AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054413


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054413.t1 MTR_7g112350 98.496 532 8 0 1 532 1 532 0.0 1078
MS.gene054413.t1 MTR_1g083810 88.910 532 59 0 1 532 1 532 0.0 989
MS.gene054413.t1 MTR_2g034900 83.271 532 85 3 1 531 1 529 0.0 910
MS.gene054413.t1 MTR_4g121435 71.985 539 132 6 1 531 1 528 0.0 783
MS.gene054413.t1 MTR_4g131510 77.230 426 97 0 79 504 1 426 0.0 699
MS.gene054413.t1 MTR_4g133040 71.163 430 122 2 70 498 3 431 0.0 635
MS.gene054413.t1 MTR_4g133030 73.005 426 114 1 83 507 2 427 0.0 631
MS.gene054413.t1 MTR_8g027585 71.868 423 118 1 110 532 25 446 0.0 623
MS.gene054413.t1 MTR_4g131000 66.234 462 118 3 79 504 1 460 0.0 603
MS.gene054413.t1 MTR_4g132980 67.290 428 111 2 79 506 1 399 0.0 577
MS.gene054413.t1 MTR_4g127570 58.605 430 107 4 83 511 2 361 9.09e-164 472
MS.gene054413.t1 MTR_1g053470 66.768 328 93 4 208 532 1 315 1.56e-147 426
MS.gene054413.t1 MTR_1g053470 26.047 215 145 6 108 314 30 238 2.93e-11 65.1
MS.gene054413.t1 MTR_7g112150 47.399 519 250 12 1 499 1 516 4.60e-147 432
MS.gene054413.t1 MTR_1g053470 70.000 300 87 3 208 504 1 300 4.55e-143 414
MS.gene054413.t1 MTR_1g053470 26.047 215 145 6 108 314 30 238 2.77e-11 65.1
MS.gene054413.t1 MTR_1g053470 66.563 323 92 4 208 527 1 310 8.86e-143 416
MS.gene054413.t1 MTR_1g053470 26.047 215 145 6 108 314 30 238 9.57e-11 63.9
MS.gene054413.t1 MTR_4g132980 68.403 288 74 1 219 506 1 271 5.11e-134 392
MS.gene054413.t1 MTR_4g013265 50.708 424 96 7 110 532 11 322 2.76e-128 377
MS.gene054413.t1 MTR_7g112160 43.725 510 246 13 14 504 15 502 1.01e-111 342
MS.gene054413.t1 MTR_7g113400 46.489 413 200 10 14 408 15 424 8.01e-102 313
MS.gene054413.t1 MTR_4g132960 63.684 190 52 1 318 507 3 175 1.09e-71 228
MS.gene054413.t1 MTR_4g132967 58.421 190 45 1 318 507 7 162 1.36e-62 204
MS.gene054413.t1 MTR_1g066760 30.116 518 317 15 14 499 10 514 1.25e-53 189
MS.gene054413.t1 MTR_4g124270 33.146 178 82 5 119 290 11 157 7.60e-18 81.6
MS.gene054413.t1 MTR_4g124270 61.017 59 23 0 323 381 64 122 4.68e-15 73.6
MS.gene054413.t1 MTR_7g113402 47.253 91 33 3 420 508 22 99 1.98e-14 69.7
MS.gene054413.t1 MTR_7g059405 27.519 258 180 6 135 392 376 626 5.82e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054413.t1 AT4G16143 80.224 536 99 2 1 531 1 534 0.0 868
MS.gene054413.t1 AT4G16143 80.224 536 99 2 1 531 1 534 0.0 868
MS.gene054413.t1 AT3G06720 79.252 535 105 4 1 532 1 532 0.0 864
MS.gene054413.t1 AT3G06720 79.252 535 105 4 1 532 1 532 0.0 864
MS.gene054413.t1 AT1G09270 73.383 541 130 6 1 531 1 537 0.0 785
MS.gene054413.t1 AT1G09270 73.383 541 130 6 1 531 1 537 0.0 785
MS.gene054413.t1 AT1G02690 69.630 540 152 5 1 531 1 537 0.0 771
MS.gene054413.t1 AT1G02690 69.501 541 152 6 1 531 1 538 0.0 766
MS.gene054413.t1 AT4G02150 70.315 539 143 5 1 531 1 530 0.0 761
MS.gene054413.t1 AT1G09270 77.193 456 99 3 79 531 2 455 0.0 705
MS.gene054413.t1 AT5G49310 63.872 501 174 4 1 501 1 494 0.0 633
MS.gene054413.t1 AT3G05720 64.300 493 157 6 13 497 9 490 0.0 613
MS.gene054413.t1 AT3G05720 64.300 493 157 6 13 497 9 490 0.0 613
MS.gene054413.t1 AT4G02150 71.325 415 106 3 1 408 1 409 0.0 603
MS.gene054413.t1 AT5G52000 52.381 420 187 6 79 497 14 421 1.12e-143 421
MS.gene054413.t1 AT5G49305 42.691 431 186 9 78 502 2 377 4.98e-100 307
MS.gene054413.t1 AT5G49305 42.691 431 186 9 78 502 2 377 4.98e-100 307
MS.gene054413.t1 AT5G49305 42.691 431 186 9 78 502 2 377 4.98e-100 307
MS.gene054413.t1 AT5G49305 42.691 431 186 9 78 502 2 377 4.98e-100 307
MS.gene054413.t1 AT5G49305 42.691 431 186 9 78 502 2 377 4.98e-100 307
MS.gene054413.t1 AT1G32880 63.265 147 49 3 363 507 40 183 8.39e-56 185
MS.gene054413.t1 AT5G03070 28.958 518 323 12 14 499 10 514 1.24e-51 184

Find 145 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGTTCCTGCCGTGCCTTC+TGG 0.268271 7.4:-4324815 MS.gene054413:CDS
TGGGAACAAGCAACAGATTC+AGG 0.277528 7.4:-4325491 MS.gene054413:intron
GTGATTGATGCCAGTATAAT+TGG 0.305012 7.4:-4325378 MS.gene054413:CDS
CCAGGTGATGCTTCTCAATC+AGG 0.305394 7.4:-4324857 MS.gene054413:CDS
CACCTACCAGCCTTGGTTAC+AGG 0.310563 7.4:-4328218 MS.gene054413:CDS
ATCTAATCTACTCGAGAAAA+AGG 0.313044 7.4:-4328811 MS.gene054413:intron
GATTGACGAAGCTGAGGGTT+TGG 0.332266 7.4:-4324984 MS.gene054413:CDS
AGGGCTTGAAAACATCTTAA+AGG 0.333351 7.4:-4325065 MS.gene054413:CDS
TTTCTTCCCTCCGATTCTTC+CGG 0.351570 7.4:+4328892 None:intergenic
TGCCAGTATAATTGGTCCTT+TGG 0.355834 7.4:-4325370 MS.gene054413:CDS
GTTTCTGAGCATAGAAAGTT+TGG 0.355939 7.4:+4327215 None:intergenic
CAATCAGGGTTCAACTTTGG+TGG 0.368535 7.4:-4324842 MS.gene054413:CDS
TGTCAGGCCGTGTGGGCATT+GGG 0.369223 7.4:-4327327 MS.gene054413:intron
AGACTTCTTCATCATTTGAA+TGG 0.376843 7.4:+4326393 None:intergenic
GCATCAAGAAGGAAGCTTGC+TGG 0.387204 7.4:-4325534 MS.gene054413:CDS
CTGTCAGGCCGTGTGGGCAT+TGG 0.388924 7.4:-4327328 MS.gene054413:intron
GCTTTGACAAATATAGCTTC+TGG 0.398936 7.4:-4327840 MS.gene054413:CDS
CAGCCTTGGTTACAGGAATC+TGG 0.399141 7.4:-4328211 MS.gene054413:CDS
TCGGTTCTCGCGTTTGCGTT+AGG 0.408259 7.4:+4328993 None:intergenic
TGGAGCTTTGCTTCCTCTGT+TGG 0.414916 7.4:-4327256 MS.gene054413:CDS
TAGTGATGATGTTCGTGAAC+AGG 0.421824 7.4:-4327745 MS.gene054413:intron
ATTGTGACAGTTTGTCTTGA+AGG 0.422808 7.4:-4325085 MS.gene054413:CDS
AGATGCCGTGATCTTGTTCT+CGG 0.423165 7.4:-4327282 MS.gene054413:CDS
TTTCGGAAGTTGCTTTCAAT+TGG 0.424061 7.4:-4328149 MS.gene054413:intron
