Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32423.t1 | XP_013466252.1 | 97.2 | 677 | 16 | 2 | 1 | 677 | 1 | 674 | 0.00E+00 | 1242.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32423.t1 | Q8L860 | 53.7 | 700 | 276 | 17 | 1 | 677 | 1 | 675 | 1.5e-166 | 587.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32423.t1 | A0A072VFS3 | 97.2 | 677 | 16 | 2 | 1 | 677 | 1 | 674 | 0.0e+00 | 1242.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052281 | MS.gene32423 | 0.800118 | 1.67E-48 | -1.69E-46 |
| MS.gene059896 | MS.gene32423 | 0.843504 | 1.35E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32423.t1 | MTR_1g026840 | 98.523 | 677 | 7 | 2 | 1 | 677 | 1 | 674 | 0.0 | 1362 |
| MS.gene32423.t1 | MTR_3g110108 | 70.349 | 688 | 166 | 9 | 1 | 672 | 1 | 666 | 0.0 | 923 |
| MS.gene32423.t1 | MTR_3g110108 | 71.941 | 474 | 105 | 5 | 1 | 461 | 1 | 459 | 0.0 | 694 |
| MS.gene32423.t1 | MTR_3g088805 | 50.959 | 365 | 157 | 6 | 4 | 362 | 7 | 355 | 5.76e-107 | 334 |
| MS.gene32423.t1 | MTR_7g072310 | 46.026 | 302 | 135 | 3 | 7 | 286 | 15 | 310 | 5.89e-89 | 293 |
| MS.gene32423.t1 | MTR_3g097280 | 41.696 | 283 | 149 | 5 | 1 | 277 | 1 | 273 | 8.37e-61 | 211 |
| MS.gene32423.t1 | MTR_8g095280 | 39.223 | 283 | 162 | 4 | 1 | 279 | 1 | 277 | 3.25e-58 | 202 |
| MS.gene32423.t1 | MTR_7g072310 | 40.574 | 244 | 117 | 3 | 65 | 286 | 1 | 238 | 1.86e-57 | 206 |
| MS.gene32423.t1 | MTR_8g095280 | 39.357 | 249 | 141 | 4 | 35 | 279 | 4 | 246 | 8.14e-50 | 178 |
| MS.gene32423.t1 | MTR_5g007480 | 31.985 | 272 | 168 | 9 | 2 | 266 | 48 | 309 | 1.39e-33 | 133 |
| MS.gene32423.t1 | MTR_4g077940 | 33.574 | 277 | 164 | 11 | 5 | 266 | 51 | 322 | 5.86e-23 | 102 |
| MS.gene32423.t1 | MTR_4g077940 | 33.333 | 276 | 166 | 10 | 5 | 266 | 78 | 349 | 5.88e-23 | 102 |
| MS.gene32423.t1 | MTR_7g097010 | 28.028 | 289 | 172 | 10 | 5 | 271 | 41 | 315 | 2.55e-20 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32423.t1 | AT4G32760 | 57.243 | 711 | 234 | 21 | 1 | 677 | 1 | 675 | 0.0 | 689 |
| MS.gene32423.t1 | AT4G32760 | 56.901 | 710 | 239 | 19 | 1 | 677 | 1 | 676 | 0.0 | 686 |
| MS.gene32423.t1 | AT4G32760 | 65.409 | 477 | 138 | 10 | 1 | 474 | 1 | 453 | 0.0 | 592 |
| MS.gene32423.t1 | AT3G08790 | 48.159 | 706 | 238 | 28 | 1 | 677 | 1 | 607 | 1.38e-179 | 524 |
| MS.gene32423.t1 | AT1G21380 | 59.259 | 270 | 105 | 3 | 4 | 272 | 7 | 272 | 1.62e-105 | 330 |
| MS.gene32423.t1 | AT1G76970 | 57.534 | 292 | 107 | 5 | 4 | 293 | 7 | 283 | 2.20e-104 | 325 |
| MS.gene32423.t1 | AT1G76970 | 57.534 | 292 | 107 | 5 | 4 | 293 | 7 | 283 | 2.20e-104 | 325 |
| MS.gene32423.t1 | AT1G76970 | 57.534 | 292 | 107 | 5 | 4 | 293 | 7 | 283 | 2.20e-104 | 325 |
| MS.gene32423.t1 | AT1G76970 | 57.534 | 292 | 107 | 5 | 4 | 293 | 7 | 283 | 2.20e-104 | 325 |
