AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058628


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058628.t1 MTR_3g007240 97.700 913 21 0 1 913 227 1139 0.0 1858
MS.gene058628.t1 MTR_8g044210 78.664 928 181 2 3 913 177 1104 0.0 1506
MS.gene058628.t1 MTR_3g007240 96.143 700 26 1 1 699 227 926 0.0 1377
MS.gene058628.t1 MTR_7g073480 57.025 968 360 7 1 913 248 1214 0.0 1114
MS.gene058628.t1 MTR_5g037210 36.726 953 542 17 1 907 127 1064 0.0 613
MS.gene058628.t1 MTR_4g112430 36.656 963 536 14 3 907 147 1093 0.0 608
MS.gene058628.t1 MTR_2g099690 35.663 973 539 13 3 903 149 1106 0.0 603
MS.gene058628.t1 MTR_8g069920 36.013 958 553 14 3 908 158 1107 0.0 588
MS.gene058628.t1 MTR_6g006910 36.902 962 533 19 5 903 148 1098 0.0 583
MS.gene058628.t1 MTR_3g037330 36.737 950 547 14 4 908 76 1016 0.0 575
MS.gene058628.t1 MTR_3g037330 36.737 950 547 14 4 908 146 1086 0.0 574
MS.gene058628.t1 MTR_0021s0360 35.729 960 553 15 4 912 143 1089 0.0 556
MS.gene058628.t1 MTR_2g090610 33.770 915 529 19 12 908 117 972 1.68e-154 483
MS.gene058628.t1 MTR_8g018290 36.794 761 408 14 217 910 14 768 1.51e-152 472
MS.gene058628.t1 MTR_2g090610 34.247 876 505 18 12 869 117 939 5.40e-152 472
MS.gene058628.t1 MTR_8g018290 36.328 768 409 13 217 910 14 775 4.55e-151 468
MS.gene058628.t1 MTR_2g099690 36.658 772 409 12 3 709 149 905 3.94e-149 464
MS.gene058628.t1 MTR_2g099690 34.871 737 400 12 3 674 149 870 2.93e-130 413
MS.gene058628.t1 MTR_8g062150 32.823 457 266 9 1 434 147 585 1.03e-70 245
MS.gene058628.t1 MTR_8g005730 36.471 170 85 4 377 546 17 163 7.94e-28 111
MS.gene058628.t1 MTR_8g005740 28.745 247 78 4 440 646 1 189 6.48e-19 86.3
MS.gene058628.t1 MTR_8g027160 25.520 529 286 18 265 760 352 805 1.30e-17 88.6
MS.gene058628.t1 MTR_4g008650 23.429 525 262 15 195 708 380 775 1.47e-17 88.6
MS.gene058628.t1 MTR_8g027160 25.520 529 286 18 265 760 352 805 2.39e-17 87.8
MS.gene058628.t1 MTR_4g008650 23.429 525 262 16 195 708 380 775 2.90e-17 87.4
MS.gene058628.t1 MTR_8g090125 22.332 506 259 13 214 708 351 733 5.63e-17 86.7
MS.gene058628.t1 MTR_8g027160 25.630 476 249 16 265 708 352 754 2.19e-16 84.3
MS.gene058628.t1 MTR_8g027160 25.630 476 249 16 265 708 352 754 2.23e-16 84.3
MS.gene058628.t1 MTR_2g056040 46.667 75 39 1 526 599 1 75 1.25e-14 70.5
MS.gene058628.t1 MTR_4g043690 23.772 509 246 18 217 708 399 782 1.58e-14 78.6
MS.gene058628.t1 MTR_0005s0140 23.772 509 246 18 217 708 314 697 2.10e-14 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058628.t1 AT5G04930 71.116 914 258 5 3 913 175 1085 0.0 1383
MS.gene058628.t1 AT3G27870 37.253 961 533 14 4 908 147 1093 0.0 621
MS.gene058628.t1 AT1G59820 36.565 949 522 20 1 896 139 1060 0.0 608
MS.gene058628.t1 AT1G17500 36.477 965 538 18 2 908 148 1095 0.0 602
MS.gene058628.t1 AT1G17500 36.477 965 538 18 2 908 148 1095 0.0 602
MS.gene058628.t1 AT1G54280 36.290 981 534 15 4 908 151 1116 0.0 602
MS.gene058628.t1 AT1G54280 36.290 981 534 15 4 908 151 1116 0.0 602
MS.gene058628.t1 AT1G54280 36.290 981 534 15 4 908 151 1116 0.0 602
MS.gene058628.t1 AT1G68710 36.677 957 547 15 3 908 150 1098 0.0 602
MS.gene058628.t1 AT1G68710 36.677 957 547 15 3 908 150 1098 0.0 602
MS.gene058628.t1 AT3G13900 36.290 981 535 20 3 908 149 1114 0.0 600
MS.gene058628.t1 AT3G25610 37.370 958 534 16 3 907 148 1092 0.0 594
MS.gene058628.t1 AT1G26130 36.667 960 539 14 3 908 150 1094 0.0 593
MS.gene058628.t1 AT1G26130 36.754 955 546 14 3 908 150 1095 0.0 593
MS.gene058628.t1 AT1G26130 36.754 955 546 14 3 908 150 1095 0.0 593
MS.gene058628.t1 AT1G26130 36.754 955 546 14 3 908 150 1095 0.0 593
MS.gene058628.t1 AT1G68710 35.707 983 547 16 3 908 150 1124 0.0 587
MS.gene058628.t1 AT1G72700 35.312 977 553 16 2 913 148 1110 0.0 584
MS.gene058628.t1 AT1G72700 35.312 977 553 16 2 913 148 1110 0.0 584
MS.gene058628.t1 AT1G72700 35.312 977 553 16 2 913 148 1110 0.0 584
MS.gene058628.t1 AT3G27870 38.759 854 460 13 4 808 147 986 0.0 581
MS.gene058628.t1 AT1G13210 35.796 961 548 16 3 907 146 1093 0.0 575
MS.gene058628.t1 AT3G27870 36.681 916 510 14 49 908 1 902 0.0 570
MS.gene058628.t1 AT3G13900 38.471 824 418 21 3 753 149 956 4.40e-170 520
MS.gene058628.t1 AT5G44240 33.042 914 537 19 12 908 117 972 1.60e-150 473
MS.gene058628.t1 AT3G13900 36.765 816 420 22 3 749 149 937 1.97e-150 470
MS.gene058628.t1 AT5G44240 33.042 914 537 19 12 908 149 1004 2.42e-150 473
MS.gene058628.t1 AT4G00900 24.566 346 195 11 432 760 505 801 1.73e-15 82.0
MS.gene058628.t1 AT4G00900 24.566 346 195 11 432 760 505 801 1.73e-15 82.0
MS.gene058628.t1 AT1G07810 23.223 788 440 34 1 760 155 805 4.35e-15 80.5
MS.gene058628.t1 AT1G07670 23.253 787 441 34 1 760 155 805 1.95e-14 78.6
MS.gene058628.t1 AT1G07670 23.253 787 441 34 1 760 155 805 1.95e-14 78.6

Find 172 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTGTTCTTGTCCTATTT+TGG 0.168882 3.1:+2654401 MS.gene058628:CDS
GACTCTTGCTGTGGTTATTT+TGG 0.180648 3.1:+2655195 MS.gene058628:CDS
GAAAGCAATGTTTCCATATT+AGG 0.180689 3.1:+2653443 MS.gene058628:CDS
TATTGCTTTGTACATTTCTA+TGG 0.204359 3.1:+2651865 MS.gene058628:CDS
GGTTTAAGAACACTTGTTAT+TGG 0.229803 3.1:+2653308 MS.gene058628:CDS
ATATGGATTTATGGCGAATA+TGG 0.231340 3.1:+2651439 MS.gene058628:CDS
TAGGAATATATATGGATTTA+TGG 0.232364 3.1:+2651430 MS.gene058628:CDS
TGAATCTGTTGCCTTATTAC+AGG 0.241990 3.1:+2651732 MS.gene058628:CDS
