Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32637.t1 | XP_003603391.1 | 91.7 | 563 | 35 | 5 | 1 | 559 | 65 | 619 | 1.30E-282 | 981.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32637.t1 | G7JB14 | 91.7 | 563 | 35 | 5 | 1 | 559 | 65 | 619 | 9.1e-283 | 981.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049281 | MS.gene32637 | 0.821163 | 4.67E-53 | -1.69E-46 |
| MS.gene050363 | MS.gene32637 | 0.817292 | 3.56E-52 | -1.69E-46 |
| MS.gene055550 | MS.gene32637 | 0.803661 | 3.13E-49 | -1.69E-46 |
| MS.gene058628 | MS.gene32637 | 0.814157 | 1.78E-51 | -1.69E-46 |
| MS.gene058629 | MS.gene32637 | 0.822919 | 1.83E-53 | -1.69E-46 |
| MS.gene058630 | MS.gene32637 | 0.815601 | 8.50E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32637.t1 | MTR_3g107090 | 91.119 | 563 | 38 | 5 | 1 | 559 | 65 | 619 | 0.0 | 954 |
| MS.gene32637.t1 | MTR_1g056180 | 50.311 | 322 | 116 | 5 | 260 | 543 | 419 | 734 | 1.51e-101 | 323 |
| MS.gene32637.t1 | MTR_7g106540 | 48.882 | 313 | 122 | 7 | 260 | 541 | 211 | 516 | 7.33e-89 | 284 |
| MS.gene32637.t1 | MTR_7g106540 | 48.276 | 319 | 127 | 7 | 260 | 547 | 408 | 719 | 6.95e-87 | 284 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32637.t1 | AT2G25460 | 37.770 | 556 | 257 | 17 | 1 | 536 | 52 | 538 | 8.39e-99 | 310 |
| MS.gene32637.t1 | AT3G11760 | 51.389 | 288 | 123 | 4 | 260 | 539 | 417 | 695 | 1.24e-95 | 306 |
| MS.gene32637.t1 | AT5G04860 | 46.307 | 352 | 150 | 8 | 221 | 541 | 236 | 579 | 3.50e-91 | 293 |
| MS.gene32637.t1 | AT5G04860 | 46.023 | 352 | 151 | 8 | 221 | 541 | 387 | 730 | 1.87e-89 | 292 |
| MS.gene32637.t1 | AT2G25460 | 34.625 | 413 | 205 | 14 | 2 | 395 | 53 | 419 | 2.31e-53 | 187 |
| MS.gene32637.t1 | AT2G10560 | 42.562 | 242 | 106 | 7 | 333 | 549 | 1 | 234 | 7.17e-53 | 181 |
Find 110 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGGAAATTCAAGTAAA+TGG | 0.143807 | 3.1:-84886105 | MS.gene32637:CDS |
| CAACTAACTATGTAAATTCT+TGG | 0.246132 | 3.1:+84885629 | None:intergenic |
| AAACACGGGACTATAGAAAA+AGG | 0.282626 | 3.1:-84887068 | MS.gene32637:CDS |
| CTTGTCTTTGTCCCTGAACT+TGG | 0.295468 | 3.1:+84886867 | None:intergenic |
| TCTAAATCAAAATGTTTATC+TGG | 0.298751 | 3.1:+84885833 | None:intergenic |
| GGAAAACTCCTTCTCACGTT+TGG | 0.315799 | 3.1:-84888188 | MS.gene32637:CDS |
| TAAAGATGAAGAAGTTAATA+AGG | 0.320412 | 3.1:-84885465 | MS.gene32637:CDS |
| TTACTATATCATTGATTCAT+TGG | 0.323701 | 3.1:-84885567 | MS.gene32637:CDS |
| GAGAAGTTTCATTGCTTAGA+AGG | 0.338959 | 3.1:-84885737 | MS.gene32637:CDS |
| CTTTATTACAGGTTTGTCTA+AGG | 0.339470 | 3.1:-84887163 | MS.gene32637:intron |
| TTGGTATACCTTGATTTGTA+TGG | 0.347267 | 3.1:+84885942 | None:intergenic |
| TTGAGAAAGAGGAGAAGAAA+TGG | 0.356522 | 3.1:-84885325 | MS.gene32637:CDS |
| TACTATATCATTGATTCATT+GGG | 0.366292 | 3.1:-84885566 | MS.gene32637:CDS |
| GAAGATGTGGAAGAGGATAA+AGG | 0.367369 | 3.1:+84885245 | None:intergenic |
| GAAAACTCCTTCTCACGTTT+GGG | 0.368015 | 3.1:-84888187 | MS.gene32637:CDS |
| TTCAGGGACAAAGACAAGTT+TGG | 0.368520 | 3.1:-84886862 | MS.gene32637:CDS |
| AATCATCGAAGCTACCCTTT+TGG | 0.370953 | 3.1:-84887868 | MS.gene32637:intron |
| AACAACTAAAGGTCTCAAAT+TGG | 0.378951 | 3.1:+84885796 | None:intergenic |
| TTCAAAGGAAGCTTCCTATA+CGG | 0.379927 | 3.1:-84887908 | MS.gene32637:CDS |
| TGCCGTAGATTCGTCGCTGC+CGG | 0.386738 | 3.1:-84888210 | MS.gene32637:CDS |
| CAAGAATTTACATAGTTAGT+TGG | 0.387389 | 3.1:-84885628 | MS.gene32637:CDS |
| GACCTCTGTGTCTTCAACCT+TGG | 0.397971 | 3.1:-84888156 | MS.gene32637:CDS |
| CTTCCTTTGAACATTGGATT+CGG | 0.408918 | 3.1:+84887920 | None:intergenic |
| TCTCTAAGATCAAACCTTCA+AGG | 0.409683 | 3.1:-84886121 | MS.gene32637:CDS |
