Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32052.t1 | XP_003590652.1 | 98.3 | 640 | 11 | 0 | 1 | 640 | 1 | 640 | 0.00E+00 | 1240.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32052.t1 | F4J0W4 | 52.5 | 629 | 298 | 1 | 13 | 640 | 15 | 643 | 1.5e-195 | 684.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32052.t1 | G7IED4 | 98.3 | 640 | 11 | 0 | 1 | 640 | 1 | 640 | 0.0e+00 | 1240.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052256 | MS.gene32052 | 0.801846 | 7.43E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene44096 | MS.gene32052 | PPI |
MS.gene055574 | MS.gene32052 | PPI |
MS.gene005228 | MS.gene32052 | PPI |
MS.gene056037 | MS.gene32052 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32052.t1 | MTR_1g072280 | 98.281 | 640 | 11 | 0 | 1 | 640 | 1 | 640 | 0.0 | 1295 |
MS.gene32052.t1 | MTR_7g094810 | 67.937 | 630 | 200 | 2 | 13 | 640 | 9 | 638 | 0.0 | 867 |
MS.gene32052.t1 | MTR_7g094810 | 67.508 | 634 | 200 | 3 | 13 | 640 | 9 | 642 | 0.0 | 862 |
MS.gene32052.t1 | MTR_7g094810 | 69.414 | 546 | 167 | 0 | 13 | 558 | 9 | 554 | 0.0 | 774 |
MS.gene32052.t1 | MTR_7g094810 | 68.909 | 550 | 167 | 1 | 13 | 558 | 9 | 558 | 0.0 | 768 |
MS.gene32052.t1 | MTR_1g082870 | 51.510 | 629 | 303 | 2 | 13 | 640 | 17 | 644 | 0.0 | 671 |
MS.gene32052.t1 | MTR_7g094810 | 67.615 | 457 | 148 | 0 | 13 | 469 | 9 | 465 | 0.0 | 634 |
MS.gene32052.t1 | MTR_5g040690 | 49.416 | 599 | 300 | 2 | 13 | 611 | 18 | 613 | 0.0 | 607 |
MS.gene32052.t1 | MTR_5g034580 | 47.115 | 624 | 308 | 5 | 13 | 634 | 11 | 614 | 0.0 | 593 |
MS.gene32052.t1 | MTR_4g129890 | 44.601 | 639 | 344 | 5 | 9 | 640 | 16 | 651 | 0.0 | 541 |
MS.gene32052.t1 | MTR_4g129310 | 40.847 | 590 | 320 | 5 | 21 | 589 | 29 | 610 | 1.38e-148 | 444 |
MS.gene32052.t1 | MTR_5g034140 | 46.623 | 459 | 239 | 3 | 169 | 626 | 13 | 466 | 2.83e-141 | 421 |
MS.gene32052.t1 | MTR_5g034660 | 44.586 | 314 | 142 | 2 | 302 | 615 | 7 | 288 | 3.39e-82 | 262 |
MS.gene32052.t1 | MTR_8g010670 | 31.940 | 335 | 183 | 9 | 13 | 322 | 34 | 348 | 3.17e-31 | 128 |
MS.gene32052.t1 | MTR_4g123543 | 38.547 | 179 | 84 | 4 | 484 | 637 | 4 | 181 | 1.93e-29 | 115 |
MS.gene32052.t1 | MTR_4g073250 | 28.571 | 175 | 115 | 4 | 13 | 178 | 7 | 180 | 3.78e-13 | 68.9 |
MS.gene32052.t1 | MTR_4g105060 | 40.964 | 83 | 49 | 0 | 210 | 292 | 17 | 99 | 1.60e-12 | 64.3 |
MS.gene32052.t1 | MTR_5g022600 | 26.842 | 190 | 95 | 6 | 13 | 176 | 7 | 178 | 2.65e-11 | 63.5 |
MS.gene32052.t1 | MTR_8g075240 | 27.746 | 173 | 115 | 4 | 13 | 176 | 7 | 178 | 6.05e-11 | 62.8 |