| MS.gene32423.t1 | AT1G76970 | 56.322 | 261 | 97 | 5 | 35 | 293 | 12 | 257 | 1.06e-84 | 273 |
| MS.gene32423.t1 | AT1G76970 | 56.322 | 261 | 97 | 5 | 35 | 293 | 12 | 257 | 1.06e-84 | 273 |
| MS.gene32423.t1 | AT2G38410 | 44.839 | 310 | 122 | 3 | 7 | 270 | 13 | 319 | 5.36e-77 | 260 |
| MS.gene32423.t1 | AT5G01760 | 45.455 | 275 | 141 | 4 | 2 | 271 | 22 | 292 | 1.41e-75 | 253 |
| MS.gene32423.t1 | AT5G63640 | 43.223 | 273 | 151 | 3 | 1 | 272 | 1 | 270 | 2.65e-65 | 223 |
| MS.gene32423.t1 | AT5G63640 | 43.223 | 273 | 151 | 3 | 1 | 272 | 1 | 270 | 2.65e-65 | 223 |
| MS.gene32423.t1 | AT1G76970 | 56.667 | 210 | 74 | 5 | 86 | 293 | 1 | 195 | 3.92e-64 | 216 |
| MS.gene32423.t1 | AT5G16880 | 33.577 | 274 | 163 | 11 | 3 | 266 | 49 | 313 | 1.11e-33 | 134 |
| MS.gene32423.t1 | AT5G16880 | 33.577 | 274 | 163 | 11 | 3 | 266 | 49 | 313 | 1.11e-33 | 134 |
| MS.gene32423.t1 | AT5G16880 | 33.577 | 274 | 163 | 11 | 3 | 266 | 49 | 313 | 1.11e-33 | 134 |
| MS.gene32423.t1 | AT5G16880 | 34.524 | 252 | 150 | 10 | 3 | 247 | 49 | 292 | 3.32e-31 | 124 |
| MS.gene32423.t1 | AT1G06210 | 28.674 | 279 | 173 | 10 | 1 | 263 | 37 | 305 | 1.43e-21 | 97.8 |
| MS.gene32423.t1 | AT1G06210 | 27.907 | 215 | 134 | 7 | 5 | 205 | 41 | 248 | 4.68e-13 | 70.5 |
Find 213 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGCTGTTGTTGATATT+GGG | 0.223296 | 1.4:+12678266 | None:intergenic |
| CAACTTACTTCTTTGTTGTT+AGG | 0.228067 | 1.4:+12682019 | None:intergenic |
| TCAGGAACTTCTACTCAAAA+TGG | 0.249040 | 1.4:-12679464 | MS.gene32423:CDS |
| GCATTAACTGATTCAATGTT+TGG | 0.270331 | 1.4:+12678562 | None:intergenic |
| CGTAGCCATAACCTGCAAAT+TGG | 0.286960 | 1.4:+12677471 | None:intergenic |
| TCTGCTGCTGTTGTTGATAT+TGG | 0.288831 | 1.4:+12678265 | None:intergenic |
| ACAGAATGCACATGGTATTA+TGG | 0.289964 | 1.4:-12682074 | MS.gene32423:CDS |
| TGTTGATATTGGGGAGTAAA+TGG | 0.299192 | 1.4:+12678276 | None:intergenic |
| GATACTTGGCAAGAAGCTTT+TGG | 0.303182 | 1.4:-12683231 | MS.gene32423:CDS |
| CCCAATGTTGGTGGCCAATC+TGG | 0.309604 | 1.4:-12678300 | MS.gene32423:CDS |
| ACAGGAGGTTATTGTTGATT+TGG | 0.312747 | 1.4:-12680378 | MS.gene32423:CDS |
| TCCTCTTCTGGTGCTGAAGC+AGG | 0.313482 | 1.4:-12678588 | MS.gene32423:CDS |
| AAGCCAGAGGATAAGTTATT+CGG | 0.322015 | 1.4:-12677314 | MS.gene32423:CDS |
| GGAAACCAATTTGCAGGTTA+TGG | 0.323327 | 1.4:-12677476 | MS.gene32423:CDS |
| GATGCTCCTTTGGTTGATAC+TGG | 0.332313 | 1.4:-12679389 | MS.gene32423:CDS |
| AGGGCATTCTGATCATTTAC+AGG | 0.335396 | 1.4:+12678393 | None:intergenic |
| GTCCCACTTGGGATCAGCTT+TGG | 0.346784 | 1.4:+12678500 | None:intergenic |
| AACTTACTTCTTTGTTGTTA+GGG | 0.355207 | 1.4:+12682020 | None:intergenic |
| GGTGAAAATAGTAAAGAAAA+AGG | 0.355667 | 1.4:-12683389 | MS.gene32423:intron |
| GCGAAACTCCAGTTCCAATC+AGG | 0.356777 | 1.4:-12677372 | MS.gene32423:CDS |
