Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32118.t1 | RHN80248.1 | 98.7 | 309 | 4 | 0 | 1 | 309 | 1 | 309 | 1.90E-140 | 508.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32118.t1 | D2XNQ8 | 91.3 | 309 | 27 | 0 | 1 | 309 | 1 | 309 | 1.7e-137 | 490.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32118.t1 | A0A396JVK3 | 98.7 | 309 | 4 | 0 | 1 | 309 | 1 | 309 | 1.4e-140 | 508.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055317 | MS.gene32118 | 0.85603 | 4.24E-62 | -1.69E-46 |
| MS.gene055318 | MS.gene32118 | 0.835983 | 1.22E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32118.t1 | MTR_1g073400 | 98.058 | 309 | 6 | 0 | 1 | 309 | 1 | 309 | 0.0 | 619 |
| MS.gene32118.t1 | MTR_3g106480 | 92.880 | 309 | 22 | 0 | 1 | 309 | 1 | 309 | 0.0 | 590 |
| MS.gene32118.t1 | MTR_3g106485 | 93.204 | 309 | 21 | 0 | 1 | 309 | 1 | 309 | 0.0 | 566 |
| MS.gene32118.t1 | MTR_1g115145 | 93.871 | 310 | 15 | 2 | 1 | 309 | 1 | 307 | 0.0 | 566 |
| MS.gene32118.t1 | MTR_3g106420 | 92.233 | 309 | 24 | 0 | 1 | 309 | 3 | 311 | 0.0 | 558 |
| MS.gene32118.t1 | MTR_1g071130 | 89.320 | 309 | 7 | 1 | 1 | 309 | 1 | 283 | 0.0 | 557 |
| MS.gene32118.t1 | MTR_1g083190 | 90.291 | 309 | 30 | 0 | 1 | 309 | 3 | 311 | 0.0 | 542 |
| MS.gene32118.t1 | MTR_3g106430 | 92.880 | 309 | 22 | 0 | 1 | 309 | 1 | 309 | 0.0 | 538 |
| MS.gene32118.t1 | MTR_3g106470 | 75.405 | 309 | 20 | 2 | 1 | 309 | 32 | 284 | 2.96e-148 | 426 |
| MS.gene32118.t1 | MTR_8g063830 | 77.316 | 313 | 37 | 3 | 1 | 312 | 1 | 280 | 7.89e-143 | 410 |
| MS.gene32118.t1 | MTR_3g065540 | 66.087 | 115 | 12 | 1 | 40 | 154 | 14 | 101 | 1.37e-42 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32118.t1 | AT5G25250 | 82.848 | 309 | 53 | 0 | 1 | 309 | 1 | 309 | 0.0 | 535 |
| MS.gene32118.t1 | AT5G25260 | 81.877 | 309 | 56 | 0 | 1 | 309 | 1 | 309 | 0.0 | 528 |
| MS.gene32118.t1 | AT5G64870 | 79.545 | 308 | 63 | 0 | 2 | 309 | 3 | 310 | 2.70e-169 | 480 |
Find 79 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 1.2:+56320580 | MS.gene32118:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1.2:+56320908 | MS.gene32118:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 1.2:+56320581 | MS.gene32118:CDS |
| GTGAAGTTGGCTCGAAATCT+AGG | 0.314615 | 1.2:+56320668 | MS.gene32118:CDS |
| CTTCCCGCTGTCTTCACAAT+TGG | 0.324959 | 1.2:+56320289 | MS.gene32118:CDS |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1.2:+56320770 | MS.gene32118:CDS |
| TGTAAATCAATAACCCGAAT+TGG | 0.349196 | 1.2:-56320522 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.2:+56320543 | MS.gene32118:CDS |
| CAACTCGAACTAAACCAATT+CGG | 0.390858 | 1.2:+56320508 | MS.gene32118:CDS |
| ATCAAAATCAAACGATGTAC+AGG | 0.393868 | 1.2:+56320095 | None:intergenic |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 1.2:+56320309 | MS.gene32118:CDS |
| TCAAACTTGCAAAGAAATCA+TGG | 0.416941 | 1.2:+56320170 | MS.gene32118:CDS |
| AACTCGAACTAAACCAATTC+GGG | 0.427281 | 1.2:+56320509 | MS.gene32118:CDS |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1.2:+56320130 | MS.gene32118:CDS |
| GATGTCTTCGATTCCAGCTC+CGG | 0.437947 | 1.2:-56320149 | None:intergenic |
| AAATCAGTTTAGCGTATTTG+AGG | 0.472961 | 1.2:-56320339 | None:intergenic |
| TTTAGGGCAAAAGACGCAAA+TGG | 0.491891 | 1.2:+56320597 | MS.gene32118:CDS |