MS.gene32052.t1 | MTR_6g087980 | 25.389 | 193 | 102 | 5 | 11 | 178 | 5 | 180 | 7.71e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32052.t1 | AT3G63150 | 52.464 | 629 | 298 | 1 | 13 | 640 | 15 | 643 | 0.0 | 701 |
MS.gene32052.t1 | AT5G27540 | 52.951 | 610 | 285 | 2 | 11 | 619 | 16 | 624 | 0.0 | 655 |
MS.gene32052.t1 | AT5G27540 | 52.951 | 610 | 285 | 2 | 11 | 619 | 16 | 624 | 0.0 | 655 |
MS.gene32052.t1 | AT3G05310 | 44.757 | 639 | 341 | 7 | 11 | 640 | 13 | 648 | 0.0 | 556 |
MS.gene32052.t1 | AT3G05310 | 46.047 | 506 | 261 | 7 | 144 | 640 | 1 | 503 | 9.29e-151 | 445 |
MS.gene32052.t1 | AT3G05310 | 47.761 | 469 | 236 | 5 | 144 | 604 | 1 | 468 | 3.46e-148 | 439 |
MS.gene32052.t1 | AT4G35020 | 29.545 | 176 | 112 | 5 | 13 | 178 | 7 | 180 | 3.77e-12 | 66.2 |
MS.gene32052.t1 | AT4G35020 | 29.545 | 176 | 112 | 5 | 13 | 178 | 7 | 180 | 3.77e-12 | 66.2 |
MS.gene32052.t1 | AT4G35020 | 29.545 | 176 | 112 | 5 | 13 | 178 | 7 | 180 | 3.77e-12 | 66.2 |
MS.gene32052.t1 | AT5G45970 | 27.746 | 173 | 115 | 4 | 13 | 176 | 7 | 178 | 4.42e-12 | 66.2 |
MS.gene32052.t1 | AT5G62880 | 27.027 | 185 | 111 | 5 | 11 | 179 | 7 | 183 | 1.11e-11 | 65.1 |
MS.gene32052.t1 | AT4G28950 | 26.178 | 191 | 101 | 5 | 11 | 178 | 5 | 178 | 1.68e-11 | 64.7 |
MS.gene32052.t1 | AT3G51300 | 29.885 | 174 | 110 | 5 | 13 | 176 | 7 | 178 | 2.52e-11 | 63.9 |
MS.gene32052.t1 | AT1G20090 | 27.586 | 174 | 114 | 5 | 13 | 176 | 6 | 177 | 5.10e-11 | 62.8 |
MS.gene32052.t1 | AT2G17800 | 28.736 | 174 | 112 | 5 | 13 | 176 | 7 | 178 | 5.34e-11 | 62.8 |
MS.gene32052.t1 | AT2G17800 | 28.736 | 174 | 112 | 5 | 13 | 176 | 7 | 178 | 5.34e-11 | 62.8 |
MS.gene32052.t1 | AT1G75840 | 28.161 | 174 | 113 | 5 | 13 | 176 | 7 | 178 | 5.93e-11 | 62.8 |
Find 140 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGATAAGGTTCACCTTTC+TGG | 0.070235 | 1.2:+55234305 | None:intergenic |
TTCCTCACAAACTCAGTTTC+TGG | 0.179724 | 1.2:+55230708 | None:intergenic |
TGCTTTGTTGTGTTCATTAT+TGG | 0.182697 | 1.2:-55232095 | MS.gene32052:CDS |
TCATGAAGTAAACGAGTTTC+AGG | 0.229303 | 1.2:-55235681 | MS.gene32052:intron |
CTTTCTTTAGAAACATATTA+TGG | 0.237049 | 1.2:+55235426 | None:intergenic |
GGGGCTGCTATGGCGCTTGC+GGG | 0.264211 | 1.2:-55230255 | MS.gene32052:CDS |
AAGGGCGAACAGAGACATTC+TGG | 0.294271 | 1.2:-55235406 | MS.gene32052:CDS |
CTCTGCAGCTACACTTTATC+AGG | 0.305426 | 1.2:-55236352 | MS.gene32052:intron |
TGATCAGAAGCCTTCTTTGA+TGG | 0.312569 | 1.2:+55235320 | None:intergenic |
AACCTTCTCAAGCAAATCTA+TGG | 0.313412 | 1.2:+55231074 | None:intergenic |
