Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31627.t1 | XP_003588525.2 | 97 | 296 | 8 | 1 | 1 | 296 | 1 | 295 | 1.70E-116 | 429.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31627.t1 | Q9LV09 | 63.2 | 310 | 94 | 3 | 1 | 296 | 1 | 304 | 4.1e-79 | 296.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31627.t1 | G7I4A8 | 97.0 | 296 | 8 | 1 | 1 | 296 | 1 | 295 | 1.2e-116 | 429.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054413 | MS.gene31627 | 0.804374 | 2.23E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene31627 | 0.815254 | 1.02E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31627.t1 | MTR_1g008200 | 96.622 | 296 | 9 | 1 | 1 | 296 | 1 | 295 | 0.0 | 582 |
| MS.gene31627.t1 | MTR_1g008195 | 82.492 | 297 | 44 | 3 | 1 | 296 | 1 | 290 | 1.86e-156 | 438 |
| MS.gene31627.t1 | MTR_1g008170 | 79.264 | 299 | 48 | 3 | 1 | 295 | 1 | 289 | 5.22e-153 | 429 |
| MS.gene31627.t1 | MTR_6g065550 | 74.603 | 126 | 20 | 3 | 10 | 134 | 50 | 164 | 5.69e-36 | 127 |
| MS.gene31627.t1 | MTR_3g463620 | 30.097 | 103 | 71 | 1 | 139 | 241 | 49 | 150 | 9.78e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31627.t1 | AT5G53400 | 59.930 | 287 | 99 | 2 | 25 | 296 | 19 | 304 | 1.40e-116 | 338 |
| MS.gene31627.t1 | AT4G27890 | 56.250 | 304 | 114 | 6 | 1 | 296 | 1 | 293 | 1.49e-109 | 319 |
| MS.gene31627.t1 | AT5G58740 | 25.949 | 158 | 81 | 3 | 139 | 296 | 21 | 142 | 8.94e-14 | 68.2 |
Find 74 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCATGATTTCCTGTTTC+TGG | 0.058297 | 1.1:+11251956 | None:intergenic |
| TAAAAGCTTACATCAATAAT+TGG | 0.250303 | 1.1:+11252885 | None:intergenic |
| ATGAGGTTTGGGTTTCTTCT+TGG | 0.317575 | 1.1:+11254500 | None:intergenic |
| TGATCAGAGGCAGAAGTCTA+TGG | 0.321181 | 1.1:-11252001 | MS.gene31627:CDS |
| TTCTGGAGCTCCTCACTTGT+TGG | 0.356328 | 1.1:+11251973 | None:intergenic |
| TTGGGTTTCTTCTTGGTAAT+CGG | 0.361888 | 1.1:+11254507 | None:intergenic |
| TCAAGCCTGATGAATGTTAC+TGG | 0.367377 | 1.1:-11252676 | MS.gene31627:CDS |
| ATCCATACCATTACCCTGAT+TGG | 0.375160 | 1.1:+11253043 | None:intergenic |
| AACAGCAATCTTAGCTTTCT+CGG | 0.384320 | 1.1:+11254279 | None:intergenic |
| TTTGAGAAGAAGATGAGGTT+TGG | 0.388546 | 1.1:+11254488 | None:intergenic |
| TTGATGGACAGTTCCCAATC+AGG | 0.395904 | 1.1:-11253057 | MS.gene31627:intron |
| TCAACAGTCTGTCGAGTCTC+AGG | 0.400798 | 1.1:+11252335 | None:intergenic |
| TCACCAAGTTTGCTGCTCTC+AGG | 0.401717 | 1.1:+11252365 | None:intergenic |
| AGAAAAGCGGTTGGATTTGA+AGG | 0.414688 | 1.1:+11254424 | None:intergenic |
| TGGATCTGGAGAAATATTCT+TGG | 0.418168 | 1.1:-11253025 | MS.gene31627:CDS |
| CATGAAGAAATTTATGAGTC+AGG | 0.419859 | 1.1:-11251941 | MS.gene31627:intron |
| CGATTTCTTCGATAATGATT+CGG | 0.421929 | 1.1:-11254365 | MS.gene31627:CDS |
| TTGAGAAGAAGATGAGGTTT+GGG | 0.427139 | 1.1:+11254489 | None:intergenic |
| TTTAACCAAGCATGATCAAA+TGG | 0.428418 | 1.1:-11252444 | MS.gene31627:CDS |
| AAGTGAGGAGCTCCAGAAAC+AGG | 0.431963 | 1.1:-11251968 | MS.gene31627:CDS |
| TGAGAAGGAAGATGAGAAGA+CGG | 0.436290 | 1.1:-11254185 | MS.gene31627:CDS |
| CATCTAAAAGTTGGAATCAA+AGG | 0.443557 | 1.1:-11252915 | MS.gene31627:CDS |
