | 285 | 1.20E-156 | 562.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055773.t1 | O49459 | 81.5 | 195 | 34 | 2 | 10 | 203 | 36 | 229 | 1.2e-93 | 344.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055773.t1 | A0A072VM12 | 99.3 | 271 | 1 | 1 | 1 | 271 | 16 | 285 | 8.3e-157 | 562.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene055773.t1 | TF | NAC |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055608 | MS.gene055773 | 0.806371 | 8.50E-50 | -1.69E-46 |
MS.gene055773 | MS.gene30530 | 0.810407 | 1.17E-50 | -1.69E-46 |
MS.gene055773 | MS.gene31421 | 0.848767 | 4.97E-60 | -1.69E-46 |
MS.gene055773 | MS.gene31423 | 0.870834 | 1.08E-66 | -1.69E-46 |
MS.gene055773 | MS.gene31879 | 0.857884 | 1.20E-62 | -1.69E-46 |
MS.gene055773 | MS.gene56020 | 0.807919 | 4.00E-50 | -1.69E-46 |
MS.gene055773 | MS.gene72268 | 0.801322 | 9.51E-49 | -1.69E-46 |
MS.gene055773 | MS.gene82929 | 0.812325 | 4.49E-51 | -1.69E-46 |
MS.gene055773 | MS.gene90151 | 0.805772 | 1.14E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055773.t1 | MTR_2g090735 | 99.262 | 271 | 1 | 1 | 1 | 271 | 16 | 285 | 0.0 | 559 |
MS.gene055773.t1 | MTR_4g078875 | 77.818 | 275 | 52 | 4 | 1 | 271 | 15 | 284 | 2.34e-151 | 424 |
MS.gene055773.t1 | MTR_4g088245 | 67.547 | 265 | 75 | 5 | 11 | 270 | 46 | 304 | 1.98e-123 | 354 |
MS.gene055773.t1 | MTR_2g014680 | 61.509 | 265 | 94 | 4 | 12 | 271 | 32 | 293 | 9.59e-114 | 330 |
MS.gene055773.t1 | MTR_8g069160 | 83.240 | 179 | 29 | 1 | 11 | 189 | 46 | 223 | 1.05e-108 | 315 |
MS.gene055773.t1 | MTR_8g102240 | 73.737 | 198 | 40 | 4 | 12 | 202 | 30 | 222 | 1.26e-95 | 290 |
MS.gene055773.t1 | MTR_8g102240 | 73.737 | 198 | 40 | 4 | 12 | 202 | 30 | 222 | 1.30e-95 | 290 |
MS.gene055773.t1 | MTR_5g053430 | 56.633 | 196 | 81 | 2 | 5 | 200 | 32 | 223 | 2.00e-70 | 223 |
MS.gene055773.t1 | MTR_5g053430 | 55.446 | 202 | 86 | 2 | 5 | 206 | 32 | 229 | 2.76e-70 | 223 |
MS.gene055773.t1 | MTR_1g093680 | 57.068 | 191 | 78 | 2 | 10 | 200 | 37 | 223 | 4.07e-70 | 224 |
MS.gene055773.t1 | MTR_7g033320 | 54.595 | 185 | 80 | 2 | 10 | 193 | 34 | 215 | 2.45e-63 | 207 |
MS.gene055773.t1 | MTR_1g093670 | 51.163 | 172 | 69 | 1 | 29 | 200 | 18 | 174 | 1.54e-49 | 167 |
MS.gene055773.t1 | MTR_4g078895 | 81.132 | 53 | 10 | 0 | 23 | 75 | 26 | 78 | 1.49e-24 | 94.0 |
MS.gene055773.t1 | MTR_1g008740 | 31.841 | 201 | 106 | 9 | 34 | 225 | 13 | 191 | 1.17e-15 | 76.3 |
MS.gene055773.t1 | MTR_1g008740 | 31.841 | 201 | 106 | 9 | 34 | 225 | 27 | 205 | 1.33e-15 | 76.3 |
MS.gene055773.t1 | MTR_3g070030 | 33.333 | 168 | 84 | 7 | 34 | 191 | 19 | 168 | 3.54e-14 | 72.0 |