TGGGCAGTTCTAAGAAAGTT+TGG | 0.318432 | 1.2:-55235386 | MS.gene32052:CDS |
TCTCATACTGTGCGAAATTC+CGG | 0.330022 | 1.2:-55231666 | MS.gene32052:CDS |
GTTCTAAGAAAGTTTGGATA+TGG | 0.333427 | 1.2:-55235380 | MS.gene32052:CDS |
TTTGTCAAATAAGGATTGTT+TGG | 0.334558 | 1.2:-55231624 | MS.gene32052:CDS |
GAAGCCTTCTTTGATGGAAC+TGG | 0.337089 | 1.2:+55235326 | None:intergenic |
CCAAGAGAATTGACTCCTTC+AGG | 0.350356 | 1.2:+55235476 | None:intergenic |
ATATCCGATGCAAATCAAAT+TGG | 0.366943 | 1.2:+55232240 | None:intergenic |
GTCTCAGCTGCGTCCATATA+TGG | 0.370596 | 1.2:+55233115 | None:intergenic |
GCTTTGTTGTGTTCATTATT+GGG | 0.372616 | 1.2:-55232094 | MS.gene32052:CDS |
TGCGAATAGGAATTCTTCTT+AGG | 0.375295 | 1.2:-55230211 | None:intergenic |
CATAATATGTTTCTAAAGAA+AGG | 0.380683 | 1.2:-55235425 | MS.gene32052:CDS |
AGCAGAATCAGTGAAGGAAT+TGG | 0.384261 | 1.2:+55237189 | None:intergenic |
AGCAATGGAGGAACGGTGGC+TGG | 0.386448 | 1.2:+55237232 | None:intergenic |
GTGGAAGGATGCACCATATA+TGG | 0.388482 | 1.2:-55233128 | MS.gene32052:CDS |
CCAGCTCAGATGGATATTCA+TGG | 0.391981 | 1.2:-55231104 | MS.gene32052:intron |
GTGGGCCCTTATGACATTAC+TGG | 0.394936 | 1.2:-55232281 | MS.gene32052:CDS |
CTTTAACAGATCGGTGTGTA+AGG | 0.412658 | 1.2:-55235760 | MS.gene32052:CDS |
GACACCCTTCAGAAACTCTA+TGG | 0.421098 | 1.2:+55234534 | None:intergenic |
CCTGAAGGAGTCAATTCTCT+TGG | 0.424008 | 1.2:-55235476 | MS.gene32052:CDS |
TCCTCATTGACACTCCTTCA+AGG | 0.429605 | 1.2:-55237159 | MS.gene32052:intron |
TTGCCTCCTCATTGCTGCTA+AGG | 0.438626 | 1.2:-55231016 | MS.gene32052:CDS |
CATACCTCTCAACAGTTGTC+GGG | 0.439160 | 1.2:+55231900 | None:intergenic |
ATCAAAGAAGGCTTCTGATC+AGG | 0.440478 | 1.2:-55235318 | MS.gene32052:intron |
TGGGGCTGCTATGGCGCTTG+CGG | 0.442012 | 1.2:-55230256 | MS.gene32052:CDS |
CTCGTCGTGCACGTGCGAAT+AGG | 0.448020 | 1.2:-55230224 | MS.gene32052:CDS |
TCTGAAGGGTGTCTTTAGAT+TGG | 0.452712 | 1.2:-55234524 | MS.gene32052:CDS |
AGGTAACAACTTCTCTGAAC+TGG | 0.454077 | 1.2:+55236385 | None:intergenic |
TTGGATCCAGTAATGTCATA+AGG | 0.455858 | 1.2:+55232275 | None:intergenic |
GAAGTTAGAATCGTCATTGT+TGG | 0.456383 | 1.2:-55237310 | MS.gene32052:CDS |
GGCAGTATTAGATTCAGTTA+AGG | 0.460273 | 1.2:-55230971 | MS.gene32052:intron |
TCTGAAGGGATTTCTTTCTC+AGG | 0.460775 | 1.2:-55233071 | MS.gene32052:intron |
ACACAACAAAGCAGATTTCC+CGG | 0.461377 | 1.2:+55232105 | None:intergenic |
GCATACCTCTCAACAGTTGT+CGG | 0.461451 | 1.2:+55231899 | None:intergenic |
GCGATCTTCTGATCTTCTAC+TGG | 0.461661 | 1.2:+55232186 | None:intergenic |