| TTCTCTTTGACATGAAAATC+AGG | 0.358337 | 1.4:+12683270 | None:intergenic |
| GCAAGTGAAGTATCTGCTTT+TGG | 0.360775 | 1.4:+12678450 | None:intergenic |
| ATGAAGAAATATTACCATAA+GGG | 0.367323 | 1.4:+12678103 | None:intergenic |
| CAACAACCAGCTTCCCCTTA+TGG | 0.367428 | 1.4:-12678117 | MS.gene32423:intron |
| TGTAGATATTGATGCTCCTT+TGG | 0.367957 | 1.4:-12679399 | MS.gene32423:CDS |
| GCCACCAACATTGGGTTGTT+GGG | 0.373847 | 1.4:+12678308 | None:intergenic |
| TATATGTGCAGGTCCTCTTC+TGG | 0.376172 | 1.4:-12678600 | MS.gene32423:intron |
| GCAGAGGCCTCAGCTGCGTC+TGG | 0.387629 | 1.4:+12682838 | None:intergenic |
| CAGCATATGCAAGGTGTTGC+AGG | 0.388101 | 1.4:-12677572 | MS.gene32423:CDS |
| ATGTATGGAAACCAATTTGC+AGG | 0.388230 | 1.4:-12677482 | MS.gene32423:CDS |
| AGCCAGAGGATAAGTTATTC+GGG | 0.389324 | 1.4:-12677313 | MS.gene32423:CDS |
| GCATTTGGCACATTTCCATT+GGG | 0.395588 | 1.4:+12678216 | None:intergenic |
| CATTAACTGATTCAATGTTT+GGG | 0.397291 | 1.4:+12678563 | None:intergenic |
| CCAGGTTGGAAGCAATCAAT+TGG | 0.397618 | 1.4:-12677606 | MS.gene32423:CDS |
| GGCCACCAACATTGGGTTGT+TGG | 0.401898 | 1.4:+12678307 | None:intergenic |
| TACATTTGCTGCTCAATGTA+TGG | 0.403276 | 1.4:+12677425 | None:intergenic |
| GATCATTGCCGCCACCTCCC+TGG | 0.405167 | 1.4:-12677826 | MS.gene32423:CDS |
| ACAGAGTTCCGCAAATCATC+AGG | 0.405602 | 1.4:-12677711 | MS.gene32423:CDS |
| CTACGGTCAACAACAACAAC+AGG | 0.411293 | 1.4:-12677453 | MS.gene32423:CDS |
| TACTGCTTCTTGTAGATACT+TGG | 0.411730 | 1.4:-12683245 | MS.gene32423:CDS |
| GTCGGACGGTTGAGCTTCCC+AGG | 0.416365 | 1.4:+12677808 | None:intergenic |
| GGGCCTCAAGCAATGGGTTA+TGG | 0.416438 | 1.4:-12677689 | MS.gene32423:CDS |
| TTTGCTTATTTCAGCGTGCC+GGG | 0.417359 | 1.4:-12682966 | MS.gene32423:intron |
| CTCGATGTTCATGGCCCAAT+CGG | 0.418868 | 1.4:+12686619 | None:intergenic |
| TGCATTTGGCACATTTCCAT+TGG | 0.424517 | 1.4:+12678215 | None:intergenic |
| GAAGTCAATGGTTGTGTTTG+TGG | 0.430137 | 1.4:+12682895 | None:intergenic |
| TCACTTGCTCTTGTTCCTCT+AGG | 0.432550 | 1.4:-12678435 | MS.gene32423:CDS |
| TTGATAGGTGCGCAAAATAG+TGG | 0.434876 | 1.4:-12677848 | MS.gene32423:intron |
| GACATATGGCCGTTAGCATT+TGG | 0.438245 | 1.4:+12677641 | None:intergenic |
| GGATGAATCACTGCTATGCC+AGG | 0.440080 | 1.4:-12679543 | MS.gene32423:CDS |
| CCAACATTGGGTTGTTGGGT+TGG | 0.440486 | 1.4:+12678312 | None:intergenic |
| CGTATAACCCTGATTGGAAC+TGG | 0.441053 | 1.4:+12677364 | None:intergenic |
| TCTGTTTCAGGGGCTTAGAC+AGG | 0.441192 | 1.4:-12680396 | MS.gene32423:intron |
| ATCGGAGATGGTGAATTCTA+TGG | 0.441462 | 1.4:-12686675 | None:intergenic |
| GCATCCGCGTCACGTATGTT+TGG | 0.446206 | 1.4:+12682865 | None:intergenic |
| GTCGCAGATCTCGATGTTCA+TGG | 0.447546 | 1.4:+12686610 | None:intergenic |
| TGCAGGTCATTACATGGGTA+TGG | 0.449608 | 1.4:-12677555 | MS.gene32423:CDS |
