Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055318.t1 | RHN80248.1 | 97.1 | 309 | 9 | 0 | 1 | 309 | 1 | 309 | 1.40E-137 | 499.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055318.t1 | D2XNQ8 | 90.0 | 309 | 31 | 0 | 1 | 309 | 1 | 309 | 9.3e-135 | 481.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055318.t1 | A0A396JVK3 | 97.1 | 309 | 9 | 0 | 1 | 309 | 1 | 309 | 9.9e-138 | 499.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055317 | MS.gene055318 | 0.923099 | 4.15E-89 | -1.69E-46 |
| MS.gene055318 | MS.gene071642 | 0.930894 | 8.41E-94 | -1.69E-46 |
| MS.gene055318 | MS.gene32118 | 0.835983 | 1.22E-56 | -1.69E-46 |
| MS.gene055318 | MS.gene40045 | 0.816755 | 4.69E-52 | -1.69E-46 |
| MS.gene055318 | MS.gene51436 | 0.869461 | 3.04E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055318.t1 | MTR_1g073400 | 97.735 | 309 | 7 | 0 | 1 | 309 | 1 | 309 | 0.0 | 616 |
| MS.gene055318.t1 | MTR_3g106480 | 92.880 | 309 | 22 | 0 | 1 | 309 | 1 | 309 | 0.0 | 588 |
| MS.gene055318.t1 | MTR_3g106485 | 92.880 | 309 | 22 | 0 | 1 | 309 | 1 | 309 | 0.0 | 565 |
| MS.gene055318.t1 | MTR_1g115145 | 93.548 | 310 | 16 | 2 | 1 | 309 | 1 | 307 | 0.0 | 564 |
| MS.gene055318.t1 | MTR_3g106420 | 91.909 | 309 | 25 | 0 | 1 | 309 | 3 | 311 | 0.0 | 557 |
| MS.gene055318.t1 | MTR_1g071130 | 88.997 | 309 | 8 | 1 | 1 | 309 | 1 | 283 | 0.0 | 556 |
| MS.gene055318.t1 | MTR_1g083190 | 89.968 | 309 | 31 | 0 | 1 | 309 | 3 | 311 | 0.0 | 541 |
| MS.gene055318.t1 | MTR_3g106430 | 92.557 | 309 | 23 | 0 | 1 | 309 | 1 | 309 | 0.0 | 537 |
| MS.gene055318.t1 | MTR_3g106470 | 75.405 | 309 | 20 | 2 | 1 | 309 | 32 | 284 | 1.05e-148 | 425 |
| MS.gene055318.t1 | MTR_8g063830 | 78.105 | 306 | 33 | 3 | 1 | 305 | 1 | 273 | 3.38e-142 | 408 |
| MS.gene055318.t1 | MTR_3g065540 | 66.087 | 115 | 12 | 1 | 40 | 154 | 14 | 101 | 4.30e-43 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055318.t1 | AT5G25250 | 82.524 | 309 | 54 | 0 | 1 | 309 | 1 | 309 | 0.0 | 534 |
| MS.gene055318.t1 | AT5G25260 | 81.553 | 309 | 57 | 0 | 1 | 309 | 1 | 309 | 0.0 | 526 |
| MS.gene055318.t1 | AT5G64870 | 79.545 | 308 | 63 | 0 | 2 | 309 | 3 | 310 | 8.44e-170 | 480 |
Find 78 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 1.3:+52940517 | MS.gene055318:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1.3:+52940845 | MS.gene055318:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 1.3:+52940518 | MS.gene055318:CDS |
| GTGAAGTTGGCTCGAAATCT+AGG | 0.314615 | 1.3:+52940605 | MS.gene055318:CDS |
| CTTCCCGCTGTCTTCACAAT+TGG | 0.324959 | 1.3:+52940226 | MS.gene055318:CDS |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1.3:+52940707 | MS.gene055318:CDS |
| TGTAAATCAATAACCCGAAT+TGG | 0.349196 | 1.3:-52940459 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.3:+52940480 | MS.gene055318:CDS |
| CAACTCGAACTAAACCAATT+CGG | 0.390858 | 1.3:+52940445 | MS.gene055318:CDS |
| ATCAAAATCAAACGATGTAC+AGG | 0.393868 | 1.3:+52940032 | None:intergenic |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 1.3:+52940246 | MS.gene055318:CDS |
| TCAAACTTGCAAAGAAATCA+TGG | 0.416941 | 1.3:+52940107 | MS.gene055318:CDS |
| AACTCGAACTAAACCAATTC+GGG | 0.427281 | 1.3:+52940446 | MS.gene055318:CDS |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1.3:+52940067 | MS.gene055318:CDS |
| GATGTCTTCGATTCCAGCTC+CGG | 0.437947 | 1.3:-52940086 | None:intergenic |
| GAAGAAAGCGGCTTGGACTA+AGG | 0.439613 | 1.3:+52940798 | MS.gene055318:CDS |
| AAATCAGTTTAGCGTATTTG+AGG | 0.472961 | 1.3:-52940276 | None:intergenic |
| TTTAGGGCAAAAGACGCAAA+TGG | 0.491891 | 1.3:+52940534 | MS.gene055318:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.499263 | 1.3:+52940554 | MS.gene055318:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.501148 | 1.3:+52940810 | MS.gene055318:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1.3:+52940846 | MS.gene055318:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 1.3:+52940375 | MS.gene055318:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1.3:+52940057 | MS.gene055318:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1.3:+52940720 | MS.gene055318:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.517494 | 1.3:+52940592 | MS.gene055318:CDS |