TCTTCCAGTTCCATCAAAGA+AGG | 0.465826 | 1.2:-55235330 | MS.gene32052:CDS |
ATTTACAGCTGGGGCTGCTA+TGG | 0.475362 | 1.2:-55230265 | MS.gene32052:intron |
AAATTTGATACTTCATCCTC+CGG | 0.479185 | 1.2:+55231647 | None:intergenic |
TCTAATACTGCCCTTGGGAA+TGG | 0.482102 | 1.2:+55230982 | None:intergenic |
CAGAAGCCATGGCGGAAATG+AGG | 0.487224 | 1.2:+55237263 | None:intergenic |
AGAATTGAAGCGTGCTGATT+CGG | 0.488268 | 1.2:-55236868 | MS.gene32052:CDS |
ACTGAATCTAATACTGCCCT+TGG | 0.489304 | 1.2:+55230976 | None:intergenic |
AATAGCTTATCAACTTCTGC+AGG | 0.490928 | 1.2:+55234338 | None:intergenic |
TAGATTGGTAGATACGGATA+AGG | 0.493343 | 1.2:-55234509 | MS.gene32052:intron |
ATAATATGTTTCTAAAGAAA+GGG | 0.493548 | 1.2:-55235424 | MS.gene32052:CDS |
ATTTAACAGATTAGAAGCTT+CGG | 0.493849 | 1.2:-55235557 | MS.gene32052:intron |
ATCCATAGATTTGCTTGAGA+AGG | 0.499172 | 1.2:-55231076 | MS.gene32052:CDS |
AAGGCACCTGTGCTTGTGGT+TGG | 0.502067 | 1.2:-55236477 | MS.gene32052:CDS |
ACCTCAAGCTTCTGCAGTTG+AGG | 0.503695 | 1.2:+55236783 | None:intergenic |
TCTAACTTCCTTGAGAATTG+TGG | 0.510139 | 1.2:+55237324 | None:intergenic |
GTTTGTAGTGTGGGAGAACA+AGG | 0.512506 | 1.2:-55236903 | MS.gene32052:intron |
TGGATCCAGTAATGTCATAA+GGG | 0.519977 | 1.2:+55232276 | None:intergenic |
CATGGGTTATATATCTCTGA+AGG | 0.526099 | 1.2:-55233086 | MS.gene32052:CDS |
TTGATCTTCGCGATGAAAGT+AGG | 0.527652 | 1.2:-55236446 | MS.gene32052:CDS |
TGTTGTGTTCATTATTGGGA+AGG | 0.530279 | 1.2:-55232090 | MS.gene32052:intron |
TGGTAACGATTTAAAACTGC+GGG | 0.532813 | 1.2:-55235360 | MS.gene32052:CDS |
TTGGCCAATTTGATTTGCAT+CGG | 0.536674 | 1.2:-55232244 | MS.gene32052:CDS |
AGCTGCAGAGCATTCAATAC+AGG | 0.540262 | 1.2:+55236365 | None:intergenic |
GTTTCTGGAATACTCAAATG+AGG | 0.541865 | 1.2:+55230723 | None:intergenic |
CGCAGCTGAGACAACTGACA+TGG | 0.542166 | 1.2:-55233104 | MS.gene32052:CDS |
CTGAATCTAATACTGCCCTT+GGG | 0.544433 | 1.2:+55230977 | None:intergenic |
GTGTTGCGGTTATTCGCCAT+TGG | 0.544847 | 1.2:+55237346 | None:intergenic |
TTATGGATTTCAATGAAGCC+AGG | 0.545176 | 1.2:+55235443 | None:intergenic |
TGTCTTTAGATTGGTAGATA+CGG | 0.547117 | 1.2:-55234515 | MS.gene32052:CDS |
AGAAGCCATGGCGGAAATGA+GGG | 0.550930 | 1.2:+55237264 | None:intergenic |
TGTGACCAGTCAGCTCTCCT+TGG | 0.552855 | 1.2:+55231046 | None:intergenic |
AAATTGGCCAAGCTATACCT+TGG | 0.561191 | 1.2:+55232256 | None:intergenic |
AGGGCGAACAGAGACATTCT+GGG | 0.562336 | 1.2:-55235405 | MS.gene32052:CDS |
GGAGTGTCAATGAGGATGAG+AGG | 0.563202 | 1.2:+55237166 | None:intergenic |