MS.gene055773.t1 | MTR_3g109340 | 31.492 | 181 | 96 | 8 | 19 | 191 | 9 | 169 | 4.55e-14 | 71.6 |
MS.gene055773.t1 | MTR_7g085260 | 32.995 | 197 | 95 | 9 | 34 | 212 | 17 | 194 | 4.84e-14 | 71.6 |
MS.gene055773.t1 | MTR_6g084430 | 32.402 | 179 | 94 | 7 | 33 | 202 | 4 | 164 | 4.98e-14 | 71.2 |
MS.gene055773.t1 | MTR_3g435150 | 32.787 | 183 | 94 | 8 | 34 | 205 | 16 | 180 | 3.16e-13 | 68.6 |
MS.gene055773.t1 | MTR_7g011120 | 29.348 | 184 | 97 | 6 | 34 | 203 | 8 | 172 | 6.90e-13 | 67.8 |
MS.gene055773.t1 | MTR_4g108760 | 31.579 | 171 | 88 | 7 | 34 | 194 | 17 | 168 | 9.55e-13 | 67.8 |
MS.gene055773.t1 | MTR_2g014700 | 65.116 | 43 | 15 | 0 | 99 | 141 | 44 | 86 | 9.83e-13 | 63.2 |
MS.gene055773.t1 | MTR_2g080010 | 29.448 | 163 | 95 | 6 | 19 | 178 | 1 | 146 | 6.08e-12 | 65.5 |
MS.gene055773.t1 | MTR_1g069805 | 28.313 | 166 | 96 | 6 | 33 | 193 | 9 | 156 | 3.27e-11 | 62.8 |
MS.gene055773.t1 | MTR_3g096920 | 33.562 | 146 | 75 | 7 | 34 | 176 | 7 | 133 | 4.93e-11 | 62.4 |
MS.gene055773.t1 | MTR_3g096920 | 33.562 | 146 | 75 | 7 | 34 | 176 | 7 | 133 | 5.66e-11 | 62.4 |
MS.gene055773.t1 | MTR_8g094580 | 32.192 | 146 | 77 | 6 | 34 | 176 | 7 | 133 | 6.62e-11 | 62.0 |
MS.gene055773.t1 | MTR_3g088110 | 32.639 | 144 | 79 | 6 | 34 | 176 | 7 | 133 | 7.72e-11 | 61.6 |
MS.gene055773.t1 | MTR_2g078700 | 30.952 | 168 | 89 | 7 | 34 | 191 | 23 | 173 | 9.98e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055773.t1 | AT4G28500 | 79.104 | 201 | 40 | 2 | 10 | 209 | 36 | 235 | 1.29e-116 | 337 |
MS.gene055773.t1 | AT1G28470 | 76.289 | 194 | 44 | 1 | 9 | 200 | 50 | 243 | 1.86e-105 | 309 |
MS.gene055773.t1 | AT4G29230 | 71.144 | 201 | 45 | 2 | 10 | 202 | 29 | 224 | 1.81e-97 | 293 |
MS.gene055773.t1 | AT4G29230 | 71.144 | 201 | 45 | 2 | 10 | 202 | 29 | 224 | 9.28e-97 | 293 |
MS.gene055773.t1 | AT4G29230 | 71.144 | 201 | 44 | 2 | 10 | 202 | 29 | 223 | 1.84e-96 | 292 |
MS.gene055773.t1 | AT5G56620 | 68.342 | 199 | 48 | 4 | 12 | 199 | 25 | 219 | 1.74e-90 | 274 |
MS.gene055773.t1 | AT5G56620 | 68.342 | 199 | 48 | 4 | 12 | 199 | 25 | 219 | 2.08e-90 | 273 |
MS.gene055773.t1 | AT5G56620 | 68.342 | 199 | 48 | 4 | 12 | 199 | 25 | 219 | 2.97e-90 | 273 |
MS.gene055773.t1 | AT1G25580 | 57.143 | 189 | 71 | 4 | 10 | 198 | 37 | 215 | 1.64e-65 | 211 |
MS.gene055773.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 15 | 198 | 30 | 218 | 6.44e-55 | 179 |
MS.gene055773.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 15 | 198 | 30 | 218 | 1.17e-54 | 180 |
MS.gene055773.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 15 | 198 | 33 | 221 | 1.26e-54 | 180 |
MS.gene055773.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 15 | 198 | 33 | 221 | 1.67e-54 | 180 |
