AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05726


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05726.t1 MTR_3g464580 99.643 561 2 0 6 566 26 586 0.0 1170
MS.gene05726.t1 MTR_3g464580 99.587 484 2 0 6 489 26 509 0.0 1013
MS.gene05726.t1 MTR_5g071360 86.096 561 76 2 6 566 26 584 0.0 1011
MS.gene05726.t1 MTR_5g071360 87.654 486 59 1 6 491 26 510 0.0 902
MS.gene05726.t1 MTR_3g464580 98.357 426 6 1 6 431 26 450 0.0 876
MS.gene05726.t1 MTR_3g087220 75.327 535 131 1 6 540 26 559 0.0 874
MS.gene05726.t1 MTR_5g069310 76.224 143 33 1 424 566 2 143 1.74e-70 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05726.t1 AT3G47340 81.495 562 100 3 6 566 26 584 0.0 971
MS.gene05726.t1 AT5G10240 78.868 530 111 1 6 535 26 554 0.0 902
MS.gene05726.t1 AT5G65010 78.327 526 113 1 6 531 26 550 0.0 894
MS.gene05726.t1 AT5G10240 78.302 530 113 2 6 535 26 553 0.0 892
MS.gene05726.t1 AT5G65010 78.368 527 112 2 6 531 26 551 0.0 891
MS.gene05726.t1 AT3G47340 84.091 484 76 1 6 489 26 508 0.0 876
MS.gene05726.t1 AT3G47340 83.715 393 63 1 6 398 26 417 0.0 713
MS.gene05726.t1 AT3G47340 84.158 303 47 1 96 398 1 302 0.0 550

Find 130 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGCGTATGTTGATTTAT+TGG 0.205283 3.1:+48507676 None:intergenic
CTTCTTTGTTTGGTGCCTTA+TGG 0.206839 3.1:+48507864 None:intergenic
TGAATTTCAGTTTACTATTC+AGG 0.209606 3.1:-48508656 MS.gene05726:intron
TGGATTGCATCAGAATTAAA+AGG 0.220309 3.1:-48509320 MS.gene05726:CDS
GGAGTCAAATGGGTGATTTC+TGG 0.221522 3.1:-48507926 MS.gene05726:CDS
TCTATAGTAATATGCTTCTT+TGG 0.249070 3.1:+48507072 None:intergenic
AGATTAGAAATTTCCATCTT+TGG 0.261394 3.1:+48506677 None:intergenic
CACTTCCTTGTATATTGGTT+GGG 0.269696 3.1:-48509453 MS.gene05726:CDS
CTTCTCTGGCTCTACAGTTT+TGG 0.272062 3.1:+48506706 None:intergenic
GCCATTGTTGATCCTGCTTC+TGG 0.280821 3.1:-48509934 MS.gene05726:CDS
CCAACATGGTGATAACTATT+TGG 0.283627 3.1:-48509971 MS.gene05726:CDS
TTACCTTGCGGCATGTTTCT+TGG 0.286349 3.1:+48507834 None:intergenic
TGGTTGGATTGATGGTATTA+AGG 0.289578 3.1:-48507264 MS.gene05726:CDS
CTATTGAGTGGGATGCTTCT+TGG 0.291336 3.1:-48506808 MS.gene05726:CDS
AAGATGGAAATTTCTAATCT+TGG 0.303255 3.1:-48506674 MS.gene05726:CDS
TCAAGCAACCTTGATCCTTC+TGG 0.306690 3.1:-48506785 MS.gene05726:CDS
ATTGTTTCCTGAGGTCTTCA+TGG 0.316641 3.1:+48509747 None:intergenic
GATTACAGGCTGTGATAAAA+AGG 0.326265 3.1:-48508999 MS.gene05726:intron
TGGTGAAACTCTTCTTTGTT+TGG 0.329318 3.1:+48507854 None:intergenic
TTATGTTAGTATGAGGAGTA+TGG 0.338204 3.1:-48509572 MS.gene05726:intron
TGGAGGTTTGGATTCTTCAT+TGG 0.339121 3.1:-48508941 MS.gene05726:CDS
TCGGCAAGACTAACGGTTCC+TGG 0.359524 3.1:-48506863 MS.gene05726:CDS
CTACTTCTCTTCCGGCCTTA+AGG 0.361914 3.1:+48508704 None:intergenic
ATCTTTGGTATAATCTTCTC+TGG 0.371278 3.1:+48506692 None:intergenic
TTGTTATTGTAGGTTCTGTT+TGG 0.373539 3.1:-48509340 MS.gene05726:intron
GTTGGCTATGGTTGGATTGA+TGG 0.373548 3.1:-48507272 MS.gene05726:CDS
CATTGATCCTGAGTACAAAA+TGG 0.374006 3.1:-48507597 MS.gene05726:intron
GGTGTCACTTCCTTGTATAT+TGG 0.374064 3.1:-48509458 MS.gene05726:CDS
CTCATTCTGTGTAGGACTTA+AGG 0.378447 3.1:-48508851 MS.gene05726:intron
TATCATAAAATTCAGGTGAA+TGG 0.381079 3.1:-48509782 MS.gene05726:intron
TATATTGGTTGGGGACTAGA+TGG 0.381949 3.1:-48509443 MS.gene05726:intron
CACAAAAGCTGCTAAGCAAT+GGG 0.391623 3.1:-48508887 MS.gene05726:CDS
AAAGTCTGCTACTTCTCTTC+CGG 0.398299 3.1:+48508696 None:intergenic
CCTTCTGGAAGAGCAGCATT+TGG 0.406608 3.1:-48506770 MS.gene05726:CDS
TGTGTACGGAATTTGTGATT+AGG 0.411870 3.1:+48509722 None:intergenic
CATATGATGTAACCACAATC+AGG 0.412177 3.1:-48507994 MS.gene05726:CDS
TCAAATCATCAGGAGTCAAA+TGG 0.416775 3.1:-48507937 MS.gene05726:CDS
CTCAAAACAAGAGGATCATA+AGG 0.417430 3.1:+48509173 None:intergenic
TCACTTCCTTGTATATTGGT+TGG 0.418456 3.1:-48509454 MS.gene05726:CDS
TGCAGATTAAAGCTCTTCAT+AGG 0.424217 3.1:-48507715 MS.gene05726:intron
TGGTGGAGCCCACTCCAGTC+TGG 0.424835 3.1:+48509991 None:intergenic
TTAGGGTGCACCTGACCTTA+AGG 0.431886 3.1:-48508719 MS.gene05726:intron
AGAGAAGATTATACCAAAGA+TGG 0.434916 3.1:-48506690 MS.gene05726:CDS
AGAGGATCATAAGGGGTTGT+TGG 0.435604 3.1:+48509182 None:intergenic
AAGAAGGAAGAATTGAGAAA+TGG 0.439977 3.1:-48507478 MS.gene05726:CDS
AGGGTATTTGTATTTCCATA+AGG 0.443024 3.1:-48507879 MS.gene05726:CDS
TCTCTTCCGGCCTTAAGGTC+AGG 0.447008 3.1:+48508709 None:intergenic
ACTTCCTTGTATATTGGTTG+GGG 0.453902 3.1:-48509452 MS.gene05726:CDS
TTGAGTACCTTAGGAAGGTA+AGG 0.458332 3.1:+48507422 None:intergenic
TGTCTCATATTAGCTTTGAA+TGG 0.461591 3.1:+48506646 None:intergenic
TCAAAACAAGAGGATCATAA+GGG 0.462003 3.1:+48509174 None:intergenic
GAATTGAGAAATGGATACTA+AGG 0.475694 3.1:-48507469 MS.gene05726:CDS
TAATATGCTTCTTTGGTAAG+TGG 0.476674 3.1:+48507079 None:intergenic
TCTCGAAAGATCAAATCATC+AGG 0.483191 3.1:-48507947 MS.gene05726:CDS
TGAAGCACCGTGGTCCAGAC+TGG 0.485903 3.1:-48510005 MS.gene05726:CDS
CTGTGATGTTATTGCACACC+TGG 0.486927 3.1:-48509693 MS.gene05726:intron
GTTCAGATAAAACATGAAGA+AGG 0.489085 3.1:-48507494 MS.gene05726:intron
GCACAAAAGCTGCTAAGCAA+TGG 0.493861 3.1:-48508888 MS.gene05726:CDS
CAAATCATCAGGAGTCAAAT+GGG 0.497991 3.1:-48507936 MS.gene05726:CDS
TTGGTAAGTGGAGTGTTGAA+AGG 0.504831 3.1:+48507091 None:intergenic
CTGCTCTTCCAGAAGGATCA+AGG 0.507380 3.1:+48506777 None:intergenic
ATTGTTGCGAGGGATGCTAT+AGG 0.511574 3.1:-48509479 MS.gene05726:CDS
AAGACCGGGAGTTTCGTAGA+TGG 0.513657 3.1:-48509238 MS.gene05726:CDS
GGATTGCATCAGAATTAAAA+GGG 0.514030 3.1:-48509319 MS.gene05726:CDS
GTGATGGAGTTGGCTATGGT+TGG 0.516816 3.1:-48507280 MS.gene05726:CDS
CTGATGACTCACAAGCTAAG+AGG 0.518775 3.1:-48511211 MS.gene05726:CDS
GGATGGCATAGATGCAATAG+AGG 0.521917 3.1:-48508038 MS.gene05726:CDS
TTCAGTGATGGAGTTGGCTA+TGG 0.523214 3.1:-48507284 MS.gene05726:CDS
AGAGGTTGATCACCAGAAGC+AGG 0.531123 3.1:+48509922 None:intergenic
ATAACTATTTGGCTCATCAA+AGG 0.533219 3.1:-48509960 MS.gene05726:CDS
ACTTGTACTCGAGCAAAGAC+CGG 0.535273 3.1:-48509253 MS.gene05726:CDS
CTTGTACTCGAGCAAAGACC+GGG 0.536345 3.1:-48509252 MS.gene05726:CDS
CAACAGTTTCATTGTTGCGA+GGG 0.541209 3.1:-48509489 MS.gene05726:CDS
AGCAGTCACTGCTAGATACC+TGG 0.543495 3.1:-48508914 MS.gene05726:CDS
TAGTAAACTGAAATTCATGA+TGG 0.544517 3.1:+48508662 None:intergenic
TCTACAACCATGAAGACCTC+AGG 0.544557 3.1:-48509754 MS.gene05726:CDS
AATAGTTATCACCATGTTGG+TGG 0.545301 3.1:+48509974 None:intergenic
CAATAAATCAACATACGCAT+GGG 0.548801 3.1:-48507675 MS.gene05726:CDS
AAATGGGTGATTTCTGGAGA+AGG 0.550290 3.1:-48507920 MS.gene05726:CDS
ACCGTGGTCCAGACTGGAGT+GGG 0.551709 3.1:-48509999 MS.gene05726:CDS
CAGAAGGAACAGTTCAGTGA+TGG 0.554559 3.1:-48507296 MS.gene05726:CDS
CCAATAAATCAACATACGCA+TGG 0.555802 3.1:-48507676 MS.gene05726:CDS
AGGTGTGGCTGCCCTGATTG+TGG 0.560066 3.1:+48507982 None:intergenic
CCAAATGCTGCTCTTCCAGA+AGG 0.561506 3.1:+48506770 None:intergenic
AAATTACACTCATTCTGTGT+AGG 0.565107 3.1:-48508859 MS.gene05726:CDS
GGATTTCATCAAAGTTGCAA+TGG 0.568271 3.1:-48507621 MS.gene05726:CDS
AGAGAATCCTTACCTTCCTA+AGG 0.568467 3.1:-48507429 MS.gene05726:intron
TTTCGAGACATCAGAAACAT+AGG 0.569570 3.1:+48507962 None:intergenic
TGTGAATCTTACCTTCTCAA+AGG 0.571655 3.1:+48509145 None:intergenic
CATCACAGTCACATTGTGTA+CGG 0.573999 3.1:+48509708 None:intergenic
TGATGACTCACAAGCTAAGA+GGG 0.575223 3.1:-48511210 MS.gene05726:intron
TTTGAGGAACGCCTTTGAGA+AGG 0.583912 3.1:-48509156 MS.gene05726:intron
ACTATAGAATGATCTTTGAG+AGG 0.584236 3.1:-48507057 MS.gene05726:CDS
GTAGAACTCGGCAAGACTAA+CGG 0.589213 3.1:-48506870 MS.gene05726:intron
CATGCAACACTAGCTCCTCC+AGG 0.589828 3.1:+48506845 None:intergenic
TAGTCCCCAACCAATATACA+AGG 0.591895 3.1:+48509448 None:intergenic
GAACAGTTCAGTGATGGAGT+TGG 0.592459 3.1:-48507290 MS.gene05726:CDS
GGTGCACCTGACCTTAAGGC+CGG 0.595098 3.1:-48508715 MS.gene05726:CDS
TTGATGACTGATGTGCCGTT+CGG 0.596910 3.1:-48508976 MS.gene05726:CDS
TAGAGTTGAGTACCTTAGGA+AGG 0.599420 3.1:+48507417 None:intergenic
CCAAATAGTTATCACCATGT+TGG 0.601085 3.1:+48509971 None:intergenic
CACAGAGAAAGCTATTGAGT+GGG 0.608617 3.1:-48506819 MS.gene05726:CDS
GCACAGAGAAAGCTATTGAG+TGG 0.609213 3.1:-48506820 MS.gene05726:CDS
GATTTGTCTTCATTGAAGAG+AGG 0.610358 3.1:+48509904 None:intergenic
CACCGTGGTCCAGACTGGAG+TGG 0.611314 3.1:-48510000 MS.gene05726:CDS
AGACAAATCTATTATTGTCA+CGG 0.614131 3.1:-48509890 MS.gene05726:intron
TGTACCATCTACGAAACTCC+CGG 0.614554 3.1:+48509234 None:intergenic
GATTAGGCAATTGTTTCCTG+AGG 0.616657 3.1:+48509738 None:intergenic
TGAGAAATGGATACTAAGGA+AGG 0.617704 3.1:-48507465 MS.gene05726:CDS
GTCACTGCTAGATACCTGGC+TGG 0.621089 3.1:-48508910 MS.gene05726:CDS
ATATGATGTAACCACAATCA+GGG 0.627367 3.1:-48507993 MS.gene05726:CDS
AAGGCGTTCCTCAAAACAAG+AGG 0.630369 3.1:+48509164 None:intergenic
GCCCACTCCAGTCTGGACCA+CGG 0.634064 3.1:+48509998 None:intergenic
ACAACAGTTTCATTGTTGCG+AGG 0.640177 3.1:-48509490 MS.gene05726:CDS
TGGAGTGGGCTCCACCAACA+TGG 0.641715 3.1:-48509985 MS.gene05726:CDS
TTGCTCGAGTACAAGTGACC+AGG 0.642279 3.1:+48509260 None:intergenic
CCAGATAGTAAAACACCGAA+CGG 0.643802 3.1:+48508961 None:intergenic
CTCGAGTACAAGTGACCAGG+TGG 0.647322 3.1:+48509263 None:intergenic
CAATCCTCCGTGGTTCAATG+AGG 0.649428 3.1:-48509213 MS.gene05726:CDS
TCACCAAGAAACATGCCGCA+AGG 0.655836 3.1:-48507837 MS.gene05726:intron
CAAAACAAGAGGATCATAAG+GGG 0.657549 3.1:+48509175 None:intergenic
ACCAGAAGCAGGATCAACAA+TGG 0.667593 3.1:+48509933 None:intergenic
ACAAAAGCTGCTAAGCAATG+GGG 0.694915 3.1:-48508886 MS.gene05726:CDS
AGACATCAGAAACATAGGTG+TGG 0.696093 3.1:+48507967 None:intergenic
GTAGATGGTACAATCCTCCG+TGG 0.707926 3.1:-48509223 MS.gene05726:CDS
AATAAATCAACATACGCATG+GGG 0.713947 3.1:-48507674 MS.gene05726:CDS
ATAACAGCCTCATTGAACCA+CGG 0.715208 3.1:+48509206 None:intergenic
GCAAGACTAACGGTTCCTGG+AGG 0.731795 3.1:-48506860 MS.gene05726:CDS
ACAGCCTCATTGAACCACGG+AGG 0.790372 3.1:+48509209 None:intergenic
TGTCACAGATTGAAGCACCG+TGG 0.798262 3.1:-48510015 MS.gene05726:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAACATTCATTTA+AGG - chr3.1:48509083-48509102 MS.gene05726:intron 10.0%
!! AATAAAAAATAAAAAACTCT+AGG + chr3.1:48506846-48506865 None:intergenic 10.0%
!! ATATAATTATCCATTTATAT+TGG - chr3.1:48507298-48507317 MS.gene05726:CDS 10.0%
!! TAATAATTAATAAGTAACTT+TGG - chr3.1:48507774-48507793 MS.gene05726:intron 10.0%
!! TATAATTATCCATTTATATT+GGG - chr3.1:48507299-48507318 MS.gene05726:CDS 10.0%
!!! ATTCTTTATTAAATATTTTG+TGG - chr3.1:48509794-48509813 MS.gene05726:intron 10.0%
!!! TAAATTTTATCATAAAATTC+AGG - chr3.1:48508074-48508093 MS.gene05726:intron 10.0%
!!! TATAATTCTCTTTAAAATAT+TGG + chr3.1:48507264-48507283 None:intergenic 10.0%
!!! TTTTTTATTTTTGTATTTTG+TGG - chr3.1:48506857-48506876 MS.gene05726:CDS 10.0%
!! AACACTAATTAATACATATA+TGG - chr3.1:48507051-48507070 MS.gene05726:CDS 15.0%
!! ATAAACTATAGAATATTACT+AGG + chr3.1:48508010-48508029 None:intergenic 15.0%
!! CAAATTAAATTTGCAAATTA+TGG + chr3.1:48510497-48510516 None:intergenic 15.0%
!! GGATTATTAAAAAAATTCAA+TGG - chr3.1:48509059-48509078 MS.gene05726:intron 15.0%
!! TAAACTATAGAATATTACTA+GGG + chr3.1:48508009-48508028 None:intergenic 15.0%
!! TATATGGCTATAATATAATA+TGG - chr3.1:48507067-48507086 MS.gene05726:CDS 15.0%
!!! AAAATATTTTGGTTTTAAGA+GGG - chr3.1:48506998-48507017 MS.gene05726:intron 15.0%
!!! AAAGGGTATATTTATATAAA+AGG + chr3.1:48506749-48506768 None:intergenic 15.0%
!!! ATTAGCAATGTTTTAAATAA+AGG + chr3.1:48508235-48508254 None:intergenic 15.0%
!!! ATTGCTTTAATCTTTATTTA+TGG - chr3.1:48509113-48509132 MS.gene05726:intron 15.0%
!!! TAAGCAAAATTCTATTTTTT+AGG - chr3.1:48507373-48507392 MS.gene05726:intron 15.0%
!!! TAAGCAAAATTTTACTTTTT+AGG + chr3.1:48507462-48507481 None:intergenic 15.0%
!!! TAATTCTTACATTTTTAAGT+CGG - chr3.1:48508791-48508810 MS.gene05726:intron 15.0%
!!! TGGTTTTTTATTTTTTTCAA+TGG + chr3.1:48507240-48507259 None:intergenic 15.0%
!!! TTATTTTTTATGTTAGTATG+AGG - chr3.1:48508284-48508303 MS.gene05726:intron 15.0%
!!! TTTATATAAATATACCCTTT+TGG - chr3.1:48506749-48506768 MS.gene05726:CDS 15.0%
!!! TTTATTTTAATAAATCACGT+GGG - chr3.1:48507709-48507728 MS.gene05726:CDS 15.0%
!!! TTTTATTTTAATAAATCACG+TGG - chr3.1:48507708-48507727 MS.gene05726:CDS 15.0%
!! AAAATAAAAATTCCACATGT+AGG + chr3.1:48507697-48507716 None:intergenic 20.0%
!! AAATATCAAAGTTAACCAAA+AGG + chr3.1:48506767-48506786 None:intergenic 20.0%
!! AATAAACAAAAGTAAGACAT+GGG - chr3.1:48507590-48507609 MS.gene05726:intron 20.0%
!! AATATCAAAGTTAACCAAAA+GGG + chr3.1:48506766-48506785 None:intergenic 20.0%
!! CAACAAAAGTAAAATGAAAT+TGG + chr3.1:48510668-48510687 None:intergenic 20.0%
!! TACTAGAAAAATCACAAAAA+TGG - chr3.1:48507139-48507158 MS.gene05726:intron 20.0%
!! TGCTATATAGTATAATAAAG+TGG - chr3.1:48508041-48508060 MS.gene05726:intron 20.0%
!!! AATGGAAGTTCAAAATATTT+TGG - chr3.1:48506987-48507006 MS.gene05726:intron 20.0%
!!! ACATTTTTTATGATACCATA+GGG - chr3.1:48509756-48509775 MS.gene05726:CDS 20.0%
!!! ATTCTCTTTAAAATATTGGA+TGG + chr3.1:48507260-48507279 None:intergenic 20.0%
!!! CAAAATATTTTGGTTTTAAG+AGG - chr3.1:48506997-48507016 MS.gene05726:intron 20.0%
!!! GAATGAAAAATCAATTTTAG+TGG - chr3.1:48509038-48509057 MS.gene05726:intron 20.0%
!!! GAGTTTTTATTATATTGATG+AGG - chr3.1:48506954-48506973 MS.gene05726:intron 20.0%
!!! TATTTATGGTATGTTGATTA+GGG - chr3.1:48509127-48509146 MS.gene05726:intron 20.0%
!!! TGTTATTTTGATGCAATAAT+TGG - chr3.1:48507620-48507639 MS.gene05726:CDS 20.0%
!!! TTATTTATGGTATGTTGATT+AGG - chr3.1:48509126-48509145 MS.gene05726:intron 20.0%
!!! TTCTTGAAATTTTTTCGTAT+AGG - chr3.1:48510711-48510730 MS.gene05726:intron 20.0%
!!! TTTTTTCAATGGCAAAATAT+TGG + chr3.1:48507229-48507248 None:intergenic 20.0%
! AAGATGGAAATTTCTAATCT+TGG - chr3.1:48511189-48511208 MS.gene05726:intron 25.0%
! ACAACTAAAAGATAAGCATT+GGG + chr3.1:48507326-48507345 None:intergenic 25.0%
! ACCAAAATCAATAACATTCA+TGG + chr3.1:48508265-48508284 None:intergenic 25.0%
! AGACAAATCTATTATTGTCA+CGG - chr3.1:48507973-48507992 MS.gene05726:CDS 25.0%
! AGATTAGAAATTTCCATCTT+TGG + chr3.1:48511189-48511208 None:intergenic 25.0%
! ATAAAAAACTCTAGGTAAAG+AGG + chr3.1:48506838-48506857 None:intergenic 25.0%
! ATAAACAAAAGTAAGACATG+GGG - chr3.1:48507591-48507610 MS.gene05726:intron 25.0%
! ATTTGATTAGGCCTTTATTA+AGG + chr3.1:48510957-48510976 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr3.1:48507398-48507417 MS.gene05726:intron 25.0%
! GAATAAACAAAAGTAAGACA+TGG - chr3.1:48507589-48507608 MS.gene05726:intron 25.0%
! GATAAGTGATATACAAGTAA+AGG - chr3.1:48507115-48507134 MS.gene05726:CDS 25.0%
! GATGTATGTAGTCTATTTAA+TGG + chr3.1:48507425-48507444 None:intergenic 25.0%
! TACAACTAAAAGATAAGCAT+TGG + chr3.1:48507327-48507346 None:intergenic 25.0%
! TAGACAAATACTATTTGAAG+TGG + chr3.1:48509632-48509651 None:intergenic 25.0%
! TAGTAAACTGAAATTCATGA+TGG + chr3.1:48509204-48509223 None:intergenic 25.0%
! TATCATAAAATTCAGGTGAA+TGG - chr3.1:48508081-48508100 MS.gene05726:intron 25.0%
! TATTGCATCAAAATAACATG+TGG + chr3.1:48507618-48507637 None:intergenic 25.0%
! TCTATAGTAATATGCTTCTT+TGG + chr3.1:48510794-48510813 None:intergenic 25.0%
! TGAATTTCAGTTTACTATTC+AGG - chr3.1:48509207-48509226 MS.gene05726:CDS 25.0%
! TTGAAGGAAAAAAAATGAAG+TGG - chr3.1:48510077-48510096 MS.gene05726:intron 25.0%
!! ATTTTGCTTATAATAGTGAC+CGG - chr3.1:48507472-48507491 MS.gene05726:CDS 25.0%
!! ATTTTGCTTATAATAGTGAC+CGG + chr3.1:48507491-48507472 None:intergenic 25.0%
!! ATTTTTATAACAATGTCGCT+TGG + chr3.1:48510875-48510894 None:intergenic 25.0%
!! TGAATAATTTGTGACAAGTT+TGG - chr3.1:48508493-48508512 MS.gene05726:intron 25.0%
!! TTTTGATGCAATAATTGGTT+CGG - chr3.1:48507625-48507644 MS.gene05726:CDS 25.0%
!!! AAATTAATTTGTCCTACATG+TGG - chr3.1:48507682-48507701 MS.gene05726:CDS 25.0%
!!! ACCATGAATGTTATTGATTT+TGG - chr3.1:48508261-48508280 MS.gene05726:intron 25.0%
!!! CACATTTTTTATGATACCAT+AGG - chr3.1:48509755-48509774 MS.gene05726:CDS 25.0%
!!! CATTTTTTATGATACCATAG+GGG - chr3.1:48509757-48509776 MS.gene05726:CDS 25.0%
!!! TCTTTTTCGTTGATTTTGTT+GGG + chr3.1:48507658-48507677 None:intergenic 25.0%
!!! TTCATTTTACTTTTGTTGCA+AGG - chr3.1:48510670-48510689 MS.gene05726:intron 25.0%
AAACATACTTGACTTTGACA+AGG - chr3.1:48507516-48507535 MS.gene05726:intron 30.0%
AAATTACACTCATTCTGTGT+AGG - chr3.1:48509004-48509023 MS.gene05726:intron 30.0%
AAGAAGGAAGAATTGAGAAA+TGG - chr3.1:48510385-48510404 MS.gene05726:intron 30.0%
AATAAATCAACATACGCATG+GGG - chr3.1:48510189-48510208 MS.gene05726:intron 30.0%
ACTATAGAATGATCTTTGAG+AGG - chr3.1:48510806-48510825 MS.gene05726:intron 30.0%
AGAGAAGATTATACCAAAGA+TGG - chr3.1:48511173-48511192 MS.gene05726:intron 30.0%
AGTAGTTGAGATTGATATCA+AGG - chr3.1:48506896-48506915 MS.gene05726:intron 30.0%
ATATGATGTAACCACAATCA+GGG - chr3.1:48509870-48509889 MS.gene05726:intron 30.0%
ATCTTTGGTATAATCTTCTC+TGG + chr3.1:48511174-48511193 None:intergenic 30.0%
ATGAAATCCTTGTCCAAAAA+TGG + chr3.1:48510231-48510250 None:intergenic 30.0%
CAATAAATCAACATACGCAT+GGG - chr3.1:48510188-48510207 MS.gene05726:intron 30.0%
CATCAAAAACATTGATGTCA+TGG - chr3.1:48509586-48509605 MS.gene05726:intron 30.0%
GAATTGAGAAATGGATACTA+AGG - chr3.1:48510394-48510413 MS.gene05726:intron 30.0%
GCCTTTATTAAGGTTATGTT+GGG + chr3.1:48510947-48510966 None:intergenic 30.0%
GGATTGCATCAGAATTAAAA+GGG - chr3.1:48508544-48508563 MS.gene05726:intron 30.0%
GTTCAGATAAAACATGAAGA+AGG - chr3.1:48510369-48510388 MS.gene05726:intron 30.0%
TAATATGCTTCTTTGGTAAG+TGG + chr3.1:48510787-48510806 None:intergenic 30.0%
TCAAAACAAGAGGATCATAA+GGG + chr3.1:48508692-48508711 None:intergenic 30.0%
TCAAAATTGCGAAAAGATGT+GGG - chr3.1:48509262-48509281 MS.gene05726:CDS 30.0%
TCACTATGACATTTAATACG+AGG + chr3.1:48507184-48507203 None:intergenic 30.0%
TCCCAACATAACCTTAATAA+AGG - chr3.1:48510943-48510962 MS.gene05726:intron 30.0%
TGATTGATTAAGTTACCTGA+GGG + chr3.1:48510837-48510856 None:intergenic 30.0%
TGGACTTTATGTATATGAAC+AGG + chr3.1:48507747-48507766 None:intergenic 30.0%
TGGATTGCATCAGAATTAAA+AGG - chr3.1:48508543-48508562 MS.gene05726:intron 30.0%
TTATGTTAGTATGAGGAGTA+TGG - chr3.1:48508291-48508310 MS.gene05726:intron 30.0%
TTGATTGATTAAGTTACCTG+AGG + chr3.1:48510838-48510857 None:intergenic 30.0%
TTTGTGGTTTAGAAGTTCAT+GGG - chr3.1:48506873-48506892 MS.gene05726:intron 30.0%
! AAATATTTTGTGGTCTATGC+AGG - chr3.1:48509804-48509823 MS.gene05726:intron 30.0%
! AATGTAGTTCTATTACCTTG+CGG + chr3.1:48510044-48510063 None:intergenic 30.0%
! AGAAAATTTTGTGGACATGT+TGG - chr3.1:48508314-48508333 MS.gene05726:intron 30.0%
! AGGGTATTTGTATTTCCATA+AGG - chr3.1:48509984-48510003 MS.gene05726:CDS 30.0%
! ATAACTATTTGGCTCATCAA+AGG - chr3.1:48507903-48507922 MS.gene05726:CDS 30.0%
! CAACTAAAAGATAAGCATTG+GGG + chr3.1:48507325-48507344 None:intergenic 30.0%
! TATCATACCATTTTGTACTC+AGG + chr3.1:48510276-48510295 None:intergenic 30.0%
! TATCTTTTCATTTGTTCTGC+TGG - chr3.1:48508341-48508360 MS.gene05726:intron 30.0%
! TCATGCAGCACATTTTATAT+AGG - chr3.1:48510544-48510563 MS.gene05726:intron 30.0%
! TTGATGTCATGGTCTTAATT+TGG - chr3.1:48509597-48509616 MS.gene05726:intron 30.0%
! TTGTTATTGTAGGTTCTGTT+TGG - chr3.1:48508523-48508542 MS.gene05726:intron 30.0%
! TTTTGTGGTTTAGAAGTTCA+TGG - chr3.1:48506872-48506891 MS.gene05726:intron 30.0%
!!! CTCTTTTTCGTTGATTTTGT+TGG + chr3.1:48507659-48507678 None:intergenic 30.0%
AAAGTAGAGTTGAGTACCTT+AGG + chr3.1:48510453-48510472 None:intergenic 35.0%
AATAGTTATCACCATGTTGG+TGG + chr3.1:48507892-48507911 None:intergenic 35.0%
CAAAACAAGAGGATCATAAG+GGG + chr3.1:48508691-48508710 None:intergenic 35.0%
CAAATCATCAGGAGTCAAAT+GGG - chr3.1:48509927-48509946 MS.gene05726:CDS 35.0%
CATAATATTGTTTGCCCCTA+TGG + chr3.1:48509774-48509793 None:intergenic 35.0%
CATATGATGTAACCACAATC+AGG - chr3.1:48509869-48509888 MS.gene05726:intron 35.0%
CATTGATCCTGAGTACAAAA+TGG - chr3.1:48510266-48510285 MS.gene05726:intron 35.0%
CCAAATAGTTATCACCATGT+TGG + chr3.1:48507895-48507914 None:intergenic 35.0%
CCAACATGGTGATAACTATT+TGG - chr3.1:48507892-48507911 MS.gene05726:CDS 35.0%
CCAATAAATCAACATACGCA+TGG - chr3.1:48510187-48510206 MS.gene05726:intron 35.0%
CGAAAAGTTGCAGTCAAATA+GGG - chr3.1:48509662-48509681 MS.gene05726:intron 35.0%
CGAAACACAGAGATTTGATT+AGG + chr3.1:48510969-48510988 None:intergenic 35.0%
CGATTGATGTGTTTGATTAC+AGG - chr3.1:48508850-48508869 MS.gene05726:intron 35.0%
CTCAAAACAAGAGGATCATA+AGG + chr3.1:48508693-48508712 None:intergenic 35.0%
CTCAAAATTGCGAAAAGATG+TGG - chr3.1:48509261-48509280 MS.gene05726:CDS 35.0%
GATTACAGGCTGTGATAAAA+AGG - chr3.1:48508864-48508883 MS.gene05726:CDS 35.0%
GATTTGTCTTCATTGAAGAG+AGG + chr3.1:48507962-48507981 None:intergenic 35.0%
GGACAGAAATTGCAGTAAAT+GGG + chr3.1:48510476-48510495 None:intergenic 35.0%
GGATTTCATCAAAGTTGCAA+TGG - chr3.1:48510242-48510261 MS.gene05726:intron 35.0%
GGCCTTTATTAAGGTTATGT+TGG + chr3.1:48510948-48510967 None:intergenic 35.0%
TCAAATCATCAGGAGTCAAA+TGG - chr3.1:48509926-48509945 MS.gene05726:CDS 35.0%
TCACTTCCTTGTATATTGGT+TGG - chr3.1:48508409-48508428 MS.gene05726:intron 35.0%
TCTCGAAAGATCAAATCATC+AGG - chr3.1:48509916-48509935 MS.gene05726:CDS 35.0%
TGAGAAATGGATACTAAGGA+AGG - chr3.1:48510398-48510417 MS.gene05726:intron 35.0%
TGATGAGGAAGAATGAAGAA+TGG - chr3.1:48506969-48506988 MS.gene05726:intron 35.0%
TGCAGATTAAAGCTCTTCAT+AGG - chr3.1:48510148-48510167 MS.gene05726:intron 35.0%
TGGACAGAAATTGCAGTAAA+TGG + chr3.1:48510477-48510496 None:intergenic 35.0%
TGGTGAAACTCTTCTTTGTT+TGG + chr3.1:48510012-48510031 None:intergenic 35.0%
TGTGAATCTTACCTTCTCAA+AGG + chr3.1:48508721-48508740 None:intergenic 35.0%
TGTGTACGGAATTTGTGATT+AGG + chr3.1:48508144-48508163 None:intergenic 35.0%
TTTCGAGACATCAGAAACAT+AGG + chr3.1:48509904-48509923 None:intergenic 35.0%
! AATTTTGTGGACATGTTGGA+TGG - chr3.1:48508318-48508337 MS.gene05726:intron 35.0%
! ACTTCCTTGTATATTGGTTG+GGG - chr3.1:48508411-48508430 MS.gene05726:intron 35.0%
! AGAGAAGTAGCAGACTTTTT+AGG - chr3.1:48509172-48509191 MS.gene05726:CDS 35.0%
! CACTTCCTTGTATATTGGTT+GGG - chr3.1:48508410-48508429 MS.gene05726:intron 35.0%
! GAAGGATCTGATGAGATTTT+TGG - chr3.1:48509961-48509980 MS.gene05726:CDS 35.0%
! GCACATTTTATATAGGCAGA+AGG - chr3.1:48510551-48510570 MS.gene05726:intron 35.0%
! GGAGTATGGAGAAAATTTTG+TGG - chr3.1:48508305-48508324 MS.gene05726:intron 35.0%
! GTGTTTCGATTTGTAGAACT+CGG - chr3.1:48510981-48511000 MS.gene05726:intron 35.0%
! TGGTTGGATTGATGGTATTA+AGG - chr3.1:48510599-48510618 MS.gene05726:intron 35.0%
! TGTTTACATGTTTTGCAGCA+TGG + chr3.1:48510626-48510645 None:intergenic 35.0%
! TGTTTTACTATCTGGAGGTT+TGG - chr3.1:48508910-48508929 MS.gene05726:CDS 35.0%
!! AGAAGCTAGAGTACCATTTT+TGG - chr3.1:48510215-48510234 MS.gene05726:intron 35.0%
!! CCATGCGTATGTTGATTTAT+TGG + chr3.1:48510190-48510209 None:intergenic 35.0%
!! GATCTGATGAGATTTTTGGA+GGG - chr3.1:48509965-48509984 MS.gene05726:CDS 35.0%
!! TAGAGTACCATTTTTGGACA+AGG - chr3.1:48510221-48510240 MS.gene05726:intron 35.0%
!!! CATTTTGAAGTTTTTCCACC+TGG - chr3.1:48508585-48508604 MS.gene05726:intron 35.0%
!!! CTTATGATCCTCTTGTTTTG+AGG - chr3.1:48508691-48508710 MS.gene05726:CDS 35.0%
!!! TGGCACGTTTTTGTTATTGT+AGG - chr3.1:48508513-48508532 MS.gene05726:intron 35.0%
AAACACGTTGACCAGAGATA+CGG - chr3.1:48508740-48508759 MS.gene05726:intron 40.0%
ACAAAAGCTGCTAAGCAATG+GGG - chr3.1:48508977-48508996 MS.gene05726:CDS 40.0%
ACAACAGTTTCATTGTTGCG+AGG - chr3.1:48508373-48508392 MS.gene05726:intron 40.0%
AGAAGTCACAGTCTAGATTG+TGG - chr3.1:48509729-48509748 MS.gene05726:CDS 40.0%
AGACATCAGAAACATAGGTG+TGG + chr3.1:48509899-48509918 None:intergenic 40.0%
AGAGAATCCTTACCTTCCTA+AGG - chr3.1:48510434-48510453 MS.gene05726:intron 40.0%
ATAACAGCCTCATTGAACCA+CGG + chr3.1:48508660-48508679 None:intergenic 40.0%
ATTACATCGCTCGTGTTTGA+AGG - chr3.1:48510061-48510080 MS.gene05726:intron 40.0%
ATTGTTTCCTGAGGTCTTCA+TGG + chr3.1:48508119-48508138 None:intergenic 40.0%
CAAATTCTGATGTGACACCA+AGG + chr3.1:48509468-48509487 None:intergenic 40.0%
CAACAGTTTCATTGTTGCGA+GGG - chr3.1:48508374-48508393 MS.gene05726:intron 40.0%
CACAAAAGCTGCTAAGCAAT+GGG - chr3.1:48508976-48508995 MS.gene05726:CDS 40.0%
CACAGAGAAAGCTATTGAGT+GGG - chr3.1:48511044-48511063 MS.gene05726:intron 40.0%
CATCACAGTCACATTGTGTA+CGG + chr3.1:48508158-48508177 None:intergenic 40.0%
CATGCAGACATCAAAAACCT+TGG - chr3.1:48509448-48509467 MS.gene05726:CDS 40.0%
CCAGATAGTAAAACACCGAA+CGG + chr3.1:48508905-48508924 None:intergenic 40.0%
CCTAAACTATTTACACCCTC+CGG + chr3.1:48507494-48507513 None:intergenic 40.0%
CGAAAAGATGTGGGCAAATA+GGG - chr3.1:48509271-48509290 MS.gene05726:CDS 40.0%
CTCAAAATTGCGAAGAGTTG+CGG - chr3.1:48509521-48509540 MS.gene05726:CDS 40.0%
CTCATTCTGTGTAGGACTTA+AGG - chr3.1:48509012-48509031 MS.gene05726:intron 40.0%
GATTAGGCAATTGTTTCCTG+AGG + chr3.1:48508128-48508147 None:intergenic 40.0%
GCGAAAAGTTGCAGTCAAAT+AGG - chr3.1:48509661-48509680 MS.gene05726:intron 40.0%
GGTAAAGAGGAGTTTGATCA+TGG + chr3.1:48506825-48506844 None:intergenic 40.0%
TAGAGTTGAGTACCTTAGGA+AGG + chr3.1:48510449-48510468 None:intergenic 40.0%
TAGTCCCCAACCAATATACA+AGG + chr3.1:48508418-48508437 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr3.1:48507476-48507495 MS.gene05726:CDS 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr3.1:48507495-48507476 None:intergenic 40.0%
TGGAGGTTTGGATTCTTCAT+TGG - chr3.1:48508922-48508941 MS.gene05726:CDS 40.0%
TTATGTCGCAGTCTTTACTG+TGG - chr3.1:48509337-48509356 MS.gene05726:intron 40.0%
TTGAGTACCTTAGGAAGGTA+AGG + chr3.1:48510444-48510463 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr3.1:48507475-48507494 MS.gene05726:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr3.1:48507494-48507475 None:intergenic 40.0%
! AAAGTCTGCTACTTCTCTTC+CGG + chr3.1:48509170-48509189 None:intergenic 40.0%
! AAATGGGTGATTTCTGGAGA+AGG - chr3.1:48509943-48509962 MS.gene05726:CDS 40.0%
! ATTTTGTGGTCTATGCAGGA+TGG - chr3.1:48509808-48509827 MS.gene05726:intron 40.0%
! CAAAGTCGCATCAGTGTTTT+TGG + chr3.1:48509548-48509567 None:intergenic 40.0%
! TATATTGGTTGGGGACTAGA+TGG - chr3.1:48508420-48508439 MS.gene05726:intron 40.0%
!! CTTCTTTGTTTGGTGCCTTA+TGG + chr3.1:48510002-48510021 None:intergenic 40.0%
!! GGATCTGATGAGATTTTTGG+AGG - chr3.1:48509964-48509983 MS.gene05726:CDS 40.0%
!! GGTGTCACTTCCTTGTATAT+TGG - chr3.1:48508405-48508424 MS.gene05726:intron 40.0%
!! TTGGTAAGTGGAGTGTTGAA+AGG + chr3.1:48510775-48510794 None:intergenic 40.0%
!! TTTTGGCAACTGAGTTGACT+TGG + chr3.1:48511143-48511162 None:intergenic 40.0%
!!! TTCGGTGTTTTACTATCTGG+AGG - chr3.1:48508905-48508924 MS.gene05726:CDS 40.0%
ACCAGAAGCAGGATCAACAA+TGG + chr3.1:48507933-48507952 None:intergenic 45.0%
ACTTGTACTCGAGCAAAGAC+CGG - chr3.1:48508610-48508629 MS.gene05726:intron 45.0%
AGAGGATCATAAGGGGTTGT+TGG + chr3.1:48508684-48508703 None:intergenic 45.0%
ATTGTTGCGAGGGATGCTAT+AGG - chr3.1:48508384-48508403 MS.gene05726:intron 45.0%
CAGAAGGAACAGTTCAGTGA+TGG - chr3.1:48510567-48510586 MS.gene05726:intron 45.0%
CTATTGAGTGGGATGCTTCT+TGG - chr3.1:48511055-48511074 MS.gene05726:intron 45.0%
CTGTGATGTTATTGCACACC+TGG - chr3.1:48508170-48508189 MS.gene05726:intron 45.0%
GCACAAAAGCTGCTAAGCAA+TGG - chr3.1:48508975-48508994 MS.gene05726:CDS 45.0%
GCACAGAGAAAGCTATTGAG+TGG - chr3.1:48511043-48511062 MS.gene05726:intron 45.0%
GCATTGGGGCCCAATATAAA+TGG + chr3.1:48507311-48507330 None:intergenic 45.0%
GCGAAAAGATGTGGGCAAAT+AGG - chr3.1:48509270-48509289 MS.gene05726:CDS 45.0%
GGAGTCAAATGGGTGATTTC+TGG - chr3.1:48509937-48509956 MS.gene05726:CDS 45.0%
GGATGGCATAGATGCAATAG+AGG - chr3.1:48509825-48509844 MS.gene05726:intron 45.0%
GTAGAACTCGGCAAGACTAA+CGG - chr3.1:48510993-48511012 MS.gene05726:intron 45.0%
GTTGGCTATGGTTGGATTGA+TGG - chr3.1:48510591-48510610 MS.gene05726:intron 45.0%
TCAAGCAACCTTGATCCTTC+TGG - chr3.1:48511078-48511097 MS.gene05726:intron 45.0%
TCTACAACCATGAAGACCTC+AGG - chr3.1:48508109-48508128 MS.gene05726:intron 45.0%
TGTACCATCTACGAAACTCC+CGG + chr3.1:48508632-48508651 None:intergenic 45.0%
TTACCTTGCGGCATGTTTCT+TGG + chr3.1:48510032-48510051 None:intergenic 45.0%
! AAGGCGTTCCTCAAAACAAG+AGG + chr3.1:48508702-48508721 None:intergenic 45.0%
! CCGGAGGGTGTAAATAGTTT+AGG - chr3.1:48507491-48507510 MS.gene05726:CDS 45.0%
! CTCTTTTCAGACCGTATCTC+TGG + chr3.1:48508754-48508773 None:intergenic 45.0%
! GAACAGTTCAGTGATGGAGT+TGG - chr3.1:48510573-48510592 MS.gene05726:intron 45.0%
! GTTGTAACTTGTACACCCTC+CGG - chr3.1:48507341-48507360 MS.gene05726:intron 45.0%
! TTCAGTGATGGAGTTGGCTA+TGG - chr3.1:48510579-48510598 MS.gene05726:intron 45.0%
! TTGATGACTGATGTGCCGTT+CGG - chr3.1:48508887-48508906 MS.gene05726:CDS 45.0%
! TTTGAGGAACGCCTTTGAGA+AGG - chr3.1:48508707-48508726 MS.gene05726:CDS 45.0%
!! CTTTGAGAGGTTTTTCCCTC+AGG - chr3.1:48510819-48510838 MS.gene05726:intron 45.0%
!!! CCGTTCGGTGTTTTACTATC+TGG - chr3.1:48508902-48508921 MS.gene05726:CDS 45.0%
!!! CTTCTCTGGCTCTACAGTTT+TGG + chr3.1:48511160-48511179 None:intergenic 45.0%
!! TTATTAATTATTATTCTAAT+TGG + chr3.1:48507767-48507786 None:intergenic 5.0%
!!! TTTTTTTAAAAAATTTAACA+TGG - chr3.1:48506932-48506951 MS.gene05726:intron 5.0%
AAGACCGGGAGTTTCGTAGA+TGG - chr3.1:48508625-48508644 MS.gene05726:intron 50.0%
AGCAGTCACTGCTAGATACC+TGG - chr3.1:48508949-48508968 MS.gene05726:CDS 50.0%
ATTGCCTGCGAGAAAGCTCA+AGG + chr3.1:48506686-48506705 None:intergenic 50.0%
CAATCCTCCGTGGTTCAATG+AGG - chr3.1:48508650-48508669 MS.gene05726:intron 50.0%
CCAAATGCTGCTCTTCCAGA+AGG + chr3.1:48511096-48511115 None:intergenic 50.0%
CTACTTCTCTTCCGGCCTTA+AGG + chr3.1:48509162-48509181 None:intergenic 50.0%
CTGCTCTTCCAGAAGGATCA+AGG + chr3.1:48511089-48511108 None:intergenic 50.0%
CTTGTACTCGAGCAAAGACC+GGG - chr3.1:48508611-48508630 MS.gene05726:intron 50.0%
GCCATTGTTGATCCTGCTTC+TGG - chr3.1:48507929-48507948 MS.gene05726:CDS 50.0%
GTAGATGGTACAATCCTCCG+TGG - chr3.1:48508640-48508659 MS.gene05726:intron 50.0%
TCACCAAGAAACATGCCGCA+AGG - chr3.1:48510026-48510045 MS.gene05726:intron 50.0%
TTAGGGTGCACCTGACCTTA+AGG - chr3.1:48509144-48509163 MS.gene05726:intron 50.0%
TTGCTCGAGTACAAGTGACC+AGG + chr3.1:48508606-48508625 None:intergenic 50.0%
! AGAGGTTGATCACCAGAAGC+AGG + chr3.1:48507944-48507963 None:intergenic 50.0%
! CCTTCTGGAAGAGCAGCATT+TGG - chr3.1:48511093-48511112 MS.gene05726:intron 50.0%
! GTGATGGAGTTGGCTATGGT+TGG - chr3.1:48510583-48510602 MS.gene05726:intron 50.0%
!! TGTCACAGATTGAAGCACCG+TGG - chr3.1:48507848-48507867 MS.gene05726:CDS 50.0%
ACAGCCTCATTGAACCACGG+AGG + chr3.1:48508657-48508676 None:intergenic 55.0%
CACACCTGGTTAGTATGCCG+CGG - chr3.1:48508184-48508203 MS.gene05726:intron 55.0%
CATGCAACACTAGCTCCTCC+AGG + chr3.1:48511021-48511040 None:intergenic 55.0%
CTCGAGTACAAGTGACCAGG+TGG + chr3.1:48508603-48508622 None:intergenic 55.0%
GCAAGACTAACGGTTCCTGG+AGG - chr3.1:48511003-48511022 MS.gene05726:intron 55.0%
GCATCCTTGAGCTTTCTCGC+AGG - chr3.1:48506679-48506698 MS.gene05726:CDS 55.0%
GTATGCCGCGGTCTAGATTG+TGG - chr3.1:48508196-48508215 MS.gene05726:intron 55.0%
GTCACTGCTAGATACCTGGC+TGG - chr3.1:48508953-48508972 MS.gene05726:CDS 55.0%
TAGACCGCGGCATACTAACC+AGG + chr3.1:48508191-48508210 None:intergenic 55.0%
TCGGCAAGACTAACGGTTCC+TGG - chr3.1:48511000-48511019 MS.gene05726:intron 55.0%
TCTCTTCCGGCCTTAAGGTC+AGG + chr3.1:48509157-48509176 None:intergenic 55.0%
! TAGCAGCTTTTGTGCCAGCC+AGG + chr3.1:48508970-48508989 None:intergenic 55.0%
ACCGTGGTCCAGACTGGAGT+GGG - chr3.1:48507864-48507883 MS.gene05726:CDS 60.0%
AGGTGTGGCTGCCCTGATTG+TGG + chr3.1:48509884-48509903 None:intergenic 60.0%
CGCGACCACAATCTAGACCG+CGG + chr3.1:48508204-48508223 None:intergenic 60.0%
CGCGGTCTAGATTGTGGTCG+CGG - chr3.1:48508202-48508221 MS.gene05726:intron 60.0%
CTAGATTGTGGTCGCGGTCG+CGG - chr3.1:48508208-48508227 MS.gene05726:intron 60.0%
GGTGCACCTGACCTTAAGGC+CGG - chr3.1:48509148-48509167 MS.gene05726:intron 60.0%
! TGGAGTGGGCTCCACCAACA+TGG - chr3.1:48507878-48507897 MS.gene05726:CDS 60.0%
!! TGAAGCACCGTGGTCCAGAC+TGG - chr3.1:48507858-48507877 MS.gene05726:CDS 60.0%
CACCGTGGTCCAGACTGGAG+TGG - chr3.1:48507863-48507882 MS.gene05726:CDS 65.0%
GCCCACTCCAGTCTGGACCA+CGG + chr3.1:48507868-48507887 None:intergenic 65.0%
TGGTGGAGCCCACTCCAGTC+TGG + chr3.1:48507875-48507894 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 48506655 48511230 48506655 ID=MS.gene05726
chr3.1 mRNA 48506655 48511230 48506655 ID=MS.gene05726.t1;Parent=MS.gene05726
chr3.1 exon 48511211 48511230 48511211 ID=MS.gene05726.t1.exon1;Parent=MS.gene05726.t1
chr3.1 CDS 48511211 48511230 48511211 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
chr3.1 exon 48509891 48510029 48509891 ID=MS.gene05726.t1.exon2;Parent=MS.gene05726.t1
chr3.1 CDS 48509891 48510029 48509891 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
chr3.1 exon 48509694 48509789 48509694 ID=MS.gene05726.t1.exon3;Parent=MS.gene05726.t1
chr3.1 CDS 48509694 48509789 48509694 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
chr3.1 exon 48509444 48509585 48509444 ID=MS.gene05726.t1.exon4;Parent=MS.gene05726.t1
chr3.1 CDS 48509444 48509585 48509444 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
chr3.1 exon 48509157 48509350 48509157 ID=MS.gene05726.t1.exon5;Parent=MS.gene05726.t1
chr3.1 CDS 48509157 48509350 48509157 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
chr3.1 exon 48508852 48509013 48508852 ID=MS.gene05726.t1.exon6;Parent=MS.gene05726.t1
chr3.1 CDS 48508852 48509013 48508852 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
chr3.1 exon 48508657 48508737 48508657 ID=MS.gene05726.t1.exon7;Parent=MS.gene05726.t1
chr3.1 CDS 48508657 48508737 48508657 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
chr3.1 exon 48507838 48508059 48507838 ID=MS.gene05726.t1.exon8;Parent=MS.gene05726.t1
chr3.1 CDS 48507838 48508059 48507838 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
chr3.1 exon 48507598 48507732 48507598 ID=MS.gene05726.t1.exon9;Parent=MS.gene05726.t1
chr3.1 CDS 48507598 48507732 48507598 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
chr3.1 exon 48507430 48507510 48507430 ID=MS.gene05726.t1.exon10;Parent=MS.gene05726.t1
chr3.1 CDS 48507430 48507510 48507430 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
chr3.1 exon 48507247 48507333 48507247 ID=MS.gene05726.t1.exon11;Parent=MS.gene05726.t1
chr3.1 CDS 48507247 48507333 48507247 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
chr3.1 exon 48507045 48507152 48507045 ID=MS.gene05726.t1.exon12;Parent=MS.gene05726.t1
chr3.1 CDS 48507045 48507152 48507045 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
chr3.1 exon 48506655 48506888 48506655 ID=MS.gene05726.t1.exon13;Parent=MS.gene05726.t1
chr3.1 CDS 48506655 48506888 48506655 ID=cds.MS.gene05726.t1;Parent=MS.gene05726.t1
Gene Sequence

>MS.gene05726

ATGACTCACAAGCTAAGAGGGTTCGCATCCTTGAGCTTTCTCGCAGGCAATTATTCTTCTCATTTTCATGCATACATATATATCTTATATTCCTTTTATATAAATATACCCTTTTGGTTAACTTTGATATTTGTATTCAAAGTTTCTTGTTTTGCATGTTTTTTTATCCATGATCAAACTCCTCTTTACCTAGAGTTTTTTATTTTTTATTTTTGTATTTTGTGGTTTAGAAGTTCATGGGAGTAGTTGAGATTGATATCAAGGATTAATATTCTTATTTTTTTAAAAAATTTAACATGGAGTTTTTATTATATTGATGAGGAAGAATGAAGAATGGAAGTTCAAAATATTTTGGTTTTAAGAGGGTATAAGTATTTTTAGCATATAGTTGCTAAAAACACTAATTAATACATATATGGCTATAATATAATATGGTATTTATATTATTATAAGTTAATATGATAAGTGATATACAAGTAAAGGATACTAGAAAAATCACAAAAATGGTGCTGCTTATTATTTGTTTCCTCGTATTAAATGTCATAGTGATGTCTAGTTTCTACTAGTTCATCCAATATTTTGCCATTGAAAAAAATAAAAAACCATCCAATATTTTAAAGAGAATTATATGTAAAAGTTGAAAATATAATTATCCATTTATATTGGGCCCCAATGCTTATCTTTTAGTTGTAACTTGTACACCCTCCGGTCACTATTATAAGCAAAATTCTATTTTTTAGGTTCATTCAATAAATGATGTATGTGGTCCATTAAATAGACTACATACATCATTTATTGAATGAACCTAAAAAGTAAAATTTTGCTTATAATAGTGACCGGAGGGTGTAAATAGTTTAGGATAAACATACTTGACTTTGACAAGGTGAGTACACACAACACAACTATGACACATTACATAATTTTAGCTTATTGAGAATAAACAAAAGTAAGACATGGGGTCCACATGTTATTTTGATGCAATAATTGGTTCGGCAATTAACCCAACAAAATCAACGAAAAAGAGATAAAATTAATTTGTCCTACATGTGGAATTTTTATTTTAATAAATCACGTGGGAATTTTTAATTACCTGTTCATATACATAAAGTCCAATTAGAATAATAATTAATAAGTAACTTTGGTTAGTTTGATAAGTAATTTGATTGATCATATATTAATGTTTATGCATATGATGTCACAGATTGAAGCACCGTGGTCCAGACTGGAGTGGGCTCCACCAACATGGTGATAACTATTTGGCTCATCAAAGGTTAGCCATTGTTGATCCTGCTTCTGGTGATCAACCTCTCTTCAATGAAGACAAATCTATTATTGTCACGGTAATAATTAACCCTAGTAATATTCTATAGTTTATTACATTTTTTATGCTATATAGTATAATAAAGTGGTAGTAACAAATAAATTTTATCATAAAATTCAGGTGAATGGAGAGATCTACAACCATGAAGACCTCAGGAAACAATTGCCTAATCACAAATTCCGTACACAATGTGACTGTGATGTTATTGCACACCTGGTTAGTATGCCGCGGTCTAGATTGTGGTCGCGGTCGCGGACCTTTATTTAAAACATTGCTAATTATTGTACCATGAATGTTATTGATTTTGGTTATTTTTTATGTTAGTATGAGGAGTATGGAGAAAATTTTGTGGACATGTTGGATGGTATCTTTTCATTTGTTCTGCTGGATACTCGCGACAACAGTTTCATTGTTGCGAGGGATGCTATAGGTGTCACTTCCTTGTATATTGGTTGGGGACTAGATGGTAATTAGAACGAGTTCATTTGTTCAATTCGTAACTATAGAGCGAAAGATTTGAATAATTTGTGACAAGTTTGGCACGTTTTTGTTATTGTAGGTTCTGTTTGGATTGCATCAGAATTAAAAGGGCTGAATGATGAATGTGAACATTTTGAAGTTTTTCCACCTGGTCACTTGTACTCGAGCAAAGACCGGGAGTTTCGTAGATGGTACAATCCTCCGTGGTTCAATGAGGCTGTTATTCCAACAACCCCTTATGATCCTCTTGTTTTGAGGAACGCCTTTGAGAAGGTAAGATTCACAAACACGTTGACCAGAGATACGGTCTGAAAAGAGTTTATAAAGCACTTAGATAATTCTTACATTTTTAAGTCGGTTCTGTAAGATTGAGCTACACTTAGTAAAATTAATACGATTGATGTGTTTGATTACAGGCTGTGATAAAAAGGTTGATGACTGATGTGCCGTTCGGTGTTTTACTATCTGGAGGTTTGGATTCTTCATTGGTTGCAGCAGTCACTGCTAGATACCTGGCTGGCACAAAAGCTGCTAAGCAATGGGGAGCAAAATTACACTCATTCTGTGTAGGACTTAAGGTATGAATGAAAAATCAATTTTAGTGGATTATTAAAAAAATTCAATGGAAAAAAAAAAACATTCATTTAAGGTTGTCTAATTGCTTTAATCTTTATTTATGGTATGTTGATTAGGGTGCACCTGACCTTAAGGCCGGAAGAGAAGTAGCAGACTTTTTAGGAACTGTCCATCATGAATTTCAGTTTACTATTCAGGTATATAATCTACTTCAAATATTACTTTTCTGCTCAAAATTGCGAAAAGATGTGGGCAAATAGGGCTGATGCGACTTGAATTATAATCGCACACAGACTTTAAAAAAATTATGTCGCAGTCTTTACTGTGGTCGCAAATCTACTTGAAATAGTACTTGTCTACTCAAAATTGCAAAAAGTTGCAGTCAAATAGCGCTGATGCGACTTTGATCATAATGACATGCAGACATCAAAAACCTTGGTGTCACATCAGAATTTGTGTCGCAAATCTACTTGAAATAGTACTTGTCTGCTCAAAATTGCGAAGAGTTGCGGTCCAAAAACACTGATGCGACTTTGATCATATTCGCACGCAGACATCAAAAACATTGATGTCATGGTCTTAATTTGGTTCACAAATCCACTTCAAATAGTATTTGTCTACTCAAAATTGCGAAAAGTTGCAGTCAAATAGGGCTGATGCGACTTTGATCATAATCGCACGCTGACATCAAAATACTAGAAGTCACAGTCTAGATTGTGGTCGCACATTTTTTATGATACCATAGGGGCAAACAATATTATGATTCTTTATTAAATATTTTGTGGTCTATGCAGGATGGCATAGATGCAATAGAGGATGTCATCTATCATACAGAAACATATGATGTAACCACAATCAGGGCAGCCACACCTATGTTTCTGATGTCTCGAAAGATCAAATCATCAGGAGTCAAATGGGTGATTTCTGGAGAAGGATCTGATGAGATTTTTGGAGGGTATTTGTATTTCCATAAGGCACCAAACAAAGAAGAGTTTCACCAAGAAACATGCCGCAAGGTAATAGAACTACATTACATCGCTCGTGTTTGAAGGAAAAAAAATGAAGTGGTTGAAGTGAAATTTTTTGATATGATTAGATAATCTTCTTTTTTCTTTATGCAGATTAAAGCTCTTCATAGGTATGATTGTCTGAGAGCCAATAAATCAACATACGCATGGGGTCTAGAAGCTAGAGTACCATTTTTGGACAAGGATTTCATCAAAGTTGCAATGGACATTGATCCTGAGTACAAAATGGTATGATACATGAATACAAAAAGTGTCGCTATGAAACATTACTTAAAATGTAACATTTTATTAAGTTTTTTTATTCATTTTGTTCAGATAAAACATGAAGAAGGAAGAATTGAGAAATGGATACTAAGGAAGGCTTTTGATGATGAAGAGAATCCTTACCTTCCTAAGGTACTCAACTCTACTTTCCCATTTACTGCAATTTCTGTCCATAATTTGCAAATTTAATTTGTGAAACTAACATCTTATAAATTTAATATCATGCAGCACATTTTATATAGGCAGAAGGAACAGTTCAGTGATGGAGTTGGCTATGGTTGGATTGATGGTATTAAGGACCATGCTGCAAAACATGTAAACATAAATCCAACATTTTCTTTCCAATTTCATTTTACTTTTGTTGCAAGGCATGTCGCTAATAATTCGTTCTTGAAATTTTTTCGTATAGGTCACTGATAGAATGATGCTCAATGCTTCTCACATCTTTCCTTTCAACACTCCACTTACCAAAGAAGCATATTACTATAGAATGATCTTTGAGAGGTTTTTCCCTCAGGTAACTTAATCAATCAAATCTTGATTTGTCGCCAAGCGACATTGTTATAAAAATAGCTTATACAGAAGAACTTATATGATAAGCACTTAATTAAGTTGTTTATCCCAACATAACCTTAATAAAGGCCTAATCAAATCTCTGTGTTTCGATTTGTAGAACTCGGCAAGACTAACGGTTCCTGGAGGAGCTAGTGTTGCATGTAGCACAGAGAAAGCTATTGAGTGGGATGCTTCTTGGTCAAGCAACCTTGATCCTTCTGGAAGAGCAGCATTTGGAGTTCATAATTCAGCTTATGAAAACCAAGTCAACTCAGTTGCCAAAACTGTAGAGCCAGAGAAGATTATACCAAAGATGGAAATTTCTAATCTTGGAGTTGCCATTCAAAGCTAA

Protein sequence

>MS.gene05726.t1

MTHKLRGLKHRGPDWSGLHQHGDNYLAHQRLAIVDPASGDQPLFNEDKSIIVTVNGEIYNHEDLRKQLPNHKFRTQCDCDVIAHLYEEYGENFVDMLDGIFSFVLLDTRDNSFIVARDAIGVTSLYIGWGLDGSVWIASELKGLNDECEHFEVFPPGHLYSSKDREFRRWYNPPWFNEAVIPTTPYDPLVLRNAFEKAVIKRLMTDVPFGVLLSGGLDSSLVAAVTARYLAGTKAAKQWGAKLHSFCVGLKGAPDLKAGREVADFLGTVHHEFQFTIQDGIDAIEDVIYHTETYDVTTIRAATPMFLMSRKIKSSGVKWVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHRYDCLRANKSTYAWGLEARVPFLDKDFIKVAMDIDPEYKMIKHEEGRIEKWILRKAFDDEENPYLPKHILYRQKEQFSDGVGYGWIDGIKDHAAKHVTDRMMLNASHIFPFNTPLTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTEKAIEWDASWSSNLDPSGRAAFGVHNSAYENQVNSVAKTVEPEKIIPKMEISNLGVAIQS