| CATGTCAAGGAACTAGTTCA+AGG | 0.517510 | 1.3:+52940322 | MS.gene055318:CDS |
| GTTATTGCTATGCAGAGGGC+TGG | 0.525373 | 1.3:+52940676 | MS.gene055318:CDS |
| TACCTGGTGATAACCGGAGC+TGG | 0.525647 | 1.3:+52940073 | MS.gene055318:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1.3:+52940493 | MS.gene055318:CDS |
| TCCTCTGAAAACCTCTTCCA+TGG | 0.530446 | 1.3:-52940386 | None:intergenic |
| CGAAAGTTATTGCTATGCAG+AGG | 0.532272 | 1.3:+52940671 | MS.gene055318:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 1.3:+52940822 | MS.gene055318:CDS |
| TTCCAGCTCCGGTTATCACC+AGG | 0.538435 | 1.3:-52940075 | None:intergenic |
| TCCGGTTATCACCAGGTACT+CGG | 0.542656 | 1.3:-52940068 | None:intergenic |
| GGCTGAGGCTAATTCTGAGT+TGG | 0.544080 | 1.3:+52940771 | MS.gene055318:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 1.3:+52940150 | MS.gene055318:CDS |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1.3:+52940756 | MS.gene055318:CDS |
| CAAACTTGCAAAGAAATCAT+GGG | 0.562132 | 1.3:+52940108 | MS.gene055318:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.3:+52940483 | MS.gene055318:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.564372 | 1.3:-52940229 | None:intergenic |
| CTCAACCTCACCTTGCAACT+CGG | 0.566348 | 1.3:-52940872 | None:intergenic |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 1.3:+52940369 | MS.gene055318:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 1.3:-52940169 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 1.3:-52940136 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 1.3:-52940162 | None:intergenic |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.575856 | 1.3:+52940875 | MS.gene055318:CDS |
| TGAAGTTGGCTCGAAATCTA+GGG | 0.579862 | 1.3:+52940606 | MS.gene055318:CDS |
| TGGCGAAGAAGAAAGCGGCT+TGG | 0.584288 | 1.3:+52940791 | MS.gene055318:CDS |
| TCAGTTTAGCGTATTTGAGG+AGG | 0.587438 | 1.3:-52940273 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.3:+52940750 | MS.gene055318:CDS |
| CTAAGGGAAGCCGAGTTGCA+AGG | 0.593610 | 1.3:+52940862 | MS.gene055318:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 1.3:-52940182 | None:intergenic |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1.3:+52940694 | MS.gene055318:CDS |
| CTAGTTCAAGGAATCATCGA+AGG | 0.612313 | 1.3:+52940334 | MS.gene055318:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.3:+52940583 | MS.gene055318:CDS |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1.3:+52940693 | MS.gene055318:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 1.3:-52940152 | None:intergenic |
| AAGACAGCGGGAAGAACGAA+AGG | 0.630029 | 1.3:-52940217 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.630802 | 1.3:+52940555 | MS.gene055318:CDS |
| TAGTTCAAGGAATCATCGAA+GGG | 0.630851 | 1.3:+52940335 | MS.gene055318:CDS |
| GAAAGTTATTGCTATGCAGA+GGG | 0.630907 | 1.3:+52940672 | MS.gene055318:CDS |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 1.3:-52940511 | None:intergenic |
| TCAAAATCAAACGATGTACA+GGG | 0.641066 | 1.3:+52940033 | None:intergenic |
| TAGTGTTGAGTATGAAACCA+AGG | 0.644971 | 1.3:+52940951 | MS.gene055318:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 1.3:+52940690 | MS.gene055318:CDS |
| GGAAGCCGAGTTGCAAGGTG+AGG | 0.648282 | 1.3:+52940867 | MS.gene055318:CDS |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.653130 | 1.3:+52940786 | MS.gene055318:CDS |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 1.3:+52940309 | MS.gene055318:CDS |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 1.3:+52940837 | MS.gene055318:CDS |
| GTTGGCTCGAAATCTAGGGA+AGG | 0.671253 | 1.3:+52940610 | MS.gene055318:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.680428 | 1.3:-52940301 | None:intergenic |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1.3:+52940564 | MS.gene055318:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 1.3:-52940250 | None:intergenic |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 1.3:-52940135 | None:intergenic |
| AGTTCAAGGAATCATCGAAG+GGG | 0.721843 | 1.3:+52940336 | MS.gene055318:CDS |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 1.3:-52940230 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 1.3:-52940369 | None:intergenic |