TTGAATATTAATGAAGATTT+GGG 0.249431 3.1:+2651977 MS.gene058628:CDS
CTAACTTTCACCTTCATCTT+TGG 0.249501 3.1:-2652600 None:intergenic
TTTGAATATTAATGAAGATT+TGG 0.266623 3.1:+2651976 MS.gene058628:CDS
GGCAAAGCATGGTTGTATTT+TGG 0.266627 3.1:+2655113 MS.gene058628:CDS
GCGGCAAGCACTGCGGTATT+TGG 0.286706 3.1:+2653383 MS.gene058628:CDS
GGCCTCCACTCTTTGCATAT+TGG 0.293028 3.1:+2655134 MS.gene058628:CDS
GAATTGTGACTTACCAAAAT+AGG 0.304086 3.1:-2654414 None:intergenic
AAAAGAATGTCGGTTATATT+AGG 0.305067 3.1:+2653155 MS.gene058628:CDS
GAGCAGCAGGGATTAAAGTT+TGG 0.310183 3.1:+2653525 MS.gene058628:CDS
TACTTATAGTCTTCAACTTC+CGG 0.312037 3.1:-2651773 None:intergenic
GATAGCAGATGCTCCTAATA+TGG 0.312880 3.1:-2653456 None:intergenic
AAATCAAGTTTCCTGTAATA+AGG 0.322804 3.1:-2651743 None:intergenic
GGTGACTCATGCTGTCATTT+GGG 0.323672 3.1:+2655258 MS.gene058628:CDS
TTGAAAATGTGGAAGGAAAA+AGG 0.324840 3.1:+2652655 MS.gene058628:CDS
TACCTCAACTTCCTGGTTAC+TGG 0.327029 3.1:+2655326 MS.gene058628:CDS
TATAAAGTTGAGGATACTTT+AGG 0.331612 3.1:-2655024 None:intergenic
AAAGCTATGCTTAACAATTC+AGG 0.338099 3.1:+2651575 MS.gene058628:CDS
AGCAGCAGGGATTAAAGTTT+GGG 0.341999 3.1:+2653526 MS.gene058628:CDS
CAAGAAACAGCTATATCTAT+TGG 0.342631 3.1:+2653566 MS.gene058628:CDS
AAACCGAATAGGAATATATA+TGG 0.343990 3.1:+2651422 MS.gene058628:CDS
CAGATAGCTTTGATTATTGA+TGG 0.344102 3.1:+2653716 MS.gene058628:CDS
AATCCATATATATTCCTATT+CGG 0.351031 3.1:-2651425 None:intergenic
GCAGTTTCATTGAGAAGAAA+TGG 0.361857 3.1:+2651189 MS.gene058628:CDS
GCACTACCAACTATTATTGT+TGG 0.369353 3.1:+2654968 MS.gene058628:CDS
GGGTGACTCATGCTGTCATT+TGG 0.373060 3.1:+2655257 MS.gene058628:CDS
TCTTATTGATACATGGTCAT+TGG 0.373897 3.1:+2654326 MS.gene058628:CDS
CATTGCAGGTTCAATGTCTT+GGG 0.373912 3.1:+2653107 MS.gene058628:intron
TAGCAAGCATAGGAGATCTT+TGG 0.379581 3.1:+2655173 MS.gene058628:CDS
GAAGACTAGGTATGCGAAAC+AGG 0.384864 3.1:+2651349 MS.gene058628:CDS
TGGCTATGGATGTTATTAGA+TGG 0.391477 3.1:+2655230 MS.gene058628:CDS
GATGCTATACCTCAACTTCC+TGG 0.395483 3.1:+2655319 MS.gene058628:CDS
CTTCACTCTTACTCTTCACT+TGG 0.399861 3.1:+2653287 MS.gene058628:CDS
TACGCCAACGCTTGTTCATC+AGG 0.402754 3.1:-2652783 None:intergenic
GTTGAAGACTATAAGTACTA+TGG 0.403402 3.1:+2651779 MS.gene058628:CDS
GTGCAAACTATTAATCTTGA+TGG 0.406142 3.1:+2651314 MS.gene058628:CDS
AATAGGCACAATAGTATTGC+AGG 0.407285 3.1:-2652706 None:intergenic
ATAGAAATGTACAAAGCAAT+AGG 0.408488 3.1:-2651863 None:intergenic
CTTGCCAATTGCAAAAGCTC+TGG 0.412829 3.1:-2652624 None:intergenic
ATTGAGTCGCTGAGAGCAGC+AGG 0.413874 3.1:+2653512 MS.gene058628:CDS
CGCAGTGCTTGCCGCTTCAT+AGG 0.416409 3.1:-2653375 None:intergenic
TGGATGTTATTAGATGGTAT+TGG 0.416696 3.1:+2655236 MS.gene058628:CDS
GGATGTTATTAGATGGTATT+GGG 0.420154 3.1:+2655237 MS.gene058628:CDS
GGAGCTTGTTCGTGTTGGCC+AGG 0.428817 3.1:+2651886 MS.gene058628:CDS
ACATTGCAGGTTCAATGTCT+TGG 0.431390 3.1:+2653106 MS.gene058628:intron
ATCGTCTTCGATCATGAAAT+AGG 0.432489 3.1:-2651909 None:intergenic
AAGGTTCAACCGAGGTATAC+TGG 0.433990 3.1:+2651383 MS.gene058628:CDS
TCAGGTGTGTCAACAACAAT+AGG 0.437232 3.1:-2652723 None:intergenic
GCGTATGCCGCTGCTGCCTA+TGG 0.452747 3.1:+2652801 MS.gene058628:CDS
CACATAGTCATTGATATTCA+TGG 0.453838 3.1:+2652852 MS.gene058628:CDS
TCGAGTGGCTCCACTGCAAA+AGG 0.458399 3.1:+2653990 MS.gene058628:CDS
CTCAGCGACTCAATTGCTTC+CGG 0.460307 3.1:-2653503 None:intergenic
GGTTTGGTTGAAGCGTCATA+AGG 0.461760 3.1:+2651703 MS.gene058628:CDS
CATCTGTTTGTGCTGCGGTT+TGG 0.463988 3.1:+2651687 MS.gene058628:CDS
CAAGCACTGCGGTATTTGGT+CGG 0.464775 3.1:+2653387 MS.gene058628:CDS
AGAGGGTAGGCAAGCTGTAA+TGG 0.465745 3.1:+2654261 MS.gene058628:CDS
TCAACCAACATTGTGCTTAG+AGG 0.467223 3.1:+2651491 MS.gene058628:CDS
GGTCAATTTACATTTGGCTA+TGG 0.472950 3.1:+2655216 MS.gene058628:CDS
ATGCTTATTGAGCGAACCTC+CGG 0.474232 3.1:+2652828 MS.gene058628:CDS
AACAGCTTGACATCGGGATC+AGG 0.478945 3.1:-2652741 None:intergenic
GTGGCTCCACTGCAAAAGGC+TGG 0.484770 3.1:+2653994 MS.gene058628:CDS
CATTGGAATTACCAAAGGCT+TGG 0.486057 3.1:+2654343 MS.gene058628:CDS
GTATCATGTAACCAAGCCTT+TGG 0.486209 3.1:-2654354 None:intergenic
TATCCTCAACTTTATAGTGC+TGG 0.490459 3.1:+2655031 MS.gene058628:CDS
ACCTAGTTCATTCTCCATGC+CGG 0.491233 3.1:-2652104 None:intergenic
GTTCCTCTCTTATTGATACA+TGG 0.491866 3.1:+2654319 MS.gene058628:CDS
TATGTGTTCTCAGATAAAAC+TGG 0.493604 3.1:+2652010 MS.gene058628:CDS
GGTAAACTATAACTGACATA+AGG 0.496795 3.1:-2651829 None:intergenic
ATTAGGCTACCCTGACAGTT+CGG 0.498350 3.1:+2653172 MS.gene058628:CDS
TAAGCATAGCTTTAGTTTCG+CGG 0.498904 3.1:-2651565 None:intergenic
TAAGTACTATGGATGGGGAT+TGG 0.499992 3.1:+2651790 MS.gene058628:CDS
AAGCACTGCGGTATTTGGTC+GGG 0.500000 3.1:+2653388 MS.gene058628:CDS
GTGAGCTTAAGAATACTAGT+TGG 0.504413 3.1:+2651516 MS.gene058628:CDS
CAACAACTGCAATAAATGAA+TGG 0.507660 3.1:+2654915 MS.gene058628:CDS
TACACTTACTGAAAATAAGA+TGG 0.509982 3.1:+2652033 MS.gene058628:CDS
TATGTCAGTTATAGTTTACC+AGG 0.510492 3.1:+2651832 MS.gene058628:CDS
TGATGTATCAATGATTCAAA+TGG 0.510962 3.1:+2654210 MS.gene058628:CDS
AGAATTCCAACAATAATAGT+TGG 0.512924 3.1:-2654974 None:intergenic
AAGAATACTAGTTGGGCGCT+TGG 0.513157 3.1:+2651524 MS.gene058628:CDS
TAACAATGGTTGATACTTTG+TGG 0.514157 3.1:+2655092 MS.gene058628:CDS
TTATCAACTAGTGATCCAAC+TGG 0.515769 3.1:+2651281 MS.gene058628:CDS
GATCTTAAAACCAAAGATGA+AGG 0.518025 3.1:+2652590 MS.gene058628:CDS
TAATCTAACAGCTTGACATC+GGG 0.523706 3.1:-2652747 None:intergenic
