Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31726.t1 | XP_013466252.1 | 97 | 677 | 17 | 2 | 1 | 677 | 1 | 674 | 0.00E+00 | 1241.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31726.t1 | Q8L860 | 53.7 | 700 | 276 | 17 | 1 | 677 | 1 | 675 | 9.1e-167 | 588.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31726.t1 | A0A072VFS3 | 97.0 | 677 | 17 | 2 | 1 | 677 | 1 | 674 | 0.0e+00 | 1241.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052281 | MS.gene31726 | 0.822503 | 2.29E-53 | -1.69E-46 |
MS.gene059896 | MS.gene31726 | 0.866505 | 2.71E-65 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31726.t1 | MTR_1g026840 | 98.375 | 677 | 8 | 2 | 1 | 677 | 1 | 674 | 0.0 | 1360 |
MS.gene31726.t1 | MTR_3g110108 | 70.349 | 688 | 166 | 9 | 1 | 672 | 1 | 666 | 0.0 | 923 |
MS.gene31726.t1 | MTR_3g110108 | 71.941 | 474 | 105 | 5 | 1 | 461 | 1 | 459 | 0.0 | 694 |
MS.gene31726.t1 | MTR_3g088805 | 50.959 | 365 | 157 | 6 | 4 | 362 | 7 | 355 | 7.06e-107 | 333 |
MS.gene31726.t1 | MTR_7g072310 | 46.026 | 302 | 135 | 3 | 7 | 286 | 15 | 310 | 5.54e-89 | 293 |
MS.gene31726.t1 | MTR_3g097280 | 41.696 | 283 | 149 | 5 | 1 | 277 | 1 | 273 | 8.03e-61 | 211 |
MS.gene31726.t1 | MTR_8g095280 | 39.223 | 283 | 162 | 4 | 1 | 279 | 1 | 277 | 2.85e-58 | 202 |
MS.gene31726.t1 | MTR_7g072310 | 40.574 | 244 | 117 | 3 | 65 | 286 | 1 | 238 | 1.86e-57 | 206 |
MS.gene31726.t1 | MTR_8g095280 | 39.357 | 249 | 141 | 4 | 35 | 279 | 4 | 246 | 7.74e-50 | 178 |
MS.gene31726.t1 | MTR_5g007480 | 31.985 | 272 | 168 | 9 | 2 | 266 | 48 | 309 | 1.40e-33 | 133 |
MS.gene31726.t1 | MTR_4g077940 | 33.574 | 277 | 164 | 11 | 5 | 266 | 51 | 322 | 5.39e-23 | 102 |
MS.gene31726.t1 | MTR_4g077940 | 33.333 | 276 | 166 | 10 | 5 | 266 | 78 | 349 | 5.67e-23 | 102 |
MS.gene31726.t1 | MTR_7g097010 | 28.028 | 289 | 172 | 10 | 5 | 271 | 41 | 315 | 2.42e-20 | 94.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31726.t1 | AT4G32760 | 57.243 | 711 | 234 | 21 | 1 | 677 | 1 | 675 | 0.0 | 689 |
MS.gene31726.t1 | AT4G32760 | 56.901 | 710 | 239 | 19 | 1 | 677 | 1 | 676 | 0.0 | 686 |
MS.gene31726.t1 | AT4G32760 | 65.409 | 477 | 138 | 10 | 1 | 474 | 1 | 453 | 0.0 | 592 |
MS.gene31726.t1 | AT3G08790 | 48.300 | 706 | 237 | 28 | 1 | 677 | 1 | 607 | 6.31e-180 | 525 |
MS.gene31726.t1 | AT1G21380 | 59.259 | 270 | 105 | 3 | 4 | 272 | 7 | 272 | 1.50e-105 | 330 |
MS.gene31726.t1 | AT1G76970 | 57.534 | 292 | 107 | 5 | 4 | 293 | 7 | 283 | 2.00e-104 | 325 |
MS.gene31726.t1 | AT1G76970 | 57.534 | 292 | 107 | 5 | 4 | 293 | 7 | 283 | 2.00e-104 | 325 |
MS.gene31726.t1 | AT1G76970 | 57.534 | 292 | 107 | 5 | 4 | 293 | 7 | 283 | 2.00e-104 | 325 |
MS.gene31726.t1 | AT1G76970 | 57.534 | 292 | 107 | 5 | 4 | 293 | 7 | 283 | 2.00e-104 | 325 |