TTGAGGCAACAACTCAGTTT+CGG 0.428701 7.4:-4328166 MS.gene054413:CDS
AAGATATGAAAGTGCCCAAC+AGG 0.430566 7.4:+4326361 None:intergenic
TCTCAATCAGGGTTCAACTT+TGG 0.432782 7.4:-4324845 MS.gene054413:CDS
TGAAGATTCTCGAGACATAC+TGG 0.452976 7.4:-4324907 MS.gene054413:CDS
GACCAAAGGACCAATTATAC+TGG 0.463096 7.4:+4325368 None:intergenic
CAACACTGAGATTTATGAAA+AGG 0.463560 7.4:-4324933 MS.gene054413:CDS
CTGGCAAGTGCAGGAAGTGC+AGG 0.465783 7.4:+4326422 None:intergenic
GCACTTTCATATCTTTCTGA+TGG 0.469094 7.4:-4326353 MS.gene054413:CDS
AGTCTTGACTGATGCCTGTT+GGG 0.470829 7.4:-4326375 MS.gene054413:CDS
GTTGTAGTTTGAGGCAGCAT+GGG 0.471388 7.4:-4327862 MS.gene054413:intron
AGACAAACTGTCACAATCCT+AGG 0.471935 7.4:+4325091 None:intergenic
TGGGCATTGGGAAATGTTGC+TGG 0.473260 7.4:-4327315 MS.gene054413:CDS
GGACACTCTCAAACTTCTGC+AGG 0.478892 7.4:-4327185 MS.gene054413:CDS
TTTCCAACTGTGCGTAGAGC+AGG 0.479185 7.4:+4326146 None:intergenic
CGTGATCTTGTTCTCGGTCA+TGG 0.484918 7.4:-4327276 MS.gene054413:CDS
TGATAATAACATGCAGTTTG+AGG 0.493472 7.4:-4328183 MS.gene054413:CDS
TTGTGACAGTTTGTCTTGAA+GGG 0.493627 7.4:-4325084 MS.gene054413:CDS
TACTCACATGTCCTGATCCT+AGG 0.494731 7.4:-4325108 MS.gene054413:CDS
CAGATTCCTGTAACCAAGGC+TGG 0.496109 7.4:+4328212 None:intergenic
ATCATTTGAATGGATGAGAC+TGG 0.497906 7.4:+4326403 None:intergenic
ATCAAGAGGTTCTTAAGAGA+AGG 0.500451 7.4:+4325574 None:intergenic
TTGAAGCTGGTGTCTGTAGC+CGG 0.506023 7.4:-4326304 MS.gene054413:CDS
GCATCACTGATGGCGTGAAT+CGG 0.506234 7.4:-4325018 MS.gene054413:CDS
CAGGTGATGCTTCTCAATCA+GGG 0.510659 7.4:-4324856 MS.gene054413:CDS
TGGTTGAGATCCGGAAGAAT+CGG 0.510945 7.4:-4328902 MS.gene054413:CDS
CTTGAAAACATCTTAAAGGT+AGG 0.512889 7.4:-4325061 MS.gene054413:CDS
AGGATAACTTGGTTGAGATC+CGG 0.514824 7.4:-4328911 MS.gene054413:CDS
TAATGCACCCTTGACTTACC+AGG 0.515624 7.4:+4325146 None:intergenic
GGTGCAAATGACAAAATTCA+AGG 0.516277 7.4:-4326332 MS.gene054413:CDS
CCTGATTGAGAAGCATCACC+TGG 0.519394 7.4:+4324857 None:intergenic
TTGAAAACATCTTAAAGGTA+GGG 0.520099 7.4:-4325060 MS.gene054413:CDS
ACAATTTCGAACATCACAGC+TGG 0.521802 7.4:-4325511 MS.gene054413:CDS
GGAATAAGCACAGAAGGAGA+TGG 0.522068 7.4:+4326167 None:intergenic
AGTCCAGATTCCTGTAACCA+AGG 0.523005 7.4:+4328208 None:intergenic
GGCAATCTCAAATGCTACAT+CGG 0.524735 7.4:-4325298 MS.gene054413:CDS
AAAATTGGCCGACAGGTACC+TGG 0.527302 7.4:-4325164 MS.gene054413:intron
GTGGCGGTTGATGCGGAAGA+AGG 0.528330 7.4:-4328948 MS.gene054413:CDS
AGAACGTAGCCCACCGATTG+AGG 0.529104 7.4:-4328035 MS.gene054413:CDS
ACCTGATCAAAAGCAGGTTG+TGG 0.529289 7.4:+4327156 None:intergenic
GCAATCTCAAATGCTACATC+GGG 0.530239 7.4:-4325297 MS.gene054413:CDS
ATATCAAGAAGGAAGCTGCC+TGG 0.530844 7.4:-4325320 MS.gene054413:CDS
GCTTGTATAACCTCCTCAAT+CGG 0.530974 7.4:+4328022 None:intergenic
AGATTAGATTGAACTGATGC+AGG 0.532270 7.4:+4328825 None:intergenic
GTTCCTGCCGTGCCTTCTGG+TGG 0.536067 7.4:-4324812 MS.gene054413:CDS
TCTCAGTGTTGTCATGACTC+TGG 0.536088 7.4:+4324945 None:intergenic
TGTTGTAGTTTGAGGCAGCA+TGG 0.536379 7.4:-4327863 MS.gene054413:intron
GATGACGAGGCTATGCCTCC+AGG 0.538922 7.4:-4324875 MS.gene054413:CDS
ACTGTCACAATCCTAGGATC+AGG 0.541962 7.4:+4325097 None:intergenic
GTTGGAACACCTACCAGCCT+TGG 0.541974 7.4:-4328225 MS.gene054413:CDS
AGAACAAGATCACGGCATCT+AGG 0.541982 7.4:+4327285 None:intergenic
CTTTATACCTGATCAAAAGC+AGG 0.544346 7.4:+4327150 None:intergenic
AAACACTAAGGTAGTAATTG+AGG 0.546623 7.4:-4327808 MS.gene054413:CDS
TATCAAGAAGGAAGCTGCCT+GGG 0.546647 7.4:-4325319 MS.gene054413:CDS
AGAAGGTCGGAGACGGAGAG+AGG 0.547856 7.4:-4328931 MS.gene054413:CDS
TGTGGACTGTCAGGCCGTGT+GGG 0.549793 7.4:-4327334 MS.gene054413:intron
AATCCACCAGAAGGCACGGC+AGG 0.551892 7.4:+4324809 None:intergenic
GTATCGATTCCGACGAACCT+CGG 0.552883 7.4:+4328974 None:intergenic
AGAAGGCACGGCAGGAACAT+CGG 0.557422 7.4:+4324817 None:intergenic
GAGACGGAGAGAGGATAACT+TGG 0.560975 7.4:-4328922 MS.gene054413:CDS
ATTCCTGCTCTACGCACAGT+TGG 0.563062 7.4:-4326149 MS.gene054413:CDS
ATTCAAGGCGTAATTGAAGC+TGG 0.564008 7.4:-4326317 MS.gene054413:CDS
ATCTCAAATGCTACATCGGG+TGG 0.565698 7.4:-4325294 MS.gene054413:CDS
TGAAAACATCTTAAAGGTAG+GGG 0.566752 7.4:-4325059 MS.gene054413:CDS
AGAGCAGGAATAAGCACAGA+AGG 0.573010 7.4:+4326161 None:intergenic
ATGCGGAAGAAGGTCGGAGA+CGG 0.573816 7.4:-4328938 MS.gene054413:CDS
ATTGAGGAGGTTATACAAGC+TGG 0.574779 7.4:-4328019 MS.gene054413:CDS
AAGATAATAACCTGCAGCTG+TGG 0.578665 7.4:+4327953 None:intergenic
GACAGGTACCTGGTAAGTCA+AGG 0.580186 7.4:-4325154 MS.gene054413:intron
GACACTCTCAAACTTCTGCA+GGG 0.582716 7.4:-4327184 MS.gene054413:CDS
ATTCACGCCATCAGTGATGC+CGG 0.582855 7.4:+4325021 None:intergenic
GATTCTCGAGACATACTGGT+TGG 0.583097 7.4:-4324903 MS.gene054413:CDS
CGGTTGATGCGGAAGAAGGT+CGG 0.583578 7.4:-4328944 MS.gene054413:CDS
AAGTCTTGACTGATGCCTGT+TGG 0.583997 7.4:-4326376 MS.gene054413:CDS
TGTAGCATTTGAGATTGCCC+AGG 0.585756 7.4:+4325302 None:intergenic
TGGAACATCTGAAAACACTA+AGG 0.585901 7.4:-4327820 MS.gene054413:CDS
TGGATGAGACTGGCAAGTGC+AGG 0.586919 7.4:+4326413 None:intergenic
GTGTGGACTGTCAGGCCGTG+TGG 0.587261 7.4:-4327335 MS.gene054413:intron
GTTGAATCCACCAGAAGGCA+CGG 0.589872 7.4:+4324805 None:intergenic
TCTCGAGACATACTGGTTGG+AGG 0.590172 7.4:-4324900 MS.gene054413:CDS
GAATAAGCACAGAAGGAGAT+GGG 0.590390 7.4:+4326168 None:intergenic
ACAGTTGGAAATATTGTCAC+TGG 0.591504 7.4:-4326134 MS.gene054413:CDS
GGTTCGTCGGAATCGATACA+AGG 0.595021 7.4:-4328970 MS.gene054413:CDS
ACGCGAGAACCGAGGTTCGT+CGG 0.595335 7.4:-4328983 MS.gene054413:CDS