| ATTTACTTGAATTTCCTTGA+AGG | 0.411143 | 3.1:+84886107 | None:intergenic |
| GATGATTCATGTGTGATGTA+TGG | 0.412386 | 3.1:-84885497 | MS.gene32637:CDS |
| TCTAAGCAATGAAACTTCTC+AGG | 0.424509 | 3.1:+84885740 | None:intergenic |
| TGTGTATAGGGACAGGGTGG+TGG | 0.426747 | 3.1:-84888014 | MS.gene32637:intron |
| GGAAGAACCAAAAGGTAAAA+TGG | 0.433515 | 3.1:-84887991 | MS.gene32637:CDS |
| CAAGTTTGGATATCAATAGA+AGG | 0.433928 | 3.1:-84886848 | MS.gene32637:CDS |
| GATGAAGAAGTTAATAAGGA+TGG | 0.435976 | 3.1:-84885461 | MS.gene32637:CDS |
| TCAAGGAAATTCAAGTAAAT+GGG | 0.436962 | 3.1:-84886104 | MS.gene32637:CDS |
| AATCCATCATACTCCTTTCA+CGG | 0.437364 | 3.1:-84886775 | MS.gene32637:intron |
| GTCTAAGGTTATTGAAGCAC+AGG | 0.440478 | 3.1:-84887148 | MS.gene32637:CDS |
| CCTATACGGTTGAAGGTCAA+TGG | 0.445443 | 3.1:-84887894 | MS.gene32637:CDS |
| GGGGACCCATCTGACTCATA+TGG | 0.466820 | 3.1:+84886981 | None:intergenic |
| GAAAATCAATCTGCAATTGC+CGG | 0.467500 | 3.1:+84885279 | None:intergenic |
| AGTTAGACAACTTGAGAAAG+AGG | 0.469446 | 3.1:-84885336 | MS.gene32637:CDS |
| GAAGCTTCCTATACGGTTGA+AGG | 0.474253 | 3.1:-84887901 | MS.gene32637:CDS |
| GTGTATAGGGACAGGGTGGT+GGG | 0.476052 | 3.1:-84888013 | MS.gene32637:intron |
| CACTGGCTCCATACAAATCA+AGG | 0.476684 | 3.1:-84885950 | MS.gene32637:CDS |
| GGATATCAATAGAAGGTTCA+AGG | 0.483015 | 3.1:-84886841 | MS.gene32637:CDS |
| TCACACAAGGTTCATCTGAA+TGG | 0.483310 | 3.1:-84885895 | MS.gene32637:CDS |
| CCATTGACCTTCAACCGTAT+AGG | 0.487380 | 3.1:+84887894 | None:intergenic |
| AGGAAGCTTCCTTTGAACAT+TGG | 0.488002 | 3.1:+84887914 | None:intergenic |
| AAAGTAACTCTTGACTCTGT+GGG | 0.490195 | 3.1:+84886891 | None:intergenic |
| GCCGTAGATTCGTCGCTGCC+GGG | 0.491896 | 3.1:-84888209 | MS.gene32637:CDS |
| TTGTCAAATTGAGTTCTTGT+TGG | 0.492779 | 3.1:+84885923 | None:intergenic |
| TGCAATTGCCGGTGAAGATA+AGG | 0.492998 | 3.1:+84885290 | None:intergenic |
| CTTTGATCAACGAAGTGAAA+AGG | 0.494079 | 3.1:-84886017 | MS.gene32637:CDS |
| GGCAGACATGTTTGAGTCCA+AGG | 0.501776 | 3.1:+84888139 | None:intergenic |
| TTTCAAATCCTTATCTTCAC+CGG | 0.501952 | 3.1:-84885298 | MS.gene32637:CDS |
| ATGAAGAAGTTAATAAGGAT+GGG | 0.505362 | 3.1:-84885460 | MS.gene32637:CDS |
| TCCCGGCAGCGACGAATCTA+CGG | 0.508314 | 3.1:+84888208 | None:intergenic |
| TTCTGAGGCAGAACAACTAA+AGG | 0.508890 | 3.1:+84885785 | None:intergenic |
| TGAACTGCCACCGCTTGTTG+TGG | 0.511778 | 3.1:+84886926 | None:intergenic |
| TGTATAGGGACAGGGTGGTG+GGG | 0.520486 | 3.1:-84888012 | MS.gene32637:intron |
| GATATCAATAGAAGGTTCAA+GGG | 0.528253 | 3.1:-84886840 | MS.gene32637:CDS |
| GCAGGGAGTGATATGACTGC+AGG | 0.531153 | 3.1:+84888230 | None:intergenic |
| GGCAGCGACGAATCTACGGC+AGG | 0.532444 | 3.1:+84888212 | None:intergenic |
| ATGATTCATGTGTGATGTAT+GGG | 0.535106 | 3.1:-84885496 | MS.gene32637:CDS |
| TAGAATTGACATACCGTGAA+AGG | 0.538980 | 3.1:+84886762 | None:intergenic |
| CAACATCCATATGAGTCAGA+TGG | 0.542549 | 3.1:-84886987 | MS.gene32637:CDS |
| CAACATAGAAGATGTGGAAG+AGG | 0.543261 | 3.1:+84885238 | None:intergenic |
| GAAATACAACATAGAAGATG+TGG | 0.546990 | 3.1:+84885232 | None:intergenic |
| CAACGAAGTGAAAAGGCCTC+TGG | 0.548675 | 3.1:-84886010 | MS.gene32637:CDS |
| AAGAATGGAGCGTACCAAAA+GGG | 0.552626 | 3.1:+84887854 | None:intergenic |
| TGAAGAAGTTAATAAGGATG+GGG | 0.560236 | 3.1:-84885459 | MS.gene32637:CDS |
| AACAATGTGAAGTTTGATGA+AGG | 0.564539 | 3.1:-84887017 | MS.gene32637:CDS |
| ATACCGTGAAAGGAGTATGA+TGG | 0.566245 | 3.1:+84886772 | None:intergenic |
| CAATAGAAGGTTCAAGGGGT+GGG | 0.566587 | 3.1:-84886835 | MS.gene32637:CDS |