MS.gene31726.t1 | AT1G76970 | 56.322 | 261 | 97 | 5 | 35 | 293 | 12 | 257 | 1.08e-84 | 273 |
MS.gene31726.t1 | AT1G76970 | 56.322 | 261 | 97 | 5 | 35 | 293 | 12 | 257 | 1.08e-84 | 273 |
MS.gene31726.t1 | AT2G38410 | 44.839 | 310 | 122 | 3 | 7 | 270 | 13 | 319 | 5.36e-77 | 260 |
MS.gene31726.t1 | AT5G01760 | 45.455 | 275 | 141 | 4 | 2 | 271 | 22 | 292 | 1.30e-75 | 253 |
MS.gene31726.t1 | AT5G63640 | 43.223 | 273 | 151 | 3 | 1 | 272 | 1 | 270 | 2.47e-65 | 223 |
MS.gene31726.t1 | AT5G63640 | 43.223 | 273 | 151 | 3 | 1 | 272 | 1 | 270 | 2.47e-65 | 223 |
MS.gene31726.t1 | AT1G76970 | 56.667 | 210 | 74 | 5 | 86 | 293 | 1 | 195 | 4.92e-64 | 216 |
MS.gene31726.t1 | AT5G16880 | 33.577 | 274 | 163 | 11 | 3 | 266 | 49 | 313 | 1.23e-33 | 134 |
MS.gene31726.t1 | AT5G16880 | 33.577 | 274 | 163 | 11 | 3 | 266 | 49 | 313 | 1.23e-33 | 134 |
MS.gene31726.t1 | AT5G16880 | 33.577 | 274 | 163 | 11 | 3 | 266 | 49 | 313 | 1.23e-33 | 134 |
MS.gene31726.t1 | AT5G16880 | 34.524 | 252 | 150 | 10 | 3 | 247 | 49 | 292 | 3.35e-31 | 124 |
MS.gene31726.t1 | AT1G06210 | 28.674 | 279 | 173 | 10 | 1 | 263 | 37 | 305 | 1.30e-21 | 97.8 |
MS.gene31726.t1 | AT1G06210 | 27.907 | 215 | 134 | 7 | 5 | 205 | 41 | 248 | 4.90e-13 | 70.5 |
Find 213 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGCTGCTGTTGTTGATATT+GGG | 0.223296 | 1.1:+12929316 | None:intergenic |
CAACTTACTTCTTTGTTGTT+AGG | 0.228067 | 1.1:+12933053 | None:intergenic |
TCAGGAACTTCTACTCAAAA+TGG | 0.249040 | 1.1:-12930514 | MS.gene31726:CDS |
GCATTAACTGATTCAATGTT+TGG | 0.270331 | 1.1:+12929612 | None:intergenic |
CGTAGCCATAACCTGCAAAT+TGG | 0.286960 | 1.1:+12928521 | None:intergenic |
TCTGCTGCTGTTGTTGATAT+TGG | 0.288831 | 1.1:+12929315 | None:intergenic |
ACAGAATGCACATGGTATTA+TGG | 0.289964 | 1.1:-12933108 | MS.gene31726:CDS |
TGTTGATATTGGGGAGTAAA+TGG | 0.299192 | 1.1:+12929326 | None:intergenic |
GATACTTGGCAAGAAGCTTT+TGG | 0.303182 | 1.1:-12934268 | MS.gene31726:CDS |
CCCAATGTTGGTGGCCAATC+TGG | 0.309604 | 1.1:-12929350 | MS.gene31726:CDS |
ACAGGAGGTTATTGTTGATT+TGG | 0.312747 | 1.1:-12931428 | MS.gene31726:CDS |
TCCTCTTCTGGTGCTGAAGC+AGG | 0.313482 | 1.1:-12929638 | MS.gene31726:CDS |
AAGCCAGAGGATAAGTTATT+CGG | 0.322015 | 1.1:-12928364 | MS.gene31726:CDS |
GGAAACCAATTTGCAGGTTA+TGG | 0.323327 | 1.1:-12928526 | MS.gene31726:CDS |
GATGCTCCTTTGGTTGATAC+TGG | 0.332313 | 1.1:-12930439 | MS.gene31726:CDS |
AGGGCATTCTGATCATTTAC+AGG | 0.335396 | 1.1:+12929443 | None:intergenic |
GTCCCACTTGGGATCAGCTT+TGG | 0.346784 | 1.1:+12929550 | None:intergenic |
AACTTACTTCTTTGTTGTTA+GGG | 0.355207 | 1.1:+12933054 | None:intergenic |
GGTGAAAATAGTAAAGAAAA+AGG | 0.355667 | 1.1:-12934426 | MS.gene31726:intron |
GCGAAACTCCAGTTCCAATC+AGG | 0.356777 | 1.1:-12928422 | MS.gene31726:CDS |