| GAACCTGAGAGCAGCAAACT+TGG | 0.444776 | 1.1:-11252368 | MS.gene31627:CDS |
| CCAGTCCATTTGATCATGCT+TGG | 0.448786 | 1.1:+11252439 | None:intergenic |
| AAGAAGAACCATCTAAAAGT+TGG | 0.449134 | 1.1:-11252924 | MS.gene31627:CDS |
| GATGGAGAAAGTGGCTTAGC+AGG | 0.450109 | 1.1:-11254163 | MS.gene31627:intron |
| AGCTATGGAGGTAGATGAGA+AGG | 0.453896 | 1.1:-11254200 | MS.gene31627:CDS |
| CGAATCATTATCGAAGAAAT+CGG | 0.453970 | 1.1:+11254366 | None:intergenic |
| TCAGGGTAATGGTATGGATC+TGG | 0.458750 | 1.1:-11253039 | MS.gene31627:CDS |
| GGCGGCTGCTGTTGCTGCGG+CGG | 0.461162 | 1.1:-11254230 | MS.gene31627:CDS |
| AAGGTGGAAGAGAACGGAAT+AGG | 0.487694 | 1.1:+11254451 | None:intergenic |
| TCCATACCATTACCCTGATT+GGG | 0.488514 | 1.1:+11253044 | None:intergenic |
| ATGCTCCAGTAACATTCATC+AGG | 0.490196 | 1.1:+11252671 | None:intergenic |
| ATCTAAAAGTTGGAATCAAA+GGG | 0.502699 | 1.1:-11252914 | MS.gene31627:CDS |
| CGATAATGATTCGGCTGAGA+AGG | 0.502712 | 1.1:-11254356 | MS.gene31627:CDS |
| GGAGCTCCTCACTTGTTGGA+AGG | 0.509413 | 1.1:+11251977 | None:intergenic |
| AAGGAAGATGAGAAGACGGA+TGG | 0.515138 | 1.1:-11254181 | MS.gene31627:CDS |
| TGGTGGAAATGTCTTGTTAA+GGG | 0.518276 | 1.1:-11252419 | MS.gene31627:CDS |
| TCCCAATCAGGGTAATGGTA+TGG | 0.518546 | 1.1:-11253045 | MS.gene31627:CDS |
| GCATTCGAGAAGTCCATCTC+CGG | 0.524232 | 1.1:+11251813 | None:intergenic |
| AGAGAAGGCGAAGGTTGATA+AGG | 0.527997 | 1.1:-11254254 | MS.gene31627:CDS |
| TGTATTGCAGCATCCGGAGA+TGG | 0.529847 | 1.1:-11251826 | MS.gene31627:intron |
| TCTGTCGAGTCTCAGGATCC+AGG | 0.530996 | 1.1:+11252342 | None:intergenic |
| ATCCGCCGTTCGCGCTGTGA+AGG | 0.537892 | 1.1:-11254326 | MS.gene31627:CDS |
| GAGAAGACGGATGGAGAAAG+TGG | 0.540556 | 1.1:-11254172 | MS.gene31627:CDS |
| GTGAATGTTCCAGTGCCAAA+TGG | 0.540930 | 1.1:-11252978 | MS.gene31627:CDS |
| TGATGGACAGTTCCCAATCA+GGG | 0.541528 | 1.1:-11253056 | MS.gene31627:intron |
| TGCCAAATGGAACAAAATCA+AGG | 0.549463 | 1.1:-11252965 | MS.gene31627:CDS |
| GAGCAGCAAACTTGGTGACC+TGG | 0.549952 | 1.1:-11252360 | MS.gene31627:CDS |
| AAGCTTACATCAATAATTGG+TGG | 0.551582 | 1.1:+11252888 | None:intergenic |
| ACAGTTCCCAATCAGGGTAA+TGG | 0.556894 | 1.1:-11253050 | MS.gene31627:intron |
| GATCAGAGGCAGAAGTCTAT+GGG | 0.558052 | 1.1:-11252000 | MS.gene31627:CDS |
| GATGAATGTTACTGGAGCAT+AGG | 0.561295 | 1.1:-11252668 | MS.gene31627:intron |
| CTGGTGGAAATGTCTTGTTA+AGG | 0.563095 | 1.1:-11252420 | MS.gene31627:CDS |
| GGCGGCGGCTGCTGTTGCTG+CGG | 0.565880 | 1.1:-11254233 | MS.gene31627:CDS |
| TGTATTCGACTTCATCGCTA+AGG | 0.567639 | 1.1:-11254395 | MS.gene31627:CDS |
| TAAGATTGCTGTTGAAGAGA+AGG | 0.574713 | 1.1:-11254269 | MS.gene31627:CDS |
| ACAGACTGTTGAAAAGATGA+TGG | 0.576647 | 1.1:-11252324 | MS.gene31627:intron |
| AGCATGATCAAATGGACTGG+TGG | 0.576780 | 1.1:-11252436 | MS.gene31627:CDS |
| TGGATTTGAAGGATCGAAGG+TGG | 0.582135 | 1.1:+11254435 | None:intergenic |
| TTCTTTAACAGTTTGATCAG+AGG | 0.586849 | 1.1:-11252014 | MS.gene31627:intron |
| TAATGATTCGGCTGAGAAGG+TGG | 0.597727 | 1.1:-11254353 | MS.gene31627:CDS |
| CCAAGCATGATCAAATGGAC+TGG | 0.599013 | 1.1:-11252439 | MS.gene31627:CDS |