| AGCAATAACCTTTGAAAACA+CGG | 0.571826 | 3.1:-84887105 | MS.gene32637:CDS |
| AACATCCATATGAGTCAGAT+GGG | 0.577022 | 3.1:-84886986 | MS.gene32637:CDS |
| TCAATAGAAGGTTCAAGGGG+TGG | 0.579144 | 3.1:-84886836 | MS.gene32637:CDS |
| TGATTGTCCCAAACGTGAGA+AGG | 0.581864 | 3.1:+84888180 | None:intergenic |
| TAGTTGCACTAATATCTCAC+TGG | 0.582311 | 3.1:-84885967 | MS.gene32637:CDS |
| ACCAAAAGGTAAAATGGTGG+TGG | 0.584450 | 3.1:-84887985 | MS.gene32637:CDS |
| CTAAGCAATGAAACTTCTCA+GGG | 0.586124 | 3.1:+84885741 | None:intergenic |
| TGTAGAAGTTTCTAATTGAG+CGG | 0.593072 | 3.1:+84886797 | None:intergenic |
| AGACCGAATCCAATGTTCAA+AGG | 0.597972 | 3.1:-84887923 | MS.gene32637:CDS |
| AGTTTGTATGACTCTAGCGA+TGG | 0.605787 | 3.1:-84887955 | MS.gene32637:CDS |
| TTGTATGACTCTAGCGATGG+AGG | 0.606457 | 3.1:-84887952 | MS.gene32637:CDS |
| AAAGGTAAAATGGTGGTGGT+CGG | 0.616409 | 3.1:-84887981 | MS.gene32637:CDS |
| GACTCATCAGAGTCAAACAC+AGG | 0.617667 | 3.1:+84886960 | None:intergenic |
| GGTGGTGGGGAAGAACCAAA+AGG | 0.617941 | 3.1:-84887999 | MS.gene32637:CDS |
| AAAAGTAACTCTTGACTCTG+TGG | 0.625814 | 3.1:+84886890 | None:intergenic |
| GAAGAAGTTAATAAGGATGG+GGG | 0.628518 | 3.1:-84885458 | MS.gene32637:CDS |
| AAACCTGTGTATGATTTCTG+AGG | 0.630083 | 3.1:+84885770 | None:intergenic |
| CAGATGAACCTTGTGTGATG+AGG | 0.645553 | 3.1:+84885900 | None:intergenic |
| TTTGACAACCTCATCACACA+AGG | 0.646349 | 3.1:-84885908 | MS.gene32637:CDS |
| CAGGGAGTGATATGACTGCA+GGG | 0.648373 | 3.1:+84888231 | None:intergenic |
| GCAGCGACGAATCTACGGCA+GGG | 0.650761 | 3.1:+84888213 | None:intergenic |
| AACGAATCCACAACAAGCGG+TGG | 0.661870 | 3.1:-84886933 | MS.gene32637:CDS |
| GGTGCAAAGAGTAGTTCAAG+AGG | 0.665895 | 3.1:-84885437 | MS.gene32637:CDS |
| CTGCCTCAGAAATCATACAC+AGG | 0.669234 | 3.1:-84885773 | MS.gene32637:CDS |
| TAAAGTCAGATAAGAAACAC+GGG | 0.683630 | 3.1:-84887082 | MS.gene32637:CDS |
| AAGTAACTCTTGACTCTGTG+GGG | 0.684551 | 3.1:+84886892 | None:intergenic |
| TCGAACGAATCCACAACAAG+CGG | 0.686566 | 3.1:-84886936 | MS.gene32637:CDS |
| TGTGCATGCACTCTCACCAG+AGG | 0.687640 | 3.1:+84885994 | None:intergenic |
| ACTCATCAGAGTCAAACACA+GGG | 0.693622 | 3.1:+84886961 | None:intergenic |
| ATATCAATAGAAGGTTCAAG+GGG | 0.705222 | 3.1:-84886839 | MS.gene32637:CDS |
| GTAAAGTCAGATAAGAAACA+CGG | 0.708686 | 3.1:-84887083 | MS.gene32637:CDS |
| AGAACCAAAAGGTAAAATGG+TGG | 0.711514 | 3.1:-84887988 | MS.gene32637:CDS |
| ACTATGTGTGTATAGGGACA+GGG | 0.728676 | 3.1:-84888020 | MS.gene32637:intron |
| ATGTGTGTATAGGGACAGGG+TGG | 0.746193 | 3.1:-84888017 | MS.gene32637:intron |
| TAAGCAATGAAACTTCTCAG+GGG | 0.754329 | 3.1:+84885742 | None:intergenic |
| ATAAGACATTAAATGTGACG+TGG | 0.758337 | 3.1:+84888118 | None:intergenic |
| GTCCAAGGTTGAAGACACAG+AGG | 0.758408 | 3.1:+84888154 | None:intergenic |
| GGAGTGATATGACTGCAGGG+TGG | 0.776711 | 3.1:+84888234 | None:intergenic |
| CTCATCAGAGTCAAACACAG+GGG | 0.787704 | 3.1:+84886962 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTATTTAATTAATTAA+CGG | + | chr3.1:84886261-84886280 | None:intergenic | 0.0% |
| !! | TTTAAAAAATTCAATATTCA+AGG | + | chr3.1:84886899-84886918 | None:intergenic | 10.0% |
| !!! | AAATAATTAATTTTTAACGA+AGG | - | chr3.1:84886271-84886290 | MS.gene32637:intron | 10.0% |
| !! | GATTTATGAACATAAATAAT+AGG | - | chr3.1:84885952-84885971 | MS.gene32637:CDS | 15.0% |
| !!! | AAATAGTTTTCTTCAAAAAA+AGG | + | chr3.1:84886874-84886893 | None:intergenic | 15.0% |
| !!! | AATTATTTCTTTATCATTAG+CGG | - | chr3.1:84886937-84886956 | MS.gene32637:CDS | 15.0% |
| !!! | AATTTTCTTGATTTAGTTTA+GGG | - | chr3.1:84887254-84887273 | MS.gene32637:intron | 15.0% |