AAGACTATAAGTACTATGGA+TGG 0.525277 3.1:+2651783 MS.gene058628:CDS
CACTGTCGAGAATGTGTACA+AGG 0.530496 3.1:-2653745 None:intergenic
TGAGCTTAAGAATACTAGTT+GGG 0.531877 3.1:+2651517 MS.gene058628:CDS
TGCACATATGCAACACCAGT+TGG 0.534022 3.1:-2651296 None:intergenic
TTAAGTGTGAGAAACCGAAT+AGG 0.534933 3.1:+2651411 MS.gene058628:CDS
TCTATGGAGCTTGTTCGTGT+TGG 0.537946 3.1:+2651881 MS.gene058628:CDS
GATGTTGGAGTTGGTATAAG+TGG 0.542521 3.1:+2654235 MS.gene058628:CDS
TCTGCACTGAAACTTCGTAT+TGG 0.543063 3.1:-2651951 None:intergenic
CTCAATAAGCATAAAACCAT+AGG 0.543111 3.1:-2652817 None:intergenic
CTTGGTGTCGCGGTCTATTG+TGG 0.544779 3.1:+2651542 MS.gene058628:CDS
GACTATAAGTACTATGGATG+GGG 0.549175 3.1:+2651785 MS.gene058628:CDS
CAGATGTCCGCTTCTTCACA+AGG 0.550144 3.1:-2654026 None:intergenic
GTGAGTCTAATTTGAAGACT+AGG 0.551484 3.1:+2651336 MS.gene058628:CDS
GCACTTCAGAGTTTGAAGAA+TGG 0.552085 3.1:+2653345 MS.gene058628:CDS
AAATGGAAGGATATTCGAGT+TGG 0.553978 3.1:+2651206 MS.gene058628:CDS
GTAATCTAACAGCTTGACAT+CGG 0.559765 3.1:-2652748 None:intergenic
TCGGTAAAACTCTTTGTCAA+AGG 0.560056 3.1:+2653191 MS.gene058628:CDS
CAAATGGCTGATGTTGGAGT+TGG 0.562565 3.1:+2654226 MS.gene058628:CDS
TGTCGTTCTTTGTTGTCGAG+TGG 0.562870 3.1:+2653975 MS.gene058628:CDS
GAGCTCCATCGAAAAGAAGC+AGG 0.563941 3.1:+2651597 MS.gene058628:CDS
ATGATTCAAATGGCTGATGT+TGG 0.567389 3.1:+2654220 MS.gene058628:CDS
AGACTATAAGTACTATGGAT+GGG 0.568634 3.1:+2651784 MS.gene058628:CDS
TTGTTTCCCTTGTGAAGAAG+CGG 0.568943 3.1:+2654019 MS.gene058628:CDS
TAAACTTCAACAAGGTGTGC+CGG 0.569652 3.1:+2653484 MS.gene058628:CDS
CTTCGATCATGAAATAGGCC+TGG 0.570695 3.1:-2651904 None:intergenic
GTTGGTATAAGTGGACAAGA+GGG 0.570884 3.1:+2654244 MS.gene058628:CDS
AGATCTTTGGACTCTTGCTG+TGG 0.578876 3.1:+2655186 MS.gene058628:CDS
GTTCATCAGGCGATTCACCT+TGG 0.579840 3.1:-2652770 None:intergenic
TGGAAACATTGCTTTCAACA+TGG 0.580153 3.1:-2653436 None:intergenic
TACCAGTAACCAGGAAGTTG+AGG 0.582228 3.1:-2655328 None:intergenic
TTTGTCTATTACACTAAACA+TGG 0.584696 3.1:-2653225 None:intergenic
TGATACTTTGTGGCAAAGCA+TGG 0.585733 3.1:+2655102 MS.gene058628:CDS
GTGACTCATGCTGTCATTTG+GGG 0.586654 3.1:+2655259 MS.gene058628:CDS
TAGTTGGGCGCTTGGTGTCG+CGG 0.589231 3.1:+2651532 MS.gene058628:CDS
AATGGAGTTGAAAATGTGGA+AGG 0.590116 3.1:+2652648 MS.gene058628:CDS
CGACAGTGAACACGAAGAAG+AGG 0.590159 3.1:+2653760 MS.gene058628:CDS
AATATCAATGACTATGTGGC+CGG 0.590915 3.1:-2652847 None:intergenic
TCCATCGAAAAGAAGCAGGC+TGG 0.591320 3.1:+2651601 MS.gene058628:CDS
ATGACACTAGCCATCGGAGA+TGG 0.592031 3.1:+2654051 MS.gene058628:CDS
ACTATTGATATAGCAAGCAT+AGG 0.593863 3.1:+2655163 MS.gene058628:CDS
TGTCCAGCACTATAAAGTTG+AGG 0.593916 3.1:-2655034 None:intergenic
TTTCATTGAGAAGAAATGGA+AGG 0.598082 3.1:+2651193 MS.gene058628:CDS
ATAGCTTTGATTATTGATGG+TGG 0.600389 3.1:+2653719 MS.gene058628:CDS
AGGTATGCGAAACAGGAGAC+AGG 0.600615 3.1:+2651356 MS.gene058628:CDS
ATGGTCATTGGAATTACCAA+AGG 0.603198 3.1:+2654338 MS.gene058628:CDS
CATAAAACCATAGGCAGCAG+CGG 0.605167 3.1:-2652808 None:intergenic
AGTTGGTATAAGTGGACAAG+AGG 0.609765 3.1:+2654243 MS.gene058628:CDS
GAAACAGGAGACAGGTTCAA+AGG 0.611978 3.1:+2651364 MS.gene058628:CDS
ACCGGCATGGAGAATGAACT+AGG 0.612046 3.1:+2652103 MS.gene058628:CDS
ACATCCTCTAAGCACAATGT+TGG 0.612946 3.1:-2651495 None:intergenic
TGAATATTAATGAAGATTTG+GGG 0.616519 3.1:+2651978 MS.gene058628:CDS
AATCACATCTGTTTGTGCTG+CGG 0.616535 3.1:+2651682 MS.gene058628:CDS
CTAGGTGAATACTCAGTGCA+AGG 0.616609 3.1:+2652121 MS.gene058628:CDS
ATCGCCTGATGAACAAGCGT+TGG 0.617081 3.1:+2652779 MS.gene058628:CDS
TTCCAATATGCAAAGAGTGG+AGG 0.618565 3.1:-2655136 None:intergenic
ATGGCGAATATGGAAATCGA+TGG 0.624834 3.1:+2651449 MS.gene058628:CDS
GATGGTAAGAAGTTATCACT+TGG 0.629993 3.1:+2651467 MS.gene058628:CDS
TTTCAATGTGCAAGCATACG+AGG 0.630431 3.1:+2652058 MS.gene058628:CDS
ATGGCATGCAGCCTATGAAG+CGG 0.630585 3.1:+2653364 MS.gene058628:CDS
GTATAAGTGGACAAGAGGGT+AGG 0.639872 3.1:+2654248 MS.gene058628:CDS
AAAGAAGCAGGCTGGAGACG+CGG 0.642983 3.1:+2651609 MS.gene058628:CDS
AATAGACAAATCACACAACA+TGG 0.644458 3.1:+2653238 MS.gene058628:CDS
AGAGTGAAGATGAGTTTCTG+TGG 0.644608 3.1:-2653273 None:intergenic
TGACCATGTATCAATAAGAG+AGG 0.644926 3.1:-2654322 None:intergenic
ATCAATGACTATGTGGCCGG+AGG 0.646233 3.1:-2652844 None:intergenic
CATGAATATCAATGACTATG+TGG 0.647298 3.1:-2652851 None:intergenic
AGACGATCGATTGTATGATG+AGG 0.647562 3.1:+2651925 MS.gene058628:CDS
GTGAATACATACCAGTAACC+AGG 0.651202 3.1:-2655337 None:intergenic
AAGCAATAGGAATCATGACC+TGG 0.654082 3.1:-2651850 None:intergenic
ACCAAAATAGGACAAGAACA+AGG 0.674548 3.1:-2654402 None:intergenic
AAGAAATGGAGTTGAAAATG+TGG 0.674807 3.1:+2652644 MS.gene058628:CDS
AGAACTCGTACCATCTCCGA+TGG 0.678340 3.1:-2654061 None:intergenic
GTCAAGCTGTTAGATTACCA+AGG 0.681261 3.1:+2652753 MS.gene058628:CDS
AGATGTCCGCTTCTTCACAA+GGG 0.683316 3.1:-2654025 None:intergenic
TTAATCAAACCAGTATACCT+CGG 0.685339 3.1:-2651392 None:intergenic
TCTGACATGACACTAGCCAT+CGG 0.686147 3.1:+2654045 MS.gene058628:CDS
TTGAGTCGCTGAGAGCAGCA+GGG 0.700401 3.1:+2653513 MS.gene058628:CDS
ATCGAAGATAAACTTCAACA+AGG 0.708153 3.1:+2653476 MS.gene058628:CDS
GATAACAAAACAATATCACA+AGG 0.711577 3.1:-2651263 None:intergenic
CTATGAAGCGGCAAGCACTG+CGG 0.713920 3.1:+2653376 MS.gene058628:CDS
GTAGATTATTGAGTACAATG+TGG 0.715499 3.1:-2654942 None:intergenic