| GGCGAAGGTTGATAAGGCGG+CGG | 0.599571 | 1.1:-11254248 | MS.gene31627:CDS |
| TGCTGTTGAAGAGAAGGCGA+AGG | 0.601660 | 1.1:-11254263 | MS.gene31627:CDS |
| GGATCGAAGGTGGAAGAGAA+CGG | 0.602076 | 1.1:+11254445 | None:intergenic |
| GGTTGGATTTGAAGGATCGA+AGG | 0.613022 | 1.1:+11254432 | None:intergenic |
| TACCTTCACAGCGCGAACGG+CGG | 0.622007 | 1.1:+11254324 | None:intergenic |
| CTTTACCTTCACAGCGCGAA+CGG | 0.628341 | 1.1:+11254321 | None:intergenic |
| GAAGGCGAAGGTTGATAAGG+CGG | 0.663476 | 1.1:-11254251 | MS.gene31627:CDS |
| TGTGAAGGTAAAGAAAGCTA+AGG | 0.664999 | 1.1:-11254311 | MS.gene31627:CDS |
| TGCGGCGGAGAAGAAAGCTA+TGG | 0.665095 | 1.1:-11254215 | MS.gene31627:CDS |
| TATGGGCCTTCCAACAAGTG+AGG | 0.673276 | 1.1:-11251983 | MS.gene31627:CDS |
| GGCGGAGAAGAAAGCTATGG+AGG | 0.684045 | 1.1:-11254212 | MS.gene31627:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTTAAAAATATT+GGG | - | chr1.1:11252238-11252257 | MS.gene31627:intron | 0.0% |
| !!! | TTTAATTTTTTTAAAAATAT+TGG | - | chr1.1:11252237-11252256 | MS.gene31627:intron | 0.0% |
| !! | AAAGAAATAAAAAAAAACTA+GGG | + | chr1.1:11252220-11252239 | None:intergenic | 10.0% |
| !! | TAAAGAAATAAAAAAAAACT+AGG | + | chr1.1:11252221-11252240 | None:intergenic | 10.0% |
| !! | AAAAAATTCAGATATATAGT+TGG | + | chr1.1:11253208-11253227 | None:intergenic | 15.0% |
| !! | ATTGTAAATTATCAAAATGA+TGG | - | chr1.1:11253082-11253101 | MS.gene31627:intron | 15.0% |
| !! | TTGATTGTTTATTAAATCTA+TGG | - | chr1.1:11252618-11252637 | MS.gene31627:intron | 15.0% |
| !!! | ATTATTTTAAAATTTCTCAG+GGG | - | chr1.1:11253605-11253624 | MS.gene31627:intron | 15.0% |
| !!! | CATTATTTTAAAATTTCTCA+GGG | - | chr1.1:11253604-11253623 | MS.gene31627:intron | 15.0% |
| !!! | TCATTATTTTAAAATTTCTC+AGG | - | chr1.1:11253603-11253622 | MS.gene31627:intron | 15.0% |
| !!! | TTTTAAACTTGTGAAAATTT+TGG | - | chr1.1:11253755-11253774 | MS.gene31627:intron | 15.0% |
| !! | GAAATTTATGAGATAACAAT+GGG | - | chr1.1:11252308-11252327 | MS.gene31627:intron | 20.0% |
| !! | TAAAAGCTTACATCAATAAT+TGG | + | chr1.1:11253438-11253457 | None:intergenic | 20.0% |
| !! | TGAAATTTATGAGATAACAA+TGG | - | chr1.1:11252307-11252326 | MS.gene31627:intron | 20.0% |
| !! | TTAAAATAATGAATCAGCAA+AGG | + | chr1.1:11253595-11253614 | None:intergenic | 20.0% |
| !! | TTTAACTATTCATTAGCTAA+TGG | - | chr1.1:11253155-11253174 | MS.gene31627:intron | 20.0% |
| !!! | AAATTATCAAAATGATGGAA+TGG | - | chr1.1:11253087-11253106 | MS.gene31627:intron | 20.0% |
| !!! | AGATTTAAATAACACTGTTT+TGG | - | chr1.1:11254240-11254259 | MS.gene31627:CDS | 20.0% |
| !!! | TACTTAATATAACTTGCATT+TGG | - | chr1.1:11254053-11254072 | MS.gene31627:intron | 20.0% |
| !!! | TATGTATCTATTCTTTTGTT+GGG | - | chr1.1:11254124-11254143 | MS.gene31627:intron | 20.0% |
| !!! | TTATTTTAAAATTTCTCAGG+GGG | - | chr1.1:11253606-11253625 | MS.gene31627:intron | 20.0% |
| ! | AGAAGCAATACAAAAATCAA+AGG | + | chr1.1:11254409-11254428 | None:intergenic | 25.0% |
| ! | ATAATCGAATAGAGATAACT+TGG | - | chr1.1:11254185-11254204 | MS.gene31627:CDS | 25.0% |
| ! | ATAATTCATTAGGATCATGA+TGG | - | chr1.1:11253723-11253742 | MS.gene31627:intron | 25.0% |
| ! | ATCAAACTGTTAAAGAATAC+AGG | + | chr1.1:11254303-11254322 | None:intergenic | 25.0% |