TTATGACATTACTGGATCCA+AGG | 0.567358 | 1.2:-55232273 | MS.gene32052:CDS |
AAGCGAGTGGGACGAAGCAA+TGG | 0.567921 | 1.2:+55237217 | None:intergenic |
GCCTCAACTGCAGAAGCTTG+AGG | 0.568136 | 1.2:-55236784 | MS.gene32052:intron |
ACTGGATCCAAGGTATAGCT+TGG | 0.570727 | 1.2:-55232263 | MS.gene32052:CDS |
TTACAACCAACCACAAGCAC+AGG | 0.571926 | 1.2:+55236471 | None:intergenic |
TTCCAGAAACTGAGTTTGTG+AGG | 0.576010 | 1.2:-55230710 | MS.gene32052:CDS |
GGGGTATAGTCATTTGAGAA+AGG | 0.576441 | 1.2:+55231920 | None:intergenic |
CCTTGAGAATTGTGGTGTTG+CGG | 0.581183 | 1.2:+55237332 | None:intergenic |
AACCACCCTCATTTCCGCCA+TGG | 0.582577 | 1.2:-55237269 | MS.gene32052:CDS |
ATGATTTAACTCCATTCCCA+AGG | 0.583770 | 1.2:-55230993 | MS.gene32052:CDS |
GCAATGGAGGAACGGTGGCT+GGG | 0.584757 | 1.2:+55237233 | None:intergenic |
ATATATGGTGCATCCTTCCA+CGG | 0.585996 | 1.2:+55233130 | None:intergenic |
CTTGAGAAGGTTGTTAACCA+AGG | 0.586698 | 1.2:-55231063 | MS.gene32052:CDS |
GTTAACCAAGGAGAGCTGAC+TGG | 0.586839 | 1.2:-55231051 | MS.gene32052:CDS |
GGTGAAGGCACCTGTGCTTG+TGG | 0.595573 | 1.2:-55236481 | MS.gene32052:CDS |
TATTTGATGCTGCTCCAGAA+AGG | 0.598655 | 1.2:-55234319 | MS.gene32052:intron |
TGGGAAAGAATCAGAAGCCA+TGG | 0.598744 | 1.2:+55237252 | None:intergenic |
CGAGTGGGACGAAGCAATGG+AGG | 0.600764 | 1.2:+55237220 | None:intergenic |
TAATCGAACAAAGGATCCAC+CGG | 0.602022 | 1.2:+55235794 | None:intergenic |
AGCTTAGAGAGTCTTACCAC+GGG | 0.605360 | 1.2:-55236417 | MS.gene32052:CDS |
GAGAGGAGCAGAATCAGTGA+AGG | 0.606281 | 1.2:+55237183 | None:intergenic |
ATACAAATGCTTTAACAGAT+CGG | 0.608228 | 1.2:-55235769 | MS.gene32052:CDS |
CTGATCTTCTACTGGTGAGG+CGG | 0.609210 | 1.2:+55232194 | None:intergenic |
TGCAGCCATAGAGTTTCTGA+AGG | 0.611642 | 1.2:-55234539 | MS.gene32052:CDS |
TTAGCAGCAATGAGGAGGCA+AGG | 0.612757 | 1.2:+55231018 | None:intergenic |
ATTGTTGGTGACAAATCCGC+CGG | 0.613485 | 1.2:-55237295 | MS.gene32052:CDS |
GTGAGGCGGAGTGCTGCAGA+AGG | 0.615514 | 1.2:+55232208 | None:intergenic |
CCGCAACACCACAATTCTCA+AGG | 0.616671 | 1.2:-55237332 | MS.gene32052:CDS |
CTTCTGATCTTCTACTGGTG+AGG | 0.617826 | 1.2:+55232191 | None:intergenic |
GGGACGAAGCAATGGAGGAA+CGG | 0.619100 | 1.2:+55237225 | None:intergenic |
TTTAACAGATCGGTGTGTAA+GGG | 0.622425 | 1.2:-55235759 | MS.gene32052:CDS |
TTGAGCGTGTGAGTACTCAC+TGG | 0.626840 | 1.2:-55236809 | MS.gene32052:CDS |
GAATCAGTGAAGGAATTGGA+AGG | 0.630882 | 1.2:+55237193 | None:intergenic |
GAATTGGAAGGCAAGCGAGT+GGG | 0.632574 | 1.2:+55237205 | None:intergenic |
