Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32842.t1 | XP_013461828.1 | 98.4 | 255 | 4 | 0 | 1 | 255 | 133 | 387 | 1.00E-138 | 502.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32842.t1 | Q9M439 | 71.8 | 255 | 72 | 0 | 1 | 255 | 134 | 388 | 6.3e-105 | 381.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32842.t1 | A0A072V1K9 | 98.4 | 255 | 4 | 0 | 1 | 255 | 69 | 323 | 7.4e-139 | 502.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051946 | MS.gene32842 | 0.810572 | 1.08E-50 | -1.69E-46 |
| MS.gene052922 | MS.gene32842 | 0.830689 | 2.55E-55 | -1.69E-46 |
| MS.gene053549 | MS.gene32842 | 0.811358 | 7.29E-51 | -1.69E-46 |
| MS.gene05726 | MS.gene32842 | 0.848034 | 7.93E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32842.t1 | MTR_3g103580 | 98.431 | 255 | 4 | 0 | 1 | 255 | 69 | 323 | 0.0 | 517 |
| MS.gene32842.t1 | MTR_3g103580 | 98.431 | 255 | 4 | 0 | 1 | 255 | 133 | 387 | 0.0 | 515 |
| MS.gene32842.t1 | MTR_3g103580 | 98.624 | 218 | 3 | 0 | 1 | 218 | 133 | 350 | 3.06e-156 | 438 |
| MS.gene32842.t1 | MTR_5g014960 | 65.354 | 254 | 88 | 0 | 1 | 254 | 154 | 407 | 2.19e-118 | 344 |
| MS.gene32842.t1 | MTR_4g092580 | 58.824 | 255 | 105 | 0 | 1 | 255 | 103 | 357 | 1.31e-109 | 320 |
| MS.gene32842.t1 | MTR_4g092590 | 60.311 | 257 | 98 | 2 | 1 | 255 | 103 | 357 | 6.67e-106 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32842.t1 | AT1G10070 | 71.765 | 255 | 72 | 0 | 1 | 255 | 64 | 318 | 1.11e-137 | 390 |
| MS.gene32842.t1 | AT1G10070 | 71.765 | 255 | 72 | 0 | 1 | 255 | 134 | 388 | 8.08e-137 | 390 |
| MS.gene32842.t1 | AT1G10070 | 71.765 | 255 | 72 | 0 | 1 | 255 | 134 | 388 | 8.08e-137 | 390 |
| MS.gene32842.t1 | AT1G10060 | 67.984 | 253 | 81 | 0 | 1 | 253 | 64 | 316 | 1.71e-127 | 364 |
| MS.gene32842.t1 | AT1G10060 | 67.984 | 253 | 81 | 0 | 1 | 253 | 130 | 382 | 1.72e-126 | 364 |
| MS.gene32842.t1 | AT1G10060 | 67.984 | 253 | 81 | 0 | 1 | 253 | 226 | 478 | 3.16e-125 | 364 |
| MS.gene32842.t1 | AT3G49680 | 65.098 | 255 | 88 | 1 | 1 | 254 | 158 | 412 | 2.03e-117 | 342 |
| MS.gene32842.t1 | AT3G49680 | 65.098 | 255 | 88 | 1 | 1 | 254 | 156 | 410 | 2.39e-117 | 342 |
| MS.gene32842.t1 | AT5G65780 | 63.922 | 255 | 91 | 1 | 1 | 254 | 160 | 414 | 3.23e-116 | 339 |
| MS.gene32842.t1 | AT1G50110 | 58.824 | 255 | 104 | 1 | 1 | 255 | 64 | 317 | 1.20e-111 | 324 |
| MS.gene32842.t1 | AT1G50110 | 58.824 | 255 | 104 | 1 | 1 | 255 | 99 | 352 | 4.03e-111 | 324 |
| MS.gene32842.t1 | AT1G10060 | 71.560 | 218 | 62 | 0 | 1 | 218 | 130 | 347 | 5.39e-111 | 324 |
| MS.gene32842.t1 | AT1G10060 | 71.560 | 218 | 62 | 0 | 1 | 218 | 226 | 443 | 7.75e-110 | 325 |
| MS.gene32842.t1 | AT1G50090 | 58.431 | 255 | 105 | 1 | 1 | 255 | 102 | 355 | 5.60e-107 | 314 |
| MS.gene32842.t1 | AT3G19710 | 51.373 | 255 | 123 | 1 | 1 | 255 | 98 | 351 | 6.26e-96 | 285 |
| MS.gene32842.t1 | AT1G10060 | 70.659 | 167 | 49 | 0 | 1 | 167 | 130 | 296 | 1.37e-82 | 250 |
| MS.gene32842.t1 | AT1G10060 | 70.659 | 167 | 49 | 0 | 1 | 167 | 226 | 392 | 3.37e-81 | 249 |
Find 69 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCACTTTACCTTCTATTC+TGG | 0.200728 | 3.1:+82029879 | None:intergenic |
| AAATGGTACCGGTGCATAAT+TGG | 0.204590 | 3.1:+82032168 | None:intergenic |
| TTAGGAAGTGGTCCGGTTCT+TGG | 0.250877 | 3.1:-82032450 | MS.gene32842:CDS |
| ACCTGTTTGTATTCCTAAAA+TGG | 0.255480 | 3.1:+82029504 | None:intergenic |