| ! | ATCATGATCCTAATGAATTA+TGG | + | chr1.1:11253724-11253743 | None:intergenic | 25.0% |
| ! | ATCTAAAAGTTGGAATCAAA+GGG | - | chr1.1:11253406-11253425 | MS.gene31627:intron | 25.0% |
| ! | ATCTATATCACAAAGACTTT+CGG | - | chr1.1:11252851-11252870 | MS.gene31627:intron | 25.0% |
| ! | GAATTATGGTCACTTAAAAA+GGG | + | chr1.1:11253710-11253729 | None:intergenic | 25.0% |
| ! | GTTTCTATTACCAAAAAATG+TGG | + | chr1.1:11252817-11252836 | None:intergenic | 25.0% |
| ! | TAAATATGCCAAAATTGCTA+GGG | - | chr1.1:11252482-11252501 | MS.gene31627:intron | 25.0% |
| ! | TAGATGATAAACCAATGATA+AGG | - | chr1.1:11252664-11252683 | MS.gene31627:intron | 25.0% |
| ! | TCAAACAAACTAAAAATTCC+AGG | + | chr1.1:11253559-11253578 | None:intergenic | 25.0% |
| ! | TCAAACTGTTAAAGAATACA+GGG | + | chr1.1:11254302-11254321 | None:intergenic | 25.0% |
| ! | TGAATTATGGTCACTTAAAA+AGG | + | chr1.1:11253711-11253730 | None:intergenic | 25.0% |
| ! | TGTATCATATTGTATTGCTA+TGG | - | chr1.1:11252378-11252397 | MS.gene31627:CDS | 25.0% |
| ! | TTAAATATGCCAAAATTGCT+AGG | - | chr1.1:11252481-11252500 | MS.gene31627:intron | 25.0% |
| ! | TTAAGTGACCATAATTCATT+AGG | - | chr1.1:11253713-11253732 | MS.gene31627:intron | 25.0% |
| !! | ACACTCAATGCTTAAAATTT+TGG | + | chr1.1:11252726-11252745 | None:intergenic | 25.0% |
| !! | CACTCAATGCTTAAAATTTT+GGG | + | chr1.1:11252725-11252744 | None:intergenic | 25.0% |
| !! | GTATGTATCTATTCTTTTGT+TGG | - | chr1.1:11254123-11254142 | MS.gene31627:intron | 25.0% |
| !!! | TATGCATATACCACATTTTT+TGG | - | chr1.1:11252804-11252823 | MS.gene31627:intron | 25.0% |
| !!! | TTTAAAACCTATTTTTGCAG+AGG | - | chr1.1:11253831-11253850 | MS.gene31627:intron | 25.0% |
| AAAATGTGGTATATGCATAG+TGG | + | chr1.1:11252803-11252822 | None:intergenic | 30.0% | |
| AAACACAATCAAATCAGAGA+GGG | + | chr1.1:11253038-11253057 | None:intergenic | 30.0% | |
| AAATATGCCAAAATTGCTAG+GGG | - | chr1.1:11252483-11252502 | MS.gene31627:intron | 30.0% | |
| AAGAAGAACCATCTAAAAGT+TGG | - | chr1.1:11253396-11253415 | MS.gene31627:intron | 30.0% | |
| AAGCTTACATCAATAATTGG+TGG | + | chr1.1:11253435-11253454 | None:intergenic | 30.0% | |
| CAAATTTACTAGATCGACAA+AGG | + | chr1.1:11254456-11254475 | None:intergenic | 30.0% | |
| CATCTAAAAGTTGGAATCAA+AGG | - | chr1.1:11253405-11253424 | MS.gene31627:intron | 30.0% | |
| CATGAAGAAATTTATGAGTC+AGG | - | chr1.1:11254379-11254398 | MS.gene31627:CDS | 30.0% | |
| CGAATCATTATCGAAGAAAT+CGG | + | chr1.1:11251957-11251976 | None:intergenic | 30.0% | |
| CGATTTCTTCGATAATGATT+CGG | - | chr1.1:11251955-11251974 | MS.gene31627:CDS | 30.0% | |
| GAAAGTCTTTGTGATATAGA+TGG | + | chr1.1:11252852-11252871 | None:intergenic | 30.0% | |
| GATACATACTTAAATGCAAC+AGG | + | chr1.1:11254112-11254131 | None:intergenic | 30.0% | |
| GATGAAATGACAATAATCAC+CGG | + | chr1.1:11252540-11252559 | None:intergenic | 30.0% | |
| TTCTTTAACAGTTTGATCAG+AGG | - | chr1.1:11254306-11254325 | MS.gene31627:CDS | 30.0% | |
| TTTAACCAAGCATGATCAAA+TGG | - | chr1.1:11253876-11253895 | MS.gene31627:intron | 30.0% | |
| ! | AACCTTGATTTTGTTCCATT+TGG | + | chr1.1:11253360-11253379 | None:intergenic | 30.0% |