| GAAGAAAGCAGCTTGGACTA+AGG | 0.496411 | 1.2:+56320861 | MS.gene32118:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.499263 | 1.2:+56320617 | MS.gene32118:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1.2:+56320909 | MS.gene32118:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 1.2:+56320438 | MS.gene32118:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1.2:+56320120 | MS.gene32118:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1.2:+56320783 | MS.gene32118:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.517494 | 1.2:+56320655 | MS.gene32118:CDS |
| CATGTCAAGGAACTAGTTCA+AGG | 0.517510 | 1.2:+56320385 | MS.gene32118:CDS |
| GTTATTGCTATGCAGAGGGC+TGG | 0.525373 | 1.2:+56320739 | MS.gene32118:CDS |
| TACCTGGTGATAACCGGAGC+TGG | 0.525647 | 1.2:+56320136 | MS.gene32118:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1.2:+56320556 | MS.gene32118:CDS |
| TCCTCTGAAAACCTCTTCCA+TGG | 0.530446 | 1.2:-56320449 | None:intergenic |
| CGAAAGTTATTGCTATGCAG+AGG | 0.532272 | 1.2:+56320734 | MS.gene32118:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 1.2:+56320885 | MS.gene32118:CDS |
| TTCCAGCTCCGGTTATCACC+AGG | 0.538435 | 1.2:-56320138 | None:intergenic |
| TCCGGTTATCACCAGGTACT+CGG | 0.542656 | 1.2:-56320131 | None:intergenic |
| GGCTGAGGCTAATTCTGAGT+TGG | 0.544080 | 1.2:+56320834 | MS.gene32118:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 1.2:+56320213 | MS.gene32118:CDS |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1.2:+56320819 | MS.gene32118:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.561126 | 1.2:+56320873 | MS.gene32118:CDS |
| CAAACTTGCAAAGAAATCAT+GGG | 0.562132 | 1.2:+56320171 | MS.gene32118:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.2:+56320546 | MS.gene32118:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.564372 | 1.2:-56320292 | None:intergenic |
| CTCAACCTCACCTTGCAACT+CGG | 0.566348 | 1.2:-56320935 | None:intergenic |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 1.2:+56320432 | MS.gene32118:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 1.2:-56320232 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 1.2:-56320199 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 1.2:-56320225 | None:intergenic |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.575856 | 1.2:+56320938 | MS.gene32118:CDS |
| TGAAGTTGGCTCGAAATCTA+GGG | 0.579862 | 1.2:+56320669 | MS.gene32118:CDS |
| TCAGTTTAGCGTATTTGAGG+AGG | 0.587438 | 1.2:-56320336 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.2:+56320813 | MS.gene32118:CDS |
| CTAAGGGAAGCCGAGTTGCA+AGG | 0.593610 | 1.2:+56320925 | MS.gene32118:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 1.2:-56320245 | None:intergenic |
| TGGCGAAGAAGAAAGCAGCT+TGG | 0.608119 | 1.2:+56320854 | MS.gene32118:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1.2:+56320757 | MS.gene32118:CDS |
| CTAGTTCAAGGAATCATCGA+AGG | 0.612313 | 1.2:+56320397 | MS.gene32118:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.2:+56320646 | MS.gene32118:CDS |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1.2:+56320756 | MS.gene32118:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 1.2:-56320215 | None:intergenic |
| AAGACAGCGGGAAGAACGAA+AGG | 0.630029 | 1.2:-56320280 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.630802 | 1.2:+56320618 | MS.gene32118:CDS |