| GAAAGCGGCTTGGACTAAGG+CGG | 0.747622 | 1.3:+52940801 | MS.gene055318:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATATTTCTCATATTTA+GGG | + | chr1.3:52940518-52940537 | MS.gene055318:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | + | chr1.3:52940517-52940536 | MS.gene055318:CDS | 20.0% |
| AAATCAGTTTAGCGTATTTG+AGG | - | chr1.3:52940279-52940298 | None:intergenic | 30.0% | |
| CAAACTTGCAAAGAAATCAT+GGG | + | chr1.3:52940108-52940127 | MS.gene055318:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | - | chr1.3:52940514-52940533 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | + | chr1.3:52940107-52940126 | MS.gene055318:CDS | 30.0% | |
| TGTAAATCAATAACCCGAAT+TGG | - | chr1.3:52940462-52940481 | None:intergenic | 30.0% | |
| AACTCGAACTAAACCAATTC+GGG | + | chr1.3:52940446-52940465 | MS.gene055318:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+CGG | + | chr1.3:52940445-52940464 | MS.gene055318:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr1.3:52940480-52940499 | MS.gene055318:CDS | 35.0% | |
| GAAAGTTATTGCTATGCAGA+GGG | + | chr1.3:52940672-52940691 | MS.gene055318:CDS | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | + | chr1.3:52940309-52940328 | MS.gene055318:CDS | 35.0% | |
| TAGTTCAAGGAATCATCGAA+GGG | + | chr1.3:52940335-52940354 | MS.gene055318:CDS | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | - | chr1.3:52940304-52940323 | None:intergenic | 35.0% | |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | - | chr1.3:52940209-52940228 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr1.3:52940741-52940760 | MS.gene055318:CDS | 35.0% |
| AGTTCAAGGAATCATCGAAG+GGG | + | chr1.3:52940336-52940355 | MS.gene055318:CDS | 40.0% | |
| CATGTCAAGGAACTAGTTCA+AGG | + | chr1.3:52940322-52940341 | MS.gene055318:CDS | 40.0% | |
| CGAAAGTTATTGCTATGCAG+AGG | + | chr1.3:52940671-52940690 | MS.gene055318:CDS | 40.0% | |
| CTAGTTCAAGGAATCATCGA+AGG | + | chr1.3:52940334-52940353 | MS.gene055318:CDS | 40.0% | |
| GAATGCAGCAAAAATTGACG+CGG | + | chr1.3:52940645-52940664 | MS.gene055318:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | + | chr1.3:52940592-52940611 | MS.gene055318:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | + | chr1.3:52940720-52940739 | MS.gene055318:CDS | 40.0% | |
| TCAGTTTAGCGTATTTGAGG+AGG | - | chr1.3:52940276-52940295 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr1.3:52940483-52940502 | MS.gene055318:CDS | 40.0% | |
| ! | AAGAAATCATGGGTTTTCCC+TGG | + | chr1.3:52940118-52940137 | MS.gene055318:CDS | 40.0% |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | + | chr1.3:52940707-52940726 | MS.gene055318:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | - | chr1.3:52940172-52940191 | None:intergenic | 40.0% |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | + | chr1.3:52940534-52940553 | MS.gene055318:CDS | 40.0% |
| !! | TGAAGTTGGCTCGAAATCTA+GGG | + | chr1.3:52940606-52940625 | MS.gene055318:CDS | 40.0% |
| ACTCATGGCTTGAACTTCGA+AGG | - | chr1.3:52940185-52940204 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr1.3:52940233-52940252 | None:intergenic | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr1.3:52940750-52940769 | MS.gene055318:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1.3:52940583-52940602 | MS.gene055318:CDS | 45.0% | |
| ! | ACCATGGAAGAGGTTTTCAG+AGG | + | chr1.3:52940385-52940404 | MS.gene055318:CDS | 45.0% |
| ! | TCCTCTGAAAACCTCTTCCA+TGG | - | chr1.3:52940389-52940408 | None:intergenic | 45.0% |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | + | chr1.3:52940786-52940805 | MS.gene055318:CDS | 45.0% |
| !! | GTGAAGTTGGCTCGAAATCT+AGG | + | chr1.3:52940605-52940624 | MS.gene055318:CDS | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | + | chr1.3:52940846-52940865 | MS.gene055318:CDS | 45.0% |
| AAGACAGCGGGAAGAACGAA+AGG | - | chr1.3:52940220-52940239 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | - | chr1.3:52940139-52940158 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | - | chr1.3:52940138-52940157 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | - | chr1.3:52940165-52940184 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | + | chr1.3:52940875-52940894 | MS.gene055318:CDS | 50.0% | |
| CTCAACCTCACCTTGCAACT+CGG | - | chr1.3:52940875-52940894 | None:intergenic | 50.0% | |
| CTTCCCGCTGTCTTCACAAT+TGG | + | chr1.3:52940226-52940245 | MS.gene055318:CDS | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr1.3:52940253-52940272 | None:intergenic | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1.3:52940564-52940583 | MS.gene055318:CDS | 50.0% | |
| GATGTCTTCGATTCCAGCTC+CGG | - | chr1.3:52940089-52940108 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1.3:52940555-52940574 | MS.gene055318:CDS | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr1.3:52940232-52940251 | None:intergenic | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | + | chr1.3:52940771-52940790 | MS.gene055318:CDS | 50.0% | |
| GTTATTGCTATGCAGAGGGC+TGG | + | chr1.3:52940676-52940695 | MS.gene055318:CDS | 50.0% | |
| TCCGAGTACCTGGTGATAAC+CGG | + | chr1.3:52940067-52940086 | MS.gene055318:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | - | chr1.3:52940071-52940090 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | + | chr1.3:52940375-52940394 | MS.gene055318:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1.3:52940554-52940573 | MS.gene055318:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1.3:52940493-52940512 | MS.gene055318:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | + | chr1.3:52940845-52940864 | MS.gene055318:CDS | 50.0% |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | + | chr1.3:52940798-52940817 | MS.gene055318:CDS | 50.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | + | chr1.3:52940057-52940076 | MS.gene055318:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | - | chr1.3:52940200-52940219 | None:intergenic | 50.0% |
| !! | GTTGGCTCGAAATCTAGGGA+AGG | + | chr1.3:52940610-52940629 | MS.gene055318:CDS | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | + | chr1.3:52940756-52940775 | MS.gene055318:CDS | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | + | chr1.3:52940837-52940856 | MS.gene055318:CDS | 55.0% | |
| CTAAGGGAAGCCGAGTTGCA+AGG | + | chr1.3:52940862-52940881 | MS.gene055318:CDS | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | + | chr1.3:52940694-52940713 | MS.gene055318:CDS | 55.0% | |
| TACCTGGTGATAACCGGAGC+TGG | + | chr1.3:52940073-52940092 | MS.gene055318:CDS | 55.0% | |
| TGGCGAAGAAGAAAGCGGCT+TGG | + | chr1.3:52940791-52940810 | MS.gene055318:CDS | 55.0% | |
| TTCCAGCTCCGGTTATCACC+AGG | - | chr1.3:52940078-52940097 | None:intergenic | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | + | chr1.3:52940810-52940829 | MS.gene055318:CDS | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | + | chr1.3:52940801-52940820 | MS.gene055318:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr1.3:52940246-52940265 | MS.gene055318:CDS | 55.0% |
| CACCGGTGAGAGGTCGAAGA+CGG | - | chr1.3:52940155-52940174 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | + | chr1.3:52940150-52940169 | MS.gene055318:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | - | chr1.3:52940372-52940391 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | + | chr1.3:52940369-52940388 | MS.gene055318:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | + | chr1.3:52940690-52940709 | MS.gene055318:CDS | 60.0% | |
| GGAAGCCGAGTTGCAAGGTG+AGG | + | chr1.3:52940867-52940886 | MS.gene055318:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | + | chr1.3:52940822-52940841 | MS.gene055318:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | + | chr1.3:52940693-52940712 | MS.gene055318:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52940046 | 52940972 | 52940046 | ID=MS.gene055318 |
| chr1.3 | mRNA | 52940046 | 52940972 | 52940046 | ID=MS.gene055318.t1;Parent=MS.gene055318 |
| chr1.3 | exon | 52940046 | 52940972 | 52940046 | ID=MS.gene055318.t1.exon1;Parent=MS.gene055318.t1 |
| chr1.3 | CDS | 52940046 | 52940972 | 52940046 | ID=cds.MS.gene055318.t1;Parent=MS.gene055318.t1 |
| Gene Sequence |
| Protein sequence |