TTCTCTTTGACATGAAAATC+AGG | 0.358337 | 1.1:+12934307 | None:intergenic |
GCAAGTGAAGTATCTGCTTT+TGG | 0.360775 | 1.1:+12929500 | None:intergenic |
ATGAAGAAATATTACCATAA+GGG | 0.367323 | 1.1:+12929153 | None:intergenic |
CAACAACCAGCTTCCCCTTA+TGG | 0.367428 | 1.1:-12929167 | MS.gene31726:intron |
TGTAGATATTGATGCTCCTT+TGG | 0.367957 | 1.1:-12930449 | MS.gene31726:CDS |
GCCACCAACATTGGGTTGTT+GGG | 0.373847 | 1.1:+12929358 | None:intergenic |
TATATGTGCAGGTCCTCTTC+TGG | 0.376172 | 1.1:-12929650 | MS.gene31726:intron |
GCAGAGGCCTCAGCTGCGTC+TGG | 0.387629 | 1.1:+12933872 | None:intergenic |
CAGCATATGCAAGGTGTTGC+AGG | 0.388101 | 1.1:-12928622 | MS.gene31726:CDS |
ATGTATGGAAACCAATTTGC+AGG | 0.388230 | 1.1:-12928532 | MS.gene31726:CDS |
AGCCAGAGGATAAGTTATTC+GGG | 0.389324 | 1.1:-12928363 | MS.gene31726:CDS |
GCATTTGGCACATTTCCATT+GGG | 0.395588 | 1.1:+12929266 | None:intergenic |
CATTAACTGATTCAATGTTT+GGG | 0.397291 | 1.1:+12929613 | None:intergenic |
CCAGGTTGGAAGCAATCAAT+TGG | 0.397618 | 1.1:-12928656 | MS.gene31726:CDS |
GGCCACCAACATTGGGTTGT+TGG | 0.401898 | 1.1:+12929357 | None:intergenic |
TACATTTGCTGCTCAATGTA+TGG | 0.403276 | 1.1:+12928475 | None:intergenic |
GATCATTGCCGCCACCTCCC+TGG | 0.405167 | 1.1:-12928876 | MS.gene31726:CDS |
ACAGAGTTCCGCAAATCATC+AGG | 0.405602 | 1.1:-12928761 | MS.gene31726:CDS |
CTACGGTCAACAACAACAAC+AGG | 0.411293 | 1.1:-12928503 | MS.gene31726:CDS |
TACTGCTTCTTGTAGATACT+TGG | 0.411730 | 1.1:-12934282 | MS.gene31726:CDS |
GTCGGACGGTTGAGCTTCCC+AGG | 0.416365 | 1.1:+12928858 | None:intergenic |
GGGCCTCAAGCAATGGGTTA+TGG | 0.416438 | 1.1:-12928739 | MS.gene31726:CDS |
TTTGCTTATTTCAGCGTGCC+GGG | 0.417359 | 1.1:-12934000 | MS.gene31726:intron |
CTCGATGTTCATGGCCCAAT+CGG | 0.418868 | 1.1:+12937653 | None:intergenic |
TGCATTTGGCACATTTCCAT+TGG | 0.424517 | 1.1:+12929265 | None:intergenic |
GTCACAGATCTCGATGTTCA+TGG | 0.424827 | 1.1:+12937644 | None:intergenic |
GAAGTCAATGGTTGTGTTTG+TGG | 0.430137 | 1.1:+12933929 | None:intergenic |
TCACTTGCTCTTGTTCCTCT+AGG | 0.432550 | 1.1:-12929485 | MS.gene31726:CDS |
TTGATAGGTGCGCAAAATAG+TGG | 0.434876 | 1.1:-12928898 | MS.gene31726:intron |
GACATATGGCCGTTAGCATT+TGG | 0.438245 | 1.1:+12928691 | None:intergenic |
GGATGAATCACTGCTATGCC+AGG | 0.440080 | 1.1:-12930593 | MS.gene31726:CDS |
CCAACATTGGGTTGTTGGGT+TGG | 0.440486 | 1.1:+12929362 | None:intergenic |
CGTATAACCCTGATTGGAAC+TGG | 0.441053 | 1.1:+12928414 | None:intergenic |
TCTGTTTCAGGGGCTTAGAC+AGG | 0.441192 | 1.1:-12931446 | MS.gene31726:intron |
GCATCCGCGTCACGTATGTT+TGG | 0.446206 | 1.1:+12933899 | None:intergenic |
TGCAGGTCATTACATGGGTA+TGG | 0.449608 | 1.1:-12928605 | MS.gene31726:CDS |
TATACGTCTTATGTTCCATC+GGG | 0.450942 | 1.1:-12928397 | MS.gene31726:CDS |