| TAGTTCAAGGAATCATCGAA+GGG | 0.630851 | 1.2:+56320398 | MS.gene32118:CDS |
| GAAAGTTATTGCTATGCAGA+GGG | 0.630907 | 1.2:+56320735 | MS.gene32118:CDS |
| GTTGGCTCGAAATCTAGGGA+AGG | 0.635413 | 1.2:+56320673 | MS.gene32118:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 1.2:-56320574 | None:intergenic |
| TCAAAATCAAACGATGTACA+GGG | 0.641066 | 1.2:+56320096 | None:intergenic |
| TAGTGTTGAGTATGAAACCA+AGG | 0.644971 | 1.2:+56321014 | MS.gene32118:CDS |
| GAAAGCAGCTTGGACTAAGG+CGG | 0.646507 | 1.2:+56320864 | MS.gene32118:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 1.2:+56320753 | MS.gene32118:CDS |
| GGAAGCCGAGTTGCAAGGTG+AGG | 0.648282 | 1.2:+56320930 | MS.gene32118:CDS |
| TTGGCTCGAAATCTAGGGAA+GGG | 0.650991 | 1.2:+56320674 | MS.gene32118:CDS |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 1.2:+56320372 | MS.gene32118:CDS |
| TCACTTCAGTCATTTCAGCA+AGG | 0.663673 | 1.2:+56322228 | MS.gene32118:CDS |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 1.2:+56320900 | MS.gene32118:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.680428 | 1.2:-56320364 | None:intergenic |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1.2:+56320627 | MS.gene32118:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 1.2:-56320313 | None:intergenic |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 1.2:-56320198 | None:intergenic |
| AGTTCAAGGAATCATCGAAG+GGG | 0.721843 | 1.2:+56320399 | MS.gene32118:CDS |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 1.2:-56320293 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 1.2:-56320432 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAATAAATGAAAGA+AGG | - | chr1.2:56321061-56321080 | None:intergenic | 10.0% |
| !!! | AATAATACTTTAATATCTTT+TGG | + | chr1.2:56321113-56321132 | MS.gene32118:intron | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1.2:56320581-56320600 | MS.gene32118:CDS | 15.0% |
| !!! | TTAGATTTTAAATTTTAGAG+AGG | + | chr1.2:56322027-56322046 | MS.gene32118:intron | 15.0% |
| !! | AATAAGTGTAGGAAAATAAA+GGG | - | chr1.2:56321625-56321644 | None:intergenic | 20.0% |
| !! | ATAAAGTAATGAATAAGTGT+AGG | - | chr1.2:56321636-56321655 | None:intergenic | 20.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1.2:56320580-56320599 | MS.gene32118:CDS | 20.0% |
| !!! | ACAGTTATTAGAGTAAATTT+TGG | - | chr1.2:56321329-56321348 | None:intergenic | 20.0% |
| !!! | CAGTTATTAGAGTAAATTTT+GGG | - | chr1.2:56321328-56321347 | None:intergenic | 20.0% |
| !!! | TATGGAATAGTCAAATTTTT+TGG | + | chr1.2:56321229-56321248 | MS.gene32118:intron | 20.0% |
| ! | AAATAATTAAATACCGAGCA+TGG | - | chr1.2:56321392-56321411 | None:intergenic | 25.0% |
| ! | AATAATTAAATACCGAGCAT+GGG | - | chr1.2:56321391-56321410 | None:intergenic | 25.0% |
| ! | CTTTCAAAAGATAAAGTTTC+TGG | - | chr1.2:56322192-56322211 | None:intergenic | 25.0% |
| ! | GAATAAGTGTAGGAAAATAA+AGG | - | chr1.2:56321626-56321645 | None:intergenic | 25.0% |
| ! | TGATATGTTAGTCATTTGAT+AGG | - | chr1.2:56321679-56321698 | None:intergenic | 25.0% |
| !! | CAGAAACTTTATCTTTTGAA+AGG | + | chr1.2:56322190-56322209 | MS.gene32118:intron | 25.0% |
| !! | TTAATATGTTATACGGACTA+TGG | + | chr1.2:56321211-56321230 | MS.gene32118:intron | 25.0% |
| !! | TTATATTCCACATTTTCCAA+TGG | - | chr1.2:56321817-56321836 | None:intergenic | 25.0% |