MS.gene055773.t1 | AT3G01600 | 51.064 | 188 | 84 | 3 | 15 | 195 | 30 | 216 | 7.49e-54 | 179 |
MS.gene055773.t1 | AT3G04060 | 32.961 | 179 | 96 | 6 | 26 | 196 | 12 | 174 | 1.43e-15 | 75.9 |
MS.gene055773.t1 | AT5G18270 | 34.637 | 179 | 91 | 7 | 27 | 196 | 14 | 175 | 2.08e-15 | 75.5 |
MS.gene055773.t1 | AT5G18270 | 34.637 | 179 | 91 | 7 | 27 | 196 | 14 | 175 | 3.46e-15 | 74.7 |
MS.gene055773.t1 | AT3G18400 | 34.337 | 166 | 83 | 8 | 33 | 191 | 4 | 150 | 2.62e-14 | 72.0 |
MS.gene055773.t1 | AT3G29035 | 32.941 | 170 | 83 | 8 | 34 | 192 | 24 | 173 | 2.42e-13 | 69.3 |
MS.gene055773.t1 | AT5G07680 | 32.143 | 168 | 91 | 5 | 34 | 194 | 3 | 154 | 2.96e-13 | 68.9 |
MS.gene055773.t1 | AT5G07680 | 32.143 | 168 | 91 | 5 | 34 | 194 | 17 | 168 | 3.12e-13 | 68.9 |
MS.gene055773.t1 | AT5G39610 | 33.929 | 168 | 82 | 7 | 34 | 191 | 20 | 168 | 4.57e-13 | 68.2 |
MS.gene055773.t1 | AT5G61430 | 32.530 | 166 | 87 | 6 | 34 | 191 | 16 | 164 | 7.50e-13 | 67.8 |
MS.gene055773.t1 | AT1G01720 | 31.333 | 150 | 85 | 5 | 28 | 176 | 1 | 133 | 1.22e-12 | 67.0 |
MS.gene055773.t1 | AT5G08790 | 32.877 | 146 | 76 | 6 | 34 | 176 | 7 | 133 | 1.19e-11 | 63.9 |
MS.gene055773.t1 | AT1G02230 | 32.877 | 146 | 73 | 7 | 35 | 173 | 4 | 131 | 1.31e-11 | 64.3 |
MS.gene055773.t1 | AT1G76420 | 31.844 | 179 | 92 | 9 | 33 | 201 | 21 | 179 | 1.97e-11 | 63.9 |
MS.gene055773.t1 | AT4G35580 | 29.082 | 196 | 106 | 10 | 27 | 211 | 2 | 175 | 3.71e-11 | 63.5 |
MS.gene055773.t1 | AT4G35580 | 29.082 | 196 | 106 | 10 | 27 | 211 | 2 | 175 | 4.07e-11 | 63.5 |
MS.gene055773.t1 | AT4G35580 | 29.082 | 196 | 106 | 10 | 27 | 211 | 2 | 175 | 4.14e-11 | 63.2 |
MS.gene055773.t1 | AT1G33060 | 29.268 | 164 | 89 | 8 | 27 | 183 | 17 | 160 | 5.83e-11 | 63.2 |
MS.gene055773.t1 | AT1G33060 | 29.268 | 164 | 89 | 8 | 27 | 183 | 17 | 160 | 5.98e-11 | 62.8 |
Find 51 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTTGCCACTCACGAAAAC+TGG | 0.294833 | 2.1:+10199103 | None:intergenic |
TCAAGAGATTCTTGAACATT+TGG | 0.312906 | 2.1:-10199531 | MS.gene055773:CDS |
GAAAGCCAGAGAAAACAAAT+TGG | 0.314159 | 2.1:-10199030 | MS.gene055773:CDS |
CACATTGTCTAGGCTGTGTT+TGG | 0.340883 | 2.1:+10198933 | None:intergenic |
AGAGGAGAAAGAAGGAGAAT+TGG | 0.354646 | 2.1:-10198975 | MS.gene055773:CDS |
TTCGTGAGTGGCAAGTTAAA+AGG | 0.360040 | 2.1:-10199097 | MS.gene055773:CDS |
AATTGACCTGGTAACTTCTC+TGG | 0.367159 | 2.1:+10199413 | None:intergenic |
CATTATTTCCAAGATGGTAT+TGG | 0.373788 | 2.1:+10198999 | None:intergenic |
GAGTTACCTGGATTACCTGC+TGG | 0.403541 | 2.1:-10199575 | MS.gene055773:CDS |
GGGATGAACTCGTCAATTAA+AGG | 0.418631 | 2.1:+10199473 | None:intergenic |
