AlfalfaGEDB | MS.gene32637

M. sativa cultivar XinJiangDaYe / MS.gene32637

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32637.t1	XP_003603391.1	91.7	563	35	5	1	559	65	619	1.30E-282	981.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32637.t1	G7JB14	91.7	563	35	5	1	559	65	619	9.1e-283	981.9

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049281	MS.gene32637	0.821163	4.67E-53	-1.69E-46
MS.gene050363	MS.gene32637	0.817292	3.56E-52	-1.69E-46
MS.gene055550	MS.gene32637	0.803661	3.13E-49	-1.69E-46
MS.gene058628	MS.gene32637	0.814157	1.78E-51	-1.69E-46
MS.gene058629	MS.gene32637	0.822919	1.83E-53	-1.69E-46
MS.gene058630	MS.gene32637	0.815601	8.50E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32637.t1	MTR_3g107090	91.119	563	38	5	1	559	65	619	0.0	954
MS.gene32637.t1	MTR_1g056180	50.311	322	116	5	260	543	419	734	1.51e-101	323
MS.gene32637.t1	MTR_7g106540	48.882	313	122	7	260	541	211	516	7.33e-89	284
MS.gene32637.t1	MTR_7g106540	48.276	319	127	7	260	547	408	719	6.95e-87	284

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32637.t1	AT2G25460	37.770	556	257	17	1	536	52	538	8.39e-99	310
MS.gene32637.t1	AT3G11760	51.389	288	123	4	260	539	417	695	1.24e-95	306
MS.gene32637.t1	AT5G04860	46.307	352	150	8	221	541	236	579	3.50e-91	293
MS.gene32637.t1	AT5G04860	46.023	352	151	8	221	541	387	730	1.87e-89	292
MS.gene32637.t1	AT2G25460	34.625	413	205	14	2	395	53	419	2.31e-53	187
MS.gene32637.t1	AT2G10560	42.562	242	106	7	333	549	1	234	7.17e-53	181

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Find 110 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAACTCTTGACTCTG+TGG	0.625814	3.1:+84886890	None:intergenic
AAACACGGGACTATAGAAAA+AGG	0.282626	3.1:-84887068	MS.gene32637:CDS
AAACCTGTGTATGATTTCTG+AGG	0.630083	3.1:+84885770	None:intergenic
AAAGGTAAAATGGTGGTGGT+CGG	0.616409	3.1:-84887981	MS.gene32637:CDS
AAAGTAACTCTTGACTCTGT+GGG	0.490195	3.1:+84886891	None:intergenic
AACAACTAAAGGTCTCAAAT+TGG	0.378951	3.1:+84885796	None:intergenic
AACAATGTGAAGTTTGATGA+AGG	0.564539	3.1:-84887017	MS.gene32637:CDS
AACATCCATATGAGTCAGAT+GGG	0.577022	3.1:-84886986	MS.gene32637:CDS
AACGAATCCACAACAAGCGG+TGG	0.661870	3.1:-84886933	MS.gene32637:CDS
AAGAATGGAGCGTACCAAAA+GGG	0.552626	3.1:+84887854	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTCTATCAAAGATGCAT+TGG	-	chr3.1:84886987-84887006	MS.gene32637:CDS	30.0%
AACAACTAAAGGTCTCAAAT+TGG	+	chr3.1:84887673-84887692	None:intergenic	30.0%
AACAATGTGAAGTTTGATGA+AGG	-	chr3.1:84886449-84886468	MS.gene32637:intron	30.0%
AAGTCTATCAAAGATGCATT+GGG	-	chr3.1:84886988-84887007	MS.gene32637:CDS	30.0%
AAGTGCATGTTAGAAATTGA+TGG	-	chr3.1:84887291-84887310	MS.gene32637:intron	30.0%
ACAAATTATTGTATGGCTTG+AGG	-	chr3.1:84887041-84887060	MS.gene32637:CDS	30.0%
ATAAGACATTAAATGTGACG+TGG	+	chr3.1:84885351-84885370	None:intergenic	30.0%
ATATCAATAGAAGGTTCAAG+GGG	-	chr3.1:84886627-84886646	MS.gene32637:intron	30.0%
ATCAATTGTTTGCAAAAGCA+AGG	-	chr3.1:84886222-84886241	MS.gene32637:intron	30.0%
ATGATTCATGTGTGATGTAT+GGG	-	chr3.1:84887970-84887989	MS.gene32637:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	84885205	84888283	84885205	ID=MS.gene32637
chr3.1	mRNA	84885205	84888283	84885205	ID=MS.gene32637.t1;Parent=MS.gene32637
chr3.1	exon	84888116	84888283	84888116	ID=MS.gene32637.t1.exon1;Parent=MS.gene32637.t1
chr3.1	CDS	84888116	84888283	84888116	ID=cds.MS.gene32637.t1;Parent=MS.gene32637.t1
chr3.1	exon	84887869	84888027	84887869	ID=MS.gene32637.t1.exon2;Parent=MS.gene32637.t1
chr3.1	CDS	84887869	84888027	84887869	ID=cds.MS.gene32637.t1;Parent=MS.gene32637.t1
chr3.1	exon	84886776	84887174	84886776	ID=MS.gene32637.t1.exon3;Parent=MS.gene32637.t1
chr3.1	CDS	84886776	84887174	84886776	ID=cds.MS.gene32637.t1;Parent=MS.gene32637.t1
chr3.1	exon	84885205	84886158	84885205	ID=MS.gene32637.t1.exon4;Parent=MS.gene32637.t1
chr3.1	CDS	84885205	84886158	84885205	ID=cds.MS.gene32637.t1;Parent=MS.gene32637.t1