CAGGTTCAAAGGTTCAACCG+AGG 0.752179 3.1:+2651375 MS.gene058628:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACTATGTTAAAATCTTT+AGG - chr3.1:2654839-2654858 None:intergenic 15.0%
!! TCACTAAAATTGTTTAAATT+CGG - chr3.1:2652274-2652293 None:intergenic 15.0%
!! TTGAATATTAATGAAGATTT+GGG + chr3.1:2651977-2651996 MS.gene058628:CDS 15.0%
!! TTTGAATATTAATGAAGATT+TGG + chr3.1:2651976-2651995 MS.gene058628:CDS 15.0%
!! AATCCATATATATTCCTATT+CGG - chr3.1:2651428-2651447 None:intergenic 20.0%
!! ATATGGTTAATGAACATATA+AGG - chr3.1:2652411-2652430 None:intergenic 20.0%
!! GACTGTCAATATATAATTAA+GGG + chr3.1:2654530-2654549 MS.gene058628:intron 20.0%
!! TAATGAAATCATCTTTAATG+TGG + chr3.1:2653037-2653056 MS.gene058628:intron 20.0%
!! TAATGATCGAAATAAGATAA+AGG + chr3.1:2652236-2652255 MS.gene058628:intron 20.0%
!! TAGGAATATATATGGATTTA+TGG + chr3.1:2651430-2651449 MS.gene058628:CDS 20.0%
!! TGAATATTAATGAAGATTTG+GGG + chr3.1:2651978-2651997 MS.gene058628:CDS 20.0%
!! TTAGTTTCATTATATCTTGT+TGG + chr3.1:2653783-2653802 MS.gene058628:intron 20.0%
!!! AGTTTTTTCGCTTTAATATT+CGG - chr3.1:2654156-2654175 None:intergenic 20.0%
!!! TATTTTGGTCAATTTACATT+TGG + chr3.1:2655210-2655229 MS.gene058628:CDS 20.0%
!!! TTTAGTGAAAACTTTTGAAA+CGG + chr3.1:2652286-2652305 MS.gene058628:intron 20.0%
! AAACCGAATAGGAATATATA+TGG + chr3.1:2651422-2651441 MS.gene058628:CDS 25.0%
! AAATCAAGTTTCCTGTAATA+AGG - chr3.1:2651746-2651765 None:intergenic 25.0%
! AGAACATACCTAAAAAACAA+AGG - chr3.1:2654878-2654897 None:intergenic 25.0%
! AGAATTCCAACAATAATAGT+TGG - chr3.1:2654977-2654996 None:intergenic 25.0%
! ATAGAAATGTACAAAGCAAT+AGG - chr3.1:2651866-2651885 None:intergenic 25.0%
! ATCTTGTTGGAATTATGTTT+AGG + chr3.1:2653796-2653815 MS.gene058628:intron 25.0%
! CTAGTAAAAAATGTACTGAA+AGG - chr3.1:2654115-2654134 None:intergenic 25.0%
! GAGAAAGATTCATTAGAATA+TGG - chr3.1:2653079-2653098 None:intergenic 25.0%
! GATAACAAAACAATATCACA+AGG - chr3.1:2651266-2651285 None:intergenic 25.0%
! GGACTGTCAATATATAATTA+AGG + chr3.1:2654529-2654548 MS.gene058628:intron 25.0%
! TACACTTACTGAAAATAAGA+TGG + chr3.1:2652033-2652052 MS.gene058628:CDS 25.0%
! TACGTTTAGTAGACTATTAA+CGG + chr3.1:2652336-2652355 MS.gene058628:intron 25.0%
! TATAAAGTTGAGGATACTTT+AGG - chr3.1:2655027-2655046 None:intergenic 25.0%
! TATTGCTTTGTACATTTCTA+TGG + chr3.1:2651865-2651884 MS.gene058628:CDS 25.0%
! TGATGTATCAATGATTCAAA+TGG + chr3.1:2654210-2654229 MS.gene058628:CDS 25.0%
! TTTGTCTATTACACTAAACA+TGG - chr3.1:2653228-2653247 None:intergenic 25.0%
!! AAAAGAATGTCGGTTATATT+AGG + chr3.1:2653155-2653174 MS.gene058628:CDS 25.0%
!! TGAGTACAATATCTGAAATT+GGG - chr3.1:2654764-2654783 None:intergenic 25.0%
!!! AACTTTTGAAACGGTTAAAA+CGG + chr3.1:2652295-2652314 MS.gene058628:intron 25.0%
!!! ATCAGGGTTTTATAGATAAT+TGG + chr3.1:2654508-2654527 MS.gene058628:intron 25.0%
!!! GAAACTGTTTTTGTTAACAA+TGG + chr3.1:2655078-2655097 MS.gene058628:CDS 25.0%
AAAGCTATGCTTAACAATTC+AGG + chr3.1:2651575-2651594 MS.gene058628:CDS 30.0%
AACAATACCAGATGCATTAA+AGG - chr3.1:2652217-2652236 None:intergenic 30.0%
AAGAAATGGAGTTGAAAATG+TGG + chr3.1:2652644-2652663 MS.gene058628:CDS 30.0%
AAGACTATAAGTACTATGGA+TGG + chr3.1:2651783-2651802 MS.gene058628:CDS 30.0%
AATAGACAAATCACACAACA+TGG + chr3.1:2653238-2653257 MS.gene058628:CDS 30.0%
AATTGCGATTATGGATAGAA+AGG - chr3.1:2652908-2652927 None:intergenic 30.0%
AGACTATAAGTACTATGGAT+GGG + chr3.1:2651784-2651803 MS.gene058628:CDS 30.0%
ATATGGATTTATGGCGAATA+TGG + chr3.1:2651439-2651458 MS.gene058628:CDS 30.0%
ATCGAAGATAAACTTCAACA+AGG + chr3.1:2653476-2653495 MS.gene058628:CDS 30.0%
CAACAACTGCAATAAATGAA+TGG + chr3.1:2654915-2654934 MS.gene058628:CDS 30.0%
CAAGAAACAGCTATATCTAT+TGG + chr3.1:2653566-2653585 MS.gene058628:CDS 30.0%
CACATAGTCATTGATATTCA+TGG + chr3.1:2652852-2652871 MS.gene058628:CDS 30.0%
CAGTGATAGAAAAAGAATGT+CGG + chr3.1:2653145-2653164 MS.gene058628:CDS 30.0%
CATGAATATCAATGACTATG+TGG - chr3.1:2652854-2652873 None:intergenic 30.0%
CTCAATAAGCATAAAACCAT+AGG - chr3.1:2652820-2652839 None:intergenic 30.0%
GAAAGCAATGTTTCCATATT+AGG + chr3.1:2653443-2653462 MS.gene058628:CDS 30.0%
GAATTGTGACTTACCAAAAT+AGG - chr3.1:2654417-2654436 None:intergenic 30.0%
GATCTTAAAACCAAAGATGA+AGG + chr3.1:2652590-2652609 MS.gene058628:CDS 30.0%
GGATGTTATTAGATGGTATT+GGG + chr3.1:2655237-2655256 MS.gene058628:CDS 30.0%
GGTAAACTATAACTGACATA+AGG - chr3.1:2651832-2651851 None:intergenic 30.0%
GTAGATTATTGAGTACAATG+TGG - chr3.1:2654945-2654964 None:intergenic 30.0%
GTGCAAACTATTAATCTTGA+TGG + chr3.1:2651314-2651333 MS.gene058628:CDS 30.0%
GTTGAAGACTATAAGTACTA+TGG + chr3.1:2651779-2651798 MS.gene058628:CDS 30.0%
TAATTTCTACTCTCAGTTGA+TGG + chr3.1:2652564-2652583 MS.gene058628:intron 30.0%
TACTTATAGTCTTCAACTTC+CGG - chr3.1:2651776-2651795 None:intergenic 30.0%
TATGTCAGTTATAGTTTACC+AGG + chr3.1:2651832-2651851 MS.gene058628:CDS 30.0%
TATGTGTTCTCAGATAAAAC+TGG + chr3.1:2652010-2652029 MS.gene058628:CDS 30.0%
TCTTATTGATACATGGTCAT+TGG + chr3.1:2654326-2654345 MS.gene058628:CDS 30.0%
TGAGCTTAAGAATACTAGTT+GGG + chr3.1:2651517-2651536 MS.gene058628:CDS 30.0%
TGGATGTTATTAGATGGTAT+TGG + chr3.1:2655236-2655255 MS.gene058628:CDS 30.0%
TTAATCAAACCAGTATACCT+CGG - chr3.1:2651395-2651414 None:intergenic 30.0%
TTAATGCAGCTTAAATAGGT+GGG - chr3.1:2652448-2652467 None:intergenic 30.0%
TTGAAAATGTGGAAGGAAAA+AGG + chr3.1:2652655-2652674 MS.gene058628:CDS 30.0%