TATGCAGGTGTCGGCAAAGA+TGG | 0.429616 | 2.1:-10199250 | MS.gene055773:intron |
CCTCTTCATTATTTCCAAGA+TGG | 0.434430 | 2.1:+10198993 | None:intergenic |
GAGACAAGATGGCATAAAAC+AGG | 0.437609 | 2.1:-10199136 | MS.gene055773:CDS |
CTGTGTTTGGTAGAAAACTT+TGG | 0.443831 | 2.1:+10198946 | None:intergenic |
CCTACTCTTGAAGGAGAGAA+TGG | 0.452976 | 2.1:-10199452 | MS.gene055773:CDS |
GAGTTCATCCCTACTCTTGA+AGG | 0.467056 | 2.1:-10199461 | MS.gene055773:CDS |
AGAGATTCTTGAACATTTGG+AGG | 0.472757 | 2.1:-10199528 | MS.gene055773:CDS |
CCATCGAAAGCATACACAAC+AGG | 0.476509 | 2.1:-10199202 | MS.gene055773:CDS |
TTCACCCCAGCAGGTAATCC+AGG | 0.479471 | 2.1:+10199569 | None:intergenic |
CCATTCTCTCCTTCAAGAGT+AGG | 0.481831 | 2.1:+10199452 | None:intergenic |
GGATCAAACTTCACCCCAGC+AGG | 0.493343 | 2.1:+10199560 | None:intergenic |
GTTATGCACCAATACCATCT+TGG | 0.493624 | 2.1:-10199007 | MS.gene055773:CDS |
CATTCTCTCCTTCAAGAGTA+GGG | 0.494352 | 2.1:+10199453 | None:intergenic |
TGATCCGACATTTCTTTCAC+AGG | 0.495756 | 2.1:-10199225 | MS.gene055773:CDS |
AGTTACCTGGATTACCTGCT+GGG | 0.500946 | 2.1:-10199574 | MS.gene055773:CDS |
TCATATCAAATGCCAAGATC+AGG | 0.502996 | 2.1:-10199832 | MS.gene055773:intron |
AAAGCCAGAGAAAACAAATT+GGG | 0.504516 | 2.1:-10199029 | MS.gene055773:CDS |
GAATGTGAAGAACCTGATCT+TGG | 0.505797 | 2.1:+10199820 | None:intergenic |
GTTAATGAATTATAGGGTGC+TGG | 0.506242 | 2.1:-10199605 | MS.gene055773:intron |
CCTGTTGTGTATGCTTTCGA+TGG | 0.507588 | 2.1:+10199202 | None:intergenic |
AATAATGAAGAGGAGAAAGA+AGG | 0.526318 | 2.1:-10198983 | MS.gene055773:CDS |
TCAAGAATCTCTTGATCAGT+AGG | 0.542994 | 2.1:+10199539 | None:intergenic |
GCTGGAATTCATGAGTTACC+TGG | 0.547070 | 2.1:-10199587 | MS.gene055773:CDS |
CAGATGGAAGTGAGACAAGA+TGG | 0.555906 | 2.1:-10199147 | MS.gene055773:CDS |
AAAGATGTACCATCATGGAC+AGG | 0.570055 | 2.1:+10198725 | None:intergenic |
GAATGAAAGATGTACCATCA+TGG | 0.578897 | 2.1:+10198720 | None:intergenic |
ACTCATCCAGAGAAGTTACC+AGG | 0.581252 | 2.1:-10199419 | MS.gene055773:intron |
TTGATATGATGACCACATGT+AGG | 0.596208 | 2.1:+10199846 | None:intergenic |
AATGAACCACCACATTGTCT+AGG | 0.596526 | 2.1:+10198923 | None:intergenic |
TGTAGTTAGTGTAAAGCACA+AGG | 0.598633 | 2.1:+10199062 | None:intergenic |
ATGGCCTGTGAAAGAAATGT+CGG | 0.608865 | 2.1:+10199221 | None:intergenic |
AACATTTGGAGGCAAAAGTG+AGG | 0.622163 | 2.1:-10199517 | MS.gene055773:CDS |
CCATCTTGGAAATAATGAAG+AGG | 0.636615 | 2.1:-10198993 | MS.gene055773:CDS |
ATCAGAACTTGTCCTACATG+TGG | 0.643015 | 2.1:-10199858 | MS.gene055773:CDS |
AAAGTGCACACAGATGCAGA+TGG | 0.660294 | 2.1:-10199163 | MS.gene055773:CDS |
GGCATAAAACAGGTAAAACA+AGG | 0.665333 | 2.1:-10199126 | MS.gene055773:CDS |