| ! | AAGATGACATTCTAGTTGAA+TGG | - | chr1.1:11254159-11254178 | MS.gene31627:intron | 30.0% |
| ! | ATTTTATGTATTGCAGCATC+CGG | - | chr1.1:11254488-11254507 | MS.gene31627:CDS | 30.0% |
| ! | CTTTGATTCCAACTTTTAGA+TGG | + | chr1.1:11253407-11253426 | None:intergenic | 30.0% |
| ! | TACATCTTTGCTCTTTTTGA+TGG | - | chr1.1:11253247-11253266 | MS.gene31627:intron | 30.0% |
| ! | TTTGCTATGAACATTGTGTT+GGG | - | chr1.1:11252278-11252297 | MS.gene31627:intron | 30.0% |
| ! | TTTGTGATATAGATGGACTT+AGG | + | chr1.1:11252845-11252864 | None:intergenic | 30.0% |
| !! | ATAACACTGTTTTGGATTTG+AGG | - | chr1.1:11254248-11254267 | MS.gene31627:CDS | 30.0% |
| !! | GAATACATTTTCGAGAAAAG+CGG | + | chr1.1:11251912-11251931 | None:intergenic | 30.0% |
| !! | GCAATTTTGGCATATTTAAC+CGG | + | chr1.1:11252480-11252499 | None:intergenic | 30.0% |
| !! | TTTTGTTTGAGAAGAAGATG+AGG | + | chr1.1:11251840-11251859 | None:intergenic | 30.0% |
| !!! | ACTTTTTGGGTGTTAATTTC+AGG | + | chr1.1:11253931-11253950 | None:intergenic | 30.0% |
| ACAGACTGTTGAAAAGATGA+TGG | - | chr1.1:11253996-11254015 | MS.gene31627:intron | 35.0% | |
| AGAGTCTTCTGATTGTAACT+AGG | - | chr1.1:11253781-11253800 | MS.gene31627:intron | 35.0% | |
| ATAACACAAACAAGTGTCAC+TGG | + | chr1.1:11253498-11253517 | None:intergenic | 35.0% | |
| CAAACACAATCAAATCAGAG+AGG | + | chr1.1:11253039-11253058 | None:intergenic | 35.0% | |
| CAACAGTAACTGCTATAACT+TGG | + | chr1.1:11253461-11253480 | None:intergenic | 35.0% | |
| TCTTCATGATTTCCTGTTTC+TGG | + | chr1.1:11254367-11254386 | None:intergenic | 35.0% | |
| TGCCAAATGGAACAAAATCA+AGG | - | chr1.1:11253355-11253374 | MS.gene31627:intron | 35.0% | |
| TGGATCTGGAGAAATATTCT+TGG | - | chr1.1:11253295-11253314 | MS.gene31627:intron | 35.0% | |
| TGTGAAGGTAAAGAAAGCTA+AGG | - | chr1.1:11252009-11252028 | MS.gene31627:intron | 35.0% | |
| TTGAGAAGAAGATGAGGTTT+GGG | + | chr1.1:11251834-11251853 | None:intergenic | 35.0% | |
| TTTGAGAAGAAGATGAGGTT+TGG | + | chr1.1:11251835-11251854 | None:intergenic | 35.0% | |
| ! | AACAGCAATCTTAGCTTTCT+CGG | + | chr1.1:11252044-11252063 | None:intergenic | 35.0% |
| ! | CTCTCTGATTTGATTGTGTT+TGG | - | chr1.1:11253037-11253056 | MS.gene31627:CDS | 35.0% |
| ! | GTTTAAACCCCTAGCAATTT+TGG | + | chr1.1:11252493-11252512 | None:intergenic | 35.0% |
| ! | TAAGATTGCTGTTGAAGAGA+AGG | - | chr1.1:11252051-11252070 | MS.gene31627:intron | 35.0% |
| ! | TGGTGGAAATGTCTTGTTAA+GGG | - | chr1.1:11253901-11253920 | MS.gene31627:intron | 35.0% |
| ! | TTGGGTTTCTTCTTGGTAAT+CGG | + | chr1.1:11251816-11251835 | None:intergenic | 35.0% |
| !! | GTTTGCTATGAACATTGTGT+TGG | - | chr1.1:11252277-11252296 | MS.gene31627:intron | 35.0% |
| AATTCCAGGCTAAAGACAGA+AGG | + | chr1.1:11253545-11253564 | None:intergenic | 40.0% | |
| AGAAAAGCGGTTGGATTTGA+AGG | + | chr1.1:11251899-11251918 | None:intergenic | 40.0% | |
| ATCCATACCATTACCCTGAT+TGG | + | chr1.1:11253280-11253299 | None:intergenic | 40.0% | |
| ATCCATAGTTTGGACTGACA+GGG | + | chr1.1:11252911-11252930 | None:intergenic | 40.0% | |
| ATGCTCCAGTAACATTCATC+AGG | + | chr1.1:11253652-11253671 | None:intergenic | 40.0% | |