TTTCATTGAGAAGAAATGGA+AGG + chr3.1:2651193-2651212 MS.gene058628:CDS 30.0%
TTTCTCATTATGAACATTGC+AGG + chr3.1:2653093-2653112 MS.gene058628:intron 30.0%
! ATTGCAGTGTATGCATTTTT+AGG + chr3.1:2652925-2652944 MS.gene058628:intron 30.0%
! CAAAAACAGTTTCTTGTTGT+AGG - chr3.1:2655071-2655090 None:intergenic 30.0%
! GAGTACAATATCTGAAATTG+GGG - chr3.1:2654763-2654782 None:intergenic 30.0%
! GTGAGTACAATATCTGAAAT+TGG - chr3.1:2654765-2654784 None:intergenic 30.0%
! TAACAATGGTTGATACTTTG+TGG + chr3.1:2655092-2655111 MS.gene058628:CDS 30.0%
! TTGCAGTGTATGCATTTTTA+GGG + chr3.1:2652926-2652945 MS.gene058628:intron 30.0%
!! ATAGCTTTGATTATTGATGG+TGG + chr3.1:2653719-2653738 MS.gene058628:CDS 30.0%
!! ATTAAAGTTTGGGTTTTGAC+TGG + chr3.1:2653536-2653555 MS.gene058628:CDS 30.0%
!! CAGATAGCTTTGATTATTGA+TGG + chr3.1:2653716-2653735 MS.gene058628:CDS 30.0%
!! GAAACTTGATTTTTCAAAGC+CGG + chr3.1:2651754-2651773 MS.gene058628:CDS 30.0%
!! GGTTTAAGAACACTTGTTAT+TGG + chr3.1:2653308-2653327 MS.gene058628:CDS 30.0%
AAATGGAAGGATATTCGAGT+TGG + chr3.1:2651206-2651225 MS.gene058628:CDS 35.0%
AACATTGCCTTTAATGCATC+TGG + chr3.1:2652207-2652226 MS.gene058628:intron 35.0%
AATAGGCACAATAGTATTGC+AGG - chr3.1:2652709-2652728 None:intergenic 35.0%
AATATCAATGACTATGTGGC+CGG - chr3.1:2652850-2652869 None:intergenic 35.0%
AATGCAACTTATTAACCACG+AGG - chr3.1:2652367-2652386 None:intergenic 35.0%
AATGGAGTTGAAAATGTGGA+AGG + chr3.1:2652648-2652667 MS.gene058628:CDS 35.0%
ACCAAAATAGGACAAGAACA+AGG - chr3.1:2654405-2654424 None:intergenic 35.0%
ACGGTTAAAACGGTTCAAAT+AGG + chr3.1:2652305-2652324 MS.gene058628:intron 35.0%
AGTTGCGACAATAATCTAAG+TGG - chr3.1:2652471-2652490 None:intergenic 35.0%
ATACACTGCAATTGCGATTA+TGG - chr3.1:2652917-2652936 None:intergenic 35.0%
ATCGTCTTCGATCATGAAAT+AGG - chr3.1:2651912-2651931 None:intergenic 35.0%
ATGATTCAAATGGCTGATGT+TGG + chr3.1:2654220-2654239 MS.gene058628:CDS 35.0%
ATGCCTTGAAAATGATCTCA+AGG - chr3.1:2654723-2654742 None:intergenic 35.0%
ATGGTCATTGGAATTACCAA+AGG + chr3.1:2654338-2654357 MS.gene058628:CDS 35.0%
CTAACTTTCACCTTCATCTT+TGG - chr3.1:2652603-2652622 None:intergenic 35.0%
GACTATAAGTACTATGGATG+GGG + chr3.1:2651785-2651804 MS.gene058628:CDS 35.0%
GATGGTAAGAAGTTATCACT+TGG + chr3.1:2651467-2651486 MS.gene058628:CDS 35.0%
GCACTACCAACTATTATTGT+TGG + chr3.1:2654968-2654987 MS.gene058628:CDS 35.0%
GCAGTTTCATTGAGAAGAAA+TGG + chr3.1:2651189-2651208 MS.gene058628:CDS 35.0%
GGGTAATTACGTTCAGTATA+TGG - chr3.1:2652428-2652447 None:intergenic 35.0%
GGTCAATTTACATTTGGCTA+TGG + chr3.1:2655216-2655235 MS.gene058628:CDS 35.0%
GTAAGTCACAATTCAACTAC+TGG + chr3.1:2654423-2654442 MS.gene058628:intron 35.0%
GTAATCTAACAGCTTGACAT+CGG - chr3.1:2652751-2652770 None:intergenic 35.0%
GTATCCATGTGTTACATTAC+AGG + chr3.1:2654181-2654200 MS.gene058628:intron 35.0%
GTGAGCTTAAGAATACTAGT+TGG + chr3.1:2651516-2651535 MS.gene058628:CDS 35.0%
GTGAGTCTAATTTGAAGACT+AGG + chr3.1:2651336-2651355 MS.gene058628:CDS 35.0%
GTGGTTAATGCAGCTTAAAT+AGG - chr3.1:2652452-2652471 None:intergenic 35.0%
GTTAAAACGGTTCAAATAGG+TGG + chr3.1:2652308-2652327 MS.gene058628:intron 35.0%
GTTAATGCAGCTTAAATAGG+TGG - chr3.1:2652449-2652468 None:intergenic 35.0%
GTTCCTCTCTTATTGATACA+TGG + chr3.1:2654319-2654338 MS.gene058628:CDS 35.0%
TAATCTAACAGCTTGACATC+GGG - chr3.1:2652750-2652769 None:intergenic 35.0%
TATCCTCAACTTTATAGTGC+TGG + chr3.1:2655031-2655050 MS.gene058628:CDS 35.0%
TCGGTAAAACTCTTTGTCAA+AGG + chr3.1:2653191-2653210 MS.gene058628:CDS 35.0%
TGACCATGTATCAATAAGAG+AGG - chr3.1:2654325-2654344 None:intergenic 35.0%
TGCCTTGAAAATGATCTCAA+GGG - chr3.1:2654722-2654741 None:intergenic 35.0%
TGGAAACATTGCTTTCAACA+TGG - chr3.1:2653439-2653458 None:intergenic 35.0%
TGGCTATGGATGTTATTAGA+TGG + chr3.1:2655230-2655249 MS.gene058628:CDS 35.0%
TTAAGTGTGAGAAACCGAAT+AGG + chr3.1:2651411-2651430 MS.gene058628:CDS 35.0%
TTATCAACTAGTGATCCAAC+TGG + chr3.1:2651281-2651300 MS.gene058628:CDS 35.0%
! AATGGCATCAGATTTTGCAA+TGG + chr3.1:2654279-2654298 MS.gene058628:CDS 35.0%
! AATTGGGGTTTAGTCTCTTT+TGG - chr3.1:2654748-2654767 None:intergenic 35.0%
! ATGGCATCAGATTTTGCAAT+GGG + chr3.1:2654280-2654299 MS.gene058628:CDS 35.0%
! ATTTTGCAATGGGACAGTTT+AGG + chr3.1:2654290-2654309 MS.gene058628:CDS 35.0%
! CTTTTCCAATATGCAAAGAG+TGG - chr3.1:2655142-2655161 None:intergenic 35.0%
! CTTTTGCAATTGGCAAGAAA+TGG + chr3.1:2652630-2652649 MS.gene058628:CDS 35.0%
! TCCTTGTTCTTGTCCTATTT+TGG + chr3.1:2654401-2654420 MS.gene058628:CDS 35.0%
! TGAATCTGTTGCCTTATTAC+AGG + chr3.1:2651732-2651751 MS.gene058628:CDS 35.0%
!! TAAGCATAGCTTTAGTTTCG+CGG - chr3.1:2651568-2651587 None:intergenic 35.0%
!!! GTTGTGTGCCTTTGTTTTTT+AGG + chr3.1:2654867-2654886 MS.gene058628:intron 35.0%
AAATTGTAACGCGAGTGTCT+AGG + chr3.1:2652987-2653006 MS.gene058628:intron 40.0%
AAGCAATAGGAATCATGACC+TGG - chr3.1:2651853-2651872 None:intergenic 40.0%
AATCACATCTGTTTGTGCTG+CGG + chr3.1:2651682-2651701 MS.gene058628:CDS 40.0%
AATTGTAACGCGAGTGTCTA+GGG + chr3.1:2652988-2653007 MS.gene058628:intron 40.0%
ACATCCTCTAAGCACAATGT+TGG - chr3.1:2651498-2651517 None:intergenic 40.0%
ACATTGCAGGTTCAATGTCT+TGG + chr3.1:2653106-2653125 MS.gene058628:intron 40.0%
AGACGATCGATTGTATGATG+AGG + chr3.1:2651925-2651944 MS.gene058628:CDS 40.0%
AGAGTGAAGATGAGTTTCTG+TGG - chr3.1:2653276-2653295 None:intergenic 40.0%
AGCACCTGTAATGTAACACA+TGG - chr3.1:2654188-2654207 None:intergenic 40.0%