CAAACACAGCCTAGACAATG+TGG | 0.666262 | 2.1:-10198932 | MS.gene055773:CDS |
ACACAGCCTAGACAATGTGG+TGG | 0.735435 | 2.1:-10198929 | MS.gene055773:CDS |
TCAAGGTGTGAATCATGAGG+TGG | 0.742861 | 2.1:-10198855 | MS.gene055773:CDS |
TGATCAAGGTGTGAATCATG+AGG | 0.746754 | 2.1:-10198858 | MS.gene055773:CDS |
GTTACCTGGATTACCTGCTG+GGG | 0.752999 | 2.1:-10199573 | MS.gene055773:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACTAATAATATAAATATTG+TGG | - | chr2.1:10198968-10198987 | MS.gene055773:CDS | 10.0% |
!!! | ATGATATTATTATTTTTCTT+TGG | - | chr2.1:10198912-10198931 | MS.gene055773:CDS | 10.0% |
!! | ATAAGGCATATATATATATT+TGG | + | chr2.1:10199217-10199236 | None:intergenic | 15.0% |
!!! | TTTTCTGATAAAAAACTAAA+TGG | - | chr2.1:10199716-10199735 | MS.gene055773:intron | 15.0% |
!! | CACAAAAAATGTCATTATAT+AGG | + | chr2.1:10199302-10199321 | None:intergenic | 20.0% |
!! | CTATGAAAGAATAAAAGAAA+TGG | + | chr2.1:10199250-10199269 | None:intergenic | 20.0% |
!! | GAAATGGAAAGTAAATTATA+AGG | + | chr2.1:10199234-10199253 | None:intergenic | 20.0% |
!!! | TTAAAGCTTTAACAAAATCA+CGG | + | chr2.1:10198848-10198867 | None:intergenic | 20.0% |
! | AAAAAACTAAATGGTGATCA+AGG | - | chr2.1:10199725-10199744 | MS.gene055773:intron | 25.0% |
! | AGGCATATATATATATTTGG+TGG | + | chr2.1:10199214-10199233 | None:intergenic | 25.0% |
!! | ATATTTTACGTCTAATATGC+AGG | - | chr2.1:10199332-10199351 | MS.gene055773:intron | 25.0% |
!! | TCTTTCATATCTTTTGATCA+AGG | - | chr2.1:10199806-10199825 | MS.gene055773:intron | 25.0% |
!! | TGTGGTGTTAATGAATTATA+GGG | - | chr2.1:10198986-10199005 | MS.gene055773:CDS | 25.0% |
!! | TTGTGGTGTTAATGAATTAT+AGG | - | chr2.1:10198985-10199004 | MS.gene055773:CDS | 25.0% |
!!! | TGGTGATGTTAATGATTTTA+TGG | - | chr2.1:10198932-10198951 | MS.gene055773:CDS | 25.0% |
AAAGCCAGAGAAAACAAATT+GGG | - | chr2.1:10199568-10199587 | MS.gene055773:CDS | 30.0% | |
AATAATGAAGAGGAGAAAGA+AGG | - | chr2.1:10199614-10199633 | MS.gene055773:intron | 30.0% | |
CATTATTTCCAAGATGGTAT+TGG | + | chr2.1:10199601-10199620 | None:intergenic | 30.0% | |
GTGGTTAATCATAAAAACAG+TGG | - | chr2.1:10199761-10199780 | MS.gene055773:intron | 30.0% | |
TCAAGAGATTCTTGAACATT+TGG | - | chr2.1:10199066-10199085 | MS.gene055773:CDS | 30.0% | |
!! | ATAACCCAATTTGTTTTCTC+TGG | + | chr2.1:10199575-10199594 | None:intergenic | 30.0% |
AGAGATTCTTGAACATTTGG+AGG | - | chr2.1:10199069-10199088 | MS.gene055773:CDS | 35.0% | |
CCATCTTGGAAATAATGAAG+AGG | - | chr2.1:10199604-10199623 | MS.gene055773:intron | 35.0% | |
CCTCTTCATTATTTCCAAGA+TGG | + | chr2.1:10199607-10199626 | None:intergenic | 35.0% | |
CTGTGTTTGGTAGAAAACTT+TGG | + | chr2.1:10199654-10199673 | None:intergenic | 35.0% | |