| TATACGTCTTATGTTCCATC+GGG | 0.450942 | 1.4:-12677347 | MS.gene32423:CDS |
| TTGTTGGGTTGGCTGAGTAT+TGG | 0.455421 | 1.4:+12678323 | None:intergenic |
| TATGCTCATCGGTCCCGATT+GGG | 0.455894 | 1.4:-12686633 | MS.gene32423:CDS |
| ATCATTGCCGCCACCTCCCT+GGG | 0.456238 | 1.4:-12677825 | MS.gene32423:CDS |
| GACATGCTCAATCATGATCC+TGG | 0.459413 | 1.4:-12686590 | MS.gene32423:CDS |
| TACATTGAGCAGCAAATGTA+TGG | 0.459475 | 1.4:-12677422 | MS.gene32423:CDS |
| TACCGAGGTAAACCTGCATT+TGG | 0.461477 | 1.4:+12678201 | None:intergenic |
| AACTTATCCTCTGGCTTGGA+AGG | 0.462554 | 1.4:+12677320 | None:intergenic |
| GGAGGTTATTGTTGATTTGG+TGG | 0.464547 | 1.4:-12680375 | MS.gene32423:CDS |
| ATAAGACGTATAACCCTGAT+TGG | 0.464637 | 1.4:+12677358 | None:intergenic |
| CTTACGTAGTTGAGTTTACA+AGG | 0.465510 | 1.4:+12680318 | None:intergenic |
| CCAGATTGGCCACCAACATT+GGG | 0.465571 | 1.4:+12678300 | None:intergenic |
| GGCAGGTACCGCTGAACCAT+TGG | 0.468535 | 1.4:+12678521 | None:intergenic |
| GACAATGGCAGTCCGGTAGC+AGG | 0.472779 | 1.4:-12677788 | MS.gene32423:CDS |
| TTGGTTGATACTGGAGATAC+TGG | 0.474645 | 1.4:-12679380 | MS.gene32423:CDS |
| CACTTGGGATCAGCTTTGGC+AGG | 0.476176 | 1.4:+12678504 | None:intergenic |
| ACCAGATTGGCCACCAACAT+TGG | 0.476822 | 1.4:+12678299 | None:intergenic |
| ATCTGCAGCGTCTACTTGCC+AGG | 0.479242 | 1.4:-12679502 | MS.gene32423:CDS |
| CCAATTGATTGCTTCCAACC+TGG | 0.480702 | 1.4:+12677606 | None:intergenic |
| ATGTATCCACAACAGATGTA+TGG | 0.480885 | 1.4:-12677497 | MS.gene32423:CDS |
| GGTTATTGACTGCTGACATA+TGG | 0.481015 | 1.4:+12677627 | None:intergenic |
| TAAACATTACCAGCAGTTCC+TGG | 0.483312 | 1.4:+12683169 | None:intergenic |
| ACCACTGAGCAGGTCCCACT+TGG | 0.485032 | 1.4:+12678488 | None:intergenic |
| TGCTACCGGACTGCCATTGT+CGG | 0.487925 | 1.4:+12677790 | None:intergenic |
| GGTTGAGCTTCCCAGGGAGG+TGG | 0.490655 | 1.4:+12677815 | None:intergenic |
| AGCTCCTGCATGGAATGGTC+AGG | 0.492373 | 1.4:-12678151 | MS.gene32423:CDS |
| TTGAGGCCCCTGATGATTTG+CGG | 0.494420 | 1.4:+12677703 | None:intergenic |
| ATTTGCTTATTTCAGCGTGC+CGG | 0.497309 | 1.4:-12682967 | MS.gene32423:intron |
| TGAGCTTCCCAGGGAGGTGG+CGG | 0.498999 | 1.4:+12677818 | None:intergenic |
| TCCCCGAATAACTTATCCTC+TGG | 0.499326 | 1.4:+12677311 | None:intergenic |
| TCAAAATGGAAATCAGATAG+AGG | 0.499420 | 1.4:-12679450 | MS.gene32423:CDS |
| TGCTGCATACCAGGAACTGC+TGG | 0.500884 | 1.4:-12683178 | MS.gene32423:intron |
| TGGTTTCCATACATCTGTTG+TGG | 0.501498 | 1.4:+12677491 | None:intergenic |
| AAAGGTATCAAGAAGCGGAT+TGG | 0.503120 | 1.4:-12685492 | MS.gene32423:CDS |
| TGATCATTTACAGGAGTGGC+AGG | 0.505960 | 1.4:+12678402 | None:intergenic |
| ACAAGTTGCCGAGCAGATGC+AGG | 0.506068 | 1.4:+12679419 | None:intergenic |
| GCAATGGGTTATGGCCAGGC+TGG | 0.509475 | 1.4:-12677680 | MS.gene32423:CDS |