AGCAGCAGGGATTAAAGTTT+GGG + chr3.1:2653526-2653545 MS.gene058628:CDS 40.0%
ATGGCGAATATGGAAATCGA+TGG + chr3.1:2651449-2651468 MS.gene058628:CDS 40.0%
CATTGCAGGTTCAATGTCTT+GGG + chr3.1:2653107-2653126 MS.gene058628:intron 40.0%
CATTGGAATTACCAAAGGCT+TGG + chr3.1:2654343-2654362 MS.gene058628:CDS 40.0%
CCTTGAAAATGATCTCAAGG+GGG - chr3.1:2654720-2654739 None:intergenic 40.0%
CTTCACTCTTACTCTTCACT+TGG + chr3.1:2653287-2653306 MS.gene058628:CDS 40.0%
CTTGAAAATGATCTCAAGGG+GGG - chr3.1:2654719-2654738 None:intergenic 40.0%
GATAGCAGATGCTCCTAATA+TGG - chr3.1:2653459-2653478 None:intergenic 40.0%
GATTACAGTGCCACAAAAAC+CGG + chr3.1:2652085-2652104 MS.gene058628:CDS 40.0%
GCACTTCAGAGTTTGAAGAA+TGG + chr3.1:2653345-2653364 MS.gene058628:CDS 40.0%
GCCTTGAAAATGATCTCAAG+GGG - chr3.1:2654721-2654740 None:intergenic 40.0%
GGGTATTTATAGCCTTTCGT+GGG - chr3.1:2654699-2654718 None:intergenic 40.0%
GTATCATGTAACCAAGCCTT+TGG - chr3.1:2654357-2654376 None:intergenic 40.0%
GTCAAGCTGTTAGATTACCA+AGG + chr3.1:2652753-2652772 MS.gene058628:CDS 40.0%
GTTGGTATAAGTGGACAAGA+GGG + chr3.1:2654244-2654263 MS.gene058628:CDS 40.0%
TAAACTTCAACAAGGTGTGC+CGG + chr3.1:2653484-2653503 MS.gene058628:CDS 40.0%
TAAGTACTATGGATGGGGAT+TGG + chr3.1:2651790-2651809 MS.gene058628:CDS 40.0%
TCAACCAACATTGTGCTTAG+AGG + chr3.1:2651491-2651510 MS.gene058628:CDS 40.0%
TCAGGTGTGTCAACAACAAT+AGG - chr3.1:2652726-2652745 None:intergenic 40.0%
TCTGCACTGAAACTTCGTAT+TGG - chr3.1:2651954-2651973 None:intergenic 40.0%
TGATACTTTGTGGCAAAGCA+TGG + chr3.1:2655102-2655121 MS.gene058628:CDS 40.0%
TGATGTCTGTGTCAGTATCA+GGG + chr3.1:2654492-2654511 MS.gene058628:intron 40.0%
TGTCCAGCACTATAAAGTTG+AGG - chr3.1:2655037-2655056 None:intergenic 40.0%
TTCCAATATGCAAAGAGTGG+AGG - chr3.1:2655139-2655158 None:intergenic 40.0%
TTGATGTCTGTGTCAGTATC+AGG + chr3.1:2654491-2654510 MS.gene058628:intron 40.0%
TTGTTTCCCTTGTGAAGAAG+CGG + chr3.1:2654019-2654038 MS.gene058628:CDS 40.0%
TTTCAATGTGCAAGCATACG+AGG + chr3.1:2652058-2652077 MS.gene058628:CDS 40.0%
! AAGAGTTTTACCGAACTGTC+AGG - chr3.1:2653185-2653204 None:intergenic 40.0%
! AGACGCTCTAAACATGACTT+AGG + chr3.1:2654635-2654654 MS.gene058628:intron 40.0%
! AGAGTTTTACCGAACTGTCA+GGG - chr3.1:2653184-2653203 None:intergenic 40.0%
! AGTTGGTATAAGTGGACAAG+AGG + chr3.1:2654243-2654262 MS.gene058628:CDS 40.0%
! CTATTAACGGATATACCTCG+TGG + chr3.1:2652349-2652368 MS.gene058628:intron 40.0%
! GACGCTCTAAACATGACTTA+GGG + chr3.1:2654636-2654655 MS.gene058628:intron 40.0%
! GGCAAAGCATGGTTGTATTT+TGG + chr3.1:2655113-2655132 MS.gene058628:CDS 40.0%
! TAGTCCAGAGCTTTTGCAAT+TGG + chr3.1:2652620-2652639 MS.gene058628:CDS 40.0%
!! GACTCTTGCTGTGGTTATTT+TGG + chr3.1:2655195-2655214 MS.gene058628:CDS 40.0%
!! GATGTTGGAGTTGGTATAAG+TGG + chr3.1:2654235-2654254 MS.gene058628:CDS 40.0%
AAGAATACTAGTTGGGCGCT+TGG + chr3.1:2651524-2651543 MS.gene058628:CDS 45.0%
AAGGTTCAACCGAGGTATAC+TGG + chr3.1:2651383-2651402 MS.gene058628:CDS 45.0%
ACCTAGTTCATTCTCCATGC+CGG - chr3.1:2652107-2652126 None:intergenic 45.0%
AGATCTTTGGACTCTTGCTG+TGG + chr3.1:2655186-2655205 MS.gene058628:CDS 45.0%
AGATGTCCGCTTCTTCACAA+GGG - chr3.1:2654028-2654047 None:intergenic 45.0%
ATGCTTATTGAGCGAACCTC+CGG + chr3.1:2652828-2652847 MS.gene058628:CDS 45.0%
ATTAGGCTACCCTGACAGTT+CGG + chr3.1:2653172-2653191 MS.gene058628:CDS 45.0%
CAAATGGCTGATGTTGGAGT+TGG + chr3.1:2654226-2654245 MS.gene058628:CDS 45.0%
CACTGTCGAGAATGTGTACA+AGG - chr3.1:2653748-2653767 None:intergenic 45.0%
CATAAAACCATAGGCAGCAG+CGG - chr3.1:2652811-2652830 None:intergenic 45.0%
CTAGGTGAATACTCAGTGCA+AGG + chr3.1:2652121-2652140 MS.gene058628:CDS 45.0%
CTTCGATCATGAAATAGGCC+TGG - chr3.1:2651907-2651926 None:intergenic 45.0%
CTTGCCAATTGCAAAAGCTC+TGG - chr3.1:2652627-2652646 None:intergenic 45.0%
GAAACAGGAGACAGGTTCAA+AGG + chr3.1:2651364-2651383 MS.gene058628:CDS 45.0%
GAAGACTAGGTATGCGAAAC+AGG + chr3.1:2651349-2651368 MS.gene058628:CDS 45.0%
GAGCAGCAGGGATTAAAGTT+TGG + chr3.1:2653525-2653544 MS.gene058628:CDS 45.0%
GATGCTATACCTCAACTTCC+TGG + chr3.1:2655319-2655338 MS.gene058628:CDS 45.0%
GTATAAGTGGACAAGAGGGT+AGG + chr3.1:2654248-2654267 MS.gene058628:CDS 45.0%
TACCTCAACTTCCTGGTTAC+TGG + chr3.1:2655326-2655345 MS.gene058628:CDS 45.0%
TCTGACATGACACTAGCCAT+CGG + chr3.1:2654045-2654064 MS.gene058628:CDS 45.0%
TGCACATATGCAACACCAGT+TGG - chr3.1:2651299-2651318 None:intergenic 45.0%
! ACTTAGGGCTCAAGTTGCTT+GGG + chr3.1:2654651-2654670 MS.gene058628:intron 45.0%
! ATGCTTCTAGAAGCCTTCTG+AGG - chr3.1:2654613-2654632 None:intergenic 45.0%
! CCCCCTTGAGATCATTTTCA+AGG + chr3.1:2654717-2654736 MS.gene058628:intron 45.0%
! GGGGTATTTATAGCCTTTCG+TGG - chr3.1:2654700-2654719 None:intergenic 45.0%
! GGTGACTCATGCTGTCATTT+GGG + chr3.1:2655258-2655277 MS.gene058628:CDS 45.0%
! GGTTTGGTTGAAGCGTCATA+AGG + chr3.1:2651703-2651722 MS.gene058628:CDS 45.0%
! GTGACTCATGCTGTCATTTG+GGG + chr3.1:2655259-2655278 MS.gene058628:CDS 45.0%
! TCTATGGAGCTTGTTCGTGT+TGG + chr3.1:2651881-2651900 MS.gene058628:CDS 45.0%
! TGTCGTTCTTTGTTGTCGAG+TGG + chr3.1:2653975-2653994 MS.gene058628:CDS 45.0%
!!! ATTCTCCATGCCGGTTTTTG+TGG - chr3.1:2652098-2652117 None:intergenic 45.0%
AACAGCTTGACATCGGGATC+AGG - chr3.1:2652744-2652763 None:intergenic 50.0%
ACCGGCATGGAGAATGAACT+AGG + chr3.1:2652103-2652122 MS.gene058628:CDS 50.0%
AGAACTCGTACCATCTCCGA+TGG - chr3.1:2654064-2654083 None:intergenic 50.0%