CTTTAACAAAATCACGGTGT+CGG | + | chr2.1:10198842-10198861 | None:intergenic | 35.0% | |
GAAAGCCAGAGAAAACAAAT+TGG | - | chr2.1:10199567-10199586 | MS.gene055773:CDS | 35.0% | |
GAATGAAAGATGTACCATCA+TGG | + | chr2.1:10199880-10199899 | None:intergenic | 35.0% | |
GGCATAAAACAGGTAAAACA+AGG | - | chr2.1:10199471-10199490 | MS.gene055773:CDS | 35.0% | |
GTTAATGAATTATAGGGTGC+TGG | - | chr2.1:10198992-10199011 | MS.gene055773:CDS | 35.0% | |
TCAAGAATCTCTTGATCAGT+AGG | + | chr2.1:10199061-10199080 | None:intergenic | 35.0% | |
TCATATCAAATGCCAAGATC+AGG | - | chr2.1:10198765-10198784 | MS.gene055773:CDS | 35.0% | |
TGTAGTTAGTGTAAAGCACA+AGG | + | chr2.1:10199538-10199557 | None:intergenic | 35.0% | |
TTGATATGATGACCACATGT+AGG | + | chr2.1:10198754-10198773 | None:intergenic | 35.0% | |
AAAGATGTACCATCATGGAC+AGG | + | chr2.1:10199875-10199894 | None:intergenic | 40.0% | |
AACATTTGGAGGCAAAAGTG+AGG | - | chr2.1:10199080-10199099 | MS.gene055773:CDS | 40.0% | |
AATGAACCACCACATTGTCT+AGG | + | chr2.1:10199677-10199696 | None:intergenic | 40.0% | |
AATTGACCTGGTAACTTCTC+TGG | + | chr2.1:10199187-10199206 | None:intergenic | 40.0% | |
AGAGGAGAAAGAAGGAGAAT+TGG | - | chr2.1:10199622-10199641 | MS.gene055773:intron | 40.0% | |
ATCAGAACTTGTCCTACATG+TGG | - | chr2.1:10198739-10198758 | MS.gene055773:CDS | 40.0% | |
ATGGCCTGTGAAAGAAATGT+CGG | + | chr2.1:10199379-10199398 | None:intergenic | 40.0% | |
CATTCTCTCCTTCAAGAGTA+GGG | + | chr2.1:10199147-10199166 | None:intergenic | 40.0% | |
GAATGTGAAGAACCTGATCT+TGG | + | chr2.1:10198780-10198799 | None:intergenic | 40.0% | |
GAGACAAGATGGCATAAAAC+AGG | - | chr2.1:10199461-10199480 | MS.gene055773:CDS | 40.0% | |
GGGATGAACTCGTCAATTAA+AGG | + | chr2.1:10199127-10199146 | None:intergenic | 40.0% | |
GTTATGCACCAATACCATCT+TGG | - | chr2.1:10199590-10199609 | MS.gene055773:CDS | 40.0% | |
TACGTCTAATATGCAGGTGT+CGG | - | chr2.1:10199338-10199357 | MS.gene055773:intron | 40.0% | |
TGATCAAGGTGTGAATCATG+AGG | - | chr2.1:10199739-10199758 | MS.gene055773:intron | 40.0% | |
TGATCCGACATTTCTTTCAC+AGG | - | chr2.1:10199372-10199391 | MS.gene055773:intron | 40.0% | |
TTCGTGAGTGGCAAGTTAAA+AGG | - | chr2.1:10199500-10199519 | MS.gene055773:CDS | 40.0% | |
! | GTTGTGTGTCATCGTGATTT+TGG | + | chr2.1:10198884-10198903 | None:intergenic | 40.0% |
! | TCTCATTTTCCTGTCCATGA+TGG | - | chr2.1:10199863-10199882 | MS.gene055773:CDS | 40.0% |
! | TTTGGTGGCTTAAATTGACC+TGG | + | chr2.1:10199199-10199218 | None:intergenic | 40.0% |
AAAGTGCACACAGATGCAGA+TGG | - | chr2.1:10199434-10199453 | MS.gene055773:CDS | 45.0% | |