| TGCCAGTGATTTGGGTTATC+AGG | 0.275271 | 3.1:-82031118 | MS.gene32842:intron |
| CATTGAAATTGCCAGTGATT+TGG | 0.302811 | 3.1:-82031127 | MS.gene32842:CDS |
| GCAAAGGGTCGTTGTATCTT+AGG | 0.318014 | 3.1:-82032482 | MS.gene32842:CDS |
| CCCTGTTCGCAACTATTTCA+AGG | 0.338859 | 3.1:-82032385 | MS.gene32842:intron |
| TCTTGTGATTCCGGAAAGTA+TGG | 0.340136 | 3.1:+82031158 | None:intergenic |
| GGAAAGTATGGTTCCATTGA+TGG | 0.362249 | 3.1:+82031170 | None:intergenic |
| CCTTGACATGTAGGTCTTGA+TGG | 0.367499 | 3.1:-82031754 | MS.gene32842:intron |
| TATCTTAGGCCACTGCTCTT+AGG | 0.375755 | 3.1:-82032468 | MS.gene32842:CDS |
| ATTGAAATTGCCAGTGATTT+GGG | 0.377285 | 3.1:-82031126 | MS.gene32842:CDS |
| ACCTTGAAATAGTTGCGAAC+AGG | 0.382294 | 3.1:+82032384 | None:intergenic |
| TGCTAGAGCAGTTTGCTTCA+AGG | 0.383554 | 3.1:+82032656 | None:intergenic |
| TATATGAGGAATGTGTATTC+AGG | 0.397711 | 3.1:+82032414 | None:intergenic |
| AAGTGGTCCGGTTCTTGGTT+TGG | 0.404166 | 3.1:-82032445 | MS.gene32842:CDS |
| GTGGACTATAAAACAGGTTC+TGG | 0.405793 | 3.1:-82029553 | MS.gene32842:CDS |
| CGTGCTTCGCAACGCGGGAC+TGG | 0.439406 | 3.1:-82032208 | MS.gene32842:CDS |
| ATTGATGGCAGGCGTTGAAA+TGG | 0.440858 | 3.1:+82031185 | None:intergenic |
| AGGTAGTATTGAAGATAAGA+AGG | 0.442292 | 3.1:-82029485 | MS.gene32842:CDS |
| ATCAATGGAACCATACTTTC+CGG | 0.443211 | 3.1:-82031168 | MS.gene32842:CDS |
| CTTGCACAACTCTTGACAAA+TGG | 0.449586 | 3.1:+82029528 | None:intergenic |
| TACCGGTGCATAATTGGAAA+TGG | 0.455649 | 3.1:+82032174 | None:intergenic |
| ACTTAATTTGTATGTGGAAG+AGG | 0.457846 | 3.1:-82032239 | MS.gene32842:CDS |
| ATTTCAACGCCTGCCATCAA+TGG | 0.460138 | 3.1:-82031183 | MS.gene32842:CDS |
| GTATCACATACCAGAATAGA+AGG | 0.460502 | 3.1:-82029889 | MS.gene32842:intron |
| TAATTTATAGGTTCCTCCAC+CGG | 0.461428 | 3.1:-82032505 | MS.gene32842:intron |
| TGCAGGGTGGACTATAAAAC+AGG | 0.473120 | 3.1:-82029559 | MS.gene32842:intron |
| ATCGGAAAATCCTCTGCTCT+TGG | 0.477180 | 3.1:+82031719 | None:intergenic |
| AATGCAATTCGCATGAAGAT+TGG | 0.484572 | 3.1:-82032729 | None:intergenic |
| CGCGCCACTTAATTTGTATG+TGG | 0.486258 | 3.1:-82032245 | MS.gene32842:CDS |
| GGCATCAACAAATTGATCAA+TGG | 0.490126 | 3.1:+82032677 | None:intergenic |
| GCTGGAGCCAAACCAAGAAC+CGG | 0.491499 | 3.1:+82032438 | None:intergenic |
| TGCTCTAGCAAACAAGCGTT+GGG | 0.496963 | 3.1:-82032643 | MS.gene32842:intron |
| AGGTTCCTCCACCGGGCAAA+GGG | 0.499399 | 3.1:-82032497 | MS.gene32842:CDS |
| AGATACAACGACCCTTTGCC+CGG | 0.499668 | 3.1:+82032486 | None:intergenic |
| TAGGTTCCTCCACCGGGCAA+AGG | 0.501342 | 3.1:-82032498 | MS.gene32842:CDS |
| CTGCTCTAGCAAACAAGCGT+TGG | 0.505553 | 3.1:-82032644 | MS.gene32842:CDS |
| AGGCCACTGCTCTTAGGAAG+TGG | 0.509303 | 3.1:-82032462 | MS.gene32842:CDS |
| CCTTGAAATAGTTGCGAACA+GGG | 0.513370 | 3.1:+82032385 | None:intergenic |
| GCTGTCGGTGTTGCTCCTGT+AGG | 0.514968 | 3.1:-82029914 | MS.gene32842:CDS |
| AACGACCCTTTGCCCGGTGG+AGG | 0.518065 | 3.1:+82032492 | None:intergenic |
| AATTTATAGGTTCCTCCACC+GGG | 0.527583 | 3.1:-82032504 | MS.gene32842:intron |
| CTGTCGGTGTTGCTCCTGTA+GGG | 0.530130 | 3.1:-82029913 | MS.gene32842:CDS |
| TTCTGTACAGGAACTGCTGT+CGG | 0.530561 | 3.1:-82029929 | MS.gene32842:CDS |
| GGTAGTATTGAAGATAAGAA+GGG | 0.530796 | 3.1:-82029484 | MS.gene32842:CDS |
| AACCATTTCCAATTATGCAC+CGG | 0.531718 | 3.1:-82032176 | MS.gene32842:intron |