TTGTTGGGTTGGCTGAGTAT+TGG | 0.455421 | 1.1:+12929373 | None:intergenic |
TATGCTCATCGGTCCCGATT+GGG | 0.455894 | 1.1:-12937667 | MS.gene31726:CDS |
ATCATTGCCGCCACCTCCCT+GGG | 0.456238 | 1.1:-12928875 | MS.gene31726:CDS |
TACATTGAGCAGCAAATGTA+TGG | 0.459475 | 1.1:-12928472 | MS.gene31726:CDS |
TACCGAGGTAAACCTGCATT+TGG | 0.461477 | 1.1:+12929251 | None:intergenic |
AACTTATCCTCTGGCTTGGA+AGG | 0.462554 | 1.1:+12928370 | None:intergenic |
GGAGGTTATTGTTGATTTGG+TGG | 0.464547 | 1.1:-12931425 | MS.gene31726:CDS |
ATAAGACGTATAACCCTGAT+TGG | 0.464637 | 1.1:+12928408 | None:intergenic |
CTTACGTAGTTGAGTTTACA+AGG | 0.465510 | 1.1:+12931368 | None:intergenic |
CCAGATTGGCCACCAACATT+GGG | 0.465571 | 1.1:+12929350 | None:intergenic |
ATCAGAGATGGTGAATTCTA+TGG | 0.468129 | 1.1:-12937709 | None:intergenic |
GGCAGGTACCGCTGAACCAT+TGG | 0.468535 | 1.1:+12929571 | None:intergenic |
GACAATGGCAGTCCGGTAGC+AGG | 0.472779 | 1.1:-12928838 | MS.gene31726:CDS |
TTGGTTGATACTGGAGATAC+TGG | 0.474645 | 1.1:-12930430 | MS.gene31726:CDS |
CACTTGGGATCAGCTTTGGC+AGG | 0.476176 | 1.1:+12929554 | None:intergenic |
ACCAGATTGGCCACCAACAT+TGG | 0.476822 | 1.1:+12929349 | None:intergenic |
ATCTGCAGCGTCTACTTGCC+AGG | 0.479242 | 1.1:-12930552 | MS.gene31726:CDS |
GACATGCTCAATCATGATCC+TGG | 0.479397 | 1.1:-12937624 | MS.gene31726:CDS |
CCAATTGATTGCTTCCAACC+TGG | 0.480702 | 1.1:+12928656 | None:intergenic |
ATGTATCCACAACAGATGTA+TGG | 0.480885 | 1.1:-12928547 | MS.gene31726:CDS |
GGTTATTGACTGCTGACATA+TGG | 0.481015 | 1.1:+12928677 | None:intergenic |
TAAACATTACCAGCAGTTCC+TGG | 0.483312 | 1.1:+12934206 | None:intergenic |
ACCACTGAGCAGGTCCCACT+TGG | 0.485032 | 1.1:+12929538 | None:intergenic |
TGCTACCGGACTGCCATTGT+CGG | 0.487925 | 1.1:+12928840 | None:intergenic |
GGTTGAGCTTCCCAGGGAGG+TGG | 0.490655 | 1.1:+12928865 | None:intergenic |
AGCTCCTGCATGGAATGGTC+AGG | 0.492373 | 1.1:-12929201 | MS.gene31726:CDS |
TTGAGGCCCCTGATGATTTG+CGG | 0.494420 | 1.1:+12928753 | None:intergenic |
ATTTGCTTATTTCAGCGTGC+CGG | 0.497309 | 1.1:-12934001 | MS.gene31726:intron |
TGAGCTTCCCAGGGAGGTGG+CGG | 0.498999 | 1.1:+12928868 | None:intergenic |
TCCCCGAATAACTTATCCTC+TGG | 0.499326 | 1.1:+12928361 | None:intergenic |
TCAAAATGGAAATCAGATAG+AGG | 0.499420 | 1.1:-12930500 | MS.gene31726:CDS |
TGCTGCATACCAGGAACTGC+TGG | 0.500884 | 1.1:-12934215 | MS.gene31726:intron |
TGGTTTCCATACATCTGTTG+TGG | 0.501498 | 1.1:+12928541 | None:intergenic |
AAAGGTATCAAGAAGCGGAT+TGG | 0.503120 | 1.1:-12936527 | MS.gene31726:CDS |
TGATCATTTACAGGAGTGGC+AGG | 0.505960 | 1.1:+12929452 | None:intergenic |
ACAAGTTGCCGAGCAGATGC+AGG | 0.506068 | 1.1:+12930469 | None:intergenic |
GCAATGGGTTATGGCCAGGC+TGG | 0.509475 | 1.1:-12928730 | MS.gene31726:CDS |