TGTATAACCTCCTCAATCGG+TGG 0.596128 7.4:+4328025 None:intergenic
TGCTGAGTTTGATATCAAGA+AGG 0.598148 7.4:-4325331 MS.gene054413:CDS
CAGTGTTGTCATGACTCTGG+AGG 0.600196 7.4:+4324948 None:intergenic
AACATTTCCCAATGCCCACA+CGG 0.600269 7.4:+4327320 None:intergenic
TTGCAAAAGAAGAGGCGTGA+AGG 0.602711 7.4:-4328867 MS.gene054413:CDS
ATACAAGGTGGCGGTTGATG+CGG 0.609006 7.4:-4328955 MS.gene054413:CDS
GTATAACCTCCTCAATCGGT+GGG 0.609405 7.4:+4328026 None:intergenic
TTGAGATCCGGAAGAATCGG+AGG 0.610209 7.4:-4328899 MS.gene054413:CDS
AAGAAAGCTTGCAAAAGAAG+AGG 0.610836 7.4:-4328875 MS.gene054413:CDS
ACAGTAGAAGCTCAACAAGC+CGG 0.611612 7.4:+4326285 None:intergenic
ACTAAGGTAGTAATTGAGGC+AGG 0.612619 7.4:-4327804 MS.gene054413:CDS
ACTGATGCAGGCATCTGCTG+AGG 0.637302 7.4:+4328837 None:intergenic
CTGGTTGGAGGAAGATGACG+AGG 0.640896 7.4:-4324888 MS.gene054413:CDS
TAAGAGAAGGAAGAACTCGA+TGG 0.641399 7.4:+4325587 None:intergenic
ACAGGTACCTGGTAAGTCAA+GGG 0.643325 7.4:-4325153 MS.gene054413:intron
TGAAATGATTGACGAAGCTG+AGG 0.643868 7.4:-4324990 MS.gene054413:CDS
CAATTTCGAACATCACAGCT+GGG 0.644095 7.4:-4325510 MS.gene054413:CDS
ACATGTGAGTAGATCACACA+AGG 0.644923 7.4:+4325120 None:intergenic
TTCCTGTAACCAAGGCTGGT+AGG 0.648193 7.4:+4328216 None:intergenic
TGGAGATGACTTGCAGACAC+AGG 0.648488 7.4:-4326114 MS.gene054413:intron
CTATGCTCAGAAACGCCACA+TGG 0.649323 7.4:-4327206 MS.gene054413:CDS
TCATTCAATTGCGCCAACAG+AGG 0.649416 7.4:+4327243 None:intergenic
TGTTCACGAACATCATCACT+AGG 0.652458 7.4:+4327747 None:intergenic
CATCATCACTAGGAGAAGCA+AGG 0.654239 7.4:+4327757 None:intergenic
ACACTCTCAAACTTCTGCAG+GGG 0.658228 7.4:-4327183 MS.gene054413:CDS
TTAAAGTTGAATCCACCAGA+AGG 0.661830 7.4:+4324800 None:intergenic
TCGGAATCGATACAAGGTGG+CGG 0.663630 7.4:-4328964 MS.gene054413:CDS
TGAGATCCGGAAGAATCGGA+GGG 0.664863 7.4:-4328898 MS.gene054413:CDS
ACGTAGCCCACCGATTGAGG+AGG 0.667976 7.4:-4328032 MS.gene054413:CDS
CATGACCGAGAACAAGATCA+CGG 0.670358 7.4:+4327277 None:intergenic
TAACGCAAACGCGAGAACCG+AGG 0.690745 7.4:-4328991 MS.gene054413:CDS
TAAGCACAGAAGGAGATGGG+TGG 0.711417 7.4:+4326171 None:intergenic
GAAATGATTGACGAAGCTGA+GGG 0.713200 7.4:-4324989 MS.gene054413:CDS
GATTGAGAAGCATCACCTGG+AGG 0.716664 7.4:+4324860 None:intergenic
ATCAAGAACTCAATAAAACG+AGG 0.733523 7.4:+4327989 None:intergenic
TCGTCGGAATCGATACAAGG+TGG 0.735526 7.4:-4328967 MS.gene054413:CDS
CATGTGAGTAGATCACACAA+GGG 0.757129 7.4:+4325121 None:intergenic
GAAGTTTGAGAGTGTCCATG+TGG 0.759250 7.4:+4327191 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTTTATATTGAAAAATTA+TGG - chr7.4:4326962-4326981 MS.gene054413:intron 10.0%
!!! TATTATTTTACTTTTGATTT+TGG - chr7.4:4328150-4328169 MS.gene054413:CDS 10.0%
!!! TGAAATTCTAATTATTATTT+TGG - chr7.4:4327597-4327616 MS.gene054413:intron 10.0%
!!! TTTTGTATACAATTTTTTAA+GGG - chr7.4:4325713-4325732 MS.gene054413:intron 10.0%
!!! TTTTTGTATACAATTTTTTA+AGG - chr7.4:4325712-4325731 MS.gene054413:intron 10.0%
!! AATAAGAAAATTCAAACAAA+TGG + chr7.4:4326878-4326897 None:intergenic 15.0%
!! CAGATATAAACAAATATTAA+AGG + chr7.4:4326825-4326844 None:intergenic 15.0%
!!! TAAAATTGATGATAGTAATT+AGG - chr7.4:4325220-4325239 MS.gene054413:intron 15.0%
!!! TGTCATAATCTTTTTAAAAT+TGG - chr7.4:4328622-4328641 MS.gene054413:intron 15.0%
!!! TTTTATAACTATTAATCAAG+AGG + chr7.4:4328244-4328263 None:intergenic 15.0%
!! ACAAGGTTTGATTAATATTA+TGG - chr7.4:4325507-4325526 MS.gene054413:CDS 20.0%
!! ACTTCATTAACAAAAAAAGA+AGG + chr7.4:4326174-4326193 None:intergenic 20.0%
!! ATTTCACATCATAATAACTA+AGG + chr7.4:4327583-4327602 None:intergenic 20.0%
!! CTATTGCATAAAATAAAACA+AGG + chr7.4:4325874-4325893 None:intergenic 20.0%
!! CTTCATTAACAAAAAAAGAA+GGG + chr7.4:4326173-4326192 None:intergenic 20.0%
!! TGAAATTAAAATTAAACGCA+TGG - chr7.4:4327817-4327836 MS.gene054413:CDS 20.0%
!! TTAAAAAGATTATGACATCT+CGG + chr7.4:4328619-4328638 None:intergenic 20.0%
!! TTTCACATCATAATAACTAA+GGG + chr7.4:4327582-4327601 None:intergenic 20.0%
!!! AATTGAGAAATTGATAATAC+TGG - chr7.4:4325091-4325110 MS.gene054413:CDS 20.0%
!!! ACCATATAAATTTTACTGAT+AGG + chr7.4:4326127-4326146 None:intergenic 20.0%
!!! ATGGTTTCTTACTTTTTATT+GGG - chr7.4:4326142-4326161 MS.gene054413:CDS 20.0%
!!! TATGGTTTCTTACTTTTTAT+TGG - chr7.4:4326141-4326160 MS.gene054413:CDS 20.0%
!!! TGATAATTTTTCAACATACA+AGG + chr7.4:4326923-4326942 None:intergenic 20.0%
!!! TTATAAAAAAAGCATCAAGA+AGG - chr7.4:4328256-4328275 MS.gene054413:intron 20.0%
!!! TTTTTGTTAATGAAGTTAAC+CGG - chr7.4:4326178-4326197 MS.gene054413:intron 20.0%
! AACGTAGTAAAGTAGAAAAT+CGG + chr7.4:4325054-4325073 None:intergenic 25.0%
! AATTAAAATTAAACGCATGG+AGG - chr7.4:4327820-4327839 MS.gene054413:CDS 25.0%
! ACAACACAGGTTAAATAATA+TGG + chr7.4:4327070-4327089 None:intergenic 25.0%
! CTTGATTCTTGAAAATTTAC+AGG - chr7.4:4328398-4328417 MS.gene054413:intron 25.0%
! GCCTATCAGTAAAATTTATA+TGG - chr7.4:4326123-4326142 MS.gene054413:CDS 25.0%
! GGTTTGATTAATATTATGGT+AGG - chr7.4:4325511-4325530 MS.gene054413:CDS 25.0%
! TATAAAACCAACAAAATCAC+CGG + chr7.4:4328583-4328602 None:intergenic 25.0%
! TGAATCAAAACAACATAAAC+AGG + chr7.4:4325254-4325273 None:intergenic 25.0%
! TTGAAAACATCTTAAAGGTA+GGG - chr7.4:4328741-4328760 MS.gene054413:intron 25.0%
!! AAATTTCTTGTTCAAGTTCT+AGG + chr7.4:4326797-4326816 None:intergenic 25.0%
!! AGAACTTGAACAAGAAATTT+TGG - chr7.4:4326797-4326816 MS.gene054413:intron 25.0%
!! ATATATTGATAGTAGCGATT+AGG - chr7.4:4325129-4325148 MS.gene054413:CDS 25.0%
!! GAAATTGATAATACTGGATT+AGG - chr7.4:4325097-4325116 MS.gene054413:CDS 25.0%