| ATGGATCTGGTACCATATCT+TGG | - | chr1.1:11252925-11252944 | MS.gene31627:CDS | 40.0% | |
| ATGGTACCAGATCCATAGTT+TGG | + | chr1.1:11252921-11252940 | None:intergenic | 40.0% | |
| CGTCGCTTCTTGCATTTAAA+TGG | + | chr1.1:11252980-11252999 | None:intergenic | 40.0% | |
| CTCTGATCCTCTGCAAAAAT+AGG | + | chr1.1:11253841-11253860 | None:intergenic | 40.0% | |
| GATGAATGTTACTGGAGCAT+AGG | - | chr1.1:11253652-11253671 | MS.gene31627:intron | 40.0% | |
| GCAACATTAAACCAACTACC+GGG | + | chr1.1:11254280-11254299 | None:intergenic | 40.0% | |
| GGCAACATTAAACCAACTAC+CGG | + | chr1.1:11254281-11254300 | None:intergenic | 40.0% | |
| TAACGCGATCTCTTGATTCA+CGG | + | chr1.1:11252691-11252710 | None:intergenic | 40.0% | |
| TCAAGCCTGATGAATGTTAC+TGG | - | chr1.1:11253644-11253663 | MS.gene31627:intron | 40.0% | |
| TCCATACCATTACCCTGATT+GGG | + | chr1.1:11253279-11253298 | None:intergenic | 40.0% | |
| TGAGAAGGAAGATGAGAAGA+CGG | - | chr1.1:11252135-11252154 | MS.gene31627:intron | 40.0% | |
| TGATTCACGGTCCTTATCAT+TGG | + | chr1.1:11252678-11252697 | None:intergenic | 40.0% | |
| TGGATCTGGTACCATATCTT+GGG | - | chr1.1:11252926-11252945 | MS.gene31627:CDS | 40.0% | |
| TGTATTCGACTTCATCGCTA+AGG | - | chr1.1:11251925-11251944 | MS.gene31627:intron | 40.0% | |
| TTGGATTTGAGGATTTCTCC+CGG | - | chr1.1:11254259-11254278 | MS.gene31627:CDS | 40.0% | |
| ! | AGAGAACGGAATAGGTTTTG+AGG | + | chr1.1:11251864-11251883 | None:intergenic | 40.0% |
| ! | ATATAGATGGACTTAGGCAG+GGG | + | chr1.1:11252839-11252858 | None:intergenic | 40.0% |
| ! | ATGAGGTTTGGGTTTCTTCT+TGG | + | chr1.1:11251823-11251842 | None:intergenic | 40.0% |
| ! | CTGGTGGAAATGTCTTGTTA+AGG | - | chr1.1:11253900-11253919 | MS.gene31627:intron | 40.0% |
| ! | GATATAGATGGACTTAGGCA+GGG | + | chr1.1:11252840-11252859 | None:intergenic | 40.0% |
| ! | GATTTTGTTCCATTTGGCAC+TGG | + | chr1.1:11253354-11253373 | None:intergenic | 40.0% |
| ! | GCTCTCAGGTTCAACTTTTT+GGG | + | chr1.1:11253944-11253963 | None:intergenic | 40.0% |
| ! | TGATATAGATGGACTTAGGC+AGG | + | chr1.1:11252841-11252860 | None:intergenic | 40.0% |
| ! | TGCTCTCAGGTTCAACTTTT+TGG | + | chr1.1:11253945-11253964 | None:intergenic | 40.0% |
| !! | ACATTTTCGAGAAAAGCGGT+TGG | + | chr1.1:11251908-11251927 | None:intergenic | 40.0% |
| !! | GAGAACGGAATAGGTTTTGA+GGG | + | chr1.1:11251863-11251882 | None:intergenic | 40.0% |
| !! | TCCACAATTTCTAGCTCAAC+CGG | - | chr1.1:11252458-11252477 | MS.gene31627:CDS | 40.0% |
| AAGGAAGATGAGAAGACGGA+TGG | - | chr1.1:11252139-11252158 | MS.gene31627:intron | 45.0% | |
| AAGGTGGAAGAGAACGGAAT+AGG | + | chr1.1:11251872-11251891 | None:intergenic | 45.0% | |
| ACAGTTCCCAATCAGGGTAA+TGG | - | chr1.1:11253270-11253289 | MS.gene31627:intron | 45.0% | |
| ACCATATCTTGGGGGAATTC+AGG | - | chr1.1:11252936-11252955 | MS.gene31627:CDS | 45.0% | |
| ACCGGTTGAGCTAGAAATTG+TGG | + | chr1.1:11252462-11252481 | None:intergenic | 45.0% | |
| AGCTATGGAGGTAGATGAGA+AGG | - | chr1.1:11252120-11252139 | MS.gene31627:intron | 45.0% | |
| CCAAGCATGATCAAATGGAC+TGG | - | chr1.1:11253881-11253900 | MS.gene31627:intron | 45.0% | |
| CCAGTCCATTTGATCATGCT+TGG | + | chr1.1:11253884-11253903 | None:intergenic | 45.0% | |