| AGGAATGTGTATTCAGGTGC+TGG | 0.532284 | 3.1:+82032420 | None:intergenic |
| TCTTCCACATACAAATTAAG+TGG | 0.533831 | 3.1:+82032241 | None:intergenic |
| TACCTGATAACCCAAATCAC+TGG | 0.560844 | 3.1:+82031116 | None:intergenic |
| CAGTCCCGCGTTGCGAAGCA+CGG | 0.561077 | 3.1:+82032209 | None:intergenic |
| TTGACCGTGCTTCGCAACGC+GGG | 0.561096 | 3.1:-82032213 | MS.gene32842:CDS |
| TGGTATGTGATACTCCCTAC+AGG | 0.561876 | 3.1:+82029899 | None:intergenic |
| GAACAGGGGAAGCATATATG+AGG | 0.580432 | 3.1:+82032400 | None:intergenic |
| AGTATGGTTCCATTGATGGC+AGG | 0.580853 | 3.1:+82031174 | None:intergenic |
| ACAGAAAACTTCATCTGCCT+CGG | 0.585007 | 3.1:+82029946 | None:intergenic |
| GGAAGAGCGCGTTGTTGCTG+TGG | 0.591202 | 3.1:-82029978 | MS.gene32842:CDS |
| ACTGCTCTTAGGAAGTGGTC+CGG | 0.600004 | 3.1:-82032457 | MS.gene32842:CDS |
| TCAACAAATTGATCAATGGA+AGG | 0.611879 | 3.1:+82032681 | None:intergenic |
| TTTGACCGTGCTTCGCAACG+CGG | 0.611947 | 3.1:-82032214 | MS.gene32842:CDS |
| GTATTGAAGATAAGAAGGGA+TGG | 0.616637 | 3.1:-82029480 | MS.gene32842:CDS |
| CACATACAAATTAAGTGGCG+CGG | 0.630226 | 3.1:+82032246 | None:intergenic |
| CAAAATAGAGCCAAGAGCAG+AGG | 0.632269 | 3.1:-82031729 | MS.gene32842:CDS |
| TGAATCAAGGTATAACACAT+CGG | 0.667794 | 3.1:+82031701 | None:intergenic |
| GGACCACTTCCTAAGAGCAG+TGG | 0.684872 | 3.1:+82032459 | None:intergenic |
| TACAACGACCCTTTGCCCGG+TGG | 0.687415 | 3.1:+82032489 | None:intergenic |
| CTTGAAATAGTTGCGAACAG+GGG | 0.708149 | 3.1:+82032386 | None:intergenic |
| TGCTGTGGATGAATTGACCG+AGG | 0.715955 | 3.1:-82029963 | MS.gene32842:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAAGTAAACTATA+AGG | - | chr3.1:82032357-82032376 | MS.gene32842:intron | 10.0% |
| !! | CTTTAATAAAAAAAATTGAT+TGG | + | chr3.1:82030566-82030585 | None:intergenic | 10.0% |
| !! | TCATATATAAATAGAAAAAT+TGG | + | chr3.1:82032133-82032152 | None:intergenic | 10.0% |
| !!! | TTTTTTATTAAAGATATGTT+AGG | - | chr3.1:82030573-82030592 | MS.gene32842:intron | 10.0% |
| !! | ATATATATCAACAATATTTC+AGG | + | chr3.1:82032597-82032616 | None:intergenic | 15.0% |
| !! | TAGACCAATTATTAATTTAT+AGG | - | chr3.1:82029662-82029681 | MS.gene32842:intron | 15.0% |
| !! | TAGGTCAAATTTAATTAAAA+TGG | + | chr3.1:82029587-82029606 | None:intergenic | 15.0% |
| !!! | AACATTTTTATTAGATACAA+AGG | - | chr3.1:82032330-82032349 | MS.gene32842:intron | 15.0% |
| !!! | TAAAAGCATTAACAATTTTT+AGG | + | chr3.1:82029606-82029625 | None:intergenic | 15.0% |
| !!! | TTTATCTAGATAGAAAATTT+TGG | + | chr3.1:82032454-82032473 | None:intergenic | 15.0% |
| !!! | TTTATTTAAATTCTGGTTTT+CGG | - | chr3.1:82030837-82030856 | MS.gene32842:intron | 15.0% |
| !! | AAGCTATTCTTTAAATTGAT+TGG | - | chr3.1:82031495-82031514 | MS.gene32842:intron | 20.0% |
| !! | CTTCATAATAGAACATTATA+AGG | - | chr3.1:82031566-82031585 | MS.gene32842:intron | 20.0% |
| !! | GGAACCTATAAATTAATAAT+TGG | + | chr3.1:82029669-82029688 | None:intergenic | 20.0% |
| !! | TATCTTCCTTCAAAATAAAA+AGG | + | chr3.1:82032484-82032503 | None:intergenic | 20.0% |
| !! | TATGTATATATGAGAAAGAT+TGG | + | chr3.1:82031191-82031210 | None:intergenic | 20.0% |
| !! | TGTTGATATATATATATGCA+GGG | - | chr3.1:82032604-82032623 | MS.gene32842:intron | 20.0% |
| !! | TTCAACATTAAAAATTCCTT+CGG | + | chr3.1:82031264-82031283 | None:intergenic | 20.0% |
| !! | TTGTTGATATATATATATGC+AGG | - | chr3.1:82032603-82032622 | MS.gene32842:intron | 20.0% |