| !!! | TAATTTTCTTGATTTAGTTT+AGG | - | chr3.1:84887253-84887272 | MS.gene32637:intron | 15.0% |
| !! | ACATTGATCTGATAAATATA+TGG | + | chr3.1:84886030-84886049 | None:intergenic | 20.0% |
| !! | GAATGAATTGATTAATTACA+TGG | - | chr3.1:84885798-84885817 | MS.gene32637:CDS | 20.0% |
| !! | TAAACATGAGTTCATAAATA+AGG | - | chr3.1:84887102-84887121 | MS.gene32637:CDS | 20.0% |
| !! | TAAAGATGAAGAAGTTAATA+AGG | - | chr3.1:84888001-84888020 | MS.gene32637:CDS | 20.0% |
| !! | TAATGTCTTATATGTAAGAT+AGG | - | chr3.1:84885360-84885379 | MS.gene32637:CDS | 20.0% |
| !! | TATAGTAATGAAGAAAAGAA+TGG | + | chr3.1:84885630-84885649 | None:intergenic | 20.0% |
| !! | TCTAAATCAAAATGTTTATC+TGG | + | chr3.1:84887636-84887655 | None:intergenic | 20.0% |
| !! | TTATGAACATAAATAATAGG+TGG | - | chr3.1:84885955-84885974 | MS.gene32637:CDS | 20.0% |
| !! | TTGCTTTCTCATTTATTAAT+TGG | - | chr3.1:84885669-84885688 | MS.gene32637:CDS | 20.0% |
| !!! | AAATATATTTTAAGCAGAGA+TGG | - | chr3.1:84887390-84887409 | MS.gene32637:intron | 20.0% |
| !!! | ATATATTTTAGTACGAAACA+TGG | + | chr3.1:84885760-84885779 | None:intergenic | 20.0% |
| !!! | ATTATTTCTTTATCATTAGC+GGG | - | chr3.1:84886938-84886957 | MS.gene32637:CDS | 20.0% |
| !!! | ATTTTCTTGATTTAGTTTAG+GGG | - | chr3.1:84887255-84887274 | MS.gene32637:intron | 20.0% |
| !!! | TACTATATCATTGATTCATT+GGG | - | chr3.1:84887900-84887919 | MS.gene32637:CDS | 20.0% |
| !!! | TGATCATTTCTTTATTTTGA+AGG | - | chr3.1:84887863-84887882 | MS.gene32637:intron | 20.0% |
| !!! | TTACTATATCATTGATTCAT+TGG | - | chr3.1:84887899-84887918 | MS.gene32637:CDS | 20.0% |
| !!! | TTTTGCAAACAATTGATTTT+TGG | + | chr3.1:84886219-84886238 | None:intergenic | 20.0% |
| ! | AGTTACAAAGAAACAAAGTA+GGG | + | chr3.1:84886775-84886794 | None:intergenic | 25.0% |
| ! | ATGAAGAAGTTAATAAGGAT+GGG | - | chr3.1:84888006-84888025 | MS.gene32637:CDS | 25.0% |
| ! | ATTTACTTGAATTTCCTTGA+AGG | + | chr3.1:84887362-84887381 | None:intergenic | 25.0% |
| ! | CAACTAACTATGTAAATTCT+TGG | + | chr3.1:84887840-84887859 | None:intergenic | 25.0% |
| ! | CAAGAATTTACATAGTTAGT+TGG | - | chr3.1:84887838-84887857 | MS.gene32637:intron | 25.0% |
| ! | CATATCCATCTTAAAAATCA+TGG | - | chr3.1:84885836-84885855 | MS.gene32637:CDS | 25.0% |
| ! | TAAAACTACACAAATCTTAG+TGG | + | chr3.1:84886124-84886143 | None:intergenic | 25.0% |
| ! | TAAATCAAGCAGAATAATGT+TGG | + | chr3.1:84885938-84885957 | None:intergenic | 25.0% |
| ! | TAGTTACAAAGAAACAAAGT+AGG | + | chr3.1:84886776-84886795 | None:intergenic | 25.0% |
| ! | TATTAGTCCTTTGTCAAAAA+AGG | - | chr3.1:84886829-84886848 | MS.gene32637:CDS | 25.0% |
| ! | TCAAGGAAATTCAAGTAAAT+GGG | - | chr3.1:84887362-84887381 | MS.gene32637:intron | 25.0% |
| ! | TTCAAGGAAATTCAAGTAAA+TGG | - | chr3.1:84887361-84887380 | MS.gene32637:intron | 25.0% |
| !! | ATTTGTTAGTCATCTGTTAT+CGG | + | chr3.1:84885996-84886015 | None:intergenic | 25.0% |
| !! | CTATGTCTTTTGATGAAATA+TGG | - | chr3.1:84887754-84887773 | MS.gene32637:intron | 25.0% |
| !! | TTTAATTAATTAACGGGTGT+TGG | + | chr3.1:84886254-84886273 | None:intergenic | 25.0% |
| !!! | GATTTTTAAGATGGATATGA+AGG | + | chr3.1:84885835-84885854 | None:intergenic | 25.0% |
| !!! | TTTCTTTATTTTGAAGGTAG+AGG | - | chr3.1:84887869-84887888 | MS.gene32637:CDS | 25.0% |
| !!! | TTTTCTTGATTTAGTTTAGG+GGG | - | chr3.1:84887256-84887275 | MS.gene32637:intron | 25.0% |
| AAAGTCTATCAAAGATGCAT+TGG | - | chr3.1:84886987-84887006 | MS.gene32637:CDS | 30.0% | |
| AACAACTAAAGGTCTCAAAT+TGG | + | chr3.1:84887673-84887692 | None:intergenic | 30.0% | |
| AACAATGTGAAGTTTGATGA+AGG | - | chr3.1:84886449-84886468 | MS.gene32637:intron | 30.0% | |