GTTTACTTCATGATCAGTGA+GGG | 0.634060 | 1.2:+55235691 | None:intergenic |
ATGGGTTATATATCTCTGAA+GGG | 0.637075 | 1.2:-55233085 | MS.gene32052:CDS |
CATCCTTAGCAGCAATGAGG+AGG | 0.637329 | 1.2:+55231013 | None:intergenic |
TTTCTGGAATACTCAAATGA+GGG | 0.637333 | 1.2:+55230724 | None:intergenic |
TTTGTATCATAATCGAACAA+AGG | 0.639965 | 1.2:+55235785 | None:intergenic |
GGAATTGGAAGGCAAGCGAG+TGG | 0.645051 | 1.2:+55237204 | None:intergenic |
TGATTTAACTCCATTCCCAA+GGG | 0.649017 | 1.2:-55230992 | MS.gene32052:CDS |
TAGTGTGGGAGAACAAGGCA+AGG | 0.650886 | 1.2:-55236898 | MS.gene32052:CDS |
TAGCTTAGAGAGTCTTACCA+CGG | 0.652590 | 1.2:-55236418 | MS.gene32052:CDS |
AAAAGCGGCACTTCATCCGG+TGG | 0.658887 | 1.2:-55235810 | MS.gene32052:CDS |
GTACTGCGGAATGTTCCTGA+AGG | 0.660595 | 1.2:-55235491 | MS.gene32052:CDS |
AAACATCATTGAATTAATAG+CGG | 0.663141 | 1.2:-55231873 | MS.gene32052:intron |
ATACCCCGACAACTGTTGAG+AGG | 0.663613 | 1.2:-55231904 | MS.gene32052:CDS |
CATACTGTGCGAAATTCCGG+AGG | 0.665231 | 1.2:-55231663 | MS.gene32052:CDS |
TAAAAGTGTGAAGAAGCTGC+TGG | 0.665593 | 1.2:+55230673 | None:intergenic |
AGCCATGGCGGAAATGAGGG+TGG | 0.667562 | 1.2:+55237267 | None:intergenic |
ATACCTCTCAACAGTTGTCG+GGG | 0.670103 | 1.2:+55231901 | None:intergenic |
ACGAAGCAATGGAGGAACGG+TGG | 0.670619 | 1.2:+55237228 | None:intergenic |
CGTTTACTTCATGATCAGTG+AGG | 0.676362 | 1.2:+55235690 | None:intergenic |
GTAATGATGATGGACCTTGA+AGG | 0.677023 | 1.2:+55237145 | None:intergenic |
AATCATCCTTAGCAGCAATG+AGG | 0.677246 | 1.2:+55231010 | None:intergenic |
GCAGCTGAGACAACTGACAT+GGG | 0.682979 | 1.2:-55233103 | MS.gene32052:CDS |
ATGGTAACGATTTAAAACTG+CGG | 0.688611 | 1.2:-55235361 | MS.gene32052:CDS |
GCAGCCATAGAGTTTCTGAA+GGG | 0.689488 | 1.2:-55234538 | MS.gene32052:CDS |
TTGCAGAGTGTGGAGCTGAG+TGG | 0.698077 | 1.2:-55234562 | MS.gene32052:intron |
GAAAGAATCAGAAGCCATGG+CGG | 0.711675 | 1.2:+55237255 | None:intergenic |
ACCTTGAAGGAGTGTCAATG+AGG | 0.723490 | 1.2:+55237158 | None:intergenic |
GAACTGGTTCATGATACCCG+TGG | 0.742844 | 1.2:+55236401 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 55230212 | 55237365 | 55230212 | ID=MS.gene32052 |
chr1.2 | mRNA | 55230212 | 55237365 | 55230212 | ID=MS.gene32052.t1;Parent=MS.gene32052 |