| CCATATCTTGGGGGAATTCA+GGG | - | chr1.1:11252937-11252956 | MS.gene31627:CDS | 45.0% | |
| GATCAGAGGCAGAAGTCTAT+GGG | - | chr1.1:11254320-11254339 | MS.gene31627:CDS | 45.0% | |
| GATCCATAGTTTGGACTGAC+AGG | + | chr1.1:11252912-11252931 | None:intergenic | 45.0% | |
| GATCTGGTACCATATCTTGG+GGG | - | chr1.1:11252928-11252947 | MS.gene31627:CDS | 45.0% | |
| GGATCTGGTACCATATCTTG+GGG | - | chr1.1:11252927-11252946 | MS.gene31627:CDS | 45.0% | |
| GGTTGGATTTGAAGGATCGA+AGG | + | chr1.1:11251891-11251910 | None:intergenic | 45.0% | |
| GTCAGTCCAAACTATGGATC+TGG | - | chr1.1:11252912-11252931 | MS.gene31627:CDS | 45.0% | |
| GTGAATGTTCCAGTGCCAAA+TGG | - | chr1.1:11253342-11253361 | MS.gene31627:intron | 45.0% | |
| TGATCAGAGGCAGAAGTCTA+TGG | - | chr1.1:11254319-11254338 | MS.gene31627:CDS | 45.0% | |
| TGGATTTGAAGGATCGAAGG+TGG | + | chr1.1:11251888-11251907 | None:intergenic | 45.0% | |
| ! | CACAAACAAGTGTCACTGGA+AGG | + | chr1.1:11253494-11253513 | None:intergenic | 45.0% |
| ! | CGATAATGATTCGGCTGAGA+AGG | - | chr1.1:11251964-11251983 | MS.gene31627:CDS | 45.0% |
| ! | TAATGATTCGGCTGAGAAGG+TGG | - | chr1.1:11251967-11251986 | MS.gene31627:CDS | 45.0% |
| ! | TCAGGGTAATGGTATGGATC+TGG | - | chr1.1:11253281-11253300 | MS.gene31627:intron | 45.0% |
| ! | TCCCAATCAGGGTAATGGTA+TGG | - | chr1.1:11253275-11253294 | MS.gene31627:intron | 45.0% |
| ! | TGATGGACAGTTCCCAATCA+GGG | - | chr1.1:11253264-11253283 | MS.gene31627:intron | 45.0% |
| ! | TTGATGGACAGTTCCCAATC+AGG | - | chr1.1:11253263-11253282 | MS.gene31627:intron | 45.0% |
| !! | AGAGAAGGCGAAGGTTGATA+AGG | - | chr1.1:11252066-11252085 | MS.gene31627:intron | 45.0% |
| !! | AGCATGATCAAATGGACTGG+TGG | - | chr1.1:11253884-11253903 | MS.gene31627:intron | 45.0% |
| AAACCCACACACACGCAAGT+CGG | + | chr1.1:11252517-11252536 | None:intergenic | 50.0% | |
| AAGTGAGGAGCTCCAGAAAC+AGG | - | chr1.1:11254352-11254371 | MS.gene31627:CDS | 50.0% | |
| CCCTGAATTCCCCCAAGATA+TGG | + | chr1.1:11252940-11252959 | None:intergenic | 50.0% | |
| CGTTCCTTCTGTCTTTAGCC+TGG | - | chr1.1:11253538-11253557 | MS.gene31627:intron | 50.0% | |
| CTCCCTGTCAGTCCAAACTA+TGG | - | chr1.1:11252906-11252925 | MS.gene31627:CDS | 50.0% | |
| CTTTACCTTCACAGCGCGAA+CGG | + | chr1.1:11252002-11252021 | None:intergenic | 50.0% | |
| GAACCTGAGAGCAGCAAACT+TGG | - | chr1.1:11253952-11253971 | MS.gene31627:intron | 50.0% | |
| GAGAAGACGGATGGAGAAAG+TGG | - | chr1.1:11252148-11252167 | MS.gene31627:intron | 50.0% | |
| GATGGAGAAAGTGGCTTAGC+AGG | - | chr1.1:11252157-11252176 | MS.gene31627:intron | 50.0% | |
| GCATTCGAGAAGTCCATCTC+CGG | + | chr1.1:11254510-11254529 | None:intergenic | 50.0% | |
| GGATCGAAGGTGGAAGAGAA+CGG | + | chr1.1:11251878-11251897 | None:intergenic | 50.0% | |
| TATGGGCCTTCCAACAAGTG+AGG | - | chr1.1:11254337-11254356 | MS.gene31627:CDS | 50.0% | |
| TCAACAGTCTGTCGAGTCTC+AGG | + | chr1.1:11253988-11254007 | None:intergenic | 50.0% | |
| TGAGGATTTCTCCCGGTAGT+TGG | - | chr1.1:11254266-11254285 | MS.gene31627:CDS | 50.0% | |
| TGCTGTTGAAGAGAAGGCGA+AGG | - | chr1.1:11252057-11252076 | MS.gene31627:intron | 50.0% | |