| CGAAACTCCAGTTCCAATCA+GGG | 0.509903 | 1.4:-12677371 | MS.gene32423:CDS |
| AATGGAAATGTGCCAAATGC+AGG | 0.510995 | 1.4:-12678213 | MS.gene32423:CDS |
| CCTCTTCTGGTGCTGAAGCA+GGG | 0.511267 | 1.4:-12678587 | MS.gene32423:CDS |
| TCAAGCAATGGGTTATGGCC+AGG | 0.512254 | 1.4:-12677684 | MS.gene32423:CDS |
| AGGTGTTGCAGGTCATTACA+TGG | 0.512490 | 1.4:-12677561 | MS.gene32423:CDS |
| TCATCAGGGGCCTCAAGCAA+TGG | 0.513105 | 1.4:-12677696 | MS.gene32423:CDS |
| CATCAGGGGCCTCAAGCAAT+GGG | 0.515377 | 1.4:-12677695 | MS.gene32423:CDS |
| TGTGGATACTGAGGTGGTAG+TGG | 0.515502 | 1.4:+12677755 | None:intergenic |
| ACATACGTGACGCGGATGCT+CGG | 0.517270 | 1.4:-12682861 | MS.gene32423:CDS |
| TGACTGAATTGAGGTGGTTG+TGG | 0.519401 | 1.4:+12677737 | None:intergenic |
| CCTGCGCCAGCTACTTCCAA+TGG | 0.520406 | 1.4:-12678537 | MS.gene32423:CDS |
| ACCGTCCGACAATGGCAGTC+CGG | 0.520704 | 1.4:-12677795 | MS.gene32423:CDS |
| TGCTGCTGTTGTTGATATTG+GGG | 0.526913 | 1.4:+12678267 | None:intergenic |
| TTACAAACATACCTTAGCGT+TGG | 0.528507 | 1.4:+12682802 | None:intergenic |
| TCGATGTTCATGGCCCAATC+GGG | 0.528578 | 1.4:+12686620 | None:intergenic |
| TGCTCGGCCAGACGCAGCTG+AGG | 0.528960 | 1.4:-12682845 | MS.gene32423:CDS |
| GAATAACTTATCCTCTGGCT+TGG | 0.531180 | 1.4:+12677316 | None:intergenic |
| GTTTGTGGAGGAGTGAATAC+AGG | 0.534401 | 1.4:+12682910 | None:intergenic |
| CAATTTGCAGGTTATGGCTA+CGG | 0.534873 | 1.4:-12677470 | MS.gene32423:CDS |
| ATATTACCATAAGGGGAAGC+TGG | 0.535454 | 1.4:+12678111 | None:intergenic |
| ATATGCTCATCGGTCCCGAT+TGG | 0.536409 | 1.4:-12686634 | MS.gene32423:CDS |
| TGAAGAAATATTACCATAAG+GGG | 0.538079 | 1.4:+12678104 | None:intergenic |
| ACAATACTATGCTGCATACC+AGG | 0.542835 | 1.4:-12683187 | MS.gene32423:CDS |
| CATAGTTATCACCACTGAGC+AGG | 0.544400 | 1.4:+12678478 | None:intergenic |
| CATCATTGAGAGCTAGTCCC+TGG | 0.544403 | 1.4:+12679525 | None:intergenic |
| GGCTTGGAAGGCTTCCCCGA+TGG | 0.547370 | 1.4:+12677332 | None:intergenic |
| ACCCAACAACCCAATGTTGG+TGG | 0.548389 | 1.4:-12678309 | MS.gene32423:CDS |
| GCTGAACCATTGGAAGTAGC+TGG | 0.548714 | 1.4:+12678531 | None:intergenic |
| TGGTATTATGGATGTTCTTG+CGG | 0.553127 | 1.4:-12682062 | MS.gene32423:CDS |
| TTATACGTCTTATGTTCCAT+CGG | 0.555460 | 1.4:-12677348 | MS.gene32423:CDS |
| CAGGTTGGAAGCAATCAATT+GGG | 0.555583 | 1.4:-12677605 | MS.gene32423:CDS |
| TAAGTTATTCGGGGATCTTG+TGG | 0.557924 | 1.4:-12677303 | MS.gene32423:CDS |
| TGCAGTGATTGCTCATACCG+AGG | 0.559270 | 1.4:+12678186 | None:intergenic |
| TTTGGAGGGTATGAAGTCAA+TGG | 0.561502 | 1.4:+12682883 | None:intergenic |
| CCCTGCTTCAGCACCAGAAG+AGG | 0.561683 | 1.4:+12678587 | None:intergenic |
| TACATGCTACCAGCTCGACC+TGG | 0.562479 | 1.4:+12677251 | None:intergenic |
| AAAACAACTCCAGGTCGAGC+TGG | 0.563885 | 1.4:-12677260 | MS.gene32423:CDS |
| GGATACTGACCACCTGCTAC+CGG | 0.564121 | 1.4:+12677776 | None:intergenic |