CGAAACTCCAGTTCCAATCA+GGG | 0.509903 | 1.1:-12928421 | MS.gene31726:CDS |
AATGGAAATGTGCCAAATGC+AGG | 0.510995 | 1.1:-12929263 | MS.gene31726:CDS |
CCTCTTCTGGTGCTGAAGCA+GGG | 0.511267 | 1.1:-12929637 | MS.gene31726:CDS |
TCAAGCAATGGGTTATGGCC+AGG | 0.512254 | 1.1:-12928734 | MS.gene31726:CDS |
AGGTGTTGCAGGTCATTACA+TGG | 0.512490 | 1.1:-12928611 | MS.gene31726:CDS |
TCATCAGGGGCCTCAAGCAA+TGG | 0.513105 | 1.1:-12928746 | MS.gene31726:CDS |
CATCAGGGGCCTCAAGCAAT+GGG | 0.515377 | 1.1:-12928745 | MS.gene31726:CDS |
TGTGGATACTGAGGTGGTAG+TGG | 0.515502 | 1.1:+12928805 | None:intergenic |
ACATACGTGACGCGGATGCT+CGG | 0.517270 | 1.1:-12933895 | MS.gene31726:CDS |
TGACTGAATTGAGGTGGTTG+TGG | 0.519401 | 1.1:+12928787 | None:intergenic |
CCTGCGCCAGCTACTTCCAA+TGG | 0.520406 | 1.1:-12929587 | MS.gene31726:CDS |
ACCGTCCGACAATGGCAGTC+CGG | 0.520704 | 1.1:-12928845 | MS.gene31726:CDS |
TGCTGCTGTTGTTGATATTG+GGG | 0.526913 | 1.1:+12929317 | None:intergenic |
TTACAAACATACCTTAGCGT+TGG | 0.528507 | 1.1:+12933836 | None:intergenic |
TCGATGTTCATGGCCCAATC+GGG | 0.528578 | 1.1:+12937654 | None:intergenic |
TGCTCGGCCAGACGCAGCTG+AGG | 0.528960 | 1.1:-12933879 | MS.gene31726:CDS |
GAATAACTTATCCTCTGGCT+TGG | 0.531180 | 1.1:+12928366 | None:intergenic |
GTTTGTGGAGGAGTGAATAC+AGG | 0.534401 | 1.1:+12933944 | None:intergenic |
CAATTTGCAGGTTATGGCTA+CGG | 0.534873 | 1.1:-12928520 | MS.gene31726:CDS |
ATATTACCATAAGGGGAAGC+TGG | 0.535454 | 1.1:+12929161 | None:intergenic |
ATATGCTCATCGGTCCCGAT+TGG | 0.536409 | 1.1:-12937668 | MS.gene31726:CDS |
TGAAGAAATATTACCATAAG+GGG | 0.538079 | 1.1:+12929154 | None:intergenic |
ACAATACTATGCTGCATACC+AGG | 0.542835 | 1.1:-12934224 | MS.gene31726:CDS |
CATAGTTATCACCACTGAGC+AGG | 0.544400 | 1.1:+12929528 | None:intergenic |
CATCATTGAGAGCTAGTCCC+TGG | 0.544403 | 1.1:+12930575 | None:intergenic |
GGCTTGGAAGGCTTCCCCGA+TGG | 0.547370 | 1.1:+12928382 | None:intergenic |
ACCCAACAACCCAATGTTGG+TGG | 0.548389 | 1.1:-12929359 | MS.gene31726:CDS |
GCTGAACCATTGGAAGTAGC+TGG | 0.548714 | 1.1:+12929581 | None:intergenic |
GAGAGACGTGCTTCATGAGA+TGG | 0.548861 | 1.1:-12934447 | MS.gene31726:CDS |
TGGTATTATGGATGTTCTTG+CGG | 0.553127 | 1.1:-12933096 | MS.gene31726:CDS |
ATTCGGGGATCTTGTGGACC+TGG | 0.555355 | 1.1:-12928347 | MS.gene31726:CDS |
TTATACGTCTTATGTTCCAT+CGG | 0.555460 | 1.1:-12928398 | MS.gene31726:CDS |
CAGGTTGGAAGCAATCAATT+GGG | 0.555583 | 1.1:-12928655 | MS.gene31726:CDS |
TAAGTTATTCGGGGATCTTG+TGG | 0.557924 | 1.1:-12928353 | MS.gene31726:CDS |
TGCAGTGATTGCTCATACCG+AGG | 0.559270 | 1.1:+12929236 | None:intergenic |
TTTGGAGGGTATGAAGTCAA+TGG | 0.561502 | 1.1:+12933917 | None:intergenic |
CCCTGCTTCAGCACCAGAAG+AGG | 0.561683 | 1.1:+12929637 | None:intergenic |