AACTTGCCACTCACGAAAAC+TGG | + | chr2.1:10199497-10199516 | None:intergenic | 45.0% | |
ACTCATCCAGAGAAGTTACC+AGG | - | chr2.1:10199178-10199197 | MS.gene055773:CDS | 45.0% | |
AGGTTCTTCACATTCGTGCA+TGG | - | chr2.1:10198785-10198804 | MS.gene055773:CDS | 45.0% | |
AGTTACCTGGATTACCTGCT+GGG | - | chr2.1:10199023-10199042 | MS.gene055773:CDS | 45.0% | |
CAAACACAGCCTAGACAATG+TGG | - | chr2.1:10199665-10199684 | MS.gene055773:intron | 45.0% | |
CACATTGTCTAGGCTGTGTT+TGG | + | chr2.1:10199667-10199686 | None:intergenic | 45.0% | |
CAGATGGAAGTGAGACAAGA+TGG | - | chr2.1:10199450-10199469 | MS.gene055773:CDS | 45.0% | |
CCATTCTCTCCTTCAAGAGT+AGG | + | chr2.1:10199148-10199167 | None:intergenic | 45.0% | |
CCTACTCTTGAAGGAGAGAA+TGG | - | chr2.1:10199145-10199164 | MS.gene055773:CDS | 45.0% | |
CCTGTTGTGTATGCTTTCGA+TGG | + | chr2.1:10199398-10199417 | None:intergenic | 45.0% | |
GAGTTCATCCCTACTCTTGA+AGG | - | chr2.1:10199136-10199155 | MS.gene055773:CDS | 45.0% | |
GCTGGAATTCATGAGTTACC+TGG | - | chr2.1:10199010-10199029 | MS.gene055773:CDS | 45.0% | |
TCAAGGTGTGAATCATGAGG+TGG | - | chr2.1:10199742-10199761 | MS.gene055773:intron | 45.0% | |
! | CCATCGAAAGCATACACAAC+AGG | - | chr2.1:10199395-10199414 | MS.gene055773:intron | 45.0% |
ACACAGCCTAGACAATGTGG+TGG | - | chr2.1:10199668-10199687 | MS.gene055773:intron | 50.0% | |
GAGTTACCTGGATTACCTGC+TGG | - | chr2.1:10199022-10199041 | MS.gene055773:CDS | 50.0% | |
GTTACCTGGATTACCTGCTG+GGG | - | chr2.1:10199024-10199043 | MS.gene055773:CDS | 50.0% | |
! | ACAAGGCCAGTTTTCGTGAG+TGG | - | chr2.1:10199488-10199507 | MS.gene055773:CDS | 50.0% |
!! | TATGCAGGTGTCGGCAAAGA+TGG | - | chr2.1:10199347-10199366 | MS.gene055773:intron | 50.0% |
GGATCAAACTTCACCCCAGC+AGG | + | chr2.1:10199040-10199059 | None:intergenic | 55.0% | |
TTCACCCCAGCAGGTAATCC+AGG | + | chr2.1:10199031-10199050 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 10198715 | 10199904 | 10198715 | ID=MS.gene055773 |
chr2.1 | mRNA | 10198715 | 10199904 | 10198715 | ID=MS.gene055773.t1;Parent=MS.gene055773 |
chr2.1 | exon | 10199833 | 10199904 | 10199833 | ID=MS.gene055773.t1.exon1;Parent=MS.gene055773.t1 |
chr2.1 | CDS | 10199833 | 10199904 | 10199833 | ID=cds.MS.gene055773.t1;Parent=MS.gene055773.t1 |
chr2.1 | exon | 10199420 | 10199612 | 10199420 | ID=MS.gene055773.t1.exon2;Parent=MS.gene055773.t1 |
chr2.1 | CDS | 10199420 | 10199612 | 10199420 | ID=cds.MS.gene055773.t1;Parent=MS.gene055773.t1 |
chr2.1 | exon | 10198715 | 10199265 | 10198715 | ID=MS.gene055773.t1.exon3;Parent=MS.gene055773.t1 |
chr2.1 | CDS | 10198715 | 10199265 | 10198715 | ID=cds.MS.gene055773.t1;Parent=MS.gene055773.t1 |
Gene Sequence |
Protein sequence |