| GGGGAGTAAATGGACCAGAT+TGG | 0.566794 | 1.4:+12678286 | None:intergenic |
| TCCGCGTCACGTATGTTTGG+AGG | 0.570227 | 1.4:+12682868 | None:intergenic |
| GTGAAGCCGAAAACAACTCC+AGG | 0.572576 | 1.4:-12677269 | MS.gene32423:CDS |
| ACCGGACTGCCATTGTCGGA+CGG | 0.572853 | 1.4:+12677794 | None:intergenic |
| GTTTCAGGGGCTTAGACAGG+AGG | 0.574938 | 1.4:-12680393 | MS.gene32423:intron |
| AATCTGAATTTCCAACGCTA+AGG | 0.577254 | 1.4:-12682813 | MS.gene32423:intron |
| ATTCGGGGATCTTGTGGACA+TGG | 0.579335 | 1.4:-12677297 | MS.gene32423:CDS |
| CAGATTGTTCAGATCTCTGA+GGG | 0.581230 | 1.4:+12682935 | None:intergenic |
| TATTGTGGATATCTTGCCCT+CGG | 0.582804 | 1.4:+12683204 | None:intergenic |
| TGACAAAATAGATTCATGCC+TGG | 0.586132 | 1.4:+12679484 | None:intergenic |
| CAGCAGACATTCACATCTCA+AGG | 0.586696 | 1.4:-12678249 | MS.gene32423:CDS |
| TATGGTTATTAGGCAAGCAA+AGG | 0.589486 | 1.4:-12685523 | MS.gene32423:intron |
| GATACTGGCAAACAAACTGA+TGG | 0.591438 | 1.4:-12679365 | MS.gene32423:CDS |
| AGTACAGCTCCTGCATGGAA+TGG | 0.592193 | 1.4:-12678156 | MS.gene32423:CDS |
| ACATGCTCAATCATGATCCT+GGG | 0.594604 | 1.4:-12686589 | MS.gene32423:intron |
| CACAAAGTACAGCTCCTGCA+TGG | 0.595385 | 1.4:-12678161 | MS.gene32423:CDS |
| CATTTGGCACATTTCCATTG+GGG | 0.595503 | 1.4:+12678217 | None:intergenic |
| CAGAGTTCCGCAAATCATCA+GGG | 0.596713 | 1.4:-12677710 | MS.gene32423:CDS |
| ATGGGTTATGGCCAGGCTGG+TGG | 0.596992 | 1.4:-12677677 | MS.gene32423:CDS |
| TGGCCATAACCCATTGCTTG+AGG | 0.597077 | 1.4:+12677686 | None:intergenic |
| GCAACCTGACCATTCCATGC+AGG | 0.597585 | 1.4:+12678147 | None:intergenic |
| CTCTGTACATGACTGAATTG+AGG | 0.598943 | 1.4:+12677728 | None:intergenic |
| TCTCTGAGGGAATACTGCCC+CGG | 0.599149 | 1.4:+12682948 | None:intergenic |
| ACCGATGAGCATATCGCTCG+TGG | 0.599653 | 1.4:+12686643 | None:intergenic |
| CAAGCAAAGGATGTTGTCAA+AGG | 0.602108 | 1.4:-12685510 | MS.gene32423:CDS |
| CCAACCCAACAACCCAATGT+TGG | 0.603250 | 1.4:-12678312 | MS.gene32423:CDS |
| TCAGCAGTCAATAACCAGGT+TGG | 0.603323 | 1.4:-12677620 | MS.gene32423:CDS |
| CCCTCCAAACATACGTGACG+CGG | 0.605840 | 1.4:-12682869 | MS.gene32423:CDS |
| TGGTATGCAGCATAGTATTG+TGG | 0.606322 | 1.4:+12683189 | None:intergenic |
| ATTCTGATCATTTACAGGAG+TGG | 0.607584 | 1.4:+12678398 | None:intergenic |
| TGTGGATACATAGAAGCCGC+AGG | 0.607780 | 1.4:+12677509 | None:intergenic |
| CCGCGTCACGTATGTTTGGA+GGG | 0.608608 | 1.4:+12682869 | None:intergenic |
| CCATTGGAAGTAGCTGGCGC+AGG | 0.610262 | 1.4:+12678537 | None:intergenic |
| TGCCAAATGCAGGTTTACCT+CGG | 0.613570 | 1.4:-12678203 | MS.gene32423:CDS |
| CAACACCTTGCATATGCTGA+GGG | 0.616302 | 1.4:+12677576 | None:intergenic |
| TGAGGTGGTTGTGGATACTG+AGG | 0.619141 | 1.4:+12677746 | None:intergenic |
| CTTCACTTACAGTTAGTGCA+AGG | 0.620099 | 1.4:+12685445 | None:intergenic |
