Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31628.t1 | XP_013465700.1 | 90.1 | 292 | 27 | 1 | 1 | 292 | 1 | 290 | 4.30E-109 | 404.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31628.t1 | Q9LV09 | 59.4 | 313 | 97 | 3 | 1 | 292 | 1 | 304 | 1.5e-73 | 277.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31628.t1 | A0A072VDR8 | 90.1 | 292 | 27 | 1 | 1 | 292 | 1 | 290 | 3.1e-109 | 404.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene31628 | 0.800224 | 1.59E-48 | -1.69E-46 |
| MS.gene049159 | MS.gene31628 | 0.808292 | 3.33E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene31628 | 0.817173 | 3.78E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene31628 | 0.806276 | 8.90E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31628.t1 | MTR_1g008195 | 91.438 | 292 | 23 | 1 | 1 | 292 | 1 | 290 | 1.38e-176 | 489 |
| MS.gene31628.t1 | MTR_1g008170 | 89.041 | 292 | 28 | 2 | 1 | 291 | 1 | 289 | 9.90e-169 | 469 |
| MS.gene31628.t1 | MTR_1g008200 | 74.441 | 313 | 41 | 4 | 1 | 292 | 1 | 295 | 8.15e-155 | 434 |
| MS.gene31628.t1 | MTR_6g065550 | 56.303 | 119 | 48 | 1 | 12 | 130 | 50 | 164 | 1.38e-30 | 113 |
| MS.gene31628.t1 | MTR_3g463620 | 32.184 | 87 | 58 | 1 | 135 | 221 | 49 | 134 | 1.07e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31628.t1 | AT5G53400 | 56.446 | 287 | 102 | 3 | 28 | 292 | 19 | 304 | 4.27e-106 | 311 |
| MS.gene31628.t1 | AT4G27890 | 51.792 | 307 | 119 | 5 | 1 | 292 | 1 | 293 | 6.56e-104 | 305 |
| MS.gene31628.t1 | AT5G58740 | 24.684 | 158 | 83 | 3 | 135 | 292 | 21 | 142 | 2.85e-13 | 66.6 |
Find 73 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCATCATTTCCTGTTTC+TGG | 0.047505 | 1.1:+11262420 | None:intergenic |
| CAGCAGCCTTTGCTTTCTCC+TGG | 0.237418 | 1.1:+11264392 | None:intergenic |
| TAAAAGCTTACATCGATAAT+TGG | 0.243834 | 1.1:+11263170 | None:intergenic |
| TCAAGCCTGATGAGTGTTAT+TGG | 0.254984 | 1.1:-11262953 | MS.gene31628:CDS |
| TCACCAAGTTTGCTGCTTGC+AGG | 0.268788 | 1.1:+11262711 | None:intergenic |
| TCCATACCATTACCCTGATT+TGG | 0.307249 | 1.1:+11263329 | None:intergenic |
| AACCCTGACTTTGTTCCGTT+TGG | 0.312642 | 1.1:+11263248 | None:intergenic |
| CCAGTCCATTTGATCATGTT+TGG | 0.344810 | 1.1:+11262785 | None:intergenic |
| TCAGGGTAATGGTATGGATT+TGG | 0.349921 | 1.1:-11263324 | MS.gene31628:CDS |
| GACTTTGTTCCGTTTGGAAC+CGG | 0.353735 | 1.1:+11263254 | None:intergenic |
| TGATCAGAGACAGAAGTCTA+TGG | 0.357682 | 1.1:-11262465 | MS.gene31628:CDS |
| ATAATGAACAGCTCCAAATC+AGG | 0.379318 | 1.1:-11263342 | MS.gene31628:intron |
| TTCTGGATCTCCTCACTTGT+AGG | 0.392010 | 1.1:+11262437 | None:intergenic |
| GTTCCAAACGGAACAAAGTC+AGG | 0.412328 | 1.1:-11263251 | MS.gene31628:CDS |
| AAGTACCGATTTCTTCGATA+AGG | 0.413324 | 1.1:-11264506 | MS.gene31628:CDS |
| TTCAACAGTCATTCGAGTCT+CGG | 0.416166 | 1.1:+11262680 | None:intergenic |
| TTTAACCAAACATGATCAAA+TGG | 0.416509 | 1.1:-11262790 | MS.gene31628:CDS |
| GATGAAGAAATTTATGAGTC+AGG | 0.419120 | 1.1:-11262405 | MS.gene31628:intron |
| CATCCTGACATGGACTTCTC+TGG | 0.424989 | 1.1:-11262216 | MS.gene31628:CDS |
| AGCAGCCTTTGCTTTCTCCT+GGG | 0.425318 | 1.1:+11264393 | None:intergenic |
| CGATTTCTTCGATAAGGATT+CGG | 0.425329 | 1.1:-11264500 | MS.gene31628:CDS |
| AAGAAGAATCATCTAAAAGT+TGG | 0.434596 | 1.1:-11263209 | MS.gene31628:CDS |
| GCGGCTACGGAGAAGAAAGA+TGG | 0.442023 | 1.1:-11264337 | MS.gene31628:CDS |
| TGGATTTGGAGAAATATTCC+TGG | 0.442549 | 1.1:-11263310 | MS.gene31628:CDS |
| AAGTGAGGAGATCCAGAAAC+AGG | 0.451828 | 1.1:-11262432 | MS.gene31628:CDS |
| CATCTAAAAGTTGGACTCAA+AGG | 0.451985 | 1.1:-11263200 | MS.gene31628:CDS |
| AGAGCTCAATGTGAATGTTC+CGG | 0.460495 | 1.1:-11263273 | MS.gene31628:CDS |
| GAACCTGCAAGCAGCAAACT+TGG | 0.460687 | 1.1:-11262714 | MS.gene31628:CDS |
| TGGTGGAAATGTTTGGTAAA+GGG | 0.468624 | 1.1:-11262765 | MS.gene31628:CDS |
| AGGATCAAAGGTGGAAGAGA+AGG | 0.468710 | 1.1:+11264579 | None:intergenic |
| GAAGGCTAAGATTGCTGCCC+AGG | 0.476145 | 1.1:-11264410 | MS.gene31628:CDS |
| GGCAGCAATCTTAGCCTTCT+CGG | 0.476835 | 1.1:+11264414 | None:intergenic |
| GATGGGGACAGTAGCTTAGC+AGG | 0.477158 | 1.1:-11264319 | MS.gene31628:intron |
| CGAATCCTTATCGAAGAAAT+CGG | 0.478668 | 1.1:+11264501 | None:intergenic |
| AAATTGAATGATGAGAAGTC+CGG | 0.481592 | 1.1:-11264361 | MS.gene31628:CDS |
| AATGGACTGGTGGAAATGTT+TGG | 0.486706 | 1.1:-11262772 | MS.gene31628:CDS |
| TGAGAAGTCCGGGGCGGCTA+CGG | 0.492072 | 1.1:-11264350 | MS.gene31628:CDS |
| TTTCTTCTCCGTAGCCGCCC+CGG | 0.496207 | 1.1:+11264342 | None:intergenic |
| GGATCAAAGGTGGAAGAGAA+GGG | 0.498377 | 1.1:+11264580 | None:intergenic |
| ATGCTCCAATAACACTCATC+AGG | 0.499520 | 1.1:+11262948 | None:intergenic |
| ATCTAAAAGTTGGACTCAAA+GGG | 0.501362 | 1.1:-11263199 | MS.gene31628:CDS |
| TCATTCGAGTCTCGGAATCC+AGG | 0.505594 | 1.1:+11262688 | None:intergenic |
| CGATAAGGATTCGGCTGAGA+AGG | 0.507447 | 1.1:-11264491 | MS.gene31628:CDS |
| CTCTTGCAAAGTTTGAGTCC+AGG | 0.509156 | 1.1:+11263292 | None:intergenic |
| AATTGAATGATGAGAAGTCC+GGG | 0.511606 | 1.1:-11264360 | MS.gene31628:CDS |
| CTGGTGGAAATGTTTGGTAA+AGG | 0.515320 | 1.1:-11262766 | MS.gene31628:CDS |
| GCACCAGAGAAGTCCATGTC+AGG | 0.524536 | 1.1:+11262213 | None:intergenic |
| ACAGCTCCAAATCAGGGTAA+TGG | 0.526731 | 1.1:-11263335 | MS.gene31628:intron |
| GTCCGCAGTTCGCGCTGCGA+AGG | 0.537892 | 1.1:-11264461 | MS.gene31628:CDS |
| AAGCTTACATCGATAATTGG+AGG | 0.545241 | 1.1:+11263173 | None:intergenic |
| TAAGGCTGTTGCTGCCGAGA+AGG | 0.545266 | 1.1:-11264428 | MS.gene31628:CDS |
| GATGAGTGTTATTGGAGCAT+AGG | 0.546695 | 1.1:-11262945 | MS.gene31628:intron |
| GTGAATGTTCCGGTTCCAAA+CGG | 0.553425 | 1.1:-11263263 | MS.gene31628:CDS |
| AACATGATCAAATGGACTGG+TGG | 0.555566 | 1.1:-11262782 | MS.gene31628:CDS |
| TCCAAATCAGGGTAATGGTA+TGG | 0.555683 | 1.1:-11263330 | MS.gene31628:CDS |
| GGTATTCGACTTCATCGCTA+AGG | 0.565243 | 1.1:-11264530 | MS.gene31628:CDS |
| CCAAACATGATCAAATGGAC+TGG | 0.571634 | 1.1:-11262785 | MS.gene31628:CDS |
| CGGCTACGGAGAAGAAAGAT+GGG | 0.575360 | 1.1:-11264336 | MS.gene31628:CDS |
| GGATCTCCTCACTTGTAGGA+AGG | 0.575547 | 1.1:+11262441 | None:intergenic |
| TAATGAACAGCTCCAAATCA+GGG | 0.581640 | 1.1:-11263341 | MS.gene31628:intron |
| GATCAGAGACAGAAGTCTAT+GGG | 0.583072 | 1.1:-11262464 | MS.gene31628:CDS |
| AATGACTGTTGAAAAGATGA+TGG | 0.590301 | 1.1:-11262670 | MS.gene31628:intron |
| TACCTTCGCAGCGCGAACTG+CGG | 0.595284 | 1.1:+11264459 | None:intergenic |
| AAGCAGCAAACTTGGTGACC+TGG | 0.595433 | 1.1:-11262706 | MS.gene31628:CDS |
| TAAGGATTCGGCTGAGAAGG+TGG | 0.600166 | 1.1:-11264488 | MS.gene31628:CDS |
| TTCCAAACGGAACAAAGTCA+GGG | 0.605077 | 1.1:-11263250 | MS.gene31628:CDS |
| AAAGGTGGAAGAGAAGGGAA+TGG | 0.622919 | 1.1:+11264585 | None:intergenic |
| TGCGAAGGTAAAGAAAGCTA+AGG | 0.626358 | 1.1:-11264446 | MS.gene31628:CDS |
| TGCTGCCCAGGAGAAAGCAA+AGG | 0.643576 | 1.1:-11264398 | MS.gene31628:CDS |
| TATGGGCCTTCCTACAAGTG+AGG | 0.668307 | 1.1:-11262447 | MS.gene31628:CDS |
| ATTGAATGATGAGAAGTCCG+GGG | 0.731322 | 1.1:-11264359 | MS.gene31628:CDS |
| GAATGATGAGAAGTCCGGGG+CGG | 0.741329 | 1.1:-11264356 | MS.gene31628:CDS |
| GGCTACGGAGAAGAAAGATG+GGG | 0.743991 | 1.1:-11264335 | MS.gene31628:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAATAAAAAAATAACT+AGG | + | chr1.1:11262599-11262618 | None:intergenic | 10.0% |
| !! | AACAAATAAAAAAATAACTA+GGG | + | chr1.1:11262598-11262617 | None:intergenic | 10.0% |
| !! | TTAATTGTTTATTAATTTCA+TGG | - | chr1.1:11262800-11262819 | MS.gene31628:CDS | 10.0% |
| !!! | GATTTGATACTTTTAAATTT+TGG | - | chr1.1:11263991-11264010 | MS.gene31628:intron | 15.0% |
| !! | TAGTAACAAATAACACTAAA+TGG | - | chr1.1:11263454-11263473 | MS.gene31628:intron | 20.0% |
| !! | TTTATGAATGATAACAATTG+TGG | - | chr1.1:11262715-11262734 | MS.gene31628:CDS | 20.0% |
| !!! | ATCATGATTTTAAATTTCCT+AGG | - | chr1.1:11263870-11263889 | MS.gene31628:intron | 20.0% |
| !!! | TCATGATTTTAAATTTCCTA+GGG | - | chr1.1:11263871-11263890 | MS.gene31628:intron | 20.0% |
| !!! | TCATTCGCTTATTAATTTTT+AGG | + | chr1.1:11262898-11262917 | None:intergenic | 20.0% |
| !!! | TTTCATGGTTTTTATTGTAA+TGG | - | chr1.1:11262815-11262834 | MS.gene31628:CDS | 20.0% |
| ! | AAACATTTGTGAGATTCTTT+CGG | - | chr1.1:11264504-11264523 | MS.gene31628:CDS | 25.0% |
| ! | AAGAAGAATCATCTAAAAGT+TGG | - | chr1.1:11263655-11263674 | MS.gene31628:intron | 25.0% |
| ! | AAGAGTTAAGTGATATAGAA+TGG | + | chr1.1:11263419-11263438 | None:intergenic | 25.0% |
| ! | ATATATTCGCAGTTACTATT+GGG | - | chr1.1:11263724-11263743 | MS.gene31628:intron | 25.0% |
| ! | CTGTTCATTATAAAGAACTA+AGG | + | chr1.1:11263513-11263532 | None:intergenic | 25.0% |
| ! | GAATTATGGTCACATAAAAA+AGG | + | chr1.1:11263964-11263983 | None:intergenic | 25.0% |
| ! | GATACAATGATCTATACATT+TGG | - | chr1.1:11263142-11263161 | MS.gene31628:intron | 25.0% |
| ! | GTCTTGACTAATTAAATTTG+TGG | - | chr1.1:11264265-11264284 | MS.gene31628:intron | 25.0% |
| ! | TAAAAGCTTACATCGATAAT+TGG | + | chr1.1:11263697-11263716 | None:intergenic | 25.0% |
| ! | TAAAGTTATCCAAATGATGA+TGG | - | chr1.1:11263359-11263378 | MS.gene31628:intron | 25.0% |
| ! | TACAGAATGAAAGACAAATT+AGG | + | chr1.1:11263807-11263826 | None:intergenic | 25.0% |
| ! | TATATATTCGCAGTTACTAT+TGG | - | chr1.1:11263723-11263742 | MS.gene31628:intron | 25.0% |
| ! | TTTAACCAAACATGATCAAA+TGG | - | chr1.1:11264074-11264093 | MS.gene31628:intron | 25.0% |
| !! | ATGATTTTAAATTTCCTAGG+GGG | - | chr1.1:11263873-11263892 | MS.gene31628:intron | 25.0% |
| !! | CATGATTTTAAATTTCCTAG+GGG | - | chr1.1:11263872-11263891 | MS.gene31628:intron | 25.0% |
| !! | GTTATCAACTTTGCATTTTA+AGG | - | chr1.1:11263476-11263495 | MS.gene31628:intron | 25.0% |
| !!! | AAGGATTGTTTTTACTAGTA+GGG | - | chr1.1:11264345-11264364 | MS.gene31628:CDS | 25.0% |
| !!! | AGAAGATGATGATGAATTTT+TGG | + | chr1.1:11262240-11262259 | None:intergenic | 25.0% |
| !!! | AGATTTAGATAGTGTTGTTT+TGG | - | chr1.1:11264315-11264334 | MS.gene31628:intron | 25.0% |
| !!! | ATGATGATGAATTTTTGGTT+TGG | + | chr1.1:11262235-11262254 | None:intergenic | 25.0% |
| !!! | CTCATCATTCAATTTTTTCT+CGG | + | chr1.1:11262498-11262517 | None:intergenic | 25.0% |
| !!! | GATTTCATTGTCTTTTTTGT+TGG | - | chr1.1:11263385-11263404 | MS.gene31628:intron | 25.0% |
| !!! | TAAAAGTATCAAATCCATCA+TGG | + | chr1.1:11263986-11264005 | None:intergenic | 25.0% |
| !!! | TAAGGATTGTTTTTACTAGT+AGG | - | chr1.1:11264344-11264363 | MS.gene31628:CDS | 25.0% |
| AAATTGAATGATGAGAAGTC+CGG | - | chr1.1:11262503-11262522 | MS.gene31628:intron | 30.0% | |
| AACAAACAGTATCAAATCCA+TGG | + | chr1.1:11263198-11263217 | None:intergenic | 30.0% | |
| AATGACTGTTGAAAAGATGA+TGG | - | chr1.1:11264194-11264213 | MS.gene31628:intron | 30.0% | |
| AATGGAGAATCATAGAAAGT+AGG | - | chr1.1:11262833-11262852 | MS.gene31628:intron | 30.0% | |
| ATCTAAAAGTTGGACTCAAA+GGG | - | chr1.1:11263665-11263684 | MS.gene31628:intron | 30.0% | |
| GATGAAGAAATTTATGAGTC+AGG | - | chr1.1:11264459-11264478 | MS.gene31628:CDS | 30.0% | |
| GCAATAACCGTTTAAATACT+AGG | - | chr1.1:11263243-11263262 | MS.gene31628:CDS | 30.0% | |
| TCAAATCCATCATGGAATTA+TGG | + | chr1.1:11263978-11263997 | None:intergenic | 30.0% | |
| TGTTTACGTCAATAGATCAA+CGG | + | chr1.1:11264489-11264508 | None:intergenic | 30.0% | |
| TTTGAAAACTATGTTTGCAG+AGG | - | chr1.1:11264029-11264048 | MS.gene31628:intron | 30.0% | |
| !! | ACTGTTTGTTGAGTGAATTT+TGG | - | chr1.1:11263208-11263227 | MS.gene31628:CDS | 30.0% |
| !!! | ACTTTTTGGGTGTTAATTAG+AGG | + | chr1.1:11264129-11264148 | None:intergenic | 30.0% |
| !!! | GTGTTGTTTTGGAGTTTTTA+AGG | - | chr1.1:11264326-11264345 | MS.gene31628:CDS | 30.0% |
| AAGCTTACATCGATAATTGG+AGG | + | chr1.1:11263694-11263713 | None:intergenic | 35.0% | |
| AATTGAATGATGAGAAGTCC+GGG | - | chr1.1:11262504-11262523 | MS.gene31628:intron | 35.0% | |
| ACAAATGTCAAAGTCTCTTG+GGG | + | chr1.1:11263271-11263290 | None:intergenic | 35.0% | |
| ACACAAATGTCAAAGTCTCT+TGG | + | chr1.1:11263273-11263292 | None:intergenic | 35.0% | |
| ACAGTATCAAATCCATGGTT+CGG | + | chr1.1:11263193-11263212 | None:intergenic | 35.0% | |
| ATAATGAACAGCTCCAAATC+AGG | - | chr1.1:11263522-11263541 | MS.gene31628:intron | 35.0% | |
| ATCTAAATCTGTCTGTCACA+AGG | + | chr1.1:11264305-11264324 | None:intergenic | 35.0% | |
| ATGTCATCCATCATAAGTGT+CGG | - | chr1.1:11262965-11262984 | MS.gene31628:CDS | 35.0% | |
| ATGTGACCATAATTCCATGA+TGG | - | chr1.1:11263969-11263988 | MS.gene31628:intron | 35.0% | |
| CACAAATGTCAAAGTCTCTT+GGG | + | chr1.1:11263272-11263291 | None:intergenic | 35.0% | |
| CATCTAAAAGTTGGACTCAA+AGG | - | chr1.1:11263664-11263683 | MS.gene31628:intron | 35.0% | |
| CGAATCCTTATCGAAGAAAT+CGG | + | chr1.1:11262366-11262385 | None:intergenic | 35.0% | |
| CGATTTCTTCGATAAGGATT+CGG | - | chr1.1:11262364-11262383 | MS.gene31628:intron | 35.0% | |
| CTTAACTCTTCATTAGCTAC+TGG | - | chr1.1:11263429-11263448 | MS.gene31628:intron | 35.0% | |
| TAATGAACAGCTCCAAATCA+GGG | - | chr1.1:11263523-11263542 | MS.gene31628:intron | 35.0% | |
| TCTTCATCATTTCCTGTTTC+TGG | + | chr1.1:11264447-11264466 | None:intergenic | 35.0% | |
| TGAATGATAACAATTGTGGC+TGG | - | chr1.1:11262719-11262738 | MS.gene31628:CDS | 35.0% | |
| TGGATTTGGAGAAATATTCC+TGG | - | chr1.1:11263554-11263573 | MS.gene31628:intron | 35.0% | |
| TGGGGTTCCTAGTATTTAAA+CGG | + | chr1.1:11263253-11263272 | None:intergenic | 35.0% | |
| TGGTGGAAATGTTTGGTAAA+GGG | - | chr1.1:11264099-11264118 | MS.gene31628:intron | 35.0% | |
| ! | TGACGAAGAGCTAGAATTTT+AGG | - | chr1.1:11263088-11263107 | MS.gene31628:intron | 35.0% |
| !! | AAGAGCTAGAATTTTAGGAG+TGG | - | chr1.1:11263093-11263112 | MS.gene31628:intron | 35.0% |
| !! | AAGTACCGATTTCTTCGATA+AGG | - | chr1.1:11262358-11262377 | MS.gene31628:intron | 35.0% |
| !! | ACCAACTGCTTTTCTTGAAA+AGG | - | chr1.1:11262313-11262332 | MS.gene31628:intron | 35.0% |
| !! | ACCTTTTCAAGAAAAGCAGT+TGG | + | chr1.1:11262317-11262336 | None:intergenic | 35.0% |
| !! | AGAGCTAGAATTTTAGGAGT+GGG | - | chr1.1:11263094-11263113 | MS.gene31628:intron | 35.0% |
| !! | GGAATGGTTTTTGAAGGTTT+TGG | + | chr1.1:11262266-11262285 | None:intergenic | 35.0% |
| !! | TATCGTGATTTGTTGATGCA+TGG | + | chr1.1:11263014-11263033 | None:intergenic | 35.0% |
| !! | TCTAATTTGATGATGCGTGA+TGG | - | chr1.1:11263313-11263332 | MS.gene31628:CDS | 35.0% |
| !! | TTGGTTTTCGTCTTGGTAAT+CGG | + | chr1.1:11262216-11262235 | None:intergenic | 35.0% |
| !!! | AGAAAAGCAGTTGGTTTTGA+AGG | + | chr1.1:11262308-11262327 | None:intergenic | 35.0% |
| !!! | AGTTGGTTTTGAAGGATCAA+AGG | + | chr1.1:11262300-11262319 | None:intergenic | 35.0% |
| !!! | TTTTGGTTTGGTTTTCGTCT+TGG | + | chr1.1:11262223-11262242 | None:intergenic | 35.0% |
| AGAGCTCAATGTGAATGTTC+CGG | - | chr1.1:11263591-11263610 | MS.gene31628:intron | 40.0% | |
| ATGCTCCAATAACACTCATC+AGG | + | chr1.1:11263919-11263938 | None:intergenic | 40.0% | |
| ATTGAATGATGAGAAGTCCG+GGG | - | chr1.1:11262505-11262524 | MS.gene31628:intron | 40.0% | |
| CACGCATCATCAAATTAGAG+AGG | + | chr1.1:11263312-11263331 | None:intergenic | 40.0% | |
| CCAAACATGATCAAATGGAC+TGG | - | chr1.1:11264079-11264098 | MS.gene31628:intron | 40.0% | |
| CCAGTCCATTTGATCATGTT+TGG | + | chr1.1:11264082-11264101 | None:intergenic | 40.0% | |
| CTACGATGTCTAACATGTGT+AGG | + | chr1.1:11262945-11262964 | None:intergenic | 40.0% | |
| CTGGTGGAAATGTTTGGTAA+AGG | - | chr1.1:11264098-11264117 | MS.gene31628:intron | 40.0% | |
| GAAATCACGCCATCATCATT+TGG | + | chr1.1:11263371-11263390 | None:intergenic | 40.0% | |
| GAGCATAGGTATTAGACTTG+TGG | - | chr1.1:11263933-11263952 | MS.gene31628:intron | 40.0% | |
| GATCAGAGACAGAAGTCTAT+GGG | - | chr1.1:11264400-11264419 | MS.gene31628:CDS | 40.0% | |
| TATACTGTGATGAAGCTAGC+CGG | - | chr1.1:11263032-11263051 | MS.gene31628:intron | 40.0% | |
| TCAAGCCTGATGAGTGTTAT+TGG | - | chr1.1:11263911-11263930 | MS.gene31628:intron | 40.0% | |
| TCCATACCATTACCCTGATT+TGG | + | chr1.1:11263538-11263557 | None:intergenic | 40.0% | |
| TGATCAGAGACAGAAGTCTA+TGG | - | chr1.1:11264399-11264418 | MS.gene31628:CDS | 40.0% | |
| TGCGAAGGTAAAGAAAGCTA+AGG | - | chr1.1:11262418-11262437 | MS.gene31628:CDS | 40.0% | |
| TTCAACAGTCATTCGAGTCT+CGG | + | chr1.1:11264187-11264206 | None:intergenic | 40.0% | |
| TTCCAAACGGAACAAAGTCA+GGG | - | chr1.1:11263614-11263633 | MS.gene31628:intron | 40.0% | |
| ! | ATGAAGCTAGCCGGAATTTT+AGG | - | chr1.1:11263041-11263060 | MS.gene31628:intron | 40.0% |
| ! | GAGAAGGGAATGGTTTTTGA+AGG | + | chr1.1:11262272-11262291 | None:intergenic | 40.0% |
| ! | GATGAGTGTTATTGGAGCAT+AGG | - | chr1.1:11263919-11263938 | MS.gene31628:intron | 40.0% |
| ! | GCTTGCAGGTTCAACTTTTT+GGG | + | chr1.1:11264142-11264161 | None:intergenic | 40.0% |
| ! | TCAGGGTAATGGTATGGATT+TGG | - | chr1.1:11263540-11263559 | MS.gene31628:intron | 40.0% |
| ! | TCCAAATCAGGGTAATGGTA+TGG | - | chr1.1:11263534-11263553 | MS.gene31628:intron | 40.0% |
| ! | TGCTTGCAGGTTCAACTTTT+TGG | + | chr1.1:11264143-11264162 | None:intergenic | 40.0% |
| !! | AACATGATCAAATGGACTGG+TGG | - | chr1.1:11264082-11264101 | MS.gene31628:intron | 40.0% |
| !! | AATGGACTGGTGGAAATGTT+TGG | - | chr1.1:11264092-11264111 | MS.gene31628:intron | 40.0% |
| !! | GATTTGTTGATGCATGGTCT+AGG | + | chr1.1:11263008-11263027 | None:intergenic | 40.0% |
| !! | TATAGCACCGACACTTATGA+TGG | + | chr1.1:11262975-11262994 | None:intergenic | 40.0% |
| !!! | TGGTTTTGAAGGATCAAAGG+TGG | + | chr1.1:11262297-11262316 | None:intergenic | 40.0% |
| AAAGGTGGAAGAGAAGGGAA+TGG | + | chr1.1:11262282-11262301 | None:intergenic | 45.0% | |
| AACCCTGACTTTGTTCCGTT+TGG | + | chr1.1:11263619-11263638 | None:intergenic | 45.0% | |
| AAGTGAGGAGATCCAGAAAC+AGG | - | chr1.1:11264432-11264451 | MS.gene31628:CDS | 45.0% | |
| ACAGCTCCAAATCAGGGTAA+TGG | - | chr1.1:11263529-11263548 | MS.gene31628:intron | 45.0% | |
| AGATTTATACAGCTCCCCCT+AGG | + | chr1.1:11263890-11263909 | None:intergenic | 45.0% | |
| AGGATCAAAGGTGGAAGAGA+AGG | + | chr1.1:11262288-11262307 | None:intergenic | 45.0% | |
| CCTCTATCAAATCCGAACCA+TGG | - | chr1.1:11263178-11263197 | MS.gene31628:intron | 45.0% | |
| CTCTTGCAAAGTTTGAGTCC+AGG | + | chr1.1:11263575-11263594 | None:intergenic | 45.0% | |
| GGATCAAAGGTGGAAGAGAA+GGG | + | chr1.1:11262287-11262306 | None:intergenic | 45.0% | |
| GGTATTCGACTTCATCGCTA+AGG | - | chr1.1:11262334-11262353 | MS.gene31628:intron | 45.0% | |
| GTGAATGTTCCGGTTCCAAA+CGG | - | chr1.1:11263601-11263620 | MS.gene31628:intron | 45.0% | |
| GTTCCAAACGGAACAAAGTC+AGG | - | chr1.1:11263613-11263632 | MS.gene31628:intron | 45.0% | |
| GTTCGGATTTGATAGAGGAG+TGG | + | chr1.1:11263176-11263195 | None:intergenic | 45.0% | |
| TTCTGGATCTCCTCACTTGT+AGG | + | chr1.1:11264430-11264449 | None:intergenic | 45.0% | |
| TTGCCCCACTCCTAAAATTC+CGG | + | chr1.1:11263054-11263073 | None:intergenic | 45.0% | |
| ! | CCATGGTTCGGATTTGATAG+AGG | + | chr1.1:11263181-11263200 | None:intergenic | 45.0% |
| ! | GACTTTGTTCCGTTTGGAAC+CGG | + | chr1.1:11263613-11263632 | None:intergenic | 45.0% |
| ! | TGTTTTGCAGCATCCTGACA+TGG | - | chr1.1:11264638-11264657 | MS.gene31628:CDS | 45.0% |
| !! | CTAGCCGGAATTTTAGGAGT+GGG | - | chr1.1:11263047-11263066 | MS.gene31628:intron | 45.0% |
| !! | TAGCCGGAATTTTAGGAGTG+GGG | - | chr1.1:11263048-11263067 | MS.gene31628:intron | 45.0% |
| AGCAGCCTTTGCTTTCTCCT+GGG | + | chr1.1:11262474-11262493 | None:intergenic | 50.0% | |
| CATCCTGACATGGACTTCTC+TGG | - | chr1.1:11264648-11264667 | MS.gene31628:CDS | 50.0% | |
| CGATAAGGATTCGGCTGAGA+AGG | - | chr1.1:11262373-11262392 | MS.gene31628:intron | 50.0% | |
| CGGCTACGGAGAAGAAAGAT+GGG | - | chr1.1:11262528-11262547 | MS.gene31628:intron | 50.0% | |
| GAACCTGCAAGCAGCAAACT+TGG | - | chr1.1:11264150-11264169 | MS.gene31628:intron | 50.0% | |
| GGATCTCCTCACTTGTAGGA+AGG | + | chr1.1:11264426-11264445 | None:intergenic | 50.0% | |
| GGCTACGGAGAAGAAAGATG+GGG | - | chr1.1:11262529-11262548 | MS.gene31628:intron | 50.0% | |
| TAAGGATTCGGCTGAGAAGG+TGG | - | chr1.1:11262376-11262395 | MS.gene31628:intron | 50.0% | |
| TATGGGCCTTCCTACAAGTG+AGG | - | chr1.1:11264417-11264436 | MS.gene31628:CDS | 50.0% | |
| TCATTCGAGTCTCGGAATCC+AGG | + | chr1.1:11264179-11264198 | None:intergenic | 50.0% | |
| ! | AAGCAGCAAACTTGGTGACC+TGG | - | chr1.1:11264158-11264177 | MS.gene31628:intron | 50.0% |
| ! | GGCAGCAATCTTAGCCTTCT+CGG | + | chr1.1:11262453-11262472 | None:intergenic | 50.0% |
| !! | GCTAGCCGGAATTTTAGGAG+TGG | - | chr1.1:11263046-11263065 | MS.gene31628:intron | 50.0% |
| !! | TCACCAAGTTTGCTGCTTGC+AGG | + | chr1.1:11264156-11264175 | None:intergenic | 50.0% |
| CAGCAGCCTTTGCTTTCTCC+TGG | + | chr1.1:11262475-11262494 | None:intergenic | 55.0% | |
| GAAGGCTAAGATTGCTGCCC+AGG | - | chr1.1:11262454-11262473 | MS.gene31628:CDS | 55.0% | |
| GAATGATGAGAAGTCCGGGG+CGG | - | chr1.1:11262508-11262527 | MS.gene31628:intron | 55.0% | |
| GATGGGGACAGTAGCTTAGC+AGG | - | chr1.1:11262545-11262564 | MS.gene31628:intron | 55.0% | |
| GCACCAGAGAAGTCCATGTC+AGG | + | chr1.1:11264654-11264673 | None:intergenic | 55.0% | |
| GCGGCTACGGAGAAGAAAGA+TGG | - | chr1.1:11262527-11262546 | MS.gene31628:intron | 55.0% | |
| TAAGGCTGTTGCTGCCGAGA+AGG | - | chr1.1:11262436-11262455 | MS.gene31628:CDS | 55.0% | |
| TGCTGCCCAGGAGAAAGCAA+AGG | - | chr1.1:11262466-11262485 | MS.gene31628:CDS | 55.0% | |
| TACCTTCGCAGCGCGAACTG+CGG | + | chr1.1:11262408-11262427 | None:intergenic | 60.0% | |
| TTTCTTCTCCGTAGCCGCCC+CGG | + | chr1.1:11262525-11262544 | None:intergenic | 60.0% | |
| TGAGAAGTCCGGGGCGGCTA+CGG | - | chr1.1:11262514-11262533 | MS.gene31628:intron | 65.0% | |
| GTCCGCAGTTCGCGCTGCGA+AGG | - | chr1.1:11262403-11262422 | MS.gene31628:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 11262200 | 11264686 | 11262200 | ID=MS.gene31628 |
| chr1.1 | mRNA | 11262200 | 11264686 | 11262200 | ID=MS.gene31628.t1;Parent=MS.gene31628 |
| chr1.1 | exon | 11264320 | 11264686 | 11264320 | ID=MS.gene31628.t1.exon1;Parent=MS.gene31628.t1 |
| chr1.1 | CDS | 11264320 | 11264686 | 11264320 | ID=cds.MS.gene31628.t1;Parent=MS.gene31628.t1 |
| chr1.1 | exon | 11263181 | 11263353 | 11263181 | ID=MS.gene31628.t1.exon2;Parent=MS.gene31628.t1 |
| chr1.1 | CDS | 11263181 | 11263353 | 11263181 | ID=cds.MS.gene31628.t1;Parent=MS.gene31628.t1 |
| chr1.1 | exon | 11262946 | 11262994 | 11262946 | ID=MS.gene31628.t1.exon3;Parent=MS.gene31628.t1 |
| chr1.1 | CDS | 11262946 | 11262994 | 11262946 | ID=cds.MS.gene31628.t1;Parent=MS.gene31628.t1 |
| chr1.1 | exon | 11262671 | 11262837 | 11262671 | ID=MS.gene31628.t1.exon4;Parent=MS.gene31628.t1 |
| chr1.1 | CDS | 11262671 | 11262837 | 11262671 | ID=cds.MS.gene31628.t1;Parent=MS.gene31628.t1 |
| chr1.1 | exon | 11262406 | 11262489 | 11262406 | ID=MS.gene31628.t1.exon5;Parent=MS.gene31628.t1 |
| chr1.1 | CDS | 11262406 | 11262489 | 11262406 | ID=cds.MS.gene31628.t1;Parent=MS.gene31628.t1 |
| chr1.1 | exon | 11262200 | 11262238 | 11262200 | ID=MS.gene31628.t1.exon6;Parent=MS.gene31628.t1 |
| chr1.1 | CDS | 11262200 | 11262238 | 11262200 | ID=cds.MS.gene31628.t1;Parent=MS.gene31628.t1 |
| Gene Sequence |
| Protein sequence |