TACATGCTACCAGCTCGACC+TGG | 0.562479 | 1.1:+12928301 | None:intergenic |
AAAACAACTCCAGGTCGAGC+TGG | 0.563885 | 1.1:-12928310 | MS.gene31726:CDS |
GGATACTGACCACCTGCTAC+CGG | 0.564121 | 1.1:+12928826 | None:intergenic |
GGGGAGTAAATGGACCAGAT+TGG | 0.566794 | 1.1:+12929336 | None:intergenic |
TCCGCGTCACGTATGTTTGG+AGG | 0.570227 | 1.1:+12933902 | None:intergenic |
GTGAAGCCGAAAACAACTCC+AGG | 0.572576 | 1.1:-12928319 | MS.gene31726:CDS |
ACCGGACTGCCATTGTCGGA+CGG | 0.572853 | 1.1:+12928844 | None:intergenic |
GTTTCAGGGGCTTAGACAGG+AGG | 0.574938 | 1.1:-12931443 | MS.gene31726:intron |
AATCTGAATTTCCAACGCTA+AGG | 0.577254 | 1.1:-12933847 | MS.gene31726:intron |
CAGATTGTTCAGATCTCTGA+GGG | 0.581230 | 1.1:+12933969 | None:intergenic |
TATTGTGGATATCTTGCCCT+CGG | 0.582804 | 1.1:+12934241 | None:intergenic |
TGACAAAATAGATTCATGCC+TGG | 0.586132 | 1.1:+12930534 | None:intergenic |
CAGCAGACATTCACATCTCA+AGG | 0.586696 | 1.1:-12929299 | MS.gene31726:CDS |
TATGGTTATTAGGCAAGCAA+AGG | 0.589486 | 1.1:-12936558 | MS.gene31726:intron |
GATACTGGCAAACAAACTGA+TGG | 0.591438 | 1.1:-12930415 | MS.gene31726:CDS |
AGTACAGCTCCTGCATGGAA+TGG | 0.592193 | 1.1:-12929206 | MS.gene31726:CDS |
CACAAAGTACAGCTCCTGCA+TGG | 0.595385 | 1.1:-12929211 | MS.gene31726:CDS |
CATTTGGCACATTTCCATTG+GGG | 0.595503 | 1.1:+12929267 | None:intergenic |
CAGAGTTCCGCAAATCATCA+GGG | 0.596713 | 1.1:-12928760 | MS.gene31726:CDS |
ATGGGTTATGGCCAGGCTGG+TGG | 0.596992 | 1.1:-12928727 | MS.gene31726:CDS |
TGGCCATAACCCATTGCTTG+AGG | 0.597077 | 1.1:+12928736 | None:intergenic |
GCAACCTGACCATTCCATGC+AGG | 0.597585 | 1.1:+12929197 | None:intergenic |
CTCTGTACATGACTGAATTG+AGG | 0.598943 | 1.1:+12928778 | None:intergenic |
TCTCTGAGGGAATACTGCCC+CGG | 0.599149 | 1.1:+12933982 | None:intergenic |
ACCGATGAGCATATCGCTCG+TGG | 0.599653 | 1.1:+12937677 | None:intergenic |
CAAGCAAAGGATGTTGTCAA+AGG | 0.602108 | 1.1:-12936545 | MS.gene31726:CDS |
CCAACCCAACAACCCAATGT+TGG | 0.603250 | 1.1:-12929362 | MS.gene31726:CDS |
TCAGCAGTCAATAACCAGGT+TGG | 0.603323 | 1.1:-12928670 | MS.gene31726:CDS |
CCCTCCAAACATACGTGACG+CGG | 0.605840 | 1.1:-12933903 | MS.gene31726:CDS |
TGGTATGCAGCATAGTATTG+TGG | 0.606322 | 1.1:+12934226 | None:intergenic |
ATTCTGATCATTTACAGGAG+TGG | 0.607584 | 1.1:+12929448 | None:intergenic |
TGTGGATACATAGAAGCCGC+AGG | 0.607780 | 1.1:+12928559 | None:intergenic |
CCGCGTCACGTATGTTTGGA+GGG | 0.608608 | 1.1:+12933903 | None:intergenic |
CCATTGGAAGTAGCTGGCGC+AGG | 0.610262 | 1.1:+12929587 | None:intergenic |
TGCCAAATGCAGGTTTACCT+CGG | 0.613570 | 1.1:-12929253 | MS.gene31726:CDS |
CAACACCTTGCATATGCTGA+GGG | 0.616302 | 1.1:+12928626 | None:intergenic |
TGAGGTGGTTGTGGATACTG+AGG | 0.619141 | 1.1:+12928796 | None:intergenic |
CTTCACTTACAGTTAGTGCA+AGG | 0.620099 | 1.1:+12936480 | None:intergenic |