| AAGTCTATCAAAGATGCATT+GGG | - | chr3.1:84886988-84887007 | MS.gene32637:CDS | 30.0% | |
| AAGTGCATGTTAGAAATTGA+TGG | - | chr3.1:84887291-84887310 | MS.gene32637:intron | 30.0% | |
| ACAAATTATTGTATGGCTTG+AGG | - | chr3.1:84887041-84887060 | MS.gene32637:CDS | 30.0% | |
| ATAAGACATTAAATGTGACG+TGG | + | chr3.1:84885351-84885370 | None:intergenic | 30.0% | |
| ATATCAATAGAAGGTTCAAG+GGG | - | chr3.1:84886627-84886646 | MS.gene32637:intron | 30.0% | |
| ATCAATTGTTTGCAAAAGCA+AGG | - | chr3.1:84886222-84886241 | MS.gene32637:intron | 30.0% | |
| ATGATTCATGTGTGATGTAT+GGG | - | chr3.1:84887970-84887989 | MS.gene32637:CDS | 30.0% | |
| CAAATTATTGTATGGCTTGA+GGG | - | chr3.1:84887042-84887061 | MS.gene32637:CDS | 30.0% | |
| CAAGTTTGGATATCAATAGA+AGG | - | chr3.1:84886618-84886637 | MS.gene32637:intron | 30.0% | |
| CTTTATTACAGGTTTGTCTA+AGG | - | chr3.1:84886303-84886322 | MS.gene32637:intron | 30.0% | |
| GAAATACAACATAGAAGATG+TGG | + | chr3.1:84888237-84888256 | None:intergenic | 30.0% | |
| GATATCAATAGAAGGTTCAA+GGG | - | chr3.1:84886626-84886645 | MS.gene32637:intron | 30.0% | |
| GATGAAGAAGTTAATAAGGA+TGG | - | chr3.1:84888005-84888024 | MS.gene32637:CDS | 30.0% | |
| GGTGAGTAATACTTTATTAC+AGG | - | chr3.1:84886292-84886311 | MS.gene32637:intron | 30.0% | |
| GTAAAGTCAGATAAGAAACA+CGG | - | chr3.1:84886383-84886402 | MS.gene32637:intron | 30.0% | |
| TAAAGTCAGATAAGAAACAC+GGG | - | chr3.1:84886384-84886403 | MS.gene32637:intron | 30.0% | |
| TGAAGAAGTTAATAAGGATG+GGG | - | chr3.1:84888007-84888026 | MS.gene32637:CDS | 30.0% | |
| TGTAGAAGTTTCTAATTGAG+CGG | + | chr3.1:84886672-84886691 | None:intergenic | 30.0% | |
| TTGTCAAATTGAGTTCTTGT+TGG | + | chr3.1:84887546-84887565 | None:intergenic | 30.0% | |
| TTTCAAATCCTTATCTTCAC+CGG | - | chr3.1:84888168-84888187 | MS.gene32637:CDS | 30.0% | |
| TTTGTTAGTCATCTGTTATC+GGG | + | chr3.1:84885995-84886014 | None:intergenic | 30.0% | |
| ! | AGCAATAACCTTTGAAAACA+CGG | - | chr3.1:84886361-84886380 | MS.gene32637:intron | 30.0% |
| ! | ATGTGTTACTATGTGTGTAT+AGG | - | chr3.1:84885439-84885458 | MS.gene32637:CDS | 30.0% |
| ! | TGTGTTACTATGTGTGTATA+GGG | - | chr3.1:84885440-84885459 | MS.gene32637:CDS | 30.0% |
| !! | CTCAACCATGATTTTTAAGA+TGG | + | chr3.1:84885844-84885863 | None:intergenic | 30.0% |
| !! | TTGGTATACCTTGATTTGTA+TGG | + | chr3.1:84887527-84887546 | None:intergenic | 30.0% |
| !!! | CTAATAGCCTTTTTTGACAA+AGG | + | chr3.1:84886839-84886858 | None:intergenic | 30.0% |
| AAAAGTAACTCTTGACTCTG+TGG | + | chr3.1:84886579-84886598 | None:intergenic | 35.0% | |
| AAACACGGGACTATAGAAAA+AGG | - | chr3.1:84886398-84886417 | MS.gene32637:intron | 35.0% | |
| AAACATGGCATGTGTAATAG+AGG | + | chr3.1:84885745-84885764 | None:intergenic | 35.0% | |
| AAACCTGTGTATGATTTCTG+AGG | + | chr3.1:84887699-84887718 | None:intergenic | 35.0% | |
| AAAGTAACTCTTGACTCTGT+GGG | + | chr3.1:84886578-84886597 | None:intergenic | 35.0% | |
| AACACGGGACTATAGAAAAA+GGG | - | chr3.1:84886399-84886418 | MS.gene32637:intron | 35.0% | |
| AACATCCATATGAGTCAGAT+GGG | - | chr3.1:84886480-84886499 | MS.gene32637:intron | 35.0% | |
| AATAATAGGTGGTCTGATAG+CGG | - | chr3.1:84885966-84885985 | MS.gene32637:CDS | 35.0% | |
| AATCCATCATACTCCTTTCA+CGG | - | chr3.1:84886691-84886710 | MS.gene32637:intron | 35.0% | |
| AATTGTTTGCAAAAGCAAGG+TGG | - | chr3.1:84886225-84886244 | MS.gene32637:intron | 35.0% | |
| AGAACCAAAAGGTAAAATGG+TGG | - | chr3.1:84885478-84885497 | MS.gene32637:CDS | 35.0% | |
| AGAATAATGTTGGTCGTGAA+GGG | + | chr3.1:84885928-84885947 | None:intergenic | 35.0% | |
| AGTTAGACAACTTGAGAAAG+AGG | - | chr3.1:84888130-84888149 | MS.gene32637:CDS | 35.0% | |