AGAGGGTAGGCAAGCTGTAA+TGG + chr3.1:2654261-2654280 MS.gene058628:CDS 50.0%
AGGTATGCGAAACAGGAGAC+AGG + chr3.1:2651356-2651375 MS.gene058628:CDS 50.0%
ATCAATGACTATGTGGCCGG+AGG - chr3.1:2652847-2652866 None:intergenic 50.0%
ATCGCCTGATGAACAAGCGT+TGG + chr3.1:2652779-2652798 MS.gene058628:CDS 50.0%
ATGACACTAGCCATCGGAGA+TGG + chr3.1:2654051-2654070 MS.gene058628:CDS 50.0%
ATGGCATGCAGCCTATGAAG+CGG + chr3.1:2653364-2653383 MS.gene058628:CDS 50.0%
CAGATGTCCGCTTCTTCACA+AGG - chr3.1:2654029-2654048 None:intergenic 50.0%
CAGGTTCAAAGGTTCAACCG+AGG + chr3.1:2651375-2651394 MS.gene058628:CDS 50.0%
CATCTGTTTGTGCTGCGGTT+TGG + chr3.1:2651687-2651706 MS.gene058628:CDS 50.0%
CGACAGTGAACACGAAGAAG+AGG + chr3.1:2653760-2653779 MS.gene058628:CDS 50.0%
CGGAAAAACAAGCCCACGAA+AGG + chr3.1:2654684-2654703 MS.gene058628:intron 50.0%
CTCAGCGACTCAATTGCTTC+CGG - chr3.1:2653506-2653525 None:intergenic 50.0%
GAGCTCCATCGAAAAGAAGC+AGG + chr3.1:2651597-2651616 MS.gene058628:CDS 50.0%
GGCCTCCACTCTTTGCATAT+TGG + chr3.1:2655134-2655153 MS.gene058628:CDS 50.0%
GGGTGACTCATGCTGTCATT+TGG + chr3.1:2655257-2655276 MS.gene058628:CDS 50.0%
GTTCATCAGGCGATTCACCT+TGG - chr3.1:2652773-2652792 None:intergenic 50.0%
TACGCCAACGCTTGTTCATC+AGG - chr3.1:2652786-2652805 None:intergenic 50.0%
TCCATCGAAAAGAAGCAGGC+TGG + chr3.1:2651601-2651620 MS.gene058628:CDS 50.0%
! AAGCACTGCGGTATTTGGTC+GGG + chr3.1:2653388-2653407 MS.gene058628:CDS 50.0%
! ACAATGCCAGCCTTTTGCAG+TGG - chr3.1:2654003-2654022 None:intergenic 50.0%
! CAAGCACTGCGGTATTTGGT+CGG + chr3.1:2653387-2653406 MS.gene058628:CDS 50.0%
! CTTAGGGCTCAAGTTGCTTG+GGG + chr3.1:2654652-2654671 MS.gene058628:intron 50.0%
! CTTCTAGAAGCCTTCTGAGG+CGG - chr3.1:2654610-2654629 None:intergenic 50.0%
! GACTTAGGGCTCAAGTTGCT+TGG + chr3.1:2654650-2654669 MS.gene058628:intron 50.0%
! TCCAGCCTGCTTCTTTTCGA+TGG - chr3.1:2651605-2651624 None:intergenic 50.0%
! TTAGGGCTCAAGTTGCTTGG+GGG + chr3.1:2654653-2654672 MS.gene058628:intron 50.0%
AAAGAAGCAGGCTGGAGACG+CGG + chr3.1:2651609-2651628 MS.gene058628:CDS 55.0%
ATTGAGTCGCTGAGAGCAGC+AGG + chr3.1:2653512-2653531 MS.gene058628:CDS 55.0%
CAGTGCCACAAAAACCGGCA+TGG + chr3.1:2652090-2652109 MS.gene058628:CDS 55.0%
GTTGCTTGGGGGCTAAGTCA+CGG + chr3.1:2654664-2654683 MS.gene058628:intron 55.0%
TCGAGTGGCTCCACTGCAAA+AGG + chr3.1:2653990-2654009 MS.gene058628:CDS 55.0%
TTGAGTCGCTGAGAGCAGCA+GGG + chr3.1:2653513-2653532 MS.gene058628:CDS 55.0%
! CTATGAAGCGGCAAGCACTG+CGG + chr3.1:2653376-2653395 MS.gene058628:CDS 55.0%
! TCCCTCTAGAAGGGGCCAAA+CGG + chr3.1:2654559-2654578 MS.gene058628:intron 55.0%
!! CTTGGTGTCGCGGTCTATTG+TGG + chr3.1:2651542-2651561 MS.gene058628:CDS 55.0%
AGGGCACACCTCCCTCTAGA+AGG + chr3.1:2654549-2654568 MS.gene058628:intron 60.0%
GCCGTTTGGCCCCTTCTAGA+GGG - chr3.1:2654563-2654582 None:intergenic 60.0%
GTGGCTCCACTGCAAAAGGC+TGG + chr3.1:2653994-2654013 MS.gene058628:CDS 60.0%
! CGCAGTGCTTGCCGCTTCAT+AGG - chr3.1:2653378-2653397 None:intergenic 60.0%
! GCGGCAAGCACTGCGGTATT+TGG + chr3.1:2653383-2653402 MS.gene058628:CDS 60.0%
! GGAGCTTGTTCGTGTTGGCC+AGG + chr3.1:2651886-2651905 MS.gene058628:CDS 60.0%
! GGCACACCTCCCTCTAGAAG+GGG + chr3.1:2654551-2654570 MS.gene058628:intron 60.0%
! GGGCACACCTCCCTCTAGAA+GGG + chr3.1:2654550-2654569 MS.gene058628:intron 60.0%
! GTTTGGCCCCTTCTAGAGGG+AGG - chr3.1:2654560-2654579 None:intergenic 60.0%
!! TAGTTGGGCGCTTGGTGTCG+CGG + chr3.1:2651532-2651551 MS.gene058628:CDS 60.0%
AGGACGCGTTCAGGGCCGTT+TGG - chr3.1:2654577-2654596 None:intergenic 65.0%
CCCTGAACGCGTCCTCCGAA+GGG + chr3.1:2654582-2654601 MS.gene058628:intron 65.0%
CCCTTCGGAGGACGCGTTCA+GGG - chr3.1:2654585-2654604 None:intergenic 65.0%
GCGTATGCCGCTGCTGCCTA+TGG + chr3.1:2652801-2652820 MS.gene058628:CDS 65.0%
GGCCGTTTGGCCCCTTCTAG+AGG - chr3.1:2654564-2654583 None:intergenic 65.0%
GCCCTGAACGCGTCCTCCGA+AGG + chr3.1:2654581-2654600 MS.gene058628:intron 70.0%
GCCCTTCGGAGGACGCGTTC+AGG - chr3.1:2654586-2654605 None:intergenic 70.0%
!! CCTTCTGAGGCGGCGCCCTT+CGG - chr3.1:2654600-2654619 None:intergenic 70.0%
! TCTGAGGCGGCGCCCTTCGG+AGG - chr3.1:2654597-2654616 None:intergenic 75.0%
!! CCGAAGGGCGCCGCCTCAGA+AGG + chr3.1:2654597-2654616 MS.gene058628:intron 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 2651179 2655347 2651179 ID=MS.gene058628
chr3.1 mRNA 2651179 2655347 2651179 ID=MS.gene058628.t1;Parent=MS.gene058628
chr3.1 exon 2651179 2652142 2651179 ID=MS.gene058628.t1.exon1;Parent=MS.gene058628.t1
chr3.1 CDS 2651179 2652142 2651179 ID=cds.MS.gene058628.t1;Parent=MS.gene058628.t1
chr3.1 exon 2652580 2652886 2652580 ID=MS.gene058628.t1.exon2;Parent=MS.gene058628.t1
chr3.1 CDS 2652580 2652886 2652580 ID=cds.MS.gene058628.t1;Parent=MS.gene058628.t1
chr3.1 exon 2653115 2653781 2653115 ID=MS.gene058628.t1.exon3;Parent=MS.gene058628.t1
chr3.1 CDS 2653115 2653781 2653115 ID=cds.MS.gene058628.t1;Parent=MS.gene058628.t1
chr3.1 exon 2653949 2654072 2653949 ID=MS.gene058628.t1.exon4;Parent=MS.gene058628.t1
chr3.1 CDS 2653949 2654072 2653949 ID=cds.MS.gene058628.t1;Parent=MS.gene058628.t1
chr3.1 exon 2654203 2654422 2654203 ID=MS.gene058628.t1.exon5;Parent=MS.gene058628.t1
chr3.1 CDS 2654203 2654422 2654203 ID=cds.MS.gene058628.t1;Parent=MS.gene058628.t1
chr3.1 exon 2654889 2655347 2654889 ID=MS.gene058628.t1.exon6;Parent=MS.gene058628.t1