| !!! | ATTTTCAGGACATAATTTTT+AGG | + | chr3.1:82031977-82031996 | None:intergenic | 20.0% |
| !!! | TATCAACCTTTTTATTTTGA+AGG | - | chr3.1:82032475-82032494 | MS.gene32842:CDS | 20.0% |
| !!! | TTTATTGATTAAGACCAAAT+CGG | - | chr3.1:82032171-82032190 | MS.gene32842:intron | 20.0% |
| ! | AACAATATTTCAGGAAAACT+TGG | + | chr3.1:82032588-82032607 | None:intergenic | 25.0% |
| ! | AACTTGGATTTCAATTTCTT+AGG | - | chr3.1:82030965-82030984 | MS.gene32842:intron | 25.0% |
| ! | AATTGAGTGAAGATTTGAAA+TGG | + | chr3.1:82030031-82030050 | None:intergenic | 25.0% |
| ! | AATTGATTGGAATAATACCT+TGG | + | chr3.1:82030553-82030572 | None:intergenic | 25.0% |
| ! | ACTTGGATTTCAATTTCTTA+GGG | - | chr3.1:82030966-82030985 | MS.gene32842:intron | 25.0% |
| ! | AGATGAAAATGATGTATGAT+AGG | + | chr3.1:82031307-82031326 | None:intergenic | 25.0% |
| ! | AGGTACATTAGTTAAAAACA+AGG | + | chr3.1:82030347-82030366 | None:intergenic | 25.0% |
| ! | ATTAAGCAGAATCAAATGAA+TGG | - | chr3.1:82031995-82032014 | MS.gene32842:intron | 25.0% |
| ! | CAGAAGGTTTATTTAAATTC+TGG | - | chr3.1:82030830-82030849 | MS.gene32842:intron | 25.0% |
| ! | TACATATAGTGTATTGTGAT+TGG | - | chr3.1:82031447-82031466 | MS.gene32842:intron | 25.0% |
| ! | TGAAATACATATCATAAGTG+TGG | - | chr3.1:82031613-82031632 | MS.gene32842:intron | 25.0% |
| ! | TTAATTAAAATGGACACATG+AGG | + | chr3.1:82029577-82029596 | None:intergenic | 25.0% |
| ! | TTCAAACAGTAAGAAAAATC+TGG | - | chr3.1:82030497-82030516 | MS.gene32842:intron | 25.0% |
| ! | TTTATTAACACCAATTTGGA+TGG | - | chr3.1:82029887-82029906 | MS.gene32842:intron | 25.0% |
| !! | AACGCTTTCATATCATATTT+TGG | - | chr3.1:82032103-82032122 | MS.gene32842:intron | 25.0% |
| !! | ATGTAGCTTTTGTCAAATTA+TGG | - | chr3.1:82030159-82030178 | MS.gene32842:intron | 25.0% |
| !! | TTGTAACATTTTTATTGCCA+AGG | - | chr3.1:82030533-82030552 | MS.gene32842:intron | 25.0% |
| !! | TTTGATTCTGCTTAATTTTC+AGG | + | chr3.1:82031991-82032010 | None:intergenic | 25.0% |
| !! | TTTTCTTACTGTTTGAATCA+AGG | + | chr3.1:82030494-82030513 | None:intergenic | 25.0% |
| !!! | AGTTGATTTTTTTTTACCGA+AGG | - | chr3.1:82031245-82031264 | MS.gene32842:intron | 25.0% |
| !!! | ATAATTTTTAGGACTGTGAT+AGG | + | chr3.1:82031966-82031985 | None:intergenic | 25.0% |
| !!! | TGTCATGTTAGTATTAGTTT+TGG | + | chr3.1:82030282-82030301 | None:intergenic | 25.0% |
| !!! | TTTCTAGTGTAACAAACTTT+TGG | + | chr3.1:82030809-82030828 | None:intergenic | 25.0% |
| AAACAGTAAGAAAAATCTGG+AGG | - | chr3.1:82030500-82030519 | MS.gene32842:intron | 30.0% | |
| AACTAATACTAACATGACAC+TGG | - | chr3.1:82030283-82030302 | MS.gene32842:intron | 30.0% | |
| ACCTGTTTGTATTCCTAAAA+TGG | + | chr3.1:82032678-82032697 | None:intergenic | 30.0% | |
| AGCGTTTATTAACACCAATT+TGG | - | chr3.1:82029883-82029902 | MS.gene32842:intron | 30.0% | |
| AGTTAACAAACCATCCAAAT+TGG | + | chr3.1:82029900-82029919 | None:intergenic | 30.0% | |
| ATTGAAATTGCCAGTGATTT+GGG | - | chr3.1:82031053-82031072 | MS.gene32842:intron | 30.0% | |
| CAGCGAGTTAAATGAAATTA+TGG | - | chr3.1:82030107-82030126 | MS.gene32842:intron | 30.0% | |
| CGAGTTAAATGAAATTATGG+TGG | - | chr3.1:82030110-82030129 | MS.gene32842:intron | 30.0% | |
| CTATCTGTTATATTTGCAAC+TGG | - | chr3.1:82030935-82030954 | MS.gene32842:intron | 30.0% | |
| TATATGAGGAATGTGTATTC+AGG | + | chr3.1:82029768-82029787 | None:intergenic | 30.0% | |