| GTCAATGGTTGTGTTTGTGG+AGG | 0.621322 | 1.4:+12682898 | None:intergenic |
| AGCTACTTCCAATGGTTCAG+CGG | 0.624271 | 1.4:-12678529 | MS.gene32423:CDS |
| GCATATACATACCACCAGCC+TGG | 0.624660 | 1.4:+12677666 | None:intergenic |
| TTGTCAAAGGTATCAAGAAG+CGG | 0.627413 | 1.4:-12685497 | MS.gene32423:CDS |
| TATATGCAGCCAAATGCTAA+CGG | 0.627905 | 1.4:-12677650 | MS.gene32423:CDS |
| GAGAGACGTGCTTCATGAGA+TGG | 0.631484 | 1.4:-12683410 | MS.gene32423:CDS |
| GAAGCTCAACCGTCCGACAA+TGG | 0.631535 | 1.4:-12677803 | MS.gene32423:CDS |
| ATGCACCCTCAGCATATGCA+AGG | 0.632651 | 1.4:-12677581 | MS.gene32423:CDS |
| ATACTGGCAAACAAACTGAT+GGG | 0.633087 | 1.4:-12679364 | MS.gene32423:CDS |
| GACGGTTGAGCTTCCCAGGG+AGG | 0.633857 | 1.4:+12677812 | None:intergenic |
| TTGCTTATTTCAGCGTGCCG+GGG | 0.634786 | 1.4:-12682965 | MS.gene32423:intron |
| TCGGACGGTTGAGCTTCCCA+GGG | 0.639053 | 1.4:+12677809 | None:intergenic |
| ATTCAAAGCCTGCATCTGCT+CGG | 0.639862 | 1.4:-12679427 | MS.gene32423:CDS |
| TGGAAATTCAGATTCTGCAG+AGG | 0.640110 | 1.4:+12682822 | None:intergenic |
| TCATTTACAGGAGTGGCAGG+TGG | 0.640914 | 1.4:+12678405 | None:intergenic |
| GGTGGTTGTGGATACTGAGG+TGG | 0.641647 | 1.4:+12677749 | None:intergenic |
| GATGAATCACTGCTATGCCA+GGG | 0.646115 | 1.4:-12679542 | MS.gene32423:CDS |
| GCCACGAGCGATATGCTCAT+CGG | 0.646284 | 1.4:-12686644 | MS.gene32423:CDS |
| GAAACAATTATAAAGAACTG+TGG | 0.650766 | 1.4:-12683460 | MS.gene32423:CDS |
| CTGCCAAAGCTGATCCCAAG+TGG | 0.653739 | 1.4:-12678503 | MS.gene32423:CDS |
| CCACTGAGCAGGTCCCACTT+GGG | 0.655885 | 1.4:+12678489 | None:intergenic |
| AATGGCAGTCCGGTAGCAGG+TGG | 0.657738 | 1.4:-12677785 | MS.gene32423:CDS |
| GCAACACCTTGCATATGCTG+AGG | 0.658508 | 1.4:+12677575 | None:intergenic |
| TATGTCAGCAGTCAATAACC+AGG | 0.660036 | 1.4:-12677624 | MS.gene32423:CDS |
| GTATCTCCAGTATCAACCAA+AGG | 0.662112 | 1.4:+12679383 | None:intergenic |
| TCAAGCACAAGGTGGTCCTG+CGG | 0.662796 | 1.4:-12677525 | MS.gene32423:CDS |
| TGCCAAAGCTGATCCCAAGT+GGG | 0.663726 | 1.4:-12678502 | MS.gene32423:CDS |
| GCAGGTGGTTGTTCTCCTAG+AGG | 0.668111 | 1.4:+12678420 | None:intergenic |
| GGGGAAGCCTTCCAAGCCAG+AGG | 0.670946 | 1.4:-12677327 | MS.gene32423:CDS |
| TAGAACATACAAGCAAAGAG+TGG | 0.671247 | 1.4:-12680345 | MS.gene32423:CDS |
| GGTGTTGCAGGTCATTACAT+GGG | 0.674541 | 1.4:-12677560 | MS.gene32423:CDS |
| GCCAGAGGATAAGTTATTCG+GGG | 0.692773 | 1.4:-12677312 | MS.gene32423:CDS |
| GCAGATTGTTCAGATCTCTG+AGG | 0.694743 | 1.4:+12682934 | None:intergenic |
| CTGGCAAACAAACTGATGGG+AGG | 0.698540 | 1.4:-12679361 | MS.gene32423:intron |
| ATGGCTTCACATCAAGCACA+AGG | 0.698886 | 1.4:-12677536 | MS.gene32423:CDS |
| AGAGTTCCGCAAATCATCAG+GGG | 0.699530 | 1.4:-12677709 | MS.gene32423:CDS |
| TACGGTCAACAACAACAACA+GGG | 0.702741 | 1.4:-12677452 | MS.gene32423:CDS |