GTCAATGGTTGTGTTTGTGG+AGG | 0.621322 | 1.1:+12933932 | None:intergenic |
AGCTACTTCCAATGGTTCAG+CGG | 0.624271 | 1.1:-12929579 | MS.gene31726:CDS |
GCATATACATACCACCAGCC+TGG | 0.624660 | 1.1:+12928716 | None:intergenic |
TTGTCAAAGGTATCAAGAAG+CGG | 0.627413 | 1.1:-12936532 | MS.gene31726:CDS |
TATATGCAGCCAAATGCTAA+CGG | 0.627905 | 1.1:-12928700 | MS.gene31726:CDS |
GAAGCTCAACCGTCCGACAA+TGG | 0.631535 | 1.1:-12928853 | MS.gene31726:CDS |
ATGCACCCTCAGCATATGCA+AGG | 0.632651 | 1.1:-12928631 | MS.gene31726:CDS |
ATACTGGCAAACAAACTGAT+GGG | 0.633087 | 1.1:-12930414 | MS.gene31726:CDS |
GACGGTTGAGCTTCCCAGGG+AGG | 0.633857 | 1.1:+12928862 | None:intergenic |
TTGCTTATTTCAGCGTGCCG+GGG | 0.634786 | 1.1:-12933999 | MS.gene31726:intron |
TCGGACGGTTGAGCTTCCCA+GGG | 0.639053 | 1.1:+12928859 | None:intergenic |
ATTCAAAGCCTGCATCTGCT+CGG | 0.639862 | 1.1:-12930477 | MS.gene31726:CDS |
TGGAAATTCAGATTCTGCAG+AGG | 0.640110 | 1.1:+12933856 | None:intergenic |
TCATTTACAGGAGTGGCAGG+TGG | 0.640914 | 1.1:+12929455 | None:intergenic |
GGTGGTTGTGGATACTGAGG+TGG | 0.641647 | 1.1:+12928799 | None:intergenic |
GATGAATCACTGCTATGCCA+GGG | 0.646115 | 1.1:-12930592 | MS.gene31726:CDS |
GCCACGAGCGATATGCTCAT+CGG | 0.646284 | 1.1:-12937678 | MS.gene31726:CDS |
GAAACAATTATAAAGAACTG+TGG | 0.650766 | 1.1:-12934497 | MS.gene31726:CDS |
CTGCCAAAGCTGATCCCAAG+TGG | 0.653739 | 1.1:-12929553 | MS.gene31726:CDS |
ACATGCTCAATCATGATCCT+GGG | 0.654067 | 1.1:-12937623 | MS.gene31726:intron |
CCACTGAGCAGGTCCCACTT+GGG | 0.655885 | 1.1:+12929539 | None:intergenic |
AATGGCAGTCCGGTAGCAGG+TGG | 0.657738 | 1.1:-12928835 | MS.gene31726:CDS |
GCAACACCTTGCATATGCTG+AGG | 0.658508 | 1.1:+12928625 | None:intergenic |
TATGTCAGCAGTCAATAACC+AGG | 0.660036 | 1.1:-12928674 | MS.gene31726:CDS |
GTATCTCCAGTATCAACCAA+AGG | 0.662112 | 1.1:+12930433 | None:intergenic |
TCAAGCACAAGGTGGTCCTG+CGG | 0.662796 | 1.1:-12928575 | MS.gene31726:CDS |
TGCCAAAGCTGATCCCAAGT+GGG | 0.663726 | 1.1:-12929552 | MS.gene31726:CDS |
GCAGGTGGTTGTTCTCCTAG+AGG | 0.668111 | 1.1:+12929470 | None:intergenic |
GGGGAAGCCTTCCAAGCCAG+AGG | 0.670946 | 1.1:-12928377 | MS.gene31726:CDS |
TAGAACATACAAGCAAAGAG+TGG | 0.671247 | 1.1:-12931395 | MS.gene31726:CDS |
GGTGTTGCAGGTCATTACAT+GGG | 0.674541 | 1.1:-12928610 | MS.gene31726:CDS |
GCCAGAGGATAAGTTATTCG+GGG | 0.692773 | 1.1:-12928362 | MS.gene31726:CDS |
GCAGATTGTTCAGATCTCTG+AGG | 0.694743 | 1.1:+12933968 | None:intergenic |
CTGGCAAACAAACTGATGGG+AGG | 0.698540 | 1.1:-12930411 | MS.gene31726:intron |
ATGGCTTCACATCAAGCACA+AGG | 0.698886 | 1.1:-12928586 | MS.gene31726:CDS |
AGAGTTCCGCAAATCATCAG+GGG | 0.699530 | 1.1:-12928759 | MS.gene31726:CDS |
TACGGTCAACAACAACAACA+GGG | 0.702741 | 1.1:-12928502 | MS.gene31726:CDS |