| TGTATTGCAGCATCCGGAGA+TGG | - | chr1.1:11254494-11254513 | MS.gene31627:CDS | 50.0% | |
| !! | GAAGGCGAAGGTTGATAAGG+CGG | - | chr1.1:11252069-11252088 | MS.gene31627:intron | 50.0% |
| !! | TCACCAAGTTTGCTGCTCTC+AGG | + | chr1.1:11253958-11253977 | None:intergenic | 50.0% |
| !! | TTCTGGAGCTCCTCACTTGT+TGG | + | chr1.1:11254350-11254369 | None:intergenic | 50.0% |
| AACCCACACACACGCAAGTC+GGG | + | chr1.1:11252516-11252535 | None:intergenic | 55.0% | |
| CTTGCGTGTGTGTGGGTTTC+CGG | - | chr1.1:11252518-11252537 | MS.gene31627:intron | 55.0% | |
| GGCGGAGAAGAAAGCTATGG+AGG | - | chr1.1:11252108-11252127 | MS.gene31627:intron | 55.0% | |
| TCTGTCGAGTCTCAGGATCC+AGG | + | chr1.1:11253981-11254000 | None:intergenic | 55.0% | |
| TGCGGCGGAGAAGAAAGCTA+TGG | - | chr1.1:11252105-11252124 | MS.gene31627:intron | 55.0% | |
| ! | GAGCAGCAAACTTGGTGACC+TGG | - | chr1.1:11253960-11253979 | MS.gene31627:intron | 55.0% |
| ! | GGAGCTCCTCACTTGTTGGA+AGG | + | chr1.1:11254346-11254365 | None:intergenic | 55.0% |
| ACCCACACACACGCAAGTCG+GGG | + | chr1.1:11252515-11252534 | None:intergenic | 60.0% | |
| TACCTTCACAGCGCGAACGG+CGG | + | chr1.1:11251999-11252018 | None:intergenic | 60.0% | |
| ! | AACCCCGACTTGCGTGTGTG+TGG | - | chr1.1:11252510-11252529 | MS.gene31627:intron | 60.0% |
| ! | ACCCCGACTTGCGTGTGTGT+GGG | - | chr1.1:11252511-11252530 | MS.gene31627:intron | 60.0% |
| !! | GGCGAAGGTTGATAAGGCGG+CGG | - | chr1.1:11252072-11252091 | MS.gene31627:intron | 60.0% |
| ATCCGCCGTTCGCGCTGTGA+AGG | - | chr1.1:11251994-11252013 | MS.gene31627:CDS | 65.0% | |
| GGCGGCGGCTGCTGTTGCTG+CGG | - | chr1.1:11252087-11252106 | MS.gene31627:intron | 75.0% | |
| GGCGGCTGCTGTTGCTGCGG+CGG | - | chr1.1:11252090-11252109 | MS.gene31627:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 11251800 | 11254542 | 11251800 | ID=MS.gene31627 |
| chr1.1 | mRNA | 11251800 | 11254542 | 11251800 | ID=MS.gene31627.t1;Parent=MS.gene31627 |
| chr1.1 | exon | 11254164 | 11254542 | 11254164 | ID=MS.gene31627.t1.exon1;Parent=MS.gene31627.t1 |
| chr1.1 | CDS | 11254164 | 11254542 | 11254164 | ID=cds.MS.gene31627.t1;Parent=MS.gene31627.t1 |
| chr1.1 | exon | 11252896 | 11253068 | 11252896 | ID=MS.gene31627.t1.exon2;Parent=MS.gene31627.t1 |
| chr1.1 | CDS | 11252896 | 11253068 | 11252896 | ID=cds.MS.gene31627.t1;Parent=MS.gene31627.t1 |
| chr1.1 | exon | 11252669 | 11252717 | 11252669 | ID=MS.gene31627.t1.exon3;Parent=MS.gene31627.t1 |
| chr1.1 | CDS | 11252669 | 11252717 | 11252669 | ID=cds.MS.gene31627.t1;Parent=MS.gene31627.t1 |
| chr1.1 | exon | 11252325 | 11252491 | 11252325 | ID=MS.gene31627.t1.exon4;Parent=MS.gene31627.t1 |
| chr1.1 | CDS | 11252325 | 11252491 | 11252325 | ID=cds.MS.gene31627.t1;Parent=MS.gene31627.t1 |
| chr1.1 | exon | 11251942 | 11252025 | 11251942 | ID=MS.gene31627.t1.exon5;Parent=MS.gene31627.t1 |
| chr1.1 | CDS | 11251942 | 11252025 | 11251942 | ID=cds.MS.gene31627.t1;Parent=MS.gene31627.t1 |
| chr1.1 | exon | 11251800 | 11251838 | 11251800 | ID=MS.gene31627.t1.exon6;Parent=MS.gene31627.t1 |
| chr1.1 | CDS | 11251800 | 11251838 | 11251800 | ID=cds.MS.gene31627.t1;Parent=MS.gene31627.t1 |
| Gene Sequence |
| Protein sequence |