| CCCAAGTGGGACCTGCTCAG+TGG | 0.703675 | 1.4:-12678489 | MS.gene32423:CDS |
| ACTGAAATACAGAATGCACA+TGG | 0.716588 | 1.4:-12682082 | MS.gene32423:CDS |
| CAGACATTCACATCTCAAGG+TGG | 0.719363 | 1.4:-12678246 | MS.gene32423:CDS |
| TGTACATGACTGAATTGAGG+TGG | 0.724888 | 1.4:+12677731 | None:intergenic |
| GGCTGAGTATTGGCAGACGT+AGG | 0.734336 | 1.4:+12678333 | None:intergenic |
| GCTTCACATCAAGCACAAGG+TGG | 0.738277 | 1.4:-12677533 | MS.gene32423:CDS |
| ATACGTCTTATGTTCCATCG+GGG | 0.761345 | 1.4:-12677346 | MS.gene32423:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 12677250 | 12686690 | 12677250 | ID=MS.gene32423 |
| chr1.4 | mRNA | 12677250 | 12686690 | 12677250 | ID=MS.gene32423.t1;Parent=MS.gene32423 |
| chr1.4 | exon | 12686590 | 12686690 | 12686590 | ID=MS.gene32423.t1.exon1;Parent=MS.gene32423.t1 |
| chr1.4 | CDS | 12686590 | 12686690 | 12686590 | ID=cds.MS.gene32423.t1;Parent=MS.gene32423.t1 |
| chr1.4 | exon | 12685455 | 12685533 | 12685455 | ID=MS.gene32423.t1.exon2;Parent=MS.gene32423.t1 |
| chr1.4 | CDS | 12685455 | 12685533 | 12685455 | ID=cds.MS.gene32423.t1;Parent=MS.gene32423.t1 |
| chr1.4 | exon | 12683390 | 12683488 | 12683390 | ID=MS.gene32423.t1.exon3;Parent=MS.gene32423.t1 |
| chr1.4 | CDS | 12683390 | 12683488 | 12683390 | ID=cds.MS.gene32423.t1;Parent=MS.gene32423.t1 |
| chr1.4 | exon | 12683179 | 12683292 | 12683179 | ID=MS.gene32423.t1.exon4;Parent=MS.gene32423.t1 |
| chr1.4 | CDS | 12683179 | 12683292 | 12683179 | ID=cds.MS.gene32423.t1;Parent=MS.gene32423.t1 |
| chr1.4 | exon | 12682814 | 12682974 | 12682814 | ID=MS.gene32423.t1.exon5;Parent=MS.gene32423.t1 |
| chr1.4 | CDS | 12682814 | 12682974 | 12682814 | ID=cds.MS.gene32423.t1;Parent=MS.gene32423.t1 |
| chr1.4 | exon | 12682027 | 12682108 | 12682027 | ID=MS.gene32423.t1.exon6;Parent=MS.gene32423.t1 |
| chr1.4 | CDS | 12682027 | 12682108 | 12682027 | ID=cds.MS.gene32423.t1;Parent=MS.gene32423.t1 |
| chr1.4 | exon | 12680323 | 12680408 | 12680323 | ID=MS.gene32423.t1.exon7;Parent=MS.gene32423.t1 |
| chr1.4 | CDS | 12680323 | 12680408 | 12680323 | ID=cds.MS.gene32423.t1;Parent=MS.gene32423.t1 |
| chr1.4 | exon | 12679362 | 12679565 | 12679362 | ID=MS.gene32423.t1.exon8;Parent=MS.gene32423.t1 |
| chr1.4 | CDS | 12679362 | 12679565 | 12679362 | ID=cds.MS.gene32423.t1;Parent=MS.gene32423.t1 |
| chr1.4 | exon | 12678118 | 12678611 | 12678118 | ID=MS.gene32423.t1.exon9;Parent=MS.gene32423.t1 |
| chr1.4 | CDS | 12678118 | 12678611 | 12678118 | ID=cds.MS.gene32423.t1;Parent=MS.gene32423.t1 |
| chr1.4 | exon | 12677250 | 12677863 | 12677250 | ID=MS.gene32423.t1.exon10;Parent=MS.gene32423.t1 |
| chr1.4 | CDS | 12677250 | 12677863 | 12677250 | ID=cds.MS.gene32423.t1;Parent=MS.gene32423.t1 |
| Gene Sequence |
| Protein sequence |