!! TTTTATTGAGTTCTTGATGA+GGG - chr7.4:4325817-4325836 MS.gene054413:intron 25.0%
!!! ACAATTTTTTAAGGGACATT+TGG - chr7.4:4325721-4325740 MS.gene054413:intron 25.0%
!!! AGCAGTGTTTGTTAATTTTA+AGG - chr7.4:4325393-4325412 MS.gene054413:intron 25.0%
!!! GCAGTGTTTGTTAATTTTAA+GGG - chr7.4:4325394-4325413 MS.gene054413:intron 25.0%
!!! GTTCACTTTGATTTTAGATT+TGG - chr7.4:4326233-4326252 MS.gene054413:intron 25.0%
!!! TGATTTTGGTTTGTGTTAAT+GGG - chr7.4:4328164-4328183 MS.gene054413:CDS 25.0%
!!! TTGATTTTGGTTTGTGTTAA+TGG - chr7.4:4328163-4328182 MS.gene054413:CDS 25.0%
AAACACTAAGGTAGTAATTG+AGG - chr7.4:4325993-4326012 MS.gene054413:intron 30.0%
AAATGAAGCATAACAAGTAG+GGG + chr7.4:4325366-4325385 None:intergenic 30.0%
AACATGTTCATGATATTCAC+TGG - chr7.4:4325444-4325463 MS.gene054413:intron 30.0%
AATAAAGGTGGTCAAATTTG+TGG - chr7.4:4327030-4327049 MS.gene054413:intron 30.0%
AATTGAGAAATTGATACTGC+TGG - chr7.4:4325154-4325173 MS.gene054413:intron 30.0%
ACACAAGTATAAAGTCCATT+TGG - chr7.4:4326742-4326761 MS.gene054413:intron 30.0%
ACTACGTTGGATAAGTTATT+AGG - chr7.4:4325066-4325085 MS.gene054413:CDS 30.0%
AGACTTCTTCATCATTTGAA+TGG + chr7.4:4327411-4327430 None:intergenic 30.0%
AGAGAAATAGTAATACACAC+TGG - chr7.4:4327776-4327795 MS.gene054413:CDS 30.0%
ATAAAACCAACAAAATCACC+GGG + chr7.4:4328582-4328601 None:intergenic 30.0%
ATCAAGAACTCAATAAAACG+AGG + chr7.4:4325815-4325834 None:intergenic 30.0%
ATCTAATCTACTCGAGAAAA+AGG - chr7.4:4324990-4325009 MS.gene054413:CDS 30.0%
ATCTGTGTTATCTTTGCATT+TGG - chr7.4:4328355-4328374 MS.gene054413:intron 30.0%
CAAATGAAGCATAACAAGTA+GGG + chr7.4:4325367-4325386 None:intergenic 30.0%
CAACACTGAGATTTATGAAA+AGG - chr7.4:4328868-4328887 MS.gene054413:CDS 30.0%
CTTAAATTTACAATGTTCCC+CGG - chr7.4:4328561-4328580 MS.gene054413:intron 30.0%
CTTGAAAACATCTTAAAGGT+AGG - chr7.4:4328740-4328759 MS.gene054413:intron 30.0%
GCGAATTATAATGAGGAAAT+TGG + chr7.4:4327955-4327974 None:intergenic 30.0%
TAGTGGCATCTTGTAAATAA+AGG - chr7.4:4327015-4327034 MS.gene054413:intron 30.0%
TCAAATGAAGCATAACAAGT+AGG + chr7.4:4325368-4325387 None:intergenic 30.0%
TGAAAACATCTTAAAGGTAG+GGG - chr7.4:4328742-4328761 MS.gene054413:intron 30.0%
TGACAAAGCGAATTATAATG+AGG + chr7.4:4327962-4327981 None:intergenic 30.0%
TGATAATAACATGCAGTTTG+AGG - chr7.4:4325618-4325637 MS.gene054413:intron 30.0%
TTACTGATAGGCAAAAACAA+AGG + chr7.4:4326115-4326134 None:intergenic 30.0%
TTACTGTATGTTGTAGTTTG+AGG - chr7.4:4325930-4325949 MS.gene054413:intron 30.0%
TTCTATTGCTGCTAATCATA+AGG + chr7.4:4328096-4328115 None:intergenic 30.0%
! AATTTGTGGTTTGTATGTGA+AGG - chr7.4:4327044-4327063 MS.gene054413:intron 30.0%
! GATTTTCTACTTTACTACGT+TGG - chr7.4:4325053-4325072 MS.gene054413:CDS 30.0%
!! GTTTTATTGAGTTCTTGATG+AGG - chr7.4:4325816-4325835 MS.gene054413:intron 30.0%
!!! GATTTTGGTTTGTGTTAATG+GGG - chr7.4:4328165-4328184 MS.gene054413:CDS 30.0%
AAGAAAGCTTGCAAAAGAAG+AGG - chr7.4:4324926-4324945 MS.gene054413:CDS 35.0%
AAGTCCATTTGGTACACAAA+TGG - chr7.4:4326753-4326772 MS.gene054413:intron 35.0%
ACAGTTGGAAATATTGTCAC+TGG - chr7.4:4327667-4327686 MS.gene054413:intron 35.0%
AGATTAGATTGAACTGATGC+AGG + chr7.4:4324979-4324998 None:intergenic 35.0%
AGGAAATTTGTGCAATTGGA+CGG + chr7.4:4328018-4328037 None:intergenic 35.0%
AGGGCTTGAAAACATCTTAA+AGG - chr7.4:4328736-4328755 MS.gene054413:intron 35.0%
AGTCAGCAAAACAAAAAGAC+TGG + chr7.4:4327281-4327300 None:intergenic 35.0%
AGTCCATTTGGTACACAAAT+GGG - chr7.4:4326754-4326773 MS.gene054413:intron 35.0%
AGTGCAACAGAATATACACA+TGG + chr7.4:4328055-4328074 None:intergenic 35.0%
ATATTGCCTTGCAATAGTGT+TGG - chr7.4:4326393-4326412 MS.gene054413:CDS 35.0%
ATCAAGAGGTTCTTAAGAGA+AGG + chr7.4:4328230-4328249 None:intergenic 35.0%
ATCATTTGAATGGATGAGAC+TGG + chr7.4:4327401-4327420 None:intergenic 35.0%
ATGAGATAGATCACACTAGA+TGG + chr7.4:4326420-4326439 None:intergenic 35.0%
ATTGTGACAGTTTGTCTTGA+AGG - chr7.4:4328716-4328735 MS.gene054413:intron 35.0%
CAAAAAGACTGGTAAAACCA+AGG + chr7.4:4327270-4327289 None:intergenic 35.0%
CACACAGATGAGTAATTACA+AGG - chr7.4:4326711-4326730 MS.gene054413:intron 35.0%
CGGGGAACATTGTAAATTTA+AGG + chr7.4:4328563-4328582 None:intergenic 35.0%
CTTTATACCTGATCAAAAGC+AGG + chr7.4:4326654-4326673 None:intergenic 35.0%
GAAATTGATACTGCTGGATT+AGG - chr7.4:4325160-4325179 MS.gene054413:intron 35.0%
GCACTTTCATATCTTTCTGA+TGG - chr7.4:4327448-4327467 MS.gene054413:intron 35.0%
GCTTTGACAAATATAGCTTC+TGG - chr7.4:4325961-4325980 MS.gene054413:intron 35.0%
GGTGCAAATGACAAAATTCA+AGG - chr7.4:4327469-4327488 MS.gene054413:intron 35.0%
GTGATTGATGCCAGTATAAT+TGG - chr7.4:4328423-4328442 MS.gene054413:intron 35.0%
GTTTCTGAGCATAGAAAGTT+TGG + chr7.4:4326589-4326608 None:intergenic 35.0%
TAAAACCAACAAAATCACCG+GGG + chr7.4:4328581-4328600 None:intergenic 35.0%
TATTGCTGCTAATCATAAGG+AGG + chr7.4:4328093-4328112 None:intergenic 35.0%
TCTCATGAACAACTCAAGTA+TGG - chr7.4:4328531-4328550 MS.gene054413:intron 35.0%
TGAGAGGAAATTTGTGCAAT+TGG + chr7.4:4328022-4328041 None:intergenic 35.0%
TGCTGAGTTTGATATCAAGA+AGG - chr7.4:4328470-4328489 MS.gene054413:intron 35.0%
TGGAACATCTGAAAACACTA+AGG - chr7.4:4325981-4326000 MS.gene054413:intron 35.0%
TGGCATCTTGTAAATAAAGG+TGG - chr7.4:4327018-4327037 MS.gene054413:intron 35.0%
TGTTGTTATCATTCTGCAGT+TGG - chr7.4:4325558-4325577 MS.gene054413:CDS 35.0%
TTAAAGTTGAATCCACCAGA+AGG + chr7.4:4329004-4329023 None:intergenic 35.0%
TTGTGACAGTTTGTCTTGAA+GGG - chr7.4:4328717-4328736 MS.gene054413:intron 35.0%