chr3.1 CDS 2654889 2655347 2654889 ID=cds.MS.gene058628.t1;Parent=MS.gene058628.t1
Gene Sequence

>MS.gene058628

ATGAATGATGGCAGTTTCATTGAGAAGAAATGGAAGGATATTCGAGTTGGTGAGATTGTAAAAATCAAAACAAATGAAACAATTCCTTGTGATATTGTTTTGTTATCAACTAGTGATCCAACTGGTGTTGCATATGTGCAAACTATTAATCTTGATGGTGAGTCTAATTTGAAGACTAGGTATGCGAAACAGGAGACAGGTTCAAAGGTTCAACCGAGGTATACTGGTTTGATTAAGTGTGAGAAACCGAATAGGAATATATATGGATTTATGGCGAATATGGAAATCGATGGTAAGAAGTTATCACTTGGATCAACCAACATTGTGCTTAGAGGATGTGAGCTTAAGAATACTAGTTGGGCGCTTGGTGTCGCGGTCTATTGTGGCCGCGAAACTAAAGCTATGCTTAACAATTCAGGAGCTCCATCGAAAAGAAGCAGGCTGGAGACGCGGATGAATTACGAAATCATTATGCTGTCTTTCTTTCTCGTTGCATTGTGTACAATCACATCTGTTTGTGCTGCGGTTTGGTTGAAGCGTCATAAGGACGAGTTGAATCTGTTGCCTTATTACAGGAAACTTGATTTTTCAAAGCCGGAAGTTGAAGACTATAAGTACTATGGATGGGGATTGGAAATCTTTTTCACATTCCTTATGTCAGTTATAGTTTACCAGGTCATGATTCCTATTGCTTTGTACATTTCTATGGAGCTTGTTCGTGTTGGCCAGGCCTATTTCATGATCGAAGACGATCGATTGTATGATGAGGCTACCAATACGAAGTTTCAGTGCAGAGCTTTGAATATTAATGAAGATTTGGGGCAAATTAAGTATGTGTTCTCAGATAAAACTGGTACACTTACTGAAAATAAGATGGAGTTTCAATGTGCAAGCATACGAGGAGTCGATTACAGTGCCACAAAAACCGGCATGGAGAATGAACTAGGTGAATACTCAGTGCAAGGTGAGATTGATTTGTTCTATTTTTTACTGATATATGTGTTATTATGTTCTACTACATTTTTTTTAACATTGCCTTTAATGCATCTGGTATTGTTAATGATCGAAATAAGATAAAGGATTATTCGTCAACCGAATTTAAACAATTTTAGTGAAAACTTTTGAAACGGTTAAAACGGTTCAAATAGGTGGTTAATTACGTTTAGTAGACTATTAACGGATATACCTCGTGGTTAATAAGTTGCATTAGTAGTTAATAAGTTTTGCAACCTTATATGTTCATTAACCATATACTGAACGTAATTACCCACCTATTTAAGCTGCATTAACCACTTAGATTATTGTCGCAACTGTTGTCAAATTTTAGTTTTTCAAATAACAGAACTAGTATTTTTTATATTTGAAATAACATGTTCATTCTCTGTTAATTTCTACTCTCAGTTGATGGAAAGATCTTAAAACCAAAGATGAAGGTGAAAGTTAGTCCAGAGCTTTTGCAATTGGCAAGAAATGGAGTTGAAAATGTGGAAGGAAAAAGGATTTATGATTTCTTTCTAGCACTTGCAACCTGCAATACTATTGTGCCTATTGTTGTTGACACACCTGATCCCGATGTCAAGCTGTTAGATTACCAAGGTGAATCGCCTGATGAACAAGCGTTGGCGTATGCCGCTGCTGCCTATGGTTTTATGCTTATTGAGCGAACCTCCGGCCACATAGTCATTGATATTCATGGACAAAGACTCAAGTAAGTTTGTTATGAAAACCTTTCTATCCATAATCGCAATTGCAGTGTATGCATTTTTAGGGTCTAGTCTTTGATGATGATAATTAAATAATCACAAAAAAAATTGTAACGCGAGTGTCTAGGGTAGTGTCTGTCTAGTCTTGATAATGATAATGAAATCATCTTTAATGTGGCGCAAACAATGATTATCCATATTCTAATGAATCTTTCTCATTATGAACATTGCAGGTTCAATGTCTTGGGTTTACATGAATTTGACAGTGATAGAAAAAGAATGTCGGTTATATTAGGCTACCCTGACAGTTCGGTAAAACTCTTTGTCAAAGGAGCAGACACAACCATGTTTAGTGTAATAGACAAATCACACAACATGGACTTAATAAAAGCCACAGAAACTCATCTTCACTCTTACTCTTCACTTGGTTTAAGAACACTTGTTATTGGAATGAAAGAACTAAGCACTTCAGAGTTTGAAGAATGGCATGCAGCCTATGAAGCGGCAAGCACTGCGGTATTTGGTCGGGCTGCAATGCTTAAAAGAATTTCAAACCATGTTGAAAGCAATGTTTCCATATTAGGAGCATCTGCTATCGAAGATAAACTTCAACAAGGTGTGCCGGAAGCAATTGAGTCGCTGAGAGCAGCAGGGATTAAAGTTTGGGTTTTGACTGGTGACAAGCAAGAAACAGCTATATCTATTGGATTTTCATCAAAACTTTTGACAAGAAACATGACTCAAATTATTATTAATAGTAATAGTAAAGTGTCATGTAGAAAAAGTCTCAAAGATGCTCTTGAAAGATCTAGAAAACTTGATGCAGTTTCAACACAGATAGCTTTGATTATTGATGGTGGAAGCCTTGTACACATTCTCGACAGTGAACACGAAGAAGAGGTTAGTTTCATTATATCTTGTTGGAATTATGTTTAGGTTTAATTATTTAAAAATCTCTAAATAATTCAGTGACTTAGAGAGTAATATTAAACATACAATTTACAATTTACATTGAATTTCTTGATGATATTTTTTTTGCTGATATTGACTACTTGTGTTCGATTCAGCTGTTTCAACTAGCAAGTTTGTGTTCTGTCGTTCTTTGTTGTCGAGTGGCTCCACTGCAAAAGGCTGGCATTGTTTCCCTTGTGAAGAAGCGGACATCTGACATGACACTAGCCATCGGAGATGGTACGAGTTCTTCATTTTATTTGTTTAAACTTGTCAATTCCTTTCAGTACATTTTTTACTAGTAAGATTTATGATTTGAACCGAATATTAAAGCGAAAAAACTGATGTGTATCCATGTGTTACATTACAGGTGCTAATGATGTATCAATGATTCAAATGGCTGATGTTGGAGTTGGTATAAGTGGACAAGAGGGTAGGCAAGCTGTAATGGCATCAGATTTTGCAATGGGACAGTTTAGGTTTTTAGTTCCTCTCTTATTGATACATGGTCATTGGAATTACCAAAGGCTTGGTTACATGATACTATACAATTTCTACAGAAATGCAATCCTTGTTCTTGTCCTATTTTGGTAAGTCACAATTCAACTACTGGTTTATCATATTGTATATGTTGTGCATATACGTGTCAATATCATGTTTGATGTCTGTGTCAGTATCAGGGTTTTATAGATAATTGGACTGTCAATATATAATTAAGGGCACACCTCCCTCTAGAAGGGGCCAAACGGCCCTGAACGCGTCCTCCGAAGGGCGCCGCCTCAGAAGGCTTCTAGAAGCATCTAGACGCTCTAAACATGACTTAGGGCTCAAGTTGCTTGGGGGCTAAGTCACGGAAAAACAAGCCCACGAAAGGCTATAAATACCCCCCTTGAGATCATTTTCAAGGCATGACCAAAAGAGACTAAACCCCAATTTCAGATATTGTACTCACTGCAAATACAATAATAATTGTCTTTTGATATATCTTTCTATTTCATCTTCTCCTAAAGATTTTAACATAGTAATAATACTTTGTTGTGTGCCTTTGTTTTTTAGGTATGTTCTCTACACTGCTTTCACTTCAACAACTGCAATAAATGAATGGAGCTCCACATTGTACTCAATAATCTACAGTGCACTACCAACTATTATTGTTGGAATTCTTGACAAAGATCTTAGTAGAAGCACTCTCCTAAAGTATCCTCAACTTTATAGTGCTGGACAAAGAGATGAAGCCTACAACAAGAAACTGTTTTTGTTAACAATGGTTGATACTTTGTGGCAAAGCATGGTTGTATTTTGGCCTCCACTCTTTGCATATTGGAAAAGTACTATTGATATAGCAAGCATAGGAGATCTTTGGACTCTTGCTGTGGTTATTTTGGTCAATTTACATTTGGCTATGGATGTTATTAGATGGTATTGGGTGACTCATGCTGTCATTTGGGGATCTATTGCTGCTACATTCATTTCTGTCATGATCATTGATGCTATACCTCAACTTCCTGGTTACTG

Protein sequence

>MS.gene058628.t1

MNDGSFIEKKWKDIRVGEIVKIKTNETIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETGSKVQPRYTGLIKCEKPNRNIYGFMANMEIDGKKLSLGSTNIVLRGCELKNTSWALGVAVYCGRETKAMLNNSGAPSKRSRLETRMNYEIIMLSFFLVALCTITSVCAAVWLKRHKDELNLLPYYRKLDFSKPEVEDYKYYGWGLEIFFTFLMSVIVYQVMIPIALYISMELVRVGQAYFMIEDDRLYDEATNTKFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIRGVDYSATKTGMENELGEYSVQVDGKILKPKMKVKVSPELLQLARNGVENVEGKRIYDFFLALATCNTIVPIVVDTPDPDVKLLDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHGQRLKFNVLGLHEFDSDRKRMSVILGYPDSSVKLFVKGADTTMFSVIDKSHNMDLIKATETHLHSYSSLGLRTLVIGMKELSTSEFEEWHAAYEAASTAVFGRAAMLKRISNHVESNVSILGASAIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISIGFSSKLLTRNMTQIIINSNSKVSCRKSLKDALERSRKLDAVSTQIALIIDGGSLVHILDSEHEEELFQLASLCSVVLCCRVAPLQKAGIVSLVKKRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAILVLVLFWYVLYTAFTSTTAINEWSSTLYSIIYSALPTIIVGILDKDLSRSTLLKYPQLYSAGQRDEAYNKKLFLLTMVDTLWQSMVVFWPPLFAYWKSTIDIASIGDLWTLAVVILVNLHLAMDVIRWYWVTHAVIWGSIAATFISVMIIDAIPQLPGY