| TCAACAAATTGATCAATGGA+AGG | + | chr3.1:82029501-82029520 | None:intergenic | 30.0% | |
| TCTTCCACATACAAATTAAG+TGG | + | chr3.1:82029941-82029960 | None:intergenic | 30.0% | |
| TGAATCAAGGTATAACACAT+CGG | + | chr3.1:82030481-82030500 | None:intergenic | 30.0% | |
| TGATATATATATATGCAGGG+TGG | - | chr3.1:82032607-82032626 | MS.gene32842:intron | 30.0% | |
| ! | AGGTAGTATTGAAGATAAGA+AGG | - | chr3.1:82032694-82032713 | MS.gene32842:CDS | 30.0% |
| ! | ATTTCTATTGTTTGAGTTCG+TGG | + | chr3.1:82031420-82031439 | None:intergenic | 30.0% |
| ! | GGACTTTTCTAATAATTCTG+TGG | + | chr3.1:82032052-82032071 | None:intergenic | 30.0% |
| ! | GGGTTAATGTTATGTTACTT+AGG | + | chr3.1:82032073-82032092 | None:intergenic | 30.0% |
| ! | GGTAGTATTGAAGATAAGAA+GGG | - | chr3.1:82032695-82032714 | MS.gene32842:CDS | 30.0% |
| !! | ACCATTTTAGGAATACAAAC+AGG | - | chr3.1:82032674-82032693 | MS.gene32842:CDS | 30.0% |
| !! | ACTTAATTTGTATGTGGAAG+AGG | - | chr3.1:82029940-82029959 | MS.gene32842:CDS | 30.0% |
| !!! | AACTAATGCCTAGTTTTACT+TGG | - | chr3.1:82030068-82030087 | MS.gene32842:intron | 30.0% |
| !!! | TGGTAACTTTAGCTCTTTTT+TGG | - | chr3.1:82032015-82032034 | MS.gene32842:intron | 30.0% |
| AACCATTTCCAATTATGCAC+CGG | - | chr3.1:82030003-82030022 | MS.gene32842:intron | 35.0% | |
| AAGCAAACTAAGTGTCCTAT+CGG | + | chr3.1:82031799-82031818 | None:intergenic | 35.0% | |
| ATCAATGGAACCATACTTTC+CGG | - | chr3.1:82031011-82031030 | MS.gene32842:intron | 35.0% | |
| CAGAATAGAAGGTAAAGTGA+TGG | - | chr3.1:82032301-82032320 | MS.gene32842:intron | 35.0% | |
| CATCACTTTACCTTCTATTC+TGG | + | chr3.1:82032303-82032322 | None:intergenic | 35.0% | |
| CATTGAAATTGCCAGTGATT+TGG | - | chr3.1:82031052-82031071 | MS.gene32842:intron | 35.0% | |
| CGACAAAGATGAAACGATTA+TGG | + | chr3.1:82031097-82031116 | None:intergenic | 35.0% | |
| GGCATCAACAAATTGATCAA+TGG | + | chr3.1:82029505-82029524 | None:intergenic | 35.0% | |
| GTATCACATACCAGAATAGA+AGG | - | chr3.1:82032290-82032309 | MS.gene32842:intron | 35.0% | |
| GTATTGAAGATAAGAAGGGA+TGG | - | chr3.1:82032699-82032718 | MS.gene32842:CDS | 35.0% | |
| GTGTAATGTGATTCAGCATT+AGG | + | chr3.1:82030367-82030386 | None:intergenic | 35.0% | |
| TAAGTGCATGATTGGATAGA+CGG | + | chr3.1:82030223-82030242 | None:intergenic | 35.0% | |
| TAATTTATAGGTTCCTCCAC+CGG | - | chr3.1:82029674-82029693 | MS.gene32842:intron | 35.0% | |
| TGCACTTATAAGTGCATGAT+TGG | + | chr3.1:82030231-82030250 | None:intergenic | 35.0% | |
| TTGTTACACTAGAAAGCAGA+AGG | - | chr3.1:82030814-82030833 | MS.gene32842:intron | 35.0% | |
| ! | GTGAAGATTTGAAATGGTAC+CGG | + | chr3.1:82030025-82030044 | None:intergenic | 35.0% |
| !! | ATGAAAGCGTTGCAAAAAAG+TGG | + | chr3.1:82032094-82032113 | None:intergenic | 35.0% |
| !! | TAGAAGGTAAAGTGATGGAT+TGG | - | chr3.1:82032306-82032325 | MS.gene32842:intron | 35.0% |
| !! | TGAAAGCGTTGCAAAAAAGT+GGG | + | chr3.1:82032093-82032112 | None:intergenic | 35.0% |
| !!! | GACACTTTTTCTTGTGATTC+CGG | + | chr3.1:82031033-82031052 | None:intergenic | 35.0% |
| !!! | TTCTGCATTTTGTTGCTTTC+TGG | - | chr3.1:82031147-82031166 | MS.gene32842:CDS | 35.0% |
| AAGTGCATGATTGGATAGAC+GGG | + | chr3.1:82030222-82030241 | None:intergenic | 40.0% | |
| AATTTATAGGTTCCTCCACC+GGG | - | chr3.1:82029675-82029694 | MS.gene32842:intron | 40.0% | |