chr1.2 | exon | 55237160 | 55237365 | 55237160 | ID=MS.gene32052.t1.exon1;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55237160 | 55237365 | 55237160 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55236785 | 55236917 | 55236785 | ID=MS.gene32052.t1.exon2;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55236785 | 55236917 | 55236785 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55236353 | 55236502 | 55236353 | ID=MS.gene32052.t1.exon3;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55236353 | 55236502 | 55236353 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55235682 | 55235858 | 55235682 | ID=MS.gene32052.t1.exon4;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55235682 | 55235858 | 55235682 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55235319 | 55235570 | 55235319 | ID=MS.gene32052.t1.exon5;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55235319 | 55235570 | 55235319 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55234510 | 55234578 | 55234510 | ID=MS.gene32052.t1.exon6;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55234510 | 55234578 | 55234510 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55234320 | 55234375 | 55234320 | ID=MS.gene32052.t1.exon7;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55234320 | 55234375 | 55234320 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55233072 | 55233153 | 55233072 | ID=MS.gene32052.t1.exon8;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55233072 | 55233153 | 55233072 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55232091 | 55232302 | 55232091 | ID=MS.gene32052.t1.exon9;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55232091 | 55232302 | 55232091 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55231874 | 55231943 | 55231874 | ID=MS.gene32052.t1.exon10;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55231874 | 55231943 | 55231874 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55231590 | 55231702 | 55231590 | ID=MS.gene32052.t1.exon11;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55231590 | 55231702 | 55231590 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55230972 | 55231122 | 55230972 | ID=MS.gene32052.t1.exon12;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55230972 | 55231122 | 55230972 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55230661 | 55230844 | 55230661 | ID=MS.gene32052.t1.exon13;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55230661 | 55230844 | 55230661 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
chr1.2 | exon | 55230212 | 55230279 | 55230212 | ID=MS.gene32052.t1.exon14;Parent=MS.gene32052.t1 |
chr1.2 | CDS | 55230212 | 55230279 | 55230212 | ID=cds.MS.gene32052.t1;Parent=MS.gene32052.t1 |
Gene Sequence |
Protein sequence |