| CAACAACAACAACAACAACA+AGG | - | chr3.1:84887788-84887807 | MS.gene32637:intron | 35.0% | |
| CTAAGCAATGAAACTTCTCA+GGG | + | chr3.1:84887728-84887747 | None:intergenic | 35.0% | |
| CTTCCTTTGAACATTGGATT+CGG | + | chr3.1:84885549-84885568 | None:intergenic | 35.0% | |
| CTTTGATCAACGAAGTGAAA+AGG | - | chr3.1:84887449-84887468 | MS.gene32637:intron | 35.0% | |
| GAAAATCAATCTGCAATTGC+CGG | + | chr3.1:84888190-84888209 | None:intergenic | 35.0% | |
| GAAGAAGTTAATAAGGATGG+GGG | - | chr3.1:84888008-84888027 | MS.gene32637:CDS | 35.0% | |
| GAGAAGTTTCATTGCTTAGA+AGG | - | chr3.1:84887729-84887748 | MS.gene32637:intron | 35.0% | |
| GATGATTCATGTGTGATGTA+TGG | - | chr3.1:84887969-84887988 | MS.gene32637:CDS | 35.0% | |
| GGAAGAACCAAAAGGTAAAA+TGG | - | chr3.1:84885475-84885494 | MS.gene32637:CDS | 35.0% | |
| GGATATCAATAGAAGGTTCA+AGG | - | chr3.1:84886625-84886644 | MS.gene32637:intron | 35.0% | |
| TAAGCAATGAAACTTCTCAG+GGG | + | chr3.1:84887727-84887746 | None:intergenic | 35.0% | |
| TAGAATTGACATACCGTGAA+AGG | + | chr3.1:84886707-84886726 | None:intergenic | 35.0% | |
| TAGTTGCACTAATATCTCAC+TGG | - | chr3.1:84887499-84887518 | MS.gene32637:intron | 35.0% | |
| TCGCGCTACAAATTATTGTA+TGG | - | chr3.1:84887034-84887053 | MS.gene32637:CDS | 35.0% | |
| TCTAAGCAATGAAACTTCTC+AGG | + | chr3.1:84887729-84887748 | None:intergenic | 35.0% | |
| TCTGATTTCTGCAAAATGAG+AGG | + | chr3.1:84887318-84887337 | None:intergenic | 35.0% | |
| TTCAAAGGAAGCTTCCTATA+CGG | - | chr3.1:84885558-84885577 | MS.gene32637:CDS | 35.0% | |
| TTGAGAAAGAGGAGAAGAAA+TGG | - | chr3.1:84888141-84888160 | MS.gene32637:CDS | 35.0% | |
| ! | CTTTTCACTTCGTTGATCAA+AGG | + | chr3.1:84887451-84887470 | None:intergenic | 35.0% |
| ! | TGAAGGGGTGTATTTATAAG+TGG | + | chr3.1:84885912-84885931 | None:intergenic | 35.0% |
| ! | TGACTTTACCGTGTTTTCAA+AGG | + | chr3.1:84886372-84886391 | None:intergenic | 35.0% |
| !! | TCTCTAAGATCAAACCTTCA+AGG | - | chr3.1:84887345-84887364 | MS.gene32637:intron | 35.0% |
| !!! | ACTTTTTGAAGGGTGTCAAA+GGG | - | chr3.1:84887929-84887948 | MS.gene32637:CDS | 35.0% |
| !!! | AGAGTTACTTTTCCAAGTTC+AGG | - | chr3.1:84886587-84886606 | MS.gene32637:intron | 35.0% |
| !!! | AGTTTTGAGATAGTTTGTCG+TGG | - | chr3.1:84888059-84888078 | MS.gene32637:intron | 35.0% |
| !!! | CGTTAGTTTTGAGCTTTGAT+TGG | + | chr3.1:84887416-84887435 | None:intergenic | 35.0% |
| !!! | GAGGTATTGCCTTCTATTTT+TGG | + | chr3.1:84885726-84885745 | None:intergenic | 35.0% |
| !!! | GAGTTACTTTTCCAAGTTCA+GGG | - | chr3.1:84886588-84886607 | MS.gene32637:intron | 35.0% |
| !!! | GGTTTTAAGGTACGATGAAA+GGG | + | chr3.1:84885214-84885233 | None:intergenic | 35.0% |
| !!! | TGGTTTTAAGGTACGATGAA+AGG | + | chr3.1:84885215-84885234 | None:intergenic | 35.0% |
| AAAGAATGGAGCGTACCAAA+AGG | + | chr3.1:84885616-84885635 | None:intergenic | 40.0% | |
| AAGAATGGAGCGTACCAAAA+GGG | + | chr3.1:84885615-84885634 | None:intergenic | 40.0% | |
| AAGTAACTCTTGACTCTGTG+GGG | + | chr3.1:84886577-84886596 | None:intergenic | 40.0% | |
| ACCAAAAGGTAAAATGGTGG+TGG | - | chr3.1:84885481-84885500 | MS.gene32637:CDS | 40.0% | |
| ACTATGTGTGTATAGGGACA+GGG | - | chr3.1:84885446-84885465 | MS.gene32637:CDS | 40.0% | |
| ACTCATCAGAGTCAAACACA+GGG | + | chr3.1:84886508-84886527 | None:intergenic | 40.0% | |
| AGACCGAATCCAATGTTCAA+AGG | - | chr3.1:84885543-84885562 | MS.gene32637:CDS | 40.0% | |
| AGGAAGCTTCCTTTGAACAT+TGG | + | chr3.1:84885555-84885574 | None:intergenic | 40.0% | |
| AGTTTGTATGACTCTAGCGA+TGG | - | chr3.1:84885511-84885530 | MS.gene32637:CDS | 40.0% | |
| CAACAACAACAACAACAAGG+TGG | - | chr3.1:84887803-84887822 | MS.gene32637:intron | 40.0% | |
| CAACATAGAAGATGTGGAAG+AGG | + | chr3.1:84888231-84888250 | None:intergenic | 40.0% | |
| CAACATCCATATGAGTCAGA+TGG | - | chr3.1:84886479-84886498 | MS.gene32637:intron | 40.0% | |
| CAGAATAATGTTGGTCGTGA+AGG | + | chr3.1:84885929-84885948 | None:intergenic | 40.0% | |
| CTTCACGCACCAAAAATAGA+AGG | - | chr3.1:84885714-84885733 | MS.gene32637:CDS | 40.0% | |
| GAAAACTCCTTCTCACGTTT+GGG | - | chr3.1:84885279-84885298 | MS.gene32637:CDS | 40.0% | |
| GAAGATGTGGAAGAGGATAA+AGG | + | chr3.1:84888224-84888243 | None:intergenic | 40.0% | |
| GAATAATGTTGGTCGTGAAG+GGG | + | chr3.1:84885927-84885946 | None:intergenic | 40.0% | |
| GTGAAGTGAGCTTGTGAAAT+GGG | + | chr3.1:84885700-84885719 | None:intergenic | 40.0% | |
| TACTATGTGTGTATAGGGAC+AGG | - | chr3.1:84885445-84885464 | MS.gene32637:CDS | 40.0% | |
| TCACACAAGGTTCATCTGAA+TGG | - | chr3.1:84887571-84887590 | MS.gene32637:intron | 40.0% | |
| TTCAGGGACAAAGACAAGTT+TGG | - | chr3.1:84886604-84886623 | MS.gene32637:intron | 40.0% | |
| TTTGACAACCTCATCACACA+AGG | - | chr3.1:84887558-84887577 | MS.gene32637:intron | 40.0% | |
| ! | AATCATCGAAGCTACCCTTT+TGG | - | chr3.1:84885598-84885617 | MS.gene32637:CDS | 40.0% |
| ! | ACCACCACCATTTTACCTTT+TGG | + | chr3.1:84885485-84885504 | None:intergenic | 40.0% |
| ! | AGGGGTGTATTTATAAGTGG+AGG | + | chr3.1:84885909-84885928 | None:intergenic | 40.0% |
| ! | ATACCGTGAAAGGAGTATGA+TGG | + | chr3.1:84886697-84886716 | None:intergenic | 40.0% |
| ! | CGTTTTTGTGAGGTAGTGTT+AGG | + | chr3.1:84885867-84885886 | None:intergenic | 40.0% |
| ! | GTCTAAGGTTATTGAAGCAC+AGG | - | chr3.1:84886318-84886337 | MS.gene32637:intron | 40.0% |
| ! | TGGGTGAGAGACTTTTTGAA+GGG | - | chr3.1:84887919-84887938 | MS.gene32637:CDS | 40.0% |
| ! | TTGGGTGAGAGACTTTTTGA+AGG | - | chr3.1:84887918-84887937 | MS.gene32637:CDS | 40.0% |
| !! | AAAGGTAAAATGGTGGTGGT+CGG | - | chr3.1:84885485-84885504 | MS.gene32637:CDS | 40.0% |
| !! | TTCTGAGGCAGAACAACTAA+AGG | + | chr3.1:84887684-84887703 | None:intergenic | 40.0% |
| !!! | GACTTTTTGAAGGGTGTCAA+AGG | - | chr3.1:84887928-84887947 | MS.gene32637:CDS | 40.0% |
| CAATAGAAGGTTCAAGGGGT+GGG | - | chr3.1:84886631-84886650 | MS.gene32637:intron | 45.0% | |
| CAGATGAACCTTGTGTGATG+AGG | + | chr3.1:84887569-84887588 | None:intergenic | 45.0% | |
| CCATTGACCTTCAACCGTAT+AGG | + | chr3.1:84885575-84885594 | None:intergenic | 45.0% | |
| CCTATACGGTTGAAGGTCAA+TGG | - | chr3.1:84885572-84885591 | MS.gene32637:CDS | 45.0% | |
| CCTCACAAAAACGACTTGTG+AGG | - | chr3.1:84885874-84885893 | MS.gene32637:CDS | 45.0% | |
| CGTGAAGTGAGCTTGTGAAA+TGG | + | chr3.1:84885701-84885720 | None:intergenic | 45.0% | |
| CTCATCAGAGTCAAACACAG+GGG | + | chr3.1:84886507-84886526 | None:intergenic | 45.0% | |
| CTGCCTCAGAAATCATACAC+AGG | - | chr3.1:84887693-84887712 | MS.gene32637:intron | 45.0% | |
| CTTGTCTTTGTCCCTGAACT+TGG | + | chr3.1:84886602-84886621 | None:intergenic | 45.0% | |
| GAAGCTTCCTATACGGTTGA+AGG | - | chr3.1:84885565-84885584 | MS.gene32637:CDS | 45.0% | |
| GACTCATCAGAGTCAAACAC+AGG | + | chr3.1:84886509-84886528 | None:intergenic | 45.0% | |
| GGAAAACTCCTTCTCACGTT+TGG | - | chr3.1:84885278-84885297 | MS.gene32637:CDS | 45.0% | |
| GGTGCAAAGAGTAGTTCAAG+AGG | - | chr3.1:84888029-84888048 | MS.gene32637:intron | 45.0% | |
| TCAATAGAAGGTTCAAGGGG+TGG | - | chr3.1:84886630-84886649 | MS.gene32637:intron | 45.0% | |
| TCGAACGAATCCACAACAAG+CGG | - | chr3.1:84886530-84886549 | MS.gene32637:intron | 45.0% | |
| TGATTGTCCCAAACGTGAGA+AGG | + | chr3.1:84885289-84885308 | None:intergenic | 45.0% | |