| ACAGAAAACTTCATCTGCCT+CGG | + | chr3.1:82032236-82032255 | None:intergenic | 40.0% | |
| ACCATGCACCAAGTAAAACT+AGG | + | chr3.1:82030079-82030098 | None:intergenic | 40.0% | |
| ACCTTGAAATAGTTGCGAAC+AGG | + | chr3.1:82029798-82029817 | None:intergenic | 40.0% | |
| ATCGTGTTATGTGACTGCAA+AGG | - | chr3.1:82031901-82031920 | MS.gene32842:intron | 40.0% | |
| CAAGCTGACATGAGTATACA+TGG | - | chr3.1:82030691-82030710 | MS.gene32842:intron | 40.0% | |
| CACATACAAATTAAGTGGCG+CGG | + | chr3.1:82029936-82029955 | None:intergenic | 40.0% | |
| CAGTAAGAAAAATCTGGAGG+AGG | - | chr3.1:82030503-82030522 | MS.gene32842:intron | 40.0% | |
| CCTTGAAATAGTTGCGAACA+GGG | + | chr3.1:82029797-82029816 | None:intergenic | 40.0% | |
| CGAAACACTAGTAATATCCC+CGG | - | chr3.1:82032547-82032566 | MS.gene32842:intron | 40.0% | |
| CTTGAAATAGTTGCGAACAG+GGG | + | chr3.1:82029796-82029815 | None:intergenic | 40.0% | |
| CTTGCACAACTCTTGACAAA+TGG | + | chr3.1:82032654-82032673 | None:intergenic | 40.0% | |
| TACCGGTGCATAATTGGAAA+TGG | + | chr3.1:82030008-82030027 | None:intergenic | 40.0% | |
| TACCTGATAACCCAAATCAC+TGG | + | chr3.1:82031066-82031085 | None:intergenic | 40.0% | |
| TATGAGTTCAGAACACCGAT+AGG | - | chr3.1:82031781-82031800 | MS.gene32842:intron | 40.0% | |
| TCCCATTGAAACTGAGTTCT+CGG | + | chr3.1:82031865-82031884 | None:intergenic | 40.0% | |
| TCCGAGAACTCAGTTTCAAT+GGG | - | chr3.1:82031861-82031880 | MS.gene32842:intron | 40.0% | |
| TCGTGTTATGTGACTGCAAA+GGG | - | chr3.1:82031902-82031921 | MS.gene32842:intron | 40.0% | |
| TCTTGTGATTCCGGAAAGTA+TGG | + | chr3.1:82031024-82031043 | None:intergenic | 40.0% | |
| TGCTATGCTATTGAGTGCTA+CGG | + | chr3.1:82030398-82030417 | None:intergenic | 40.0% | |
| ! | AGGTGTCTATCGTTAAGTTG+CGG | + | chr3.1:82031946-82031965 | None:intergenic | 40.0% |
| ! | GAGTTGTGCAAGACCATTTT+AGG | - | chr3.1:82032662-82032681 | MS.gene32842:CDS | 40.0% |
| ! | GATTAAGACCAAATCGGTTC+AGG | - | chr3.1:82032177-82032196 | MS.gene32842:CDS | 40.0% |
| ! | GCAGATGAAGTTTTCTGTAC+AGG | - | chr3.1:82032238-82032257 | MS.gene32842:CDS | 40.0% |
| ! | GGAAAGTATGGTTCCATTGA+TGG | + | chr3.1:82031012-82031031 | None:intergenic | 40.0% |
| ! | GTGGACTATAAAACAGGTTC+TGG | - | chr3.1:82032626-82032645 | MS.gene32842:intron | 40.0% |
| ! | TGCAACTGGTCTATCTAACT+TGG | - | chr3.1:82030949-82030968 | MS.gene32842:intron | 40.0% |
| !! | AAATGGTACCGGTGCATAAT+TGG | + | chr3.1:82030014-82030033 | None:intergenic | 40.0% |
| !! | GGATGGTTTGTTAACTTGAC+AGG | - | chr3.1:82029904-82029923 | MS.gene32842:CDS | 40.0% |
| !! | GGTTTGTTAACTTGACAGGA+AGG | - | chr3.1:82029908-82029927 | MS.gene32842:CDS | 40.0% |
| !!! | AGTTTTACTTGGTGCATGGT+TGG | - | chr3.1:82030079-82030098 | MS.gene32842:intron | 40.0% |
| !!! | TTGTTTTTGCACATTGCAGC+TGG | - | chr3.1:82029860-82029879 | MS.gene32842:intron | 40.0% |
| AACCCTATCATCAGAACCTC+TGG | + | chr3.1:82030729-82030748 | None:intergenic | 45.0% | |
| AGGAATGTGTATTCAGGTGC+TGG | + | chr3.1:82029762-82029781 | None:intergenic | 45.0% | |
| ATCGGAAAATCCTCTGCTCT+TGG | + | chr3.1:82030463-82030482 | None:intergenic | 45.0% | |
| ATGGAAAAGTTCAGAGCCAG+AGG | - | chr3.1:82030710-82030729 | MS.gene32842:intron | 45.0% | |
| ATTTCAACGCCTGCCATCAA+TGG | - | chr3.1:82030996-82031015 | MS.gene32842:intron | 45.0% | |
| CAAAATAGAGCCAAGAGCAG+AGG | - | chr3.1:82030450-82030469 | MS.gene32842:intron | 45.0% | |