Gene Sequence

>MS.gene32637

ATGATTCCCTTTCATCGTACCTTAAAACCACCCTGCAGTCATATCACTCCCTGCCGTAGATTCGTCGCTGCCGGGAAAACTCCTTCTCACGTTTGGGACAATCATGACCTCTGTGTCTTCAACCTTGGACTCAAACATGTCTGCCACGTCACATTTAATGTCTTATATGTAAGATAGGAACATCTTGTTCTGTTTCTAACTTCATTTTTCATTAATATTTTGTTTATTTAGTTGATGTGTTACTATGTGTGTATAGGGACAGGGTGGTGGGGAAGAACCAAAAGGTAAAATGGTGGTGGTCGGAAAAGTTTGTATGACTCTAGCGATGGAGGAGATGAAGACCGAATCCAATGTTCAAAGGAAGCTTCCTATACGGTTGAAGGTCAATGGATTAATCATCGAAGCTACCCTTTTGGTACGCTCCATTCTTTTCTTCATTACTATAATTAATTATGTAATTTTAATTGCTTTCTCATTTATTAATTGGTCAAACCCATTTCACAAGCTCACTTCACGCACCAAAAATAGAAGGCAATACCTCTATTACACATGCCATGTTTCGTACTAAAATATATTGTTGTTGTATGCTATATGAATGAATTGATTAATTACATGGTTCATAAAACACCTTCATATCCATCTTAAAAATCATGGTTGAGCCTAACACTACCTCACAAAAACGACTTGTGAGGTAAGAATTACCTCCACTTATAAATACACCCCTTCACGACCAACATTATTCTGCTTGATTTATGAACATAAATAATAGGTGGTCTGATAGCGGAAACCCGATAACAGATGACTAACAAATCTTAAGATTTTCCATATATTTATCAGATCAATGTTAGAAAGACTTGTCTTTTGTTTTTCTTTTTAACAATAACATGAATAATTGTAGCTTAAATTCTTAGCACAACCACTAAGATTTGTGTAGTTTTAAGAGATTTGAGTAGTTGCATTAGTGATTATATCTTAAATTATTAATGAAATCATATTGACTCTTTTTATACACCAAAAATCAATTGTTTGCAAAAGCAAGGTGGAAACCAACACCCGTTAATTAATTAAATAATTAATTTTTAACGAAGGTGAGTAATACTTTATTACAGGTTTGTCTAAGGTTATTGAAGCACAGGAATAATTCTGATGATGACTTAGCAATAACCTTTGAAAACACGGTAAAGTCAGATAAGAAACACGGGACTATAGAAAAAGGGAAGTATTTGACATGCTTGACAAAGAAAAACAATGTGAAGTTTGATGAAGGTGATCAACAACATCCATATGAGTCAGATGGGTCCCCTGTGTTTGACTCTGATGAGTCATCGAACGAATCCACAACAAGCGGTGGCAGTTCAAGTAGCAATAGCCCCACAGAGTCAAGAGTTACTTTTCCAAGTTCAGGGACAAAGACAAGTTTGGATATCAATAGAAGGTTCAAGGGGTGGGACTTTAAGACAAGCACCGCTCAATTAGAAACTTCTACAATCCATCATACTCCTTTCACGGTATGTCAATTCTAATTCAACACTATATATATATATACTCTAATGACTGTACATTTGTACCCTACTTTGTTTCTTTGTAACTAAGTGTAATTGTTCAACTAGTTTTAACTAAGTGCTATTAGTCCTTTGTCAAAAAAGGCTATTAGTACTTCTTTTGTCCTTTTTTTGAAGAAAACTATTTGTCCTTGAATATTGAATTTTTTAAATAAATTTTTAACTTTGTTAATTATTTCTTTATCATTAGCGGGAAGCAATTCAATTTTAATATTGTATCAAAGTCTATCAAAGATGCATTGGGTAATTCATTATGAATTACTCAAGTCGCGCTACAAATTATTGTATGGCTTGAGGGAGTGTGTTACTAGTCTTACATTAGATGAGATAATGTCTAAACATGAGTTCATAAATAAGGATAGTTTATTTTGAAGAAGATAGTTATCACTTTAAAAGTTAATTTTGTAAATGTTAAGTTAGACATAAGCAAAATTTTAAAAGAAAATATCAATTACTAACCAATTTAATAATATTACTATTTTTTTTTAATTTTCTTGATTTAGTTTAGGGGGTCTTAAAAAAAGAAGTGCATGTTAGAAATTGATGGTCCTCTCATTTTGCAGAAATCAGATGAACTTTCTCTAAGATCAAACCTTCAAGGAAATTCAAGTAAATGGGAAATGAAATATATTTTAAGCAGAGATGGCCAATCAAAGCTCAAAACTAACGTGTTTTTTGCTTCCTTTGATCAACGAAGTGAAAAGGCCTCTGGTGAGAGTGCATGCACAGTGTTAGTTGCACTAATATCTCACTGGCTCCATACAAATCAAGGTATACCAACAAGAACTCAATTTGACAACCTCATCACACAAGGTTCATCTGAATGGAGAAAATTGTGCAAAAATGATTACTACTCAAAACACTTTCCAGATAAACATTTTGATTTAGAGACAGTCATTGATGCCAATTTGAGACCTTTAGTTGTTCTGCCTCAGAAATCATACACAGGTTTTTTCTCCCCTGAGAAGTTTCATTGCTTAGAAGGAGCTATGTCTTTTGATGAAATATGGAATGAGATAAACAACAACAACAACAACAACAACAACAACAACAAGGTGGTTGATTTTGAACCAAGAATTTACATAGTTAGTTGGAATGATCATTTCTTTATTTTGAAGGTAGAGGTTGATGCTTACTATATCATTGATTCATTGGGTGAGAGACTTTTTGAAGGGTGTCAAAGGGCATTTGTGTTGAAGTTTGATGATTCATGTGTGATGTATGGGAAAGTAAATAAAGATGAAGAAGTTAATAAGGATGGGGGTGCAAAGAGTAGTTCAAGAGGTGACGAAAGTTTTGAGATAGTTTGTCGTGGAAAAGAGTGTTGTAAAGAGTTTATCAAAAGTTTTCTTGCTGCAATATCAGTTAGACAACTTGAGAAAGAGGAGAAGAAATGGAGTGTTTCAAATCCTTATCTTCACCGGCAATTGCAGATTGATTTTCATTTTAGTTCTCCTTTATCCTCTTCCACATCTTCTATGTTGTATTTCTTAACAAATGAACATCGAGATGCCTAA

Protein sequence

>MS.gene32637.t1

MIPFHRTLKPPCSHITPCRRFVAAGKTPSHVWDNHDLCVFNLGLKHVCHVTFNVLYGQGGGEEPKGKMVVVGKVCMTLAMEEMKTESNVQRKLPIRLKVNGLIIEATLLVCLRLLKHRNNSDDDLAITFENTVKSDKKHGTIEKGKYLTCLTKKNNVKFDEGDQQHPYESDGSPVFDSDESSNESTTSGGSSSSNSPTESRVTFPSSGTKTSLDINRRFKGWDFKTSTAQLETSTIHHTPFTKSDELSLRSNLQGNSSKWEMKYILSRDGQSKLKTNVFFASFDQRSEKASGESACTVLVALISHWLHTNQGIPTRTQFDNLITQGSSEWRKLCKNDYYSKHFPDKHFDLETVIDANLRPLVVLPQKSYTGFFSPEKFHCLEGAMSFDEIWNEINNNNNNNNNNNKVVDFEPRIYIVSWNDHFFILKVEVDAYYIIDSLGERLFEGCQRAFVLKFDDSCVMYGKVNKDEEVNKDGGAKSSSRGDESFEIVCRGKECCKEFIKSFLAAISVRQLEKEEKKWSVSNPYLHRQLQIDFHFSSPLSSSTSSMLYFLTNEHRDA