| TGCAATTGCCGGTGAAGATA+AGG | + | chr3.1:84888179-84888198 | None:intergenic | 45.0% | |
| TTGTATGACTCTAGCGATGG+AGG | - | chr3.1:84885514-84885533 | MS.gene32637:CDS | 45.0% | |
| ! | AACGTGAGAAGGAGTTTTCC+CGG | + | chr3.1:84885278-84885297 | None:intergenic | 45.0% |
| !! | ATGACTGCAGGGTGGTTTTA+AGG | + | chr3.1:84885227-84885246 | None:intergenic | 45.0% |
| !! | CACTGGCTCCATACAAATCA+AGG | - | chr3.1:84887516-84887535 | MS.gene32637:intron | 45.0% |
| !!! | CCTCACAAGTCGTTTTTGTG+AGG | + | chr3.1:84885877-84885896 | None:intergenic | 45.0% |
| !! | AAATAGTAATATTATTAAAT+TGG | + | chr3.1:84887228-84887247 | None:intergenic | 5.0% |
| !! | TAATTATTTAATTAATTAAC+GGG | + | chr3.1:84886260-84886279 | None:intergenic | 5.0% |
| AACGAATCCACAACAAGCGG+TGG | - | chr3.1:84886533-84886552 | MS.gene32637:intron | 50.0% | |
| ATGTGTGTATAGGGACAGGG+TGG | - | chr3.1:84885449-84885468 | MS.gene32637:CDS | 50.0% | |
| CAACGAAGTGAAAAGGCCTC+TGG | - | chr3.1:84887456-84887475 | MS.gene32637:intron | 50.0% | |
| CAGGGAGTGATATGACTGCA+GGG | + | chr3.1:84885238-84885257 | None:intergenic | 50.0% | |
| GACCTCTGTGTCTTCAACCT+TGG | - | chr3.1:84885310-84885329 | MS.gene32637:CDS | 50.0% | |
| GGCAGACATGTTTGAGTCCA+AGG | + | chr3.1:84885330-84885349 | None:intergenic | 50.0% | |
| GTCCAAGGTTGAAGACACAG+AGG | + | chr3.1:84885315-84885334 | None:intergenic | 50.0% | |
| GCAGGGAGTGATATGACTGC+AGG | + | chr3.1:84885239-84885258 | None:intergenic | 55.0% | |
| GGAGTGATATGACTGCAGGG+TGG | + | chr3.1:84885235-84885254 | None:intergenic | 55.0% | |
| GGGGACCCATCTGACTCATA+TGG | + | chr3.1:84886488-84886507 | None:intergenic | 55.0% | |
| GTGTATAGGGACAGGGTGGT+GGG | - | chr3.1:84885453-84885472 | MS.gene32637:CDS | 55.0% | |
| TGTATAGGGACAGGGTGGTG+GGG | - | chr3.1:84885454-84885473 | MS.gene32637:CDS | 55.0% | |
| TGTGCATGCACTCTCACCAG+AGG | + | chr3.1:84887475-84887494 | None:intergenic | 55.0% | |
| TGTGTATAGGGACAGGGTGG+TGG | - | chr3.1:84885452-84885471 | MS.gene32637:CDS | 55.0% | |
| ! | TGAACTGCCACCGCTTGTTG+TGG | + | chr3.1:84886543-84886562 | None:intergenic | 55.0% |
| !! | GGTGGTGGGGAAGAACCAAA+AGG | - | chr3.1:84885467-84885486 | MS.gene32637:CDS | 55.0% |
| GCAGCGACGAATCTACGGCA+GGG | + | chr3.1:84885256-84885275 | None:intergenic | 60.0% | |
| TCCCGGCAGCGACGAATCTA+CGG | + | chr3.1:84885261-84885280 | None:intergenic | 60.0% | |
| TGCCGTAGATTCGTCGCTGC+CGG | - | chr3.1:84885256-84885275 | MS.gene32637:CDS | 60.0% | |
| GCCGTAGATTCGTCGCTGCC+GGG | - | chr3.1:84885257-84885276 | MS.gene32637:CDS | 65.0% | |
| GGCAGCGACGAATCTACGGC+AGG | + | chr3.1:84885257-84885276 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84885205 | 84888283 | 84885205 | ID=MS.gene32637 |
| chr3.1 | mRNA | 84885205 | 84888283 | 84885205 | ID=MS.gene32637.t1;Parent=MS.gene32637 |
| chr3.1 | exon | 84888116 | 84888283 | 84888116 | ID=MS.gene32637.t1.exon1;Parent=MS.gene32637.t1 |
| chr3.1 | CDS | 84888116 | 84888283 | 84888116 | ID=cds.MS.gene32637.t1;Parent=MS.gene32637.t1 |
| chr3.1 | exon | 84887869 | 84888027 | 84887869 | ID=MS.gene32637.t1.exon2;Parent=MS.gene32637.t1 |
| chr3.1 | CDS | 84887869 | 84888027 | 84887869 | ID=cds.MS.gene32637.t1;Parent=MS.gene32637.t1 |
| chr3.1 | exon | 84886776 | 84887174 | 84886776 | ID=MS.gene32637.t1.exon3;Parent=MS.gene32637.t1 |
| chr3.1 | CDS | 84886776 | 84887174 | 84886776 | ID=cds.MS.gene32637.t1;Parent=MS.gene32637.t1 |
| chr3.1 | exon | 84885205 | 84886158 | 84885205 | ID=MS.gene32637.t1.exon4;Parent=MS.gene32637.t1 |
| chr3.1 | CDS | 84885205 | 84886158 | 84885205 | ID=cds.MS.gene32637.t1;Parent=MS.gene32637.t1 |
| Gene Sequence |
| Protein sequence |
