Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32896.t1 | XP_013461757.1 | 98.2 | 326 | 6 | 0 | 1 | 326 | 1 | 326 | 1.50E-187 | 665.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32896.t1 | Q10170 | 32.9 | 334 | 201 | 8 | 6 | 318 | 21 | 352 | 6.7e-51 | 202.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32896.t1 | G8A2A3 | 98.2 | 326 | 6 | 0 | 1 | 326 | 1 | 326 | 1.1e-187 | 665.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88624 | MS.gene32896 | PPI |
| MS.gene32896 | MS.gene33297 | PPI |
| MS.gene32896 | MS.gene91142 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32896.t1 | MTR_3g102800 | 98.160 | 326 | 6 | 0 | 1 | 326 | 1 | 326 | 0.0 | 663 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32896.t1 | AT5G65860 | 75.155 | 322 | 78 | 1 | 4 | 323 | 5 | 326 | 0.0 | 526 |
| MS.gene32896.t1 | AT5G65860 | 75.155 | 322 | 78 | 1 | 4 | 323 | 5 | 326 | 0.0 | 526 |
| MS.gene32896.t1 | AT5G65860 | 75.155 | 322 | 78 | 1 | 4 | 323 | 25 | 346 | 0.0 | 526 |
Find 102 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCTTGAGCTTGAGAATT+TGG | 0.148087 | 3.3:+84902903 | MS.gene32896:CDS |
| TGATTCCGGTTATGATTATT+TGG | 0.213704 | 3.3:+84901555 | MS.gene32896:CDS |
| CATGTACTCAATATTGGATT+TGG | 0.261666 | 3.3:+84901697 | MS.gene32896:CDS |
| TCTCTTGAGCTTGAGAATTT+GGG | 0.285212 | 3.3:+84902904 | MS.gene32896:CDS |
| ATTGCCTGTTAAGGATTGTT+TGG | 0.285893 | 3.3:+84902948 | MS.gene32896:CDS |
| TTGCCTGTTAAGGATTGTTT+GGG | 0.287460 | 3.3:+84902949 | MS.gene32896:CDS |
| CTATGCGAGGCGGCGATTAA+AGG | 0.287831 | 3.3:+84900990 | MS.gene32896:CDS |
| GAAGAAGCTCATAAGCTTCT+TGG | 0.296988 | 3.3:-84901214 | None:intergenic |
| GTTATGATTATTTGGAAGAT+AGG | 0.317017 | 3.3:+84901563 | MS.gene32896:CDS |
| TTCTCTCCGCCGGTGCTCCT+TGG | 0.327627 | 3.3:+84901135 | MS.gene32896:CDS |
| ACGTATGCTTCGCACGGGTT+GGG | 0.340731 | 3.3:+84901801 | MS.gene32896:CDS |
| TCTTTCTTCAATGGCCTTTG+TGG | 0.351869 | 3.3:+84902841 | MS.gene32896:CDS |
| ATTAATTCCATTGCCTGTTA+AGG | 0.360892 | 3.3:+84902939 | MS.gene32896:CDS |
| CATGCTAAAGCTGTTTGTTC+AGG | 0.364371 | 3.3:+84901667 | MS.gene32896:CDS |
| GGTGGTCATGTACTCAATAT+TGG | 0.375114 | 3.3:+84901691 | MS.gene32896:CDS |
| CTCAATATTGGATTTGGAAT+GGG | 0.395612 | 3.3:+84901703 | MS.gene32896:CDS |
| GGAATATACTCTTTCTTCAA+TGG | 0.395895 | 3.3:+84902832 | MS.gene32896:CDS |
| TCATCTGCAGACTGACAAAC+AGG | 0.396199 | 3.3:-84903030 | None:intergenic |
| AACGTATGCTTCGCACGGGT+TGG | 0.424986 | 3.3:+84901800 | MS.gene32896:CDS |
| ATCTTCCAAATAATCATAAC+CGG | 0.430063 | 3.3:-84901560 | None:intergenic |
| GAAAAGAAAAGCACTGATTC+CGG | 0.430789 | 3.3:+84901541 | MS.gene32896:CDS |
| CCATGTTGTTTACTGCCACT+TGG | 0.440964 | 3.3:+84902879 | MS.gene32896:CDS |
| CGTATGCTTCGCACGGGTTG+GGG | 0.445579 | 3.3:+84901802 | MS.gene32896:CDS |
| TGCTTTGCGGCAAGCATAAG+AGG | 0.448061 | 3.3:-84901086 | None:intergenic |
| GGGTGCATGGCCGTGCTTTG+CGG | 0.456552 | 3.3:-84901099 | None:intergenic |
| GGGATATTCTTTGACACCTA+CGG | 0.456919 | 3.3:+84902748 | MS.gene32896:intron |
| TTAGCATGAGCCTCCATCAA+TGG | 0.470308 | 3.3:-84901652 | None:intergenic |
| ATTCGATCTGAATTAGTGTT+GGG | 0.480443 | 3.3:+84901502 | MS.gene32896:CDS |
| CCACCCGGCTTCAACAATAC+AGG | 0.482020 | 3.3:-84902811 | None:intergenic |
| GGATATTCTTTGACACCTAC+GGG | 0.485801 | 3.3:+84902749 | MS.gene32896:CDS |
| ACTCAATATTGGATTTGGAA+TGG | 0.488555 | 3.3:+84901702 | MS.gene32896:CDS |
| TATGAGCTTCTTCTCAATGC+TGG | 0.492065 | 3.3:+84901224 | MS.gene32896:CDS |
| TTCTTCAATGGCCTTTGTGG+TGG | 0.493941 | 3.3:+84902844 | MS.gene32896:CDS |
| GTTGGGAACAATTGCTAGGA+AGG | 0.504005 | 3.3:+84901519 | MS.gene32896:CDS |
| CCGACGTTACTCATTTCGAC+GGG | 0.504358 | 3.3:+84901051 | MS.gene32896:CDS |
| TTATGATTATTTGGAAGATA+GGG | 0.505378 | 3.3:+84901564 | MS.gene32896:CDS |
| GGAGAGAAGGATGTCGAGGA+TGG | 0.507596 | 3.3:-84901120 | None:intergenic |
| CTCGACATCCTTCTCTCCGC+CGG | 0.511422 | 3.3:+84901125 | MS.gene32896:CDS |
| TCAACAATGGTATGTTTCAC+AGG | 0.511587 | 3.3:-84901757 | None:intergenic |
| AAGGTGTCAAACACAGATAC+TGG | 0.517912 | 3.3:+84902986 | MS.gene32896:CDS |
| TCTCCCTGTATTGTTGAAGC+CGG | 0.518751 | 3.3:+84902807 | MS.gene32896:CDS |
| GGCATGGGAGAAGCCATTGA+TGG | 0.521455 | 3.3:+84901639 | MS.gene32896:CDS |
| TATTCGATCTGAATTAGTGT+TGG | 0.521798 | 3.3:+84901501 | MS.gene32896:CDS |
| CATATGTTTCAAGCTGAGAC+AGG | 0.523440 | 3.3:-84901870 | None:intergenic |
| TCTCCTTCCAACCTTTCCGC+CGG | 0.523539 | 3.3:+84901167 | MS.gene32896:CDS |
| CTCTTGAGCTTGAGAATTTG+GGG | 0.525010 | 3.3:+84902905 | MS.gene32896:CDS |
| AAACAATCCTTAACAGGCAA+TGG | 0.525589 | 3.3:-84902946 | None:intergenic |
| CTCCCTGTATTGTTGAAGCC+GGG | 0.525798 | 3.3:+84902808 | MS.gene32896:CDS |
| GTTACTCATTTCGACGGGGA+TGG | 0.526133 | 3.3:+84901056 | MS.gene32896:CDS |
| GCCGACGTTACTCATTTCGA+CGG | 0.534338 | 3.3:+84901050 | MS.gene32896:CDS |
| CTTATGCTTGCCGCAAAGCA+CGG | 0.538578 | 3.3:+84901089 | MS.gene32896:CDS |
| AAAGCTGTTTGTTCAGGAGG+TGG | 0.540005 | 3.3:+84901673 | MS.gene32896:CDS |
| AAGGAGCACCGGCGGAGAGA+AGG | 0.543782 | 3.3:-84901133 | None:intergenic |
| TAGTGTTGGGAACAATTGCT+AGG | 0.547152 | 3.3:+84901515 | MS.gene32896:CDS |
| AGCATACGTTCATAAACCTC+AGG | 0.548913 | 3.3:-84901787 | None:intergenic |
| GCTAAAGCTGTTTGTTCAGG+AGG | 0.553788 | 3.3:+84901670 | MS.gene32896:CDS |
| TCTCAGCTTGAAACATATGA+TGG | 0.557266 | 3.3:+84901874 | MS.gene32896:CDS |
| TCAACAATACAGGGAGATGT+TGG | 0.557688 | 3.3:-84902801 | None:intergenic |
| TTGCGAAATCACCGGCGGAA+AGG | 0.562943 | 3.3:-84901178 | None:intergenic |
| GGATGTCGAGGATGGGTGCA+TGG | 0.563108 | 3.3:-84901112 | None:intergenic |
| GATTAAAGGTGAGACGGAGA+AGG | 0.572642 | 3.3:+84901004 | MS.gene32896:CDS |
| GAGAGAAGGATGTCGAGGAT+GGG | 0.580848 | 3.3:-84901119 | None:intergenic |
| GAAATGAGTAACGTCGGCGC+CGG | 0.581725 | 3.3:-84901045 | None:intergenic |
| GAAATCACCGGCGGAAAGGT+TGG | 0.582456 | 3.3:-84901174 | None:intergenic |
| TTCTTGCATTGCGAAATCAC+CGG | 0.583608 | 3.3:-84901186 | None:intergenic |
| AAGAGCGTTCCAAGGAGCAC+CGG | 0.584379 | 3.3:-84901144 | None:intergenic |
| CACCCGGCTTCAACAATACA+GGG | 0.584983 | 3.3:-84902810 | None:intergenic |
| ACAATACAGGGAGATGTTGG+TGG | 0.586371 | 3.3:-84902798 | None:intergenic |
| GAAGGAGAAAGAGCGTTCCA+AGG | 0.591032 | 3.3:-84901152 | None:intergenic |
| TCGCACGGGTTGGGGTGAGA+AGG | 0.593861 | 3.3:+84901810 | MS.gene32896:CDS |
| CATTGTTGAGGCTCATCCTG+AGG | 0.595016 | 3.3:+84901771 | MS.gene32896:CDS |
| GTAAAGTCTCTTATTGACTC+CGG | 0.598492 | 3.3:+84901026 | MS.gene32896:CDS |
| AGCGTTCCAAGGAGCACCGG+CGG | 0.601767 | 3.3:-84901141 | None:intergenic |
| TGAGTGTAAAGCTGTGATGA+TGG | 0.607002 | 3.3:+84901618 | MS.gene32896:CDS |
| TATGAACGTATGCTTCGCAC+GGG | 0.607053 | 3.3:+84901796 | MS.gene32896:CDS |
| TCACCGGCGGAAAGGTTGGA+AGG | 0.609268 | 3.3:-84901170 | None:intergenic |
| CCAAGTGGCAGTAAACAACA+TGG | 0.611294 | 3.3:-84902879 | None:intergenic |
| GGTGATTTCGCAATGCAAGA+AGG | 0.613606 | 3.3:+84901188 | MS.gene32896:CDS |
| TTATGAACGTATGCTTCGCA+CGG | 0.616186 | 3.3:+84901795 | MS.gene32896:CDS |
| CCTGTATTGTTGAAGCCGGG+TGG | 0.618155 | 3.3:+84902811 | MS.gene32896:CDS |
| GTAAAGCTGTGATGATGGCA+TGG | 0.618846 | 3.3:+84901623 | MS.gene32896:CDS |
| CGGCGGAGAGAAGGATGTCG+AGG | 0.626647 | 3.3:-84901124 | None:intergenic |
| AAGAAAGAGTATATTCCACC+CGG | 0.629337 | 3.3:-84902826 | None:intergenic |
| TGCCTGTTAAGGATTGTTTG+GGG | 0.632646 | 3.3:+84902950 | MS.gene32896:CDS |
| GGCGGCGATTAAAGGTGAGA+CGG | 0.637047 | 3.3:+84900998 | MS.gene32896:CDS |
| ATGGGAGAAGCCATTGATGG+AGG | 0.639979 | 3.3:+84901642 | MS.gene32896:CDS |
| GCCTGTTAAGGATTGTTTGG+GGG | 0.641124 | 3.3:+84902951 | MS.gene32896:CDS |
| AGGCAATGGAATTAATTGTG+TGG | 0.643792 | 3.3:-84902932 | None:intergenic |
| GAAGGAAGAAGAACTATGCG+AGG | 0.647053 | 3.3:+84900977 | MS.gene32896:CDS |
| CTCAGGATGAGCCTCAACAA+TGG | 0.655173 | 3.3:-84901770 | None:intergenic |
| TGTGAAACATACCATTