AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31725

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31725.t1 MTR_1g026830 96.616 591 20 0 1 591 1 591 0.0 1172
MS.gene31725.t1 MTR_1g095810 94.301 579 32 1 14 591 11 589 0.0 1118
MS.gene31725.t1 MTR_2g100230 40.431 418 236 5 117 531 66 473 1.55e-99 311
MS.gene31725.t1 MTR_4g105100 41.147 401 223 5 134 531 189 579 6.96e-93 298
MS.gene31725.t1 MTR_3g083690 38.741 413 227 6 136 531 134 537 1.31e-92 297
MS.gene31725.t1 MTR_3g467550 37.376 404 231 5 111 500 77 472 9.57e-92 293
MS.gene31725.t1 MTR_7g109720 43.797 395 207 7 117 506 202 586 3.72e-91 298
MS.gene31725.t1 MTR_6g005550 39.416 411 231 7 126 531 144 541 8.59e-91 295
MS.gene31725.t1 MTR_1g054630 39.312 407 226 6 136 528 143 542 1.31e-90 292
MS.gene31725.t1 MTR_3g467550 37.250 400 206 6 111 500 77 441 3.21e-87 281
MS.gene31725.t1 MTR_4g134170 35.981 428 249 4 120 529 260 680 1.08e-86 284
MS.gene31725.t1 MTR_4g114120 38.049 410 230 6 138 530 131 533 4.01e-85 279
MS.gene31725.t1 MTR_6g005320 35.880 432 250 5 116 529 218 640 5.88e-85 278
MS.gene31725.t1 MTR_2g032630 39.806 412 230 7 125 531 474 872 1.33e-82 281
MS.gene31725.t1 MTR_2g007000 38.863 422 239 6 117 531 474 883 3.26e-82 279
MS.gene31725.t1 MTR_3g467550 35.356 379 223 5 111 475 77 447 2.67e-77 252
MS.gene31725.t1 MTR_5g027840 37.468 395 230 8 138 525 95 479 1.78e-76 252
MS.gene31725.t1 MTR_4g105100 40.181 331 186 4 134 461 189 510 4.38e-70 235
MS.gene31725.t1 MTR_5g090120 37.778 360 201 8 157 508 91 435 2.01e-63 219
MS.gene31725.t1 MTR_4g079320 33.498 406 246 7 148 543 20 411 3.20e-63 222
MS.gene31725.t1 MTR_6g082080 33.514 370 222 6 145 507 8 360 1.44e-62 213
MS.gene31725.t1 MTR_7g056830 33.514 370 222 6 145 507 8 360 2.23e-62 212
MS.gene31725.t1 MTR_3g449250 36.872 358 203 8 157 506 100 442 3.93e-62 215
MS.gene31725.t1 MTR_3g449250 36.872 358 203 8 157 506 100 442 6.51e-62 215
MS.gene31725.t1 MTR_6g033070 31.308 428 277 9 125 548 119 533 2.58e-61 212
MS.gene31725.t1 MTR_3g049990 35.342 365 216 6 147 504 152 503 6.73e-60 213
MS.gene31725.t1 MTR_7g100820 32.771 415 250 8 127 531 110 505 2.83e-59 208
MS.gene31725.t1 MTR_2g041140 34.072 361 223 4 147 502 141 491 3.91e-57 205
MS.gene31725.t1 MTR_2g039960 31.362 389 248 8 147 532 41 413 2.13e-56 196
MS.gene31725.t1 MTR_4g125970 31.362 389 248 8 147 532 41 413 4.39e-56 195
MS.gene31725.t1 MTR_4g125970 31.362 389 248 8 147 532 58 430 8.79e-56 194
MS.gene31725.t1 MTR_2g066050 33.333 369 217 7 147 504 53 403 1.41e-55 196
MS.gene31725.t1 MTR_2g438110 31.378 392 250 7 144 532 31 406 2.52e-55 192
MS.gene31725.t1 MTR_2g099620 30.769 390 251 8 146 532 24 397 2.56e-54 189
MS.gene31725.t1 MTR_2g099620 30.769 390 251 8 146 532 40 413 3.44e-54 190
MS.gene31725.t1 MTR_8g018400 30.077 389 253 8 147 532 41 413 2.10e-53 187
MS.gene31725.t1 MTR_4g112340 35.329 334 197 8 165 490 115 437 7.43e-53 190
MS.gene31725.t1 MTR_2g055850 31.044 364 236 6 144 501 88 442 3.17e-52 188
MS.gene31725.t1 MTR_3g071620 32.011 378 225 11 148 501 15 384 1.36e-50 184
MS.gene31725.t1 MTR_7g076820 28.306 431 279 7 104 532 118 520 2.06e-50 182
MS.gene31725.t1 MTR_7g076800 29.975 397 258 7 139 532 132 511 6.87e-50 181
MS.gene31725.t1 MTR_7g076830 28.211 436 273 8 104 532 111 513 8.80e-50 180
MS.gene31725.t1 MTR_2g043360 28.125 416 219 8 165 507 60 468 1.09e-49 182
MS.gene31725.t1 MTR_4g059460 29.024 410 211 9 165 501 63 465 1.25e-49 182
MS.gene31725.t1 MTR_6g056080 33.333 369 222 9 139 497 98 452 1.39e-49 183
MS.gene31725.t1 MTR_8g027780 34.239 368 214 9 148 495 102 461 4.11e-49 179
MS.gene31725.t1 MTR_1g102410 33.077 390 205 10 142 497 42 409 1.33e-48 179
MS.gene31725.t1 MTR_8g027775 32.642 386 227 11 135 495 80 457 7.74e-48 176
MS.gene31725.t1 MTR_4g010565 29.688 384 239 10 148 516 125 492 4.95e-46 170
MS.gene31725.t1 MTR_3g107420 29.805 359 235 7 148 502 48 393 5.31e-45 165
MS.gene31725.t1 MTR_1g012420 29.521 376 243 8 136 502 31 393 1.74e-44 164
MS.gene31725.t1 MTR_2g063080 27.685 419 246 7 139 505 101 514 1.17e-43 164
MS.gene31725.t1 MTR_6g039840 29.167 384 232 9 144 503 107 474 5.96e-43 164
MS.gene31725.t1 MTR_8g027770 33.240 358 206 9 158 495 212 556 3.33e-42 161
MS.gene31725.t1 MTR_5g092560 32.471 348 218 8 166 506 95 432 2.64e-41 159
MS.gene31725.t1 MTR_8g097000 32.778 360 217 10 158 501 299 649 5.40e-41 159
MS.gene31725.t1 MTR_1g061970 30.536 429 236 17 136 523 68 475 6.29e-41 155
MS.gene31725.t1 MTR_7g057250 28.125 448 244 12 148 525 164 603 5.53e-40 156
MS.gene31725.t1 MTR_8g027780 32.653 343 203 9 148 470 102 436 1.23e-38 148
MS.gene31725.t1 MTR_4g068990 30.563 373 238 11 143 507 73 432 5.27e-37 147
MS.gene31725.t1 MTR_1g083130 27.053 414 237 9 146 508 25 424 2.65e-36 144
MS.gene31725.t1 MTR_4g112320 34.874 238 144 6 261 490 21 255 6.90e-35 136
MS.gene31725.t1 MTR_3g118120 26.684 386 246 11 144 501 129 505 6.38e-34 136
MS.gene31725.t1 MTR_2g043360 27.329 322 161 6 259 507 29 350 3.97e-33 133
MS.gene31725.t1 MTR_4g049910 29.474 380 215 10 148 501 56 408 4.68e-33 132
MS.gene31725.t1 MTR_0915s0010 29.693 293 188 5 164 454 6 282 2.51e-32 126
MS.gene31725.t1 MTR_4g131750 27.586 435 245 14 139 532 74 479 8.51e-30 123
MS.gene31725.t1 MTR_1g046570 29.496 278 180 8 266 532 126 398 3.22e-29 120
MS.gene31725.t1 MTR_6g039840 29.276 304 176 8 223 503 11 298 4.97e-29 121
MS.gene31725.t1 MTR_5g069330 25.275 364 250 10 145 502 5 352 1.61e-28 118
MS.gene31725.t1 MTR_5g069330 25.275 364 250 10 145 502 1 348 1.61e-28 118
MS.gene31725.t1 MTR_4g459350 32.512 203 111 4 165 348 60 255 5.66e-26 108
MS.gene31725.t1 MTR_8g018370 24.100 361 230 7 177 532 3 324 7.65e-25 105
MS.gene31725.t1 MTR_4g077370 35.238 210 109 7 147 348 250 440 1.95e-24 107
MS.gene31725.t1 MTR_4g077370 32.227 211 99 6 147 348 2 177 6.77e-19 90.1
MS.gene31725.t1 MTR_5g092560 31.401 207 136 4 306 506 15 221 1.85e-23 104
MS.gene31725.t1 MTR_8g042690 25.429 350 222 10 170 501 41 369 4.22e-22 100
MS.gene31725.t1 MTR_4g068990 30.769 208 137 5 306 507 15 221 5.91e-21 97.1
MS.gene31725.t1 MTR_3g107420 28.780 205 131 5 146 348 46 237 5.66e-20 91.7
MS.gene31725.t1 MTR_5g077690 25.916 382 216 12 184 505 70 444 7.36e-20 93.6
MS.gene31725.t1 MTR_8g032230 35.366 164 92 4 145 307 8 158 2.25e-19 86.3
MS.gene31725.t1 MTR_1g022305 25.439 342 177 11 169 506 26 293 3.88e-19 90.9
MS.gene31725.t1 MTR_3g063040 24.507 355 230 11 155 498 2 329 3.19e-13 73.2
MS.gene31725.t1 MTR_8g062720 25.248 202 133 4 322 507 345 544 8.84e-12 68.2
MS.gene31725.t1 MTR_8g080160 31.356 118 76 1 390 502 480 597 2.06e-11 67.4
MS.gene31725.t1 MTR_0427s0010 28.079 203 109 6 316 501 1 183 4.34e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31725.t1 AT5G51280 82.770 592 100 2 1 591 1 591 0.0 1011
MS.gene31725.t1 AT4G33370 81.092 513 97 0 79 591 30 542 0.0 873
MS.gene31725.t1 AT1G55150 39.277 415 239 5 120 531 73 477 6.35e-99 310
MS.gene31725.t1 AT1G55150 39.277 415 239 5 120 531 98 502 3.14e-98 309
MS.gene31725.t1 AT5G63120 41.190 420 232 7 117 532 136 544 4.09e-97 308
MS.gene31725.t1 AT2G47330 41.020 451 249 8 87 531 168 607 4.80e-93 302
MS.gene31725.t1 AT3G58510 38.519 405 230 6 136 528 141 538 9.63e-93 297
MS.gene31725.t1 AT3G58510 38.519 405 230 6 136 528 141 538 9.63e-93 297
MS.gene31725.t1 AT3G58510 38.519 405 230 6 136 528 141 538 9.63e-93 297
MS.gene31725.t1 AT3G58570 38.875 409 229 7 134 528 134 535 5.03e-92 296
MS.gene31725.t1 AT2G42520 37.653 409 234 6 134 528 147 548 7.28e-91 293
MS.gene31725.t1 AT2G42520 37.653 409 234 6 134 528 147 548 7.28e-91 293
MS.gene31725.t1 AT2G42520 37.653 409 234 6 134 528 147 548 7.28e-91 293
MS.gene31725.t1 AT2G33730 34.023 532 292 12 39 529 194 707 1.71e-88 290
MS.gene31725.t1 AT1G20920 37.915 422 247 5 117 533 162 573 5.74e-88 290
MS.gene31725.t1 AT1G20920 38.152 422 246 5 117 533 500 911 3.23e-86 291
MS.gene31725.t1 AT1G20920 38.152 422 246 5 117 533 500 911 3.23e-86 291
MS.gene31725.t1 AT1G20920 38.152 422 246 5 117 533 500 911 3.23e-86 291
MS.gene31725.t1 AT1G20920 38.152 422 246 5 117 533 500 911 3.23e-86 291
MS.gene31725.t1 AT1G20920 38.152 422 246 5 117 533 500 911 3.23e-86 291
MS.gene31725.t1 AT1G20920 38.152 422 246 5 117 533 500 911 3.23e-86 291
MS.gene31725.t1 AT3G01540 38.741 413 231 8 126 531 138 535 2.54e-85 278
MS.gene31725.t1 AT3G01540 38.741 413 231 8 126 531 138 535 2.54e-85 278
MS.gene31725.t1 AT3G01540 38.741 413 231 8 126 531 138 535 2.54e-85 278
MS.gene31725.t1 AT3G01540 38.741 413 231 8 126 531 138 535 2.65e-85 278
MS.gene31725.t1 AT5G14610 38.386 409 230 8 130 531 145 538 7.36e-84 275
MS.gene31725.t1 AT5G14610 38.386 409 230 8 130 531 145 538 7.77e-84 275
MS.gene31725.t1 AT5G14610 38.386 409 230 8 130 531 153 546 1.55e-83 274
MS.gene31725.t1 AT3G06480 39.320 412 232 7 125 531 414 812 1.98e-79 271
MS.gene31725.t1 AT1G31970 37.981 416 222 12 129 525 95 493 2.78e-79 260
MS.gene31725.t1 AT5G14610 38.889 378 211 7 160 531 44 407 4.60e-78 256
MS.gene31725.t1 AT5G14610 38.889 378 211 7 160 531 44 407 4.60e-78 256
MS.gene31725.t1 AT5G14610 37.831 415 232 10 127 531 208 606 6.05e-78 261
MS.gene31725.t1 AT3G09620 36.451 417 215 7 117 525 368 742 1.55e-73 254
MS.gene31725.t1 AT3G09620 36.451 417 215 7 117 525 367 741 1.57e-73 254
MS.gene31725.t1 AT5G63120 40.115 349 195 6 117 461 136 474 4.60e-73 242
MS.gene31725.t1 AT5G63120 40.115 349 195 6 117 461 136 474 4.96e-73 242
MS.gene31725.t1 AT5G63120 40.115 349 195 6 117 461 136 474 4.96e-73 242
MS.gene31725.t1 AT5G63120 40.115 349 195 6 117 461 136 474 4.96e-73 242
MS.gene31725.t1 AT1G28180 38.122 362 201 7 176 529 3 349 2.30e-68 226
MS.gene31725.t1 AT5G60990 33.333 369 234 4 145 507 8 370 1.06e-64 219
MS.gene31725.t1 AT1G16280 33.793 435 252 11 147 568 59 470 8.11e-64 218
MS.gene31725.t1 AT1G77030 33.756 394 243 6 148 537 30 409 1.11e-63 224
MS.gene31725.t1 AT5G14610 35.475 358 212 7 130 481 153 497 5.30e-63 216
MS.gene31725.t1 AT3G09720 34.307 411 236 11 101 500 96 483 3.19e-61 212
MS.gene31725.t1 AT3G09720 34.307 411 236 11 101 500 96 483 3.19e-61 212
MS.gene31725.t1 AT3G02065 30.695 417 275 7 121 531 83 491 4.86e-61 211
MS.gene31725.t1 AT3G02065 30.695 417 275 7 121 531 83 491 4.86e-61 211
MS.gene31725.t1 AT3G06480 37.714 350 201 6 126 470 415 752 1.44e-60 215
MS.gene31725.t1 AT3G22330 35.028 354 215 7 157 506 115 457 4.07e-60 211
MS.gene31725.t1 AT4G16630 33.005 406 243 7 147 538 168 558 6.73e-60 213
MS.gene31725.t1 AT5G26742 32.446 413 243 7 151 547 107 499 3.83e-59 211
MS.gene31725.t1 AT5G26742 32.446 413 243 7 151 547 107 499 3.88e-59 211
MS.gene31725.t1 AT3G22310 34.711 363 222 7 150 508 120 471 2.11e-58 206
MS.gene31725.t1 AT3G22310 34.711 363 222 7 150 508 120 471 2.76e-58 206
MS.gene31725.t1 AT3G13920 29.665 418 272 9 118 532 14 412 3.43e-58 201
MS.gene31725.t1 AT3G13920 30.769 390 251 8 146 532 29 402 6.32e-58 199
MS.gene31725.t1 AT3G13920 29.665 418 267 10 118 532 14 407 1.62e-56 196
MS.gene31725.t1 AT5G26742 32.898 383 221 7 181 547 44 406 2.19e-56 201
MS.gene31725.t1 AT3G13920 29.298 413 271 8 118 527 14 408 7.37e-56 194
MS.gene31725.t1 AT3G13920 29.298 413 271 8 118 527 18 412 1.02e-55 194
MS.gene31725.t1 AT1G72730 30.077 389 253 8 147 532 42 414 1.82e-55 193
MS.gene31725.t1 AT1G51380 30.691 391 249 6 145 532 21 392 2.77e-55 192
MS.gene31725.t1 AT5G65900 32.861 353 216 7 146 490 154 493 3.38e-55 197
MS.gene31725.t1 AT3G19760 30.534 393 250 7 145 532 34 408 2.12e-54 190
MS.gene31725.t1 AT3G18600 32.597 362 229 6 133 490 77 427 2.36e-54 194
MS.gene31725.t1 AT1G54270 30.867 392 248 8 146 532 39 412 3.17e-54 190
MS.gene31725.t1 AT1G71370 32.105 380 236 9 141 507 9 379 8.46e-54 192
MS.gene31725.t1 AT1G54270 31.551 374 233 8 164 532 52 407 3.84e-53 187
MS.gene31725.t1 AT3G02065 30.387 362 240 6 174 531 1 354 5.15e-52 182
MS.gene31725.t1 AT5G62190 32.115 383 236 9 140 512 93 461 4.21e-51 187
MS.gene31725.t1 AT5G05450 31.250 384 226 10 146 501 9 382 5.29e-50 182
MS.gene31725.t1 AT4G00660 29.293 396 262 6 139 532 123 502 4.13e-49 178
MS.gene31725.t1 AT4G00660 29.293 396 262 6 139 532 123 502 4.13e-49 178
MS.gene31725.t1 AT2G45810 30.685 365 236 5 139 501 146 495 5.27e-49 179
MS.gene31725.t1 AT3G61240 30.618 356 229 6 148 501 126 465 6.06e-49 177
MS.gene31725.t1 AT3G61240 30.618 356 229 6 148 501 126 465 6.06e-49 177
MS.gene31725.t1 AT2G40700 29.469 414 208 9 165 502 50 455 2.09e-47 176
MS.gene31725.t1 AT1G12770 27.711 415 240 8 144 505 108 515 1.68e-46 172
MS.gene31725.t1 AT1G12770 27.711 415 240 8 144 505 108 515 1.68e-46 172
MS.gene31725.t1 AT5G11170 29.737 380 235 11 136 501 31 392 1.14e-45 167
MS.gene31725.t1 AT5G11200 29.737 380 235 11 136 501 31 392 1.14e-45 167
MS.gene31725.t1 AT5G54910 31.081 444 256 14 144 562 69 487 2.82e-44 168
MS.gene31725.t1 AT5G63630 32.102 352 218 7 158 495 66 410 1.45e-43 163
MS.gene31725.t1 AT5G63630 32.102 352 218 7 158 495 260 604 1.39e-42 163
MS.gene31725.t1 AT4G09730 28.906 384 231 10 145 503 111 477 1.69e-42 162
MS.gene31725.t1 AT2G07750 30.713 407 256 9 113 501 340 738 1.13e-40 158
MS.gene31725.t1 AT5G08610 31.461 356 215 7 158 495 394 738 1.20e-40 158
MS.gene31725.t1 AT5G11170 30.982 326 198 10 185 501 2 309 1.59e-40 150
MS.gene31725.t1 AT5G11200 27.962 422 229 13 136 501 31 433 1.91e-40 153
MS.gene31725.t1 AT1G63250 31.054 351 224 7 158 495 340 685 2.01e-39 154
MS.gene31725.t1 AT5G08620 30.899 356 217 8 158 495 92 436 3.60e-39 151
MS.gene31725.t1 AT5G11200 27.231 437 231 13 136 501 31 451 4.61e-39 150
MS.gene31725.t1 AT3G53110 29.351 385 229 13 135 495 80 445 5.24e-38 147
MS.gene31725.t1 AT1G71280 29.940 334 193 10 139 465 11 310 5.74e-36 138
MS.gene31725.t1 AT1G71280 29.586 338 197 10 139 469 11 314 3.02e-35 139
MS.gene31725.t1 AT3G06980 28.721 383 237 13 146 501 374 747 3.99e-33 135
MS.gene31725.t1 AT3G16840 27.209 430 232 11 148 506 193 612 5.01e-33 135
MS.gene31725.t1 AT3G16840 27.209 430 232 11 148 506 192 611 5.62e-33 135
MS.gene31725.t1 AT4G34910 28.070 399 224 11 144 491 44 430 8.22e-32 130
MS.gene31725.t1 AT5G19210 26.842 380 242 10 136 490 66 434 2.31e-29 122
MS.gene31725.t1 AT1G51380 29.151 271 174 5 145 412 21 276 1.56e-27 112
MS.gene31725.t1 AT1G51380 30.233 215 136 2 145 359 21 221 4.76e-25 106
MS.gene31725.t1 AT1G51380 30.233 215 136 2 145 359 21 221 8.08e-25 105
MS.gene31725.t1 AT4G15850 24.455 413 236 10 159 505 44 446 7.99e-22 99.8
MS.gene31725.t1 AT5G19210 27.039 233 146 7 281 490 46 277 1.31e-17 84.7
MS.gene31725.t1 AT5G19210 27.039 233 146 7 281 490 46 277 1.31e-17 84.7
MS.gene31725.t1 AT1G28180 37.795 127 63 3 176 297 3 118 6.80e-15 72.0
MS.gene31725.t1 AT1G27880 24.251 367 217 13 173 515 274 603 5.90e-13 72.4
MS.gene31725.t1 AT1G27880 24.251 367 217 13 173 515 274 603 6.22e-13 72.4

Find 143 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTATGACGTTCTAATTT+TGG 0.116059 1.1:-12926496 None:intergenic
TCTAGCAAAATTCTGAATTT+TGG 0.133852 1.1:-12925840 None:intergenic
CCATCCAATGGTAGCTAAAA+TGG 0.220873 1.1:+12924800 None:intergenic
GGAATTGCTTTCACGGGTTC+TGG 0.240475 1.1:+12925368 MS.gene31725:CDS
CACATAGTTGTTGCCACGCC+TGG 0.274883 1.1:+12925644 MS.gene31725:CDS
CGTCCCACATTGACAATAAT+AGG 0.278247 1.1:-12925878 None:intergenic
TTGTTACCTTTGAAGGAATC+TGG 0.284937 1.1:+12925542 MS.gene31725:CDS
CTCAGACCTTTGCTTTGTAT+TGG 0.297978 1.1:+12925575 MS.gene31725:CDS
TTTCTAGAATCATCATCTAT+TGG 0.306294 1.1:-12924915 None:intergenic
ACAATTCTTGTTACCTTTGA+AGG 0.309882 1.1:+12925535 MS.gene31725:CDS
GGCGAATCTTGATGTTATTC+AGG 0.315986 1.1:+12925910 MS.gene31725:CDS
AATAATAGGAAGGATTGTTT+TGG 0.320959 1.1:+12926532 MS.gene31725:CDS
GTGTGGCAAATGCAAATAAT+AGG 0.343166 1.1:+12926518 MS.gene31725:CDS
TGTGCAGCCAACACCTATTC+AGG 0.343871 1.1:+12925304 MS.gene31725:CDS
CAAGCAATGTTGTCTCAGTT+TGG 0.345951 1.1:-12926318 None:intergenic
TGATATTGCATCCAAAGGTT+TGG 0.363188 1.1:+12926168 MS.gene31725:CDS
TCAATCAGCTCAGCCAAAAC+AGG 0.376407 1.1:-12926382 None:intergenic
AGCCTCCTTTGCATATTAGA+AGG 0.387546 1.1:+12925141 MS.gene31725:CDS
ACCGGAAGATGTGGCAAAAC+TGG 0.393311 1.1:+12926268 MS.gene31725:CDS
AGACCTTTGCTTTGTATTGG+TGG 0.394935 1.1:+12925578 MS.gene31725:CDS
TTAATGACATGCTGAATATC+AGG 0.397176 1.1:-12926196 None:intergenic
TCCCTCCCAGATAAAATAAC+AGG 0.398029 1.1:-12925338 None:intergenic
TACAGAACAGATTGTTCAAC+AGG 0.398392 1.1:+12925016 MS.gene31725:CDS
GTGGAAGCCGTGGCAATTCA+TGG 0.398757 1.1:+12926070 MS.gene31725:CDS
CTAATTCACGAACCGACATA+AGG 0.404039 1.1:-12925076 None:intergenic
ATCAGGAAAATCCAAACCTT+TGG 0.404652 1.1:-12926179 None:intergenic
GGAAGCCCTTGCACCTGAAT+AGG 0.407757 1.1:-12925317 None:intergenic
GGCTGATCGATTGGTAGATC+CGG 0.411884 1.1:+12925736 MS.gene31725:CDS
CACGGGTTCTGGCAAAACTT+TGG 0.414563 1.1:+12925379 MS.gene31725:CDS
GAAAATTATGTCCATAGGAT+TGG 0.415181 1.1:+12926241 MS.gene31725:CDS
TATTTGTCCATCGAGGGAAT+TGG 0.416876 1.1:+12925487 MS.gene31725:CDS
ATTGTCAATGTGGGACGTGC+AGG 0.426137 1.1:+12925884 MS.gene31725:CDS
TGCATTGCCATCATGATCAT+TGG 0.427490 1.1:-12925413 None:intergenic
TAATTCACGAACCGACATAA+GGG 0.432495 1.1:-12925075 None:intergenic
TTCTCACAAAATATCAAAAC+AGG 0.435087 1.1:-12926001 None:intergenic
GTCATTTAAGACTGGAAAGA+AGG 0.439351 1.1:+12926129 MS.gene31725:CDS
ATTACGATGCCTGTAGTTCC+CGG 0.440391 1.1:+12925443 MS.gene31725:CDS
AACATCTTCAAAATAGGATC+CGG 0.446469 1.1:-12925266 None:intergenic
AATGGAAGAAGATGATTATG+AGG 0.446862 1.1:+12924818 MS.gene31725:CDS
TATAACGAACCATTGCCTAC+TGG 0.451678 1.1:+12925113 MS.gene31725:CDS
TAAGCCCAGTCTACTTGTTA+AGG 0.455473 1.1:+12924956 MS.gene31725:CDS
ATTTCTTCATTATCTTCCAT+TGG 0.457806 1.1:-12926406 None:intergenic
TTCCGGTACGTCCAATCCTA+TGG 0.458107 1.1:-12926252 None:intergenic
CAAAATATCAAAACAGGAGG+TGG 0.462408 1.1:-12925995 None:intergenic
GCTATTTCGTCATTTAAGAC+TGG 0.467758 1.1:+12926121 MS.gene31725:CDS
GGACAAATAATCAGACCAAA+TGG 0.468369 1.1:-12925473 None:intergenic
AATGATCATGATGGCAATGC+AGG 0.472381 1.1:+12925415 MS.gene31725:CDS
ATAACGAACCATTGCCTACT+GGG 0.472936 1.1:+12925114 MS.gene31725:CDS
GGACCTTCACCGGGAACTAC+AGG 0.475654 1.1:-12925452 None:intergenic
CATGAGTATCTTCTCTTGAA+AGG 0.476814 1.1:+12926046 MS.gene31725:CDS
TTATCTGGGAGGGATATGAT+TGG 0.476899 1.1:+12925347 MS.gene31725:CDS
ATGGCGCGACGCTTCGCCAC+AGG 0.477803 1.1:-12924849 None:intergenic
TATGATTGGAATTGCTTTCA+CGG 0.478341 1.1:+12925361 MS.gene31725:CDS
TTTGAAGGAATCTGGATATC+CGG 0.481624 1.1:+12925550 MS.gene31725:CDS
GAAGAAATCACTGGCATAAG+TGG 0.482770 1.1:+12926421 MS.gene31725:CDS
CAGATAATTTCCCTTTGCGT+TGG 0.485668 1.1:-12924890 None:intergenic
TTGAAGATGTTGAAAACCAA+GGG 0.486333 1.1:+12925278 MS.gene31725:CDS
TGTTGGCTGCACAATCCCCT+TGG 0.486336 1.1:-12925294 None:intergenic
GTTCCCGGTGAAGGTCCATT+TGG 0.490787 1.1:+12925458 MS.gene31725:CDS
CAGACCAAATGGACCTTCAC+CGG 0.492977 1.1:-12925462 None:intergenic
CTTATATCATCTTCAAATCC+CGG 0.494897 1.1:-12925755 None:intergenic
TCCTTAAAATTCTTAATCGC+GGG 0.495673 1.1:-12925233 None:intergenic
AAATGAATCTTGATAACTGC+AGG 0.497521 1.1:+12925696 MS.gene31725:CDS
CAGTGGCATATAATTGTCAA+TGG 0.504194 1.1:+12925197 MS.gene31725:CDS
TGTGGCGAAGCGTCGCGCCA+TGG 0.508155 1.1:+12924851 MS.gene31725:CDS
CACTGGCATAAGTGGTGTCA+AGG 0.508531 1.1:+12926429 MS.gene31725:CDS
TGAGGCCTTAACAAGTAGAC+TGG 0.510721 1.1:-12924961 None:intergenic
ATCCTTAAAATTCTTAATCG+CGG 0.511417 1.1:-12925234 None:intergenic
ACATAGTTGTTGCCACGCCT+GGG 0.514259 1.1:+12925645 MS.gene31725:CDS
ACAGCTTGAGATTGTCAAGA+AGG 0.518951 1.1:+12925616 MS.gene31725:CDS
ATGATTGGAATTGCTTTCAC+GGG 0.521318 1.1:+12925362 MS.gene31725:CDS
CAAAGCAAAGGTCTGAGCTC+CGG 0.523344 1.1:-12925569 None:intergenic
AATTCATGGAGACAAGGATC+AGG 0.523834 1.1:+12926084 MS.gene31725:CDS
GAGAATCTTCTGAGCTTCCA+TGG 0.525892 1.1:-12924868 None:intergenic
TTTGAAGATGTTGAAAACCA+AGG 0.526623 1.1:+12925277 MS.gene31725:CDS
CAGCTTGAGATTGTCAAGAA+GGG 0.528031 1.1:+12925617 MS.gene31725:CDS
AAAATATCAAAACAGGAGGT+GGG 0.530476 1.1:-12925994 None:intergenic
GACTGGAAAGAAGGATGTGT+TGG 0.532068 1.1:+12926138 MS.gene31725:CDS
TTAAAATTCTTAATCGCGGG+TGG 0.532306 1.1:-12925230 None:intergenic
GTTAGATGAGGCTGATCGAT+TGG 0.534300 1.1:+12925727 MS.gene31725:CDS
TTGTCAATGTGGGACGTGCA+GGG 0.535671 1.1:+12925885 MS.gene31725:CDS
CAATGTGGGACGTGCAGGGG+CGG 0.535678 1.1:+12925889 MS.gene31725:CDS
AAATTGAAAATTATGTCCAT+AGG 0.540038 1.1:+12926236 MS.gene31725:CDS
AGAAGATTCTCCAACGCAAA+GGG 0.540048 1.1:+12924880 MS.gene31725:CDS
TGCCACGCCTGGGAGGTTGA+AGG 0.543540 1.1:+12925655 MS.gene31725:CDS
GTCCATAGGATTGGACGTAC+CGG 0.544392 1.1:+12926250 MS.gene31725:CDS
GGCTGAGCTGATTGATCCAA+TGG 0.544866 1.1:+12926390 MS.gene31725:CDS
AACATATCCTTCAACCTCCC+AGG 0.545718 1.1:-12925662 None:intergenic
TGTTCTGTAACACTAATCTC+AGG 0.547023 1.1:-12925002 None:intergenic
GCAACTGATATTGCATCCAA+AGG 0.548492 1.1:+12926163 MS.gene31725:CDS
GTCATCCTTCTAATATGCAA+AGG 0.548607 1.1:-12925146 None:intergenic
GCTGATCGATTGGTAGATCC+GGG 0.548897 1.1:+12925737 MS.gene31725:CDS
TCTGATTATTTGTCCATCGA+GGG 0.551896 1.1:+12925481 MS.gene31725:CDS
TGCCTCGCCAATTCCCTCGA+TGG 0.556276 1.1:-12925494 None:intergenic
CGGTTCGTGAATTAGCGAAA+GGG 0.557381 1.1:+12925084 MS.gene31725:CDS
GGATATCCAGATTCCTTCAA+AGG 0.559706 1.1:-12925548 None:intergenic
CTTGTCTCCATGAATTGCCA+CGG 0.563651 1.1:-12926077 None:intergenic
GAAGATAATGAAGAAATCAC+TGG 0.564788 1.1:+12926412 MS.gene31725:CDS
GGCTTCCACCCAGTAGGCAA+TGG 0.565220 1.1:-12925122 None:intergenic
ATGCCTGTAGTTCCCGGTGA+AGG 0.572075 1.1:+12925449 MS.gene31725:CDS
AAAACCTATTATTGTCAATG+TGG 0.574587 1.1:+12925874 MS.gene31725:CDS
AGACCAAATGGACCTTCACC+GGG 0.576562 1.1:-12925461 None:intergenic
AGCTTGAGATTGTCAAGAAG+GGG 0.576627 1.1:+12925618 MS.gene31725:CDS
TGGGAGGTTGAAGGATATGT+TGG 0.576648 1.1:+12925664 MS.gene31725:CDS
CAGAAGATTCTCCAACGCAA+AGG 0.577959 1.1:+12924879 MS.gene31725:CDS
GTCTGATTATTTGTCCATCG+AGG 0.580654 1.1:+12925480 MS.gene31725:CDS
TGTGCTTCCAATGATCATGA+TGG 0.581752 1.1:+12925406 MS.gene31725:CDS
TTTGGATCTGGAGGTTACAA+AGG 0.585574 1.1:+12926550 MS.gene31725:CDS
CAATCAGCTCAGCCAAAACA+GGG 0.585774 1.1:-12926381 None:intergenic
AAATATCAAAACAGGAGGTG+GGG 0.587549 1.1:-12925993 None:intergenic
TTGTTCTTTCTTTAACTGTG+AGG 0.588178 1.1:-12924979 None:intergenic
GGCAAATGCAAATAATAGGA+AGG 0.588904 1.1:+12926522 MS.gene31725:CDS
TTGATCACTTCAAAGCTCAA+AGG 0.591719 1.1:+12925786 MS.gene31725:CDS
TGTCAATGTGGGACGTGCAG+GGG 0.592163 1.1:+12925886 MS.gene31725:CDS
AAACCTATTATTGTCAATGT+GGG 0.592275 1.1:+12925875 MS.gene31725:CDS
CCAACACCTATTCAGGTGCA+AGG 0.595863 1.1:+12925311 MS.gene31725:CDS
GTCCATCGAGGGAATTGGCG+AGG 0.598686 1.1:+12925492 MS.gene31725:CDS
CAGGTATTTAACGTTAGATG+AGG 0.599810 1.1:+12925715 MS.gene31725:CDS
TCGGTTCGTGAATTAGCGAA+AGG 0.600474 1.1:+12925083 MS.gene31725:CDS
ACTGGCATAAGTGGTGTCAA+GGG 0.604219 1.1:+12926430 MS.gene31725:CDS
CGTGGCAATTCATGGAGACA+AGG 0.604702 1.1:+12926078 MS.gene31725:CDS
ATTGGACGTACCGGAAGATG+TGG 0.605046 1.1:+12926259 MS.gene31725:CDS
ATCCTTCAACCTCCCAGGCG+TGG 0.609061 1.1:-12925657 None:intergenic
CCTTGCACCTGAATAGGTGT+TGG 0.609165 1.1:-12925311 None:intergenic
ATCCTTCTAATATGCAAAGG+AGG 0.612632 1.1:-12925143 None:intergenic
GTATCTTCTCTTGAAAGGAG+TGG 0.613245 1.1:+12926051 MS.gene31725:CDS
AGTAGAGTATGTCAAACAAG+AGG 0.613269 1.1:+12925934 MS.gene31725:CDS
TAGTTGTTGCCACGCCTGGG+AGG 0.621410 1.1:+12925648 MS.gene31725:CDS
CAACACCTATTCAGGTGCAA+GGG 0.626640 1.1:+12925312 MS.gene31725:CDS
ATTAGAACGTCATAATAGTG+TGG 0.631530 1.1:+12926501 MS.gene31725:CDS
ATTCCACCAATACAAAGCAA+AGG 0.634010 1.1:-12925581 None:intergenic
GAGGCCTTAACAAGTAGACT+GGG 0.645952 1.1:-12924960 None:intergenic
TCACAAAATATCAAAACAGG+AGG 0.646136 1.1:-12925998 None:intergenic
ATCAGCTCAGCCAAAACAGG+GGG 0.654999 1.1:-12926379 None:intergenic
GATCATGATGGCAATGCAGG+AGG 0.660735 1.1:+12925418 MS.gene31725:CDS
CTTGAAAGGAGTGGAAGCCG+TGG 0.660852 1.1:+12926060 MS.gene31725:CDS
TGAAGATGTTGAAAACCAAG+GGG 0.665813 1.1:+12925279 MS.gene31725:CDS
GCTTGAGATTGTCAAGAAGG+GGG 0.666059 1.1:+12925619 MS.gene31725:CDS
AAAGGAGGCTTCCACCCAGT+AGG 0.671260 1.1:-12925128 None:intergenic
AATCAGCTCAGCCAAAACAG+GGG 0.693758 1.1:-12926380 None:intergenic
ACGAACCATTGCCTACTGGG+TGG 0.698489 1.1:+12925117 MS.gene31725:CDS
TTATGAGGAGTATATTCCTG+TGG 0.702818 1.1:+12924833 MS.gene31725:CDS
TGATTCTAGAAAACTAAGTG+TGG 0.748043 1.1:+12924926 MS.gene31725:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAAAATTATGTCCAT+AGG + chr1.1:12926236-12926255 MS.gene31725:CDS 20.0%
!!! TTAAGAATTTTAAGGATATG+AGG + chr1.1:12925240-12925259 MS.gene31725:CDS 20.0%
!!! TTTGATATTTTGTGAGAATA+AGG + chr1.1:12926006-12926025 MS.gene31725:CDS 20.0%
! AAAACCTATTATTGTCAATG+TGG + chr1.1:12925874-12925893 MS.gene31725:CDS 25.0%
! AAACCTATTATTGTCAATGT+GGG + chr1.1:12925875-12925894 MS.gene31725:CDS 25.0%
! ATCCTTAAAATTCTTAATCG+CGG - chr1.1:12925237-12925256 None:intergenic 25.0%
! ATTTCTTCATTATCTTCCAT+TGG - chr1.1:12926409-12926428 None:intergenic 25.0%
! TGATAAAAAAACCCTTATGT+CGG + chr1.1:12925064-12925083 MS.gene31725:CDS 25.0%
! TTCTCACAAAATATCAAAAC+AGG - chr1.1:12926004-12926023 None:intergenic 25.0%
!! AATAATAGGAAGGATTGTTT+TGG + chr1.1:12926532-12926551 MS.gene31725:CDS 25.0%
!! ACATAATTTTCAATTTCAGC+AGG - chr1.1:12926232-12926251 None:intergenic 25.0%
!! ATCAAGATTCATTTTCTTCT+TGG - chr1.1:12925690-12925709 None:intergenic 25.0%
!! CTATTATGACGTTCTAATTT+TGG - chr1.1:12926499-12926518 None:intergenic 25.0%
!! GTTTTCAACATCTTCAAAAT+AGG - chr1.1:12925275-12925294 None:intergenic 25.0%
!! TCTAGCAAAATTCTGAATTT+TGG - chr1.1:12925843-12925862 None:intergenic 25.0%
!!! TTTCTAGAATCATCATCTAT+TGG - chr1.1:12924918-12924937 None:intergenic 25.0%
AAAATATCAAAACAGGAGGT+GGG - chr1.1:12925997-12926016 None:intergenic 30.0%
AACATCTTCAAAATAGGATC+CGG - chr1.1:12925269-12925288 None:intergenic 30.0%
AATGGAAGAAGATGATTATG+AGG + chr1.1:12924818-12924837 MS.gene31725:CDS 30.0%
ACAATTCTTGTTACCTTTGA+AGG + chr1.1:12925535-12925554 MS.gene31725:CDS 30.0%
ATTAGAACGTCATAATAGTG+TGG + chr1.1:12926501-12926520 MS.gene31725:CDS 30.0%
CTTATATCATCTTCAAATCC+CGG - chr1.1:12925758-12925777 None:intergenic 30.0%
GAAAATTATGTCCATAGGAT+TGG + chr1.1:12926241-12926260 MS.gene31725:CDS 30.0%
GAAGATAATGAAGAAATCAC+TGG + chr1.1:12926412-12926431 MS.gene31725:CDS 30.0%
GTGATTTGATTCAAAAACAG+TGG + chr1.1:12925180-12925199 MS.gene31725:CDS 30.0%
TATGATTGGAATTGCTTTCA+CGG + chr1.1:12925361-12925380 MS.gene31725:CDS 30.0%
TCACAAAATATCAAAACAGG+AGG - chr1.1:12926001-12926020 None:intergenic 30.0%
TCCTTAAAATTCTTAATCGC+GGG - chr1.1:12925236-12925255 None:intergenic 30.0%
TTAATGACATGCTGAATATC+AGG - chr1.1:12926199-12926218 None:intergenic 30.0%
TTGAAGATGTTGAAAACCAA+GGG + chr1.1:12925278-12925297 MS.gene31725:CDS 30.0%
TTGTTCTTTCTTTAACTGTG+AGG - chr1.1:12924982-12925001 None:intergenic 30.0%
TTTGAAGATGTTGAAAACCA+AGG + chr1.1:12925277-12925296 MS.gene31725:CDS 30.0%
! AAATGAATCTTGATAACTGC+AGG + chr1.1:12925696-12925715 MS.gene31725:CDS 30.0%
! TGATTCTAGAAAACTAAGTG+TGG + chr1.1:12924926-12924945 MS.gene31725:CDS 30.0%
!! GCAAAATTCTGAATTTTGGT+TGG - chr1.1:12925839-12925858 None:intergenic 30.0%
!! TTTTAAGGATATGAGGTTTC+CGG + chr1.1:12925247-12925266 MS.gene31725:CDS 30.0%
AAATATCAAAACAGGAGGTG+GGG - chr1.1:12925996-12926015 None:intergenic 35.0%
AGTAGAGTATGTCAAACAAG+AGG + chr1.1:12925934-12925953 MS.gene31725:CDS 35.0%
ATCAGGAAAATCCAAACCTT+TGG - chr1.1:12926182-12926201 None:intergenic 35.0%
ATCCTTCTAATATGCAAAGG+AGG - chr1.1:12925146-12925165 None:intergenic 35.0%
ATGATTGGAATTGCTTTCAC+GGG + chr1.1:12925362-12925381 MS.gene31725:CDS 35.0%
ATTCCACCAATACAAAGCAA+AGG - chr1.1:12925584-12925603 None:intergenic 35.0%
CAAAATATCAAAACAGGAGG+TGG - chr1.1:12925998-12926017 None:intergenic 35.0%
CAGGTATTTAACGTTAGATG+AGG + chr1.1:12925715-12925734 MS.gene31725:CDS 35.0%
CAGTGGCATATAATTGTCAA+TGG + chr1.1:12925197-12925216 MS.gene31725:CDS 35.0%
CATGAGTATCTTCTCTTGAA+AGG + chr1.1:12926046-12926065 MS.gene31725:CDS 35.0%
GGACAAATAATCAGACCAAA+TGG - chr1.1:12925476-12925495 None:intergenic 35.0%
GGCAAATGCAAATAATAGGA+AGG + chr1.1:12926522-12926541 MS.gene31725:CDS 35.0%
GTCATCCTTCTAATATGCAA+AGG - chr1.1:12925149-12925168 None:intergenic 35.0%
GTGTGGCAAATGCAAATAAT+AGG + chr1.1:12926518-12926537 MS.gene31725:CDS 35.0%
TAATTCACGAACCGACATAA+GGG - chr1.1:12925078-12925097 None:intergenic 35.0%
TACAGAACAGATTGTTCAAC+AGG + chr1.1:12925016-12925035 MS.gene31725:CDS 35.0%
TCTGATTATTTGTCCATCGA+GGG + chr1.1:12925481-12925500 MS.gene31725:CDS 35.0%
TGAAGATGTTGAAAACCAAG+GGG + chr1.1:12925279-12925298 MS.gene31725:CDS 35.0%
TGATATTGCATCCAAAGGTT+TGG + chr1.1:12926168-12926187 MS.gene31725:CDS 35.0%
TGTTCTGTAACACTAATCTC+AGG - chr1.1:12925005-12925024 None:intergenic 35.0%
TTAAAATTCTTAATCGCGGG+TGG - chr1.1:12925233-12925252 None:intergenic 35.0%
TTGATCACTTCAAAGCTCAA+AGG + chr1.1:12925786-12925805 MS.gene31725:CDS 35.0%
TTTGAAGGAATCTGGATATC+CGG + chr1.1:12925550-12925569 MS.gene31725:CDS 35.0%
! ACCCGCGATTAAGAATTTTA+AGG + chr1.1:12925232-12925251 MS.gene31725:CDS 35.0%
! GCTATTTCGTCATTTAAGAC+TGG + chr1.1:12926121-12926140 MS.gene31725:CDS 35.0%
! GTCATTTAAGACTGGAAAGA+AGG + chr1.1:12926129-12926148 MS.gene31725:CDS 35.0%
! TCTGTTTTGCTTCTTGCAAA+AGG - chr1.1:12926354-12926373 None:intergenic 35.0%
! TTATGAGGAGTATATTCCTG+TGG + chr1.1:12924833-12924852 MS.gene31725:CDS 35.0%
! TTGTTACCTTTGAAGGAATC+TGG + chr1.1:12925542-12925561 MS.gene31725:CDS 35.0%
! TTTTGCAAGAAGCAAAACAG+AGG + chr1.1:12926353-12926372 MS.gene31725:CDS 35.0%
!!! GAATTTTGCTAGAAGTGCTT+TGG + chr1.1:12925850-12925869 MS.gene31725:CDS 35.0%
!!! GGCTTCCTGTTATTTTATCT+GGG + chr1.1:12925333-12925352 MS.gene31725:CDS 35.0%
!!! TCCTGTTATTTTATCTGGGA+GGG + chr1.1:12925337-12925356 MS.gene31725:CDS 35.0%
!!! TTCCTGTTATTTTATCTGGG+AGG + chr1.1:12925336-12925355 MS.gene31725:CDS 35.0%
AATGATCATGATGGCAATGC+AGG + chr1.1:12925415-12925434 MS.gene31725:CDS 40.0%
AATTCATGGAGACAAGGATC+AGG + chr1.1:12926084-12926103 MS.gene31725:CDS 40.0%
ACAGCTTGAGATTGTCAAGA+AGG + chr1.1:12925616-12925635 MS.gene31725:CDS 40.0%
AGAAGATTCTCCAACGCAAA+GGG + chr1.1:12924880-12924899 MS.gene31725:CDS 40.0%
AGACCTTTGCTTTGTATTGG+TGG + chr1.1:12925578-12925597 MS.gene31725:CDS 40.0%
AGCCTCCTTTGCATATTAGA+AGG + chr1.1:12925141-12925160 MS.gene31725:CDS 40.0%
AGCTTGAGATTGTCAAGAAG+GGG + chr1.1:12925618-12925637 MS.gene31725:CDS 40.0%
ATAACGAACCATTGCCTACT+GGG + chr1.1:12925114-12925133 MS.gene31725:CDS 40.0%
CAAGCAATGTTGTCTCAGTT+TGG - chr1.1:12926321-12926340 None:intergenic 40.0%
CAGATAATTTCCCTTTGCGT+TGG - chr1.1:12924893-12924912 None:intergenic 40.0%
CAGCTTGAGATTGTCAAGAA+GGG + chr1.1:12925617-12925636 MS.gene31725:CDS 40.0%
CGTCCCACATTGACAATAAT+AGG - chr1.1:12925881-12925900 None:intergenic 40.0%
CTAATTCACGAACCGACATA+AGG - chr1.1:12925079-12925098 None:intergenic 40.0%
CTCAGACCTTTGCTTTGTAT+TGG + chr1.1:12925575-12925594 MS.gene31725:CDS 40.0%
GAAGAAATCACTGGCATAAG+TGG + chr1.1:12926421-12926440 MS.gene31725:CDS 40.0%
GCAACTGATATTGCATCCAA+AGG + chr1.1:12926163-12926182 MS.gene31725:CDS 40.0%
GGATATCCAGATTCCTTCAA+AGG - chr1.1:12925551-12925570 None:intergenic 40.0%
GGCGAATCTTGATGTTATTC+AGG + chr1.1:12925910-12925929 MS.gene31725:CDS 40.0%
GTATCTTCTCTTGAAAGGAG+TGG + chr1.1:12926051-12926070 MS.gene31725:CDS 40.0%
GTCTGATTATTTGTCCATCG+AGG + chr1.1:12925480-12925499 MS.gene31725:CDS 40.0%
TATAACGAACCATTGCCTAC+TGG + chr1.1:12925113-12925132 MS.gene31725:CDS 40.0%
TATTTGTCCATCGAGGGAAT+TGG + chr1.1:12925487-12925506 MS.gene31725:CDS 40.0%
TCCCTCCCAGATAAAATAAC+AGG - chr1.1:12925341-12925360 None:intergenic 40.0%
TGCATTGCCATCATGATCAT+TGG - chr1.1:12925416-12925435 None:intergenic 40.0%
TGTGCTTCCAATGATCATGA+TGG + chr1.1:12925406-12925425 MS.gene31725:CDS 40.0%
TTATCTGGGAGGGATATGAT+TGG + chr1.1:12925347-12925366 MS.gene31725:CDS 40.0%
TTTGGATCTGGAGGTTACAA+AGG + chr1.1:12926550-12926569 MS.gene31725:CDS 40.0%
! TAAGCCCAGTCTACTTGTTA+AGG + chr1.1:12924956-12924975 MS.gene31725:CDS 40.0%
!!! AAGGATTGTTTTGGATCTGG+AGG + chr1.1:12926541-12926560 MS.gene31725:CDS 40.0%
!!! AGGAAGGATTGTTTTGGATC+TGG + chr1.1:12926538-12926557 MS.gene31725:CDS 40.0%
!!! GGGCTTCCTGTTATTTTATC+TGG + chr1.1:12925332-12925351 MS.gene31725:CDS 40.0%
AACATATCCTTCAACCTCCC+AGG - chr1.1:12925665-12925684 None:intergenic 45.0%
AATCAGCTCAGCCAAAACAG+GGG - chr1.1:12926383-12926402 None:intergenic 45.0%
ATTACGATGCCTGTAGTTCC+CGG + chr1.1:12925443-12925462 MS.gene31725:CDS 45.0%
CAACACCTATTCAGGTGCAA+GGG + chr1.1:12925312-12925331 MS.gene31725:CDS 45.0%
CAATCAGCTCAGCCAAAACA+GGG - chr1.1:12926384-12926403 None:intergenic 45.0%
CAGAAGATTCTCCAACGCAA+AGG + chr1.1:12924879-12924898 MS.gene31725:CDS 45.0%
CGGTTCGTGAATTAGCGAAA+GGG + chr1.1:12925084-12925103 MS.gene31725:CDS 45.0%
CTTGTCTCCATGAATTGCCA+CGG - chr1.1:12926080-12926099 None:intergenic 45.0%
GACTGGAAAGAAGGATGTGT+TGG + chr1.1:12926138-12926157 MS.gene31725:CDS 45.0%
GAGAATCTTCTGAGCTTCCA+TGG - chr1.1:12924871-12924890 None:intergenic 45.0%
GAGGCCTTAACAAGTAGACT+GGG - chr1.1:12924963-12924982 None:intergenic 45.0%
GCTTGAGATTGTCAAGAAGG+GGG + chr1.1:12925619-12925638 MS.gene31725:CDS 45.0%
GTTAGATGAGGCTGATCGAT+TGG + chr1.1:12925727-12925746 MS.gene31725:CDS 45.0%
TCAATCAGCTCAGCCAAAAC+AGG - chr1.1:12926385-12926404 None:intergenic 45.0%
TGAGGCCTTAACAAGTAGAC+TGG - chr1.1:12924964-12924983 None:intergenic 45.0%
TGGGAGGTTGAAGGATATGT+TGG + chr1.1:12925664-12925683 MS.gene31725:CDS 45.0%
! ACCAGTTTTGCCACATCTTC+CGG - chr1.1:12926272-12926291 None:intergenic 45.0%
! ACTGGCATAAGTGGTGTCAA+GGG + chr1.1:12926430-12926449 MS.gene31725:CDS 45.0%
! TCGGTTCGTGAATTAGCGAA+AGG + chr1.1:12925083-12925102 MS.gene31725:CDS 45.0%
! TTTTCTGTAGGCACTCAAGG+AGG - chr1.1:12925973-12925992 None:intergenic 45.0%
!! AAGGGATGTGCGTTTTGTTG+CGG + chr1.1:12926448-12926467 MS.gene31725:CDS 45.0%
ACATAGTTGTTGCCACGCCT+GGG + chr1.1:12925645-12925664 MS.gene31725:CDS 50.0%
ACCGGAAGATGTGGCAAAAC+TGG + chr1.1:12926268-12926287 MS.gene31725:CDS 50.0%
AGACCAAATGGACCTTCACC+GGG - chr1.1:12925464-12925483 None:intergenic 50.0%
ATCAGCTCAGCCAAAACAGG+GGG - chr1.1:12926382-12926401 None:intergenic 50.0%
ATTGGACGTACCGGAAGATG+TGG + chr1.1:12926259-12926278 MS.gene31725:CDS 50.0%
ATTGTCAATGTGGGACGTGC+AGG + chr1.1:12925884-12925903 MS.gene31725:CDS 50.0%
CAAAGCAAAGGTCTGAGCTC+CGG - chr1.1:12925572-12925591 None:intergenic 50.0%
CAGACCAAATGGACCTTCAC+CGG - chr1.1:12925465-12925484 None:intergenic 50.0%
CCAACACCTATTCAGGTGCA+AGG + chr1.1:12925311-12925330 MS.gene31725:CDS 50.0%
CCTTGCACCTGAATAGGTGT+TGG - chr1.1:12925314-12925333 None:intergenic 50.0%
CGTGGCAATTCATGGAGACA+AGG + chr1.1:12926078-12926097 MS.gene31725:CDS 50.0%
GATCATGATGGCAATGCAGG+AGG + chr1.1:12925418-12925437 MS.gene31725:CDS 50.0%
GCTGATCGATTGGTAGATCC+GGG + chr1.1:12925737-12925756 MS.gene31725:CDS 50.0%
GGAATTGCTTTCACGGGTTC+TGG + chr1.1:12925368-12925387 MS.gene31725:CDS 50.0%
GGCTGAGCTGATTGATCCAA+TGG + chr1.1:12926390-12926409 MS.gene31725:CDS 50.0%
GGCTGATCGATTGGTAGATC+CGG + chr1.1:12925736-12925755 MS.gene31725:CDS 50.0%
GTCCATAGGATTGGACGTAC+CGG + chr1.1:12926250-12926269 MS.gene31725:CDS 50.0%
TGTGCAGCCAACACCTATTC+AGG + chr1.1:12925304-12925323 MS.gene31725:CDS 50.0%
TTCCGGTACGTCCAATCCTA+TGG - chr1.1:12926255-12926274 None:intergenic 50.0%
TTGTCAATGTGGGACGTGCA+GGG + chr1.1:12925885-12925904 MS.gene31725:CDS 50.0%
! ACAGAGGATTCCCCCTGTTT+TGG + chr1.1:12926369-12926388 MS.gene31725:CDS 50.0%
! CACGGGTTCTGGCAAAACTT+TGG + chr1.1:12925379-12925398 MS.gene31725:CDS 50.0%
! CACTGGCATAAGTGGTGTCA+AGG + chr1.1:12926429-12926448 MS.gene31725:CDS 50.0%
! GGGTTTTCTGTAGGCACTCA+AGG - chr1.1:12925976-12925995 None:intergenic 50.0%
!! AGGGATGTGCGTTTTGTTGC+GGG + chr1.1:12926449-12926468 MS.gene31725:CDS 50.0%
AAAGGAGGCTTCCACCCAGT+AGG - chr1.1:12925131-12925150 None:intergenic 55.0%
ACGAACCATTGCCTACTGGG+TGG + chr1.1:12925117-12925136 MS.gene31725:CDS 55.0%
ATGCCTGTAGTTCCCGGTGA+AGG + chr1.1:12925449-12925468 MS.gene31725:CDS 55.0%
CACATAGTTGTTGCCACGCC+TGG + chr1.1:12925644-12925663 MS.gene31725:CDS 55.0%
CTTGAAAGGAGTGGAAGCCG+TGG + chr1.1:12926060-12926079 MS.gene31725:CDS 55.0%
GGAAGCCCTTGCACCTGAAT+AGG - chr1.1:12925320-12925339 None:intergenic 55.0%
GTGGAAGCCGTGGCAATTCA+TGG + chr1.1:12926070-12926089 MS.gene31725:CDS 55.0%
GTTCCCGGTGAAGGTCCATT+TGG + chr1.1:12925458-12925477 MS.gene31725:CDS 55.0%
TGTCAATGTGGGACGTGCAG+GGG + chr1.1:12925886-12925905 MS.gene31725:CDS 55.0%
! CAGGAGGTGGGGTTTTCTGT+AGG - chr1.1:12925985-12926004 None:intergenic 55.0%
! TGTTGGCTGCACAATCCCCT+TGG - chr1.1:12925297-12925316 None:intergenic 55.0%
!! TGTGCGTTTTGTTGCGGGCT+TGG + chr1.1:12926454-12926473 MS.gene31725:CDS 55.0%
ATCCTTCAACCTCCCAGGCG+TGG - chr1.1:12925660-12925679 None:intergenic 60.0%
GGACCTTCACCGGGAACTAC+AGG - chr1.1:12925455-12925474 None:intergenic 60.0%
GGCTTCCACCCAGTAGGCAA+TGG - chr1.1:12925125-12925144 None:intergenic 60.0%
GTCCATCGAGGGAATTGGCG+AGG + chr1.1:12925492-12925511 MS.gene31725:CDS 60.0%
TAGTTGTTGCCACGCCTGGG+AGG + chr1.1:12925648-12925667 MS.gene31725:CDS 60.0%
TGCCTCGCCAATTCCCTCGA+TGG - chr1.1:12925497-12925516 None:intergenic 60.0%
CAATGTGGGACGTGCAGGGG+CGG + chr1.1:12925889-12925908 MS.gene31725:CDS 65.0%
TGCCACGCCTGGGAGGTTGA+AGG + chr1.1:12925655-12925674 MS.gene31725:CDS 65.0%
ATGGCGCGACGCTTCGCCAC+AGG - chr1.1:12924852-12924871 None:intergenic 70.0%
!! TGTGGCGAAGCGTCGCGCCA+TGG + chr1.1:12924851-12924870 MS.gene31725:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 12924807 12926582 12924807 ID=MS.gene31725
chr1.1 mRNA 12924807 12926582 12924807 ID=MS.gene31725.t1;Parent=MS.gene31725
chr1.1 exon 12924807 12926582 12924807 ID=MS.gene31725.t1.exon1;Parent=MS.gene31725.t1
chr1.1 CDS 12924807 12926582 12924807 ID=cds.MS.gene31725.t1;Parent=MS.gene31725.t1
Gene Sequence

>MS.gene31725

ATGGTAGCTAAAATGGAAGAAGATGATTATGAGGAGTATATTCCTGTGGCGAAGCGTCGCGCCATGGAAGCTCAGAAGATTCTCCAACGCAAAGGGAAATTATCTGCTCCAATAGATGATGATTCTAGAAAACTAAGTGTGGTTGAAACTAAGCCCAGTCTACTTGTTAAGGCCTCACAGTTAAAGAAAGAACAACCTGAGATTAGTGTTACAGAACAGATTGTTCAACAGGAGAAAGAGATGATTGAGAATTTGTCTGATAAAAAAACCCTTATGTCGGTTCGTGAATTAGCGAAAGGGATCACTTATAACGAACCATTGCCTACTGGGTGGAAGCCTCCTTTGCATATTAGAAGGATGACAAAGAAAGATTGTGATTTGATTCAAAAACAGTGGCATATAATTGTCAATGGTGAAGATATTCCACCCGCGATTAAGAATTTTAAGGATATGAGGTTTCCGGATCCTATTTTGAAGATGTTGAAAACCAAGGGGATTGTGCAGCCAACACCTATTCAGGTGCAAGGGCTTCCTGTTATTTTATCTGGGAGGGATATGATTGGAATTGCTTTCACGGGTTCTGGCAAAACTTTGGTTTTTGTGCTTCCAATGATCATGATGGCAATGCAGGAGGAAATTACGATGCCTGTAGTTCCCGGTGAAGGTCCATTTGGTCTGATTATTTGTCCATCGAGGGAATTGGCGAGGCAAACTTATGAAGTCATTGAACAATTCTTGTTACCTTTGAAGGAATCTGGATATCCGGAGCTCAGACCTTTGCTTTGTATTGGTGGAATTGATACGAGATCACAGCTTGAGATTGTCAAGAAGGGGGTTCACATAGTTGTTGCCACGCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGCAGGTATTTAACGTTAGATGAGGCTGATCGATTGGTAGATCCGGGATTTGAAGATGATATAAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTCTTGTTTTCTGCTACTATGCCAACCAAAATTCAGAATTTTGCTAGAAGTGCTTTGGTAAAACCTATTATTGTCAATGTGGGACGTGCAGGGGCGGCGAATCTTGATGTTATTCAGGAAGTAGAGTATGTCAAACAAGAGGCAAAAATTGTTTACCTCCTTGAGTGCCTACAGAAAACCCCACCTCCTGTTTTGATATTTTGTGAGAATAAGGCAGATGTCGATGACATTCATGAGTATCTTCTCTTGAAAGGAGTGGAAGCCGTGGCAATTCATGGAGACAAGGATCAGGAAGATAGAGAGTATGCTATTTCGTCATTTAAGACTGGAAAGAAGGATGTGTTGGTTGCAACTGATATTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAACTACGACATGCCTGCTGAAATTGAAAATTATGTCCATAGGATTGGACGTACCGGAAGATGTGGCAAAACTGGTATAGCGACAACATTTATAAACAAGAACCAAACTGAGACAACATTGCTTGATTTGAAACACCTTTTGCAAGAAGCAAAACAGAGGATTCCCCCTGTTTTGGCTGAGCTGATTGATCCAATGGAAGATAATGAAGAAATCACTGGCATAAGTGGTGTCAAGGGATGTGCGTTTTGTTGCGGGCTTGGTCATCGTATGCGCGATTGTCCAAAATTAGAACGTCATAATAGTGTGGCAAATGCAAATAATAGGAAGGATTGTTTTGGATCTGGAGGTTACAAAGGAGAAATTTGA
Protein sequence

>MS.gene31725.t1

MVAKMEEDDYEEYIPVAKRRAMEAQKILQRKGKLSAPIDDDSRKLSVVETKPSLLVKASQLKKEQPEISVTEQIVQQEKEMIENLSDKKTLMSVRELAKGITYNEPLPTGWKPPLHIRRMTKKDCDLIQKQWHIIVNGEDIPPAIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEITMPVVPGEGPFGLIICPSRELARQTYEVIEQFLLPLKESGYPELRPLLCIGGIDTRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDPGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGDKDQEDREYAISSFKTGKKDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELIDPMEDNEEITGISGVKGCAFCCGLGHRMRDCPKLERHNSVANANNRKDCFGSGGYKGEI