| CAGTTAGAGCATGCACAACT+AGG | + | chr3.1:82030886-82030905 | None:intergenic | 45.0% | |
| CCATCAAGACCTACATGTCA+AGG | + | chr3.1:82030428-82030447 | None:intergenic | 45.0% | |
| CCCTGTTCGCAACTATTTCA+AGG | - | chr3.1:82029794-82029813 | MS.gene32842:intron | 45.0% | |
| CCTTGACATGTAGGTCTTGA+TGG | - | chr3.1:82030425-82030444 | MS.gene32842:intron | 45.0% | |
| CTCCGAGAACTCAGTTTCAA+TGG | - | chr3.1:82031860-82031879 | MS.gene32842:intron | 45.0% | |
| CTGTGACTGTGACCATACAT+GGG | + | chr3.1:82031710-82031729 | None:intergenic | 45.0% | |
| GCAAAGGGTCGTTGTATCTT+AGG | - | chr3.1:82029697-82029716 | MS.gene32842:intron | 45.0% | |
| TATCTTAGGCCACTGCTCTT+AGG | - | chr3.1:82029711-82029730 | MS.gene32842:intron | 45.0% | |
| TCTCAGAGTTCTCCCATGTA+TGG | - | chr3.1:82031695-82031714 | MS.gene32842:CDS | 45.0% | |
| TCTGTGACTGTGACCATACA+TGG | + | chr3.1:82031711-82031730 | None:intergenic | 45.0% | |
| TGCTCTAGCAAACAAGCGTT+GGG | - | chr3.1:82029536-82029555 | MS.gene32842:CDS | 45.0% | |
| TGGTATGTGATACTCCCTAC+AGG | + | chr3.1:82032283-82032302 | None:intergenic | 45.0% | |
| TGTGCATGCTCTAACTGATC+TGG | - | chr3.1:82030889-82030908 | MS.gene32842:intron | 45.0% | |
| TTCTGTACAGGAACTGCTGT+CGG | - | chr3.1:82032250-82032269 | MS.gene32842:CDS | 45.0% | |
| ! | AGCCAGAGGTTCTGATGATA+GGG | - | chr3.1:82030724-82030743 | MS.gene32842:intron | 45.0% |
| ! | AGTATGGTTCCATTGATGGC+AGG | + | chr3.1:82031008-82031027 | None:intergenic | 45.0% |
| ! | CACTGATTGCCTTGACATGT+AGG | - | chr3.1:82030416-82030435 | MS.gene32842:intron | 45.0% |
| ! | GAACAGGGGAAGCATATATG+AGG | + | chr3.1:82029782-82029801 | None:intergenic | 45.0% |
| ! | GTTAAGTTGCGGTGAATTCG+AGG | + | chr3.1:82031935-82031954 | None:intergenic | 45.0% |
| ! | TAAGACCAAATCGGTTCAGG+TGG | - | chr3.1:82032180-82032199 | MS.gene32842:CDS | 45.0% |
| ! | TGCCAGTGATTTGGGTTATC+AGG | - | chr3.1:82031061-82031080 | MS.gene32842:intron | 45.0% |
| ! | TGCTAGAGCAGTTTGCTTCA+AGG | + | chr3.1:82029526-82029545 | None:intergenic | 45.0% |
| !! | ATTGATGGCAGGCGTTGAAA+TGG | + | chr3.1:82030997-82031016 | None:intergenic | 45.0% |
| !! | CGCGCCACTTAATTTGTATG+TGG | - | chr3.1:82029934-82029953 | MS.gene32842:CDS | 45.0% |
| !! | TGCAGGGTGGACTATAAAAC+AGG | - | chr3.1:82032620-82032639 | MS.gene32842:intron | 45.0% |
| !!! | GCCTAGTTTTACTTGGTGCA+TGG | - | chr3.1:82030075-82030094 | MS.gene32842:intron | 45.0% |
| AAGTGGTCCGGTTCTTGGTT+TGG | - | chr3.1:82029734-82029753 | MS.gene32842:intron | 50.0% | |
| ACTGCTCTTAGGAAGTGGTC+CGG | - | chr3.1:82029722-82029741 | MS.gene32842:intron | 50.0% | |
| AGATACAACGACCCTTTGCC+CGG | + | chr3.1:82029696-82029715 | None:intergenic | 50.0% | |
| AGTTCTCGGAGCGTGAGATT+GGG | + | chr3.1:82031851-82031870 | None:intergenic | 50.0% | |
| CAGGAAAACTTGGACTCGTG+AGG | + | chr3.1:82032578-82032597 | None:intergenic | 50.0% | |
| CTCTTCCACCTGAACCGATT+TGG | + | chr3.1:82032188-82032207 | None:intergenic | 50.0% | |
| CTGCTCTAGCAAACAAGCGT+TGG | - | chr3.1:82029535-82029554 | MS.gene32842:CDS | 50.0% | |
| GTTGCGGTGAATTCGAGGTT+AGG | + | chr3.1:82031930-82031949 | None:intergenic | 50.0% | |
| TGCTGTGGATGAATTGACCG+AGG | - | chr3.1:82032216-82032235 | MS.gene32842:CDS | 50.0% | |
| TTAGGAAGTGGTCCGGTTCT+TGG | - | chr3.1:82029729-82029748 | MS.gene32842:intron | 50.0% | |
| ! | GAGCCAGAGGTTCTGATGAT+AGG | - | chr3.1:82030723-82030742 | MS.gene32842:intron | 50.0% |