TTGTTAATGAAGTTAACCGG+AGG - chr7.4:4326181-4326200 MS.gene054413:intron 35.0%
! ACAAAGGCACAAATTGCATA+AGG + chr7.4:4326099-4326118 None:intergenic 35.0%
! ATCAAGCACATGATTTGTGA+TGG + chr7.4:4328130-4328149 None:intergenic 35.0%
! TTTCGGAAGTTGCTTTCAAT+TGG - chr7.4:4325652-4325671 MS.gene054413:intron 35.0%
!! GTATGCTGTTTCTAGATTCT+AGG - chr7.4:4326259-4326278 MS.gene054413:intron 35.0%
!! TTTCAACATACAAGGTGTTG+AGG + chr7.4:4326915-4326934 None:intergenic 35.0%
!!! TCTTTTTAAAATTGGCCGAC+AGG - chr7.4:4328630-4328649 MS.gene054413:intron 35.0%
!!! TTTTGAAGCAAGTTGACCAA+AGG + chr7.4:4328450-4328469 None:intergenic 35.0%
AACAGCCTCTTGTGTATAAC+AGG - chr7.4:4327125-4327144 MS.gene054413:intron 40.0%
AACATCTTTCCTGTGTTGTG+TGG - chr7.4:4326449-4326468 MS.gene054413:intron 40.0%
AAGACTGGTAAAACCAAGGA+TGG + chr7.4:4327266-4327285 None:intergenic 40.0%
AAGATAATAACCTGCAGCTG+TGG + chr7.4:4325851-4325870 None:intergenic 40.0%
AAGCCCATTTGTGTACCAAA+TGG + chr7.4:4326760-4326779 None:intergenic 40.0%
ACAATTTCGAACATCACAGC+TGG - chr7.4:4328290-4328309 MS.gene054413:intron 40.0%
ACAGCCTCTTGTGTATAACA+GGG - chr7.4:4327126-4327145 MS.gene054413:intron 40.0%
ACATGTGAGTAGATCACACA+AGG + chr7.4:4328684-4328703 None:intergenic 40.0%
ACCTTGTAGCTACATACAGA+TGG + chr7.4:4325494-4325513 None:intergenic 40.0%
ACTAAGGTAGTAATTGAGGC+AGG - chr7.4:4325997-4326016 MS.gene054413:intron 40.0%
AGAAACTGTGAAGGAGATAG+TGG + chr7.4:4327992-4328011 None:intergenic 40.0%
AGACAAACTGTCACAATCCT+AGG + chr7.4:4328713-4328732 None:intergenic 40.0%
AGGATAACTTGGTTGAGATC+CGG - chr7.4:4324890-4324909 MS.gene054413:CDS 40.0%
AGTCAAGCTAAACATTCCTC+CGG + chr7.4:4326200-4326219 None:intergenic 40.0%
ATTCAAGGCGTAATTGAAGC+TGG - chr7.4:4327484-4327503 MS.gene054413:intron 40.0%
ATTGAGGAGGTTATACAAGC+TGG - chr7.4:4325782-4325801 MS.gene054413:intron 40.0%
CAATTTCGAACATCACAGCT+GGG - chr7.4:4328291-4328310 MS.gene054413:intron 40.0%
CACTATTATGCATGCAAGTG+AGG - chr7.4:4326297-4326316 MS.gene054413:CDS 40.0%
CATGTGAGTAGATCACACAA+GGG + chr7.4:4328683-4328702 None:intergenic 40.0%
CCTTGTAGCTACATACAGAT+GGG + chr7.4:4325493-4325512 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - chr7.4:4327157-4327176 MS.gene054413:intron 40.0%
CTAATTGTTAGCTCCATCCT+TGG - chr7.4:4327250-4327269 MS.gene054413:CDS 40.0%
CTCTTGTGTATAACAGGGTA+AGG - chr7.4:4327131-4327150 MS.gene054413:intron 40.0%
CTTACCCTGTTATACACAAG+AGG + chr7.4:4327133-4327152 None:intergenic 40.0%
GAAACTGTGAAGGAGATAGT+GGG + chr7.4:4327991-4328010 None:intergenic 40.0%
GAAATGATTGACGAAGCTGA+GGG - chr7.4:4328812-4328831 MS.gene054413:CDS 40.0%
GAATAAGCACAGAAGGAGAT+GGG + chr7.4:4327636-4327655 None:intergenic 40.0%
GACCAAAGGACCAATTATAC+TGG + chr7.4:4328436-4328455 None:intergenic 40.0%
GCAAGGAGCTTCACAAAAAT+TGG + chr7.4:4326030-4326049 None:intergenic 40.0%
GCAATCTCAAATGCTACATC+GGG - chr7.4:4328504-4328523 MS.gene054413:intron 40.0%
GCAGCTATGTTGTTCTTTAG+TGG - chr7.4:4326998-4327017 MS.gene054413:intron 40.0%
GCTTGTATAACCTCCTCAAT+CGG + chr7.4:4325782-4325801 None:intergenic 40.0%
GGCAATCTCAAATGCTACAT+CGG - chr7.4:4328503-4328522 MS.gene054413:intron 40.0%
TAAGAGAAGGAAGAACTCGA+TGG + chr7.4:4328217-4328236 None:intergenic 40.0%
TCATAAGGAGGAAAGAGACA+TGG + chr7.4:4328081-4328100 None:intergenic 40.0%
TCTCAATCAGGGTTCAACTT+TGG - chr7.4:4328956-4328975 MS.gene054413:CDS 40.0%
TGAAATGATTGACGAAGCTG+AGG - chr7.4:4328811-4328830 MS.gene054413:intron 40.0%
TGAAGATTCTCGAGACATAC+TGG - chr7.4:4328894-4328913 MS.gene054413:CDS 40.0%
TGCCAGTATAATTGGTCCTT+TGG - chr7.4:4328431-4328450 MS.gene054413:intron 40.0%
TGTGTTGTCATGTGACTGAA+AGG - chr7.4:4327082-4327101 MS.gene054413:intron 40.0%
TGTTCACGAACATCATCACT+AGG + chr7.4:4326057-4326076 None:intergenic 40.0%
TTGAGGCAACAACTCAGTTT+CGG - chr7.4:4325635-4325654 MS.gene054413:intron 40.0%
TTTCAGTCACATGACAACAC+AGG + chr7.4:4327083-4327102 None:intergenic 40.0%
! ACAGATTCAGGTTTGTGCAT+TGG - chr7.4:4328322-4328341 MS.gene054413:intron 40.0%
! CAGATTCAGGTTTGTGCATT+GGG - chr7.4:4328323-4328342 MS.gene054413:intron 40.0%
! TAGTGATGATGTTCGTGAAC+AGG - chr7.4:4326056-4326075 MS.gene054413:intron 40.0%
!! AAGATATGAAAGTGCCCAAC+AGG + chr7.4:4327443-4327462 None:intergenic 40.0%
AACATTTCCCAATGCCCACA+CGG + chr7.4:4326484-4326503 None:intergenic 45.0%
AAGTCTTGACTGATGCCTGT+TGG - chr7.4:4327425-4327444 MS.gene054413:intron 45.0%
ACACTCTCAAACTTCTGCAG+GGG - chr7.4:4326618-4326637 MS.gene054413:intron 45.0%
ACAGGTACCTGGTAAGTCAA+GGG - chr7.4:4328648-4328667 MS.gene054413:intron 45.0%
ACAGTAGAAGCTCAACAAGC+CGG + chr7.4:4327519-4327538 None:intergenic 45.0%
ACATGGCTGCAAGATATGAG+AGG + chr7.4:4328038-4328057 None:intergenic 45.0%
ACCTGATCAAAAGCAGGTTG+TGG + chr7.4:4326648-4326667 None:intergenic 45.0%
ACTGTCACAATCCTAGGATC+AGG + chr7.4:4328707-4328726 None:intergenic 45.0%
AGAACAAGATCACGGCATCT+AGG + chr7.4:4326519-4326538 None:intergenic 45.0%
AGAGCAGGAATAAGCACAGA+AGG + chr7.4:4327643-4327662 None:intergenic 45.0%
AGATGCCGTGATCTTGTTCT+CGG - chr7.4:4326519-4326538 MS.gene054413:intron 45.0%
AGCTCTGCGAGCATGAAAAA+GGG + chr7.4:4327232-4327251 None:intergenic 45.0%
AGTCCAGATTCCTGTAACCA+AGG + chr7.4:4325596-4325615 None:intergenic 45.0%
AGTCTTGACTGATGCCTGTT+GGG - chr7.4:4327426-4327445 MS.gene054413:intron 45.0%
ATATCAAGAAGGAAGCTGCC+TGG - chr7.4:4328481-4328500 MS.gene054413:intron 45.0%
ATCTCAAATGCTACATCGGG+TGG - chr7.4:4328507-4328526 MS.gene054413:intron 45.0%
CAATCAGGGTTCAACTTTGG+TGG - chr7.4:4328959-4328978 MS.gene054413:CDS 45.0%
CAGGTGATGCTTCTCAATCA+GGG - chr7.4:4328945-4328964 MS.gene054413:CDS 45.0%
CATCATCACTAGGAGAAGCA+AGG + chr7.4:4326047-4326066 None:intergenic 45.0%
CATGACCGAGAACAAGATCA+CGG + chr7.4:4326527-4326546 None:intergenic 45.0%
CCCATCTGTATGTAGCTACA+AGG - chr7.4:4325490-4325509 MS.gene054413:intron 45.0%
GACACTCTCAAACTTCTGCA+GGG - chr7.4:4326617-4326636 MS.gene054413:intron 45.0%
GATGGTCCAACACTATTGCA+AGG + chr7.4:4326402-4326421 None:intergenic 45.0%
GATTCTCGAGACATACTGGT+TGG - chr7.4:4328898-4328917 MS.gene054413:CDS 45.0%
GCGTACAATACACCAAATGG+TGG - chr7.4:4327156-4327175 MS.gene054413:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr7.4:4327153-4327172 MS.gene054413:intron 45.0%
GGAATAAGCACAGAAGGAGA+TGG + chr7.4:4327637-4327656 None:intergenic 45.0%
GGACGGTATAGAAACTGTGA+AGG + chr7.4:4328001-4328020 None:intergenic 45.0%
GGGGAAGCTGATAAAAATGC+CGG - chr7.4:4328761-4328780 MS.gene054413:intron 45.0%
GTATAACCTCCTCAATCGGT+GGG + chr7.4:4325778-4325797 None:intergenic 45.0%
TAATGCACCCTTGACTTACC+AGG + chr7.4:4328658-4328677 None:intergenic 45.0%
TACTCACATGTCCTGATCCT+AGG - chr7.4:4328693-4328712 MS.gene054413:intron 45.0%
TATCAAGAAGGAAGCTGCCT+GGG - chr7.4:4328482-4328501 MS.gene054413:intron 45.0%
TCATTCAATTGCGCCAACAG+AGG + chr7.4:4326561-4326580 None:intergenic 45.0%
TCTCAGTGTTGTCATGACTC+TGG + chr7.4:4328859-4328878 None:intergenic 45.0%
TGCAGGTTTAACCTGTAAGC+AGG + chr7.4:4327365-4327384 None:intergenic 45.0%
TGGGAACAAGCAACAGATTC+AGG - chr7.4:4328310-4328329 MS.gene054413:intron 45.0%
TGGTAGCTTAAGAACTGAGC+CGG + chr7.4:4327935-4327954 None:intergenic 45.0%
TGGTTGAGATCCGGAAGAAT+CGG - chr7.4:4324899-4324918 MS.gene054413:CDS 45.0%
TGTATAACCTCCTCAATCGG+TGG + chr7.4:4325779-4325798 None:intergenic 45.0%
TTGACTTACCAGGTACCTGT+CGG + chr7.4:4328648-4328667 None:intergenic 45.0%
TTTCTTCCCTCCGATTCTTC+CGG + chr7.4:4324912-4324931 None:intergenic 45.0%
! AACTAGCAGAGCTGATTCAC+CGG - chr7.4:4327913-4327932 MS.gene054413:intron 45.0%
! ATACACAAGAGGCTGTTTCC+AGG + chr7.4:4327122-4327141 None:intergenic 45.0%
! ATGTTCCCCGGTGATTTTGT+TGG - chr7.4:4328573-4328592 MS.gene054413:intron 45.0%
! GCTTGTTGAGCTTCTACTGT+GGG - chr7.4:4327519-4327538 MS.gene054413:intron 45.0%
! GTAGGGGTGTGCATAAAAAC+TGG + chr7.4:4325350-4325369 None:intergenic 45.0%
! GTTGTAGTTTGAGGCAGCAT+GGG - chr7.4:4325939-4325958 MS.gene054413:intron 45.0%
! TAGCTCTGCGAGCATGAAAA+AGG + chr7.4:4327233-4327252 None:intergenic 45.0%
! TGTAGCATTTGAGATTGCCC+AGG + chr7.4:4328502-4328521 None:intergenic 45.0%
! TGTTGTAGTTTGAGGCAGCA+TGG - chr7.4:4325938-4325957 MS.gene054413:intron 45.0%
! TTGCAAAAGAAGAGGCGTGA+AGG - chr7.4:4324934-4324953 MS.gene054413:CDS 45.0%
!! GAAGTTTGAGAGTGTCCATG+TGG + chr7.4:4326613-4326632 None:intergenic 45.0%
!! GTGAAGGAGATAGTGGGAAA+TGG + chr7.4:4327985-4328004 None:intergenic 45.0%
!! GTGTTAATGGGGTGCTTTTC+TGG - chr7.4:4328176-4328195 MS.gene054413:CDS 45.0%
!! ATTATTATTATTATAACTTA+TGG - chr7.4:4325314-4325333 MS.gene054413:CDS 5.0%
AAAATTGGCCGACAGGTACC+TGG - chr7.4:4328637-4328656 MS.gene054413:intron 50.0%
AAGGTCACGTGTTCAAGTCC+TGG - chr7.4:4327101-4327120 MS.gene054413:intron 50.0%
AGCATGAAAAAGGGGCAACC+CGG + chr7.4:4327223-4327242 None:intergenic 50.0%
ATTCCTGCTCTACGCACAGT+TGG - chr7.4:4327652-4327671 MS.gene054413:intron 50.0%
CAGATTCCTGTAACCAAGGC+TGG + chr7.4:4325592-4325611 None:intergenic 50.0%
CAGCCTTGGTTACAGGAATC+TGG - chr7.4:4325590-4325609 MS.gene054413:CDS 50.0%
CAGTGTTGTCATGACTCTGG+AGG + chr7.4:4328856-4328875 None:intergenic 50.0%
CCAGGTGATGCTTCTCAATC+AGG - chr7.4:4328944-4328963 MS.gene054413:CDS 50.0%
CGTGATCTTGTTCTCGGTCA+TGG - chr7.4:4326525-4326544 MS.gene054413:intron 50.0%
CTATGCTCAGAAACGCCACA+TGG - chr7.4:4326595-4326614 MS.gene054413:intron 50.0%
GACAGGTACCTGGTAAGTCA+AGG - chr7.4:4328647-4328666 MS.gene054413:intron 50.0%
GAGACGGAGAGAGGATAACT+TGG - chr7.4:4324879-4324898 MS.gene054413:CDS 50.0%
GATTGACGAAGCTGAGGGTT+TGG - chr7.4:4328817-4328836 MS.gene054413:CDS 50.0%
GCATCAAGAAGGAAGCTTGC+TGG - chr7.4:4328267-4328286 MS.gene054413:intron 50.0%
GCATGGAGGAAATCGTCTGT+AGG - chr7.4:4327834-4327853 MS.gene054413:CDS 50.0%
GCTCTGCGAGCATGAAAAAG+GGG + chr7.4:4327231-4327250 None:intergenic 50.0%
GGACACTCTCAAACTTCTGC+AGG - chr7.4:4326616-4326635 MS.gene054413:intron 50.0%
GGTTCGTCGGAATCGATACA+AGG - chr7.4:4324831-4324850 MS.gene054413:CDS 50.0%
GGTTTAACCTGTAAGCAGGC+AGG + chr7.4:4327361-4327380 None:intergenic 50.0%
GTTGAATCCACCAGAAGGCA+CGG + chr7.4:4328999-4329018 None:intergenic 50.0%
TAACCTGTAAGCAGGCAGGA+TGG + chr7.4:4327357-4327376 None:intergenic 50.0%
TAAGCACAGAAGGAGATGGG+TGG + chr7.4:4327633-4327652 None:intergenic 50.0%
TCGGAATCGATACAAGGTGG+CGG - chr7.4:4324837-4324856 MS.gene054413:CDS 50.0%
TCGTCGGAATCGATACAAGG+TGG - chr7.4:4324834-4324853 MS.gene054413:CDS 50.0%
TGAGATCCGGAAGAATCGGA+GGG - chr7.4:4324903-4324922 MS.gene054413:CDS 50.0%
TGGAGCTTTGCTTCCTCTGT+TGG - chr7.4:4326545-4326564 MS.gene054413:intron 50.0%
TTCCTGTAACCAAGGCTGGT+AGG + chr7.4:4325588-4325607 None:intergenic 50.0%
TTGAAGCTGGTGTCTGTAGC+CGG - chr7.4:4327497-4327516 MS.gene054413:intron 50.0%
TTGAGATCCGGAAGAATCGG+AGG - chr7.4:4324902-4324921 MS.gene054413:CDS 50.0%
TTTCCAACTGTGCGTAGAGC+AGG + chr7.4:4327658-4327677 None:intergenic 50.0%
! ATACAAGGTGGCGGTTGATG+CGG - chr7.4:4324846-4324865 MS.gene054413:CDS 50.0%
! GGAAGATTTTCCACAGCTGC+AGG - chr7.4:4325838-4325857 MS.gene054413:intron 50.0%