| !!! | AAATTTTTTGGCATACATGA+AGG | + | chr1.2:56321241-56321260 | MS.gene32118:intron | 25.0% |
| !!! | AGTTTTAAATAGTGCAACAT+TGG | - | chr1.2:56322002-56322021 | None:intergenic | 25.0% |
| !!! | TCACTGTAGTTAAAGTTTTT+TGG | + | chr1.2:56321147-56321166 | MS.gene32118:intron | 25.0% |
| AAATCAGTTTAGCGTATTTG+AGG | - | chr1.2:56320342-56320361 | None:intergenic | 30.0% | |
| AAGAAGGAGTTATATTTGCA+TGG | - | chr1.2:56321045-56321064 | None:intergenic | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1.2:56320171-56320190 | MS.gene32118:CDS | 30.0% | |
| CAATAACATGTGCAAATATG+AGG | - | chr1.2:56321267-56321286 | None:intergenic | 30.0% | |
| CATTCTTTAATTCTGCTATG+AGG | + | chr1.2:56321907-56321926 | MS.gene32118:intron | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | - | chr1.2:56320577-56320596 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1.2:56320170-56320189 | MS.gene32118:CDS | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1.2:56320525-56320544 | None:intergenic | 30.0% | |
| ! | ATTGCACTTCTAGTTATTGA+AGG | - | chr1.2:56322113-56322132 | None:intergenic | 30.0% |
| !! | GGATTCTTAAATTTTAACCG+AGG | - | chr1.2:56321981-56322000 | None:intergenic | 30.0% |
| !! | GTTAATTTACTTTAGAGCCT+CGG | + | chr1.2:56321961-56321980 | MS.gene32118:intron | 30.0% |
| !!! | TCTAATTTCTGCTTTTTAGC+AGG | + | chr1.2:56322299-56322318 | MS.gene32118:intron | 30.0% |
| AAAGCGTGAAGAGAAGATAA+TGG | + | chr1.2:56321495-56321514 | MS.gene32118:intron | 35.0% | |
| AACTCGAACTAAACCAATTC+GGG | + | chr1.2:56320509-56320528 | MS.gene32118:CDS | 35.0% | |
| AGAGAGGAAGAAGATAACTT+TGG | + | chr1.2:56322043-56322062 | MS.gene32118:intron | 35.0% | |
| AGCAGAATTAAAGAATGCAG+TGG | - | chr1.2:56321904-56321923 | None:intergenic | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1.2:56320508-56320527 | MS.gene32118:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1.2:56320543-56320562 | MS.gene32118:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | + | chr1.2:56320735-56320754 | MS.gene32118:CDS | 35.0% | |
| GTCACTTCCTTATGGAAAAT+CGG | - | chr1.2:56321764-56321783 | None:intergenic | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1.2:56320372-56320391 | MS.gene32118:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1.2:56320398-56320417 | MS.gene32118:CDS | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1.2:56320367-56320386 | None:intergenic | 35.0% | |
| ! | AAACACTGCTGTATGTGTTT+TGG | - | chr1.2:56321793-56321812 | None:intergenic | 35.0% |
| ! | AACACTGCTGTATGTGTTTT+GGG | - | chr1.2:56321792-56321811 | None:intergenic | 35.0% |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1.2:56320272-56320291 | None:intergenic | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | - | chr1.2:56321034-56321053 | None:intergenic | 35.0% |
| ! | GTGTTTTCCATTGGAAAATG+TGG | + | chr1.2:56321807-56321826 | MS.gene32118:intron | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | + | chr1.2:56321014-56321033 | MS.gene32118:CDS | 35.0% |
| ! | TTCAGGTGTCAAAGGATTTT+GGG | + | chr1.2:56321732-56321751 | MS.gene32118:intron | 35.0% |
| ! | TTTTCTTCTCCAGATTGCTA+TGG | + | chr1.2:56321518-56321537 | MS.gene32118:intron | 35.0% |
| ! | TTTTTAACCTTGTGCTTCCT+AGG | - | chr1.2:56321553-56321572 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1.2:56320804-56320823 | MS.gene32118:CDS | 35.0% |
| !!! | AATTTCTGCTTTTTAGCAGG+TGG | + | chr1.2:56322302-56322321 | MS.gene32118:intron | 35.0% |
| AAGTTGTGCCTCACCAATAT+TGG | + | chr1.2:56321418-56321437 | MS.gene32118:intron | 40.0% | |
| ACCTGAAGAGAGAAAGACAA+AGG | - | chr1.2:56321719-56321738 | None:intergenic | 40.0% | |
| ACTTCCTTATGGAAAATCGG+TGG | - | chr1.2:56321761-56321780 | None:intergenic | 40.0% | |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1.2:56320399-56320418 | MS.gene32118:CDS | 40.0% | |
| AGTTGTGCCTCACCAATATT+GGG | + | chr1.2:56321419-56321438 | MS.gene32118:intron | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1.2:56320385-56320404 | MS.gene32118:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | + | chr1.2:56320734-56320753 | MS.gene32118:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1.2:56320397-56320416 | MS.gene32118:CDS | 40.0% | |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1.2:56320708-56320727 | MS.gene32118:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1.2:56320655-56320674 | MS.gene32118:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1.2:56320783-56320802 | MS.gene32118:CDS | 40.0% | |
| TCACTTCAGTCATTTCAGCA+AGG | + | chr1.2:56322228-56322247 | MS.gene32118:CDS | 40.0% | |
| TCAGTTTAGCGTATTTGAGG+AGG | - | chr1.2:56320339-56320358 | None:intergenic | 40.0% | |
| TCCTTTGTCTTTCTCTCTTC+AGG | + | chr1.2:56321715-56321734 | MS.gene32118:intron | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1.2:56320546-56320565 | MS.gene32118:CDS | 40.0% | |
| TTGTGCTTCCTAGGACAAAA+GGG | - | chr1.2:56321544-56321563 | None:intergenic | 40.0% | |
| TTTCTCTCTTCAGGTGTCAA+AGG | + | chr1.2:56321724-56321743 | MS.gene32118:intron | 40.0% | |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1.2:56320181-56320200 | MS.gene32118:CDS | 40.0% |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1.2:56320770-56320789 | MS.gene32118:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr1.2:56320235-56320254 | None:intergenic | 40.0% |
| ! | CATACAGCAGTGTTTTCCAT+TGG | + | chr1.2:56321798-56321817 | MS.gene32118:intron | 40.0% |
| ! | CTTCAGGTGTCAAAGGATTT+TGG | + | chr1.2:56321731-56321750 | MS.gene32118:intron | 40.0% |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1.2:56320597-56320616 | MS.gene32118:CDS | 40.0% |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1.2:56320669-56320688 | MS.gene32118:CDS | 40.0% |
| AACGGTAGTTAACCCATGCT+CGG | + | chr1.2:56321376-56321395 | MS.gene32118:intron | 45.0% | |
| ACAAAAGGGCCATAGCAATC+TGG | - | chr1.2:56321530-56321549 | None:intergenic | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1.2:56320248-56320267 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr1.2:56320296-56320315 | None:intergenic | 45.0% | |
| ATGAAAACAACTCTCCACCC+AGG | - | chr1.2:56321459-56321478 | None:intergenic | 45.0% | |
| CTTGTGCTTCCTAGGACAAA+AGG | - | chr1.2:56321545-56321564 | None:intergenic | 45.0% | |
| GAAGAAAGCAGCTTGGACTA+AGG | + | chr1.2:56320861-56320880 | MS.gene32118:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1.2:56320813-56320832 | MS.gene32118:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1.2:56320646-56320665 | MS.gene32118:CDS | 45.0% | |
| TATCTGCTGCTCGTTGCAAA+CGG | + | chr1.2:56321358-56321377 | MS.gene32118:intron | 45.0% | |
| TGAAAACAACTCTCCACCCA+GGG | - | chr1.2:56321458-56321477 | None:intergenic | 45.0% | |
| ! | ACCATGGAAGAGGTTTTCAG+AGG | + | chr1.2:56320448-56320467 | MS.gene32118:CDS | 45.0% |
| ! | CTAGAAGTGCAATCGCTCAA+TGG | + | chr1.2:56322120-56322139 | MS.gene32118:intron | 45.0% |
| ! | GGGTCATTGTCACTTCCTTA+TGG | - | chr1.2:56321772-56321791 | None:intergenic | 45.0% |
| ! | TCCTCTGAAAACCTCTTCCA+TGG | - | chr1.2:56320452-56320471 | None:intergenic | 45.0% |
| ! | TTGGCTCGAAATCTAGGGAA+GGG | + | chr1.2:56320674-56320693 | MS.gene32118:CDS | 45.0% |
| !! | CTTTTGTCCTAGGAAGCACA+AGG | + | chr1.2:56321543-56321562 | MS.gene32118:intron | 45.0% |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1.2:56320668-56320687 | MS.gene32118:CDS | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1.2:56320909-56320928 | MS.gene32118:CDS | 45.0% |
| !! | TGCTTTTTAGCAGGTGGTGA+CGG | + | chr1.2:56322308-56322327 | MS.gene32118:intron | 45.0% |
| !!! | GTGTCCACCGATTTTCCATA+AGG | + | chr1.2:56321754-56321773 | MS.gene32118:intron | 45.0% |
| !!! | TTATTTTTTAATATGTTATA+CGG | + | chr1.2:56321204-56321223 | MS.gene32118:intron | 5.0% |
| AAGACAGCGGGAAGAACGAA+AGG | - | chr1.2:56320283-56320302 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1.2:56320202-56320221 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1.2:56320201-56320220 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr1.2:56320228-56320247 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | + | chr1.2:56320938-56320957 | MS.gene32118:CDS | 50.0% | |
| CTCAACCTCACCTTGCAACT+CGG | - | chr1.2:56320938-56320957 | None:intergenic | 50.0% | |
| CTCACCAATATTGGGAGTCC+AGG | + | chr1.2:56321427-56321446 | MS.gene32118:intron | 50.0% | |
| CTGGACTCCCAATATTGGTG+AGG | - | chr1.2:56321429-56321448 | None:intergenic | 50.0% | |
| CTTCCCGCTGTCTTCACAAT+TGG | + | chr1.2:56320289-56320308 | MS.gene32118:CDS | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1.2:56320316-56320335 | None:intergenic | 50.0% | |
| GAAAACAACTCTCCACCCAG+GGG | - | chr1.2:56321457-56321476 | None:intergenic | 50.0% | |
| GAAAGCAGCTTGGACTAAGG+CGG | + | chr1.2:56320864-56320883 | MS.gene32118:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1.2:56320627-56320646 | MS.gene32118:CDS | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1.2:56320152-56320171 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1.2:56320618-56320637 | MS.gene32118:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr1.2:56320295-56320314 | None:intergenic | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | + | chr1.2:56320834-56320853 | MS.gene32118:CDS | 50.0% | |
| GTTATTGCTATGCAGAGGGC+TGG | + | chr1.2:56320739-56320758 | MS.gene32118:CDS | 50.0% | |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1.2:56320130-56320149 | MS.gene32118:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1.2:56320134-56320153 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1.2:56320438-56320457 | MS.gene32118:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1.2:56320617-56320636 | MS.gene32118:CDS | 50.0% | |
| TGGCGAAGAAGAAAGCAGCT+TGG | + | chr1.2:56320854-56320873 | MS.gene32118:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1.2:56320556-56320575 | MS.gene32118:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1.2:56320908-56320927 | MS.gene32118:CDS | 50.0% |
| ! | TGCTATGGCCCTTTTGTCCT+AGG | + | chr1.2:56321533-56321552 | MS.gene32118:intron | 50.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1.2:56320120-56320139 | MS.gene32118:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1.2:56320263-56320282 | None:intergenic | 50.0% |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1.2:56320673-56320692 | MS.gene32118:CDS | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1.2:56320819-56320838 | MS.gene32118:CDS | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1.2:56320900-56320919 | MS.gene32118:CDS | 55.0% | |
| CGGACCTGGACTCCCAATAT+TGG | - | chr1.2:56321434-56321453 | None:intergenic | 55.0% | |
| CTAAGGGAAGCCGAGTTGCA+AGG | + | chr1.2:56320925-56320944 | MS.gene32118:CDS | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1.2:56320757-56320776 | MS.gene32118:CDS | 55.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1.2:56320136-56320155 | MS.gene32118:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1.2:56320141-56320160 | None:intergenic | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | + | chr1.2:56320873-56320892 | MS.gene32118:CDS | 55.0% | |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr1.2:56320309-56320328 | MS.gene32118:CDS | 55.0% |
| AACAACTCTCCACCCAGGGG+CGG | - | chr1.2:56321454-56321473 | None:intergenic | 60.0% | |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr1.2:56320218-56320237 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr1.2:56320213-56320232 | MS.gene32118:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | - | chr1.2:56320435-56320454 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | + | chr1.2:56320432-56320451 | MS.gene32118:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | + | chr1.2:56320753-56320772 | MS.gene32118:CDS | 60.0% | |
| GGAAGCCGAGTTGCAAGGTG+AGG | + | chr1.2:56320930-56320949 | MS.gene32118:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1.2:56320885-56320904 | MS.gene32118:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | + | chr1.2:56320756-56320775 | MS.gene32118:CDS | 60.0% | |
| AGTCCAGGTCCGCCCCTGGG+TGG | + | chr1.2:56321442-56321461 | MS.gene32118:intron | 75.0% | |
| GGGAGTCCAGGTCCGCCCCT+GGG | + | chr1.2:56321439-56321458 | MS.gene32118:intron | 75.0% | |
| TCTCCACCCAGGGGCGGACC+TGG | - | chr1.2:56321448-56321467 | None:intergenic | 75.0% | |
| TGGGAGTCCAGGTCCGCCCC+TGG | + | chr1.2:56321438-56321457 | MS.gene32118:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 56320109 | 56322365 | 56320109 | ID=MS.gene32118 |
| chr1.2 | mRNA | 56320109 | 56322365 | 56320109 | ID=MS.gene32118.t1;Parent=MS.gene32118 |
| chr1.2 | exon | 56320109 | 56321035 | 56320109 | ID=MS.gene32118.t1.exon1;Parent=MS.gene32118.t1 |
| chr1.2 | CDS | 56320109 | 56321035 | 56320109 | ID=cds.MS.gene32118.t1;Parent=MS.gene32118.t1 |
| chr1.2 | exon | 56322193 | 56322249 | 56322193 | ID=MS.gene32118.t1.exon2;Parent=MS.gene32118.t1 |
| chr1.2 | CDS | 56322193 | 56322249 | 56322193 | ID=cds.MS.gene32118.t1;Parent=MS.gene32118.t1 |
| chr1.2 | exon | 56322318 | 56322365 | 56322318 | ID=MS.gene32118.t1.exon3;Parent=MS.gene32118.t1 |
| chr1.2 | CDS | 56322318 | 56322365 | 56322318 | ID=cds.MS.gene32118.t1;Parent=MS.gene32118.t1 |
| Gene Sequence |
| Protein sequence |