| AGGCCACTGCTCTTAGGAAG+TGG | - | chr3.1:82029717-82029736 | MS.gene32842:intron | 55.0% | |
| CACAGACTCGCAGTCACAAC+TGG | - | chr3.1:82031725-82031744 | MS.gene32842:CDS | 55.0% | |
| GAGTTCTCGGAGCGTGAGAT+TGG | + | chr3.1:82031852-82031871 | None:intergenic | 55.0% | |
| GCTGGAGCCAAACCAAGAAC+CGG | + | chr3.1:82029744-82029763 | None:intergenic | 55.0% | |
| GGACCACTTCCTAAGAGCAG+TGG | + | chr3.1:82029723-82029742 | None:intergenic | 55.0% | |
| TTTGACCGTGCTTCGCAACG+CGG | - | chr3.1:82029965-82029984 | MS.gene32842:CDS | 55.0% | |
| !! | CTGTCGGTGTTGCTCCTGTA+GGG | - | chr3.1:82032266-82032285 | MS.gene32842:intron | 55.0% |
| AGGTTCCTCCACCGGGCAAA+GGG | - | chr3.1:82029682-82029701 | MS.gene32842:intron | 60.0% | |
| TACAACGACCCTTTGCCCGG+TGG | + | chr3.1:82029693-82029712 | None:intergenic | 60.0% | |
| TAGGTTCCTCCACCGGGCAA+AGG | - | chr3.1:82029681-82029700 | MS.gene32842:intron | 60.0% | |
| TTGACCGTGCTTCGCAACGC+GGG | - | chr3.1:82029966-82029985 | MS.gene32842:CDS | 60.0% | |
| TTGGACTCGTGAGGCACGTC+CGG | + | chr3.1:82032569-82032588 | None:intergenic | 60.0% | |
| ! | GGAAGAGCGCGTTGTTGCTG+TGG | - | chr3.1:82032201-82032220 | MS.gene32842:CDS | 60.0% |
| !! | GCTGTCGGTGTTGCTCCTGT+AGG | - | chr3.1:82032265-82032284 | MS.gene32842:intron | 60.0% |
| AACGACCCTTTGCCCGGTGG+AGG | + | chr3.1:82029690-82029709 | None:intergenic | 65.0% | |
| CAGTCCCGCGTTGCGAAGCA+CGG | + | chr3.1:82029973-82029992 | None:intergenic | 65.0% | |
| TGGACTCGTGAGGCACGTCC+GGG | + | chr3.1:82032568-82032587 | None:intergenic | 65.0% | |
| CGTGCTTCGCAACGCGGGAC+TGG | - | chr3.1:82029971-82029990 | MS.gene32842:CDS | 70.0% | |
| GGACTCGTGAGGCACGTCCG+GGG | + | chr3.1:82032567-82032586 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 82029462 | 82032739 | 82029462 | ID=MS.gene32842 |
| chr3.1 | mRNA | 82029462 | 82032739 | 82029462 | ID=MS.gene32842.t1;Parent=MS.gene32842 |
| chr3.1 | exon | 82032644 | 82032739 | 82032644 | ID=MS.gene32842.t1.exon1;Parent=MS.gene32842.t1 |
| chr3.1 | CDS | 82032644 | 82032739 | 82032644 | ID=cds.MS.gene32842.t1;Parent=MS.gene32842.t1 |
| chr3.1 | exon | 82032386 | 82032517 | 82032386 | ID=MS.gene32842.t1.exon2;Parent=MS.gene32842.t1 |
| chr3.1 | CDS | 82032386 | 82032517 | 82032386 | ID=cds.MS.gene32842.t1;Parent=MS.gene32842.t1 |
| chr3.1 | exon | 82032177 | 82032275 | 82032177 | ID=MS.gene32842.t1.exon3;Parent=MS.gene32842.t1 |
| chr3.1 | CDS | 82032177 | 82032275 | 82032177 | ID=cds.MS.gene32842.t1;Parent=MS.gene32842.t1 |
| chr3.1 | exon | 82031647 | 82031763 | 82031647 | ID=MS.gene32842.t1.exon4;Parent=MS.gene32842.t1 |
| chr3.1 | CDS | 82031647 | 82031763 | 82031647 | ID=cds.MS.gene32842.t1;Parent=MS.gene32842.t1 |
| chr3.1 | exon | 82031119 | 82031214 | 82031119 | ID=MS.gene32842.t1.exon5;Parent=MS.gene32842.t1 |
| chr3.1 | CDS | 82031119 | 82031214 | 82031119 | ID=cds.MS.gene32842.t1;Parent=MS.gene32842.t1 |
| chr3.1 | exon | 82029890 | 82030002 | 82029890 | ID=MS.gene32842.t1.exon6;Parent=MS.gene32842.t1 |
| chr3.1 | CDS | 82029890 | 82030002 | 82029890 | ID=cds.MS.gene32842.t1;Parent=MS.gene32842.t1 |
| chr3.1 | exon | 82029462 | 82029576 | 82029462 | ID=MS.gene32842.t1.exon7;Parent=MS.gene32842.t1 |
| chr3.1 | CDS | 82029462 | 82029576 | 82029462 | ID=cds.MS.gene32842.t1;Parent=MS.gene32842.t1 |
| Gene Sequence |
| Protein sequence |