! TCTCGAGACATACTGGTTGG+AGG - chr7.4:4328901-4328920 MS.gene054413:CDS 50.0%
! TGGAGATGACTTGCAGACAC+AGG - chr7.4:4327687-4327706 MS.gene054413:intron 50.0%
!! CCTGATTGAGAAGCATCACC+TGG + chr7.4:4328947-4328966 None:intergenic 50.0%
!! CTCGATGGTTGATGATGACC+TGG + chr7.4:4328202-4328221 None:intergenic 50.0%
!! GATTGAGAAGCATCACCTGG+AGG + chr7.4:4328944-4328963 None:intergenic 50.0%
!! GCCACAACCTGCTTTTGATC+AGG - chr7.4:4326644-4326663 MS.gene054413:intron 50.0%
!! GGCTTGTTGAGCTTCTACTG+TGG - chr7.4:4327518-4327537 MS.gene054413:intron 50.0%
!! GTATCGATTCCGACGAACCT+CGG + chr7.4:4324830-4324849 None:intergenic 50.0%
!! TGGGCATTGGGAAATGTTGC+TGG - chr7.4:4326486-4326505 MS.gene054413:intron 50.0%
ACTGATGCAGGCATCTGCTG+AGG + chr7.4:4324967-4324986 None:intergenic 55.0%
ACTTGAGCTCCCGCATATGC+AGG + chr7.4:4327197-4327216 None:intergenic 55.0%
ATGCGGAAGAAGGTCGGAGA+CGG - chr7.4:4324863-4324882 MS.gene054413:CDS 55.0%
CACCTACCAGCCTTGGTTAC+AGG - chr7.4:4325583-4325602 MS.gene054413:CDS 55.0%
CCTGACAGTCCACACAACAC+AGG + chr7.4:4326461-4326480 None:intergenic 55.0%
CTACCATCCTGCCTGCTTAC+AGG - chr7.4:4327351-4327370 MS.gene054413:intron 55.0%
CTGGTTGGAGGAAGATGACG+AGG - chr7.4:4328913-4328932 MS.gene054413:CDS 55.0%
CTTGAGCTCCCGCATATGCA+GGG + chr7.4:4327196-4327215 None:intergenic 55.0%
GTTGGAACACCTACCAGCCT+TGG - chr7.4:4325576-4325595 MS.gene054413:CDS 55.0%
TAACGCAAACGCGAGAACCG+AGG - chr7.4:4324810-4324829 MS.gene054413:CDS 55.0%
TCGGTTCTCGCGTTTGCGTT+AGG + chr7.4:4324811-4324830 None:intergenic 55.0%
TGGATGAGACTGGCAAGTGC+AGG + chr7.4:4327391-4327410 None:intergenic 55.0%
! AGAACGTAGCCCACCGATTG+AGG - chr7.4:4325766-4325785 MS.gene054413:intron 55.0%
! AGAAGGCACGGCAGGAACAT+CGG + chr7.4:4328987-4329006 None:intergenic 55.0%
! CCTGTGTTGTGTGGACTGTC+AGG - chr7.4:4326458-4326477 MS.gene054413:intron 55.0%
! CGGTTGATGCGGAAGAAGGT+CGG - chr7.4:4324857-4324876 MS.gene054413:CDS 55.0%
!! AATGGGGTGCTTTTCTGGCC+AGG - chr7.4:4328181-4328200 MS.gene054413:CDS 55.0%
!! TCAATCGGTGGGCTACGTTC+TGG + chr7.4:4325767-4325786 None:intergenic 55.0%
ACGCGAGAACCGAGGTTCGT+CGG - chr7.4:4324818-4324837 MS.gene054413:CDS 60.0%
AGAAGGTCGGAGACGGAGAG+AGG - chr7.4:4324870-4324889 MS.gene054413:CDS 60.0%
ATGCGGGAGCTCAAGTGCAC+CGG - chr7.4:4327201-4327220 MS.gene054413:CDS 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr7.4:4327184-4327203 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr7.4:4327184-4327203 MS.gene054413:CDS 60.0%
GATGACGAGGCTATGCCTCC+AGG - chr7.4:4328926-4328945 MS.gene054413:CDS 60.0%
GATGTTCCTGCCGTGCCTTC+TGG - chr7.4:4328986-4329005 MS.gene054413:CDS 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr7.4:4327185-4327204 None:intergenic 60.0%
TGTCAGGCCGTGTGGGCATT+GGG - chr7.4:4326474-4326493 MS.gene054413:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr7.4:4327185-4327204 MS.gene054413:CDS 60.0%
! AATCCACCAGAAGGCACGGC+AGG + chr7.4:4328995-4329014 None:intergenic 60.0%
! ACGTAGCCCACCGATTGAGG+AGG - chr7.4:4325769-4325788 MS.gene054413:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr7.4:4327169-4327188 MS.gene054413:CDS 60.0%
! CTGGCAAGTGCAGGAAGTGC+AGG + chr7.4:4327382-4327401 None:intergenic 60.0%
! GTGGCGGTTGATGCGGAAGA+AGG - chr7.4:4324853-4324872 MS.gene054413:CDS 60.0%
! TGTGGACTGTCAGGCCGTGT+GGG - chr7.4:4326467-4326486 MS.gene054413:intron 60.0%
CGCATATGCAGGGTCCGGGA+AGG + chr7.4:4327186-4327205 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr7.4:4327171-4327190 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr7.4:4327190-4327209 None:intergenic 65.0%
CTGTCAGGCCGTGTGGGCAT+TGG - chr7.4:4326473-4326492 MS.gene054413:intron 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr7.4:4327191-4327210 None:intergenic 65.0%
GTTCCTGCCGTGCCTTCTGG+TGG - chr7.4:4328989-4329008 MS.gene054413:CDS 65.0%
TGCGGGAGCTCAAGTGCACC+GGG - chr7.4:4327202-4327221 MS.gene054413:CDS 65.0%
! GTGTGGACTGTCAGGCCGTG+TGG - chr7.4:4326466-4326485 MS.gene054413:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 4324796 4329027 4324796 ID=MS.gene054413
chr7.4 mRNA 4324796 4329027 4324796 ID=MS.gene054413.t1;Parent=MS.gene054413
chr7.4 exon 4328812 4329027 4328812 ID=MS.gene054413.t1.exon1;Parent=MS.gene054413.t1
chr7.4 CDS 4328812 4329027 4328812 ID=cds.MS.gene054413.t1;Parent=MS.gene054413.t1
chr7.4 exon 4328150 4328246 4328150 ID=MS.gene054413.t1.exon2;Parent=MS.gene054413.t1
chr7.4 CDS 4328150 4328246 4328150 ID=cds.MS.gene054413.t1;Parent=MS.gene054413.t1
chr7.4 exon 4327964 4328055 4327964 ID=MS.gene054413.t1.exon3;Parent=MS.gene054413.t1
chr7.4 CDS 4327964 4328055 4327964 ID=cds.MS.gene054413.t1;Parent=MS.gene054413.t1
chr7.4 exon 4327746 4327877 4327746 ID=MS.gene054413.t1.exon4;Parent=MS.gene054413.t1
chr7.4 CDS 4327746 4327877 4327746 ID=cds.MS.gene054413.t1;Parent=MS.gene054413.t1
chr7.4 exon 4327158 4327343 4327158 ID=MS.gene054413.t1.exon5;Parent=MS.gene054413.t1
chr7.4 CDS 4327158 4327343 4327158 ID=cds.MS.gene054413.t1;Parent=MS.gene054413.t1
chr7.4 exon 4326287 4326450 4326287 ID=MS.gene054413.t1.exon6;Parent=MS.gene054413.t1
chr7.4 CDS 4326287 4326450 4326287 ID=cds.MS.gene054413.t1;Parent=MS.gene054413.t1
chr7.4 exon 4326115 4326193 4326115 ID=MS.gene054413.t1.exon7;Parent=MS.gene054413.t1
chr7.4 CDS 4326115 4326193 4326115 ID=cds.MS.gene054413.t1;Parent=MS.gene054413.t1
chr7.4 exon 4325492 4325620 4325492 ID=MS.gene054413.t1.exon8;Parent=MS.gene054413.t1
chr7.4 CDS 4325492 4325620 4325492 ID=cds.MS.gene054413.t1;Parent=MS.gene054413.t1
chr7.4 exon 4325276 4325403 4325276 ID=MS.gene054413.t1.exon9;Parent=MS.gene054413.t1
chr7.4 CDS 4325276 4325403 4325276 ID=cds.MS.gene054413.t1;Parent=MS.gene054413.t1
chr7.4 exon 4324796 4325171 4324796 ID=MS.gene054413.t1.exon10;Parent=MS.gene054413.t1
chr7.4 CDS 4324796 4325171 4324796 ID=cds.MS.gene054413.t1;Parent=MS.gene054413.t1
Gene Sequence

>MS.gene054413

ATGTCGTATCGTCCTAACGCAAACGCGAGAACCGAGGTTCGTCGGAATCGATACAAGGTGGCGGTTGATGCGGAAGAAGGTCGGAGACGGAGAGAGGATAACTTGGTTGAGATCCGGAAGAATCGGAGGGAAGAAAGCTTGCAAAAGAAGAGGCGTGAAGGACTTCAACCTCAGCAGATGCCTGCATCAGTTCAATCTAATCTACTCGAGAAAAAGGTTAAGATTCTCTTGATCTCACTACTTTACTTGTTCTTTCCGATTTTCTACTTTACTACGTTGGATAAGTTATTAGGTTAATTGAGAAATTGATAATACTGGATTAGGTTAATTGCAATATATTGATAGTAGCGATTAGGTTAATTGAGAAATTGATACTGCTGGATTAGGTTAATTGCAATATTGATAGTAGTGATTAGTTTAATTGTAAAATTGATGATAGTAATTAGGTTAATTTTCCTGTTTATGTTGTTTTGATTCATTTGAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAACTTATGGTTCTTGTGATCCAGTTTTTATGCACACCCCTACTTGTTATGCTTCATTTGAGATTTAGCAGTGTTTGTTAATTTTAAGGGTTATAATATGATTATTATTATGATTCAAACATGTTCATGATATTCACTGGTTATATGCTGTGACTGTGTCTTTCCCATCTGTATGTAGCTACAAGGTTTGATTAATATTATGGTAGGTTATGAACTTGAAGTTTACTGAATTGTTGTTATCATTCTGCAGTTGGAACACCTACCAGCCTTGGTTACAGGAATCTGGACTGATGATAATAACATGCAGTTTGAGGCAACAACTCAGTTTCGGAAGTTGCTTTCAATTGGTTAGATATTGTTCTACGTAACTTTATTTTCATTCATTTTTTTGTATACAATTTTTTAAGGGACATTTGGTTAACAACTTTTATGTCTTACCAGAACGTAGCCCACCGATTGAGGAGGTTATACAAGCTGGTGTAGTTCCTCGTTTTATTGAGTTCTTGATGAGGGAAGATTTTCCACAGCTGCAGGTTATTATCTTCCTTGTTTTATTTTATGCAATAGATATTTATATTTATTTGTACATTGCACTGATTTTGTTTACTGTATGTTGTAGTTTGAGGCAGCATGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACTAAGGTAGTAATTGAGGCAGGTGCTGTACCAATTTTTGTGAAGCTCCTTGCTTCTCCTAGTGATGATGTTCGTGAACAGGTATGTTTACTTTATATACCTTATGCAATTTGTGCCTTTGTTTTTGCCTATCAGTAAAATTTATATGGTTTCTTACTTTTTATTGGGAGACACCCTTCTTTTTTTGTTAATGAAGTTAACCGGAGGAATGTTTAGCTTGACTAGACAACTTACTTGTTCACTTTGATTTTAGATTTGGTTTGTATGCTGTTTCTAGATTCTAGGTGTGATGTTTGCATGCACTATTATGCATGCAAGTGAGGTTGAGCTAAATGCATTTGCTTTGAGTTTATTTTTTTCTTTAACTTGTTGCTGAAGCTATGCACAAAAATGACGATATTGCCTTGCAATAGTGTTGGACCATCTAGTGTGATCTATCTCATCTGAAGTTTAACATCTTTCCTGTGTTGTGTGGACTGTCAGGCCGTGTGGGCATTGGGAAATGTTGCTGGAGATTCACCTAGATGCCGTGATCTTGTTCTCGGTCATGGAGCTTTGCTTCCTCTGTTGGCGCAATTGAATGAGCATGCCAAACTTTCTATGCTCAGAAACGCCACATGGACACTCTCAAACTTCTGCAGGGGAAAGCCACAACCTGCTTTTGATCAGGTATAAAGTTATGCATAATATTTCTAAAATAAGATTCATTACTTACACACAGATGAGTAATTACAAGGCTCTATATACACAAGTATAAAGTCCATTTGGTACACAAATGGGCTTATATATGCACGATACCTAGAACTTGAACAAGAAATTTTGGCACCTTTAATATTTGTTTATATCTGCTATTGTGAAATGAAATTTTTTTACTTGCTCCATTTGTTTGAATTTTCTTATTGCTATGTCTGCTTTCCTCAACACCTTGTATGTTGAAAAATTATCAAATTGCTTAATCTATGCTATAGTTTATATTGAAAAATTATGGTATTGCAGTGTGTGCAGCTATGTTGTTCTTTAGTGGCATCTTGTAAATAAAGGTGGTCAAATTTGTGGTTTGTATGTGAAGGCCATATTATTTAACCTGTGTTGTCATGTGACTGAAAGGTCACGTGTTCAAGTCCTGGAAACAGCCTCTTGTGTATAACAGGGTAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCATATGCGGGAGCTCAAGTGCACCGGGTTGCCCCTTTTTCATGCTCGCAGAGCTAATTGTTAGCTCCATCCTTGGTTTTACCAGTCTTTTTGTTTTGCTGACTCTACTATTTTAATGAGTAATAATTGATTCTTAATATCAGAGTTTATAACTCTACCATCCTGCCTGCTTACAGGTTAAACCTGCACTTCCTGCACTTGCCAGTCTCATCCATTCAAATGATGAAGAAGTCTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTGCAAATGACAAAATTCAAGGCGTAATTGAAGCTGGTGTCTGTAGCCGGCTTGTTGAGCTTCTACTGTGGGTATTCTGAATATCAAATTTAGCTGTTCAAAGTTGTTTCCCTTAGTTATTATGATGTGAAATTCTAATTATTATTTTGGTTTTGTTCAGCCACCCATCTCCTTCTGTGCTTATTCCTGCTCTACGCACAGTTGGAAATATTGTCACTGGAGATGACTTGCAGACACAGGTATTAAGTTCAAGAGTTTATTCTTTCATCTCTTATATACAGTAGTTAATTCTGCGATTTTGCACTAAGAGAAATAGTAATACACACTGGAGCTAGTGATTTAAGTTCTGAAATTAAAATTAAACGCATGGAGGAAATCGTCTGTAGGAAAAAACTGTTACACAAGTATATGAAATTCAGAAAATGCAGAAGTAGCAAGAGATAAACTAGCAGAGCTGATTCACCGGCTCAGTTCTTAAGCTACCAATTTCCTCATTATAATTCGCTTTGTCACCATTTCCCACTATCTCCTTCACAGTTTCTATACCGTCCAATTGCACAAATTTCCTCTCATATCTTGCAGCCATGTGTATATTCTGTTGCACTCTTCCATGTCTCTTTCCTCCTTATGATTAGCAGCAATAGAATTGATATAATGCCATCACAAATCATGTGCTTGATTATTATTTTACTTTTGATTTTGGTTTGTGTTAATGGGGTGCTTTTCTGGCCAGGTCATCATCAACCATCGAGTTCTTCCTTCTCTTAAGAACCTCTTGATTAATAGTTATAAAAAAAGCATCAAGAAGGAAGCTTGCTGGACAATTTCGAACATCACAGCTGGGAACAAGCAACAGATTCAGGTTTGTGCATTGGGATAATTAAAATCTGTGTTATCTTTGCATTTGGAGTACTTAATTTATATTTCTCTTGATTCTTGAAAATTTACAGGATGTGATTGATGCCAGTATAATTGGTCCTTTGGTCAACTTGCTTCAAAATGCTGAGTTTGATATCAAGAAGGAAGCTGCCTGGGCAATCTCAAATGCTACATCGGGTGGATCTCATGAACAACTCAAGTATGGAGAGATCCTTAAATTTACAATGTTCCCCGGTGATTTTGTTGGTTTTATAGCATTTTTTTTTTCCGAGATGTCATAATCTTTTTAAAATTGGCCGACAGGTACCTGGTAAGTCAAGGGTGCATTAAGCCCTTGTGTGATCTACTCACATGTCCTGATCCTAGGATTGTGACAGTTTGTCTTGAAGGGCTTGAAAACATCTTAAAGGTAGGGGAAGCTGATAAAAATGCCGGCATCACTGATGGCGTGAATCGGTATGCTGAAATGATTGACGAAGCTGAGGGTTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACTGAGATTTATGAAAAGGCTGTGAAGATTCTCGAGACATACTGGTTGGAGGAAGATGACGAGGCTATGCCTCCAGGTGATGCTTCTCAATCAGGGTTCAACTTTGGTGGCTCCGATGTTCCTGCCGTGCCTTCTGGTGGATTCAACTTTAACTAG

Protein sequence

>MS.gene054413.t1

MSYRPNANARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNRREESLQKKRREGLQPQQMPASVQSNLLEKKLEHLPALVTGIWTDDNNMQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFIEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIEAGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFDQVKPALPALASLIHSNDEEVLTDACWALSYLSDGANDKIQGVIEAGVCSRLVELLLHPSPSVLIPALRTVGNIVTGDDLQTQVIINHRVLPSLKNLLINSYKKSIKKEACWTISNITAGNKQQIQDVIDASIIGPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQLKYLVSQGCIKPLCDLLTCPDPRIVTVCLEGLENILKVGEADKNAGITDGVNRYAEMIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDEAMPPGDASQSGFNFGGSDVPAVPSGGFNFN