CCCAAGTGGGACCTGCTCAG+TGG | 0.703675 | 1.1:-12929539 | MS.gene31726:CDS |
ACTGAAATACAGAATGCACA+TGG | 0.716588 | 1.1:-12933116 | MS.gene31726:CDS |
CAGACATTCACATCTCAAGG+TGG | 0.719363 | 1.1:-12929296 | MS.gene31726:CDS |
TGTACATGACTGAATTGAGG+TGG | 0.724888 | 1.1:+12928781 | None:intergenic |
GGCTGAGTATTGGCAGACGT+AGG | 0.734336 | 1.1:+12929383 | None:intergenic |
GCTTCACATCAAGCACAAGG+TGG | 0.738277 | 1.1:-12928583 | MS.gene31726:CDS |
ATACGTCTTATGTTCCATCG+GGG | 0.761345 | 1.1:-12928396 | MS.gene31726:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 12928300 | 12937724 | 12928300 | ID=MS.gene31726 |
chr1.1 | mRNA | 12928300 | 12937724 | 12928300 | ID=MS.gene31726.t1;Parent=MS.gene31726 |
chr1.1 | exon | 12937624 | 12937724 | 12937624 | ID=MS.gene31726.t1.exon1;Parent=MS.gene31726.t1 |
chr1.1 | CDS | 12937624 | 12937724 | 12937624 | ID=cds.MS.gene31726.t1;Parent=MS.gene31726.t1 |
chr1.1 | exon | 12936490 | 12936568 | 12936490 | ID=MS.gene31726.t1.exon2;Parent=MS.gene31726.t1 |
chr1.1 | CDS | 12936490 | 12936568 | 12936490 | ID=cds.MS.gene31726.t1;Parent=MS.gene31726.t1 |
chr1.1 | exon | 12934427 | 12934525 | 12934427 | ID=MS.gene31726.t1.exon3;Parent=MS.gene31726.t1 |
chr1.1 | CDS | 12934427 | 12934525 | 12934427 | ID=cds.MS.gene31726.t1;Parent=MS.gene31726.t1 |
chr1.1 | exon | 12934216 | 12934329 | 12934216 | ID=MS.gene31726.t1.exon4;Parent=MS.gene31726.t1 |
chr1.1 | CDS | 12934216 | 12934329 | 12934216 | ID=cds.MS.gene31726.t1;Parent=MS.gene31726.t1 |
chr1.1 | exon | 12933848 | 12934008 | 12933848 | ID=MS.gene31726.t1.exon5;Parent=MS.gene31726.t1 |
chr1.1 | CDS | 12933848 | 12934008 | 12933848 | ID=cds.MS.gene31726.t1;Parent=MS.gene31726.t1 |
chr1.1 | exon | 12933061 | 12933142 | 12933061 | ID=MS.gene31726.t1.exon6;Parent=MS.gene31726.t1 |
chr1.1 | CDS | 12933061 | 12933142 | 12933061 | ID=cds.MS.gene31726.t1;Parent=MS.gene31726.t1 |
chr1.1 | exon | 12931373 | 12931458 | 12931373 | ID=MS.gene31726.t1.exon7;Parent=MS.gene31726.t1 |
chr1.1 | CDS | 12931373 | 12931458 | 12931373 | ID=cds.MS.gene31726.t1;Parent=MS.gene31726.t1 |
chr1.1 | exon | 12930412 | 12930615 | 12930412 | ID=MS.gene31726.t1.exon8;Parent=MS.gene31726.t1 |
chr1.1 | CDS | 12930412 | 12930615 | 12930412 | ID=cds.MS.gene31726.t1;Parent=MS.gene31726.t1 |
chr1.1 | exon | 12929168 | 12929661 | 12929168 | ID=MS.gene31726.t1.exon9;Parent=MS.gene31726.t1 |
chr1.1 | CDS | 12929168 | 12929661 | 12929168 | ID=cds.MS.gene31726.t1;Parent=MS.gene31726.t1 |
chr1.1 | exon | 12928300 | 12928913 | 12928300 | ID=MS.gene31726.t1.exon10;Parent=MS.gene31726.t1 |
chr1.1 | CDS | 12928300 | 12928913 | 12928300 | ID=cds.MS.gene31726.t1;Parent=MS.gene31726.t1 |
Gene Sequence |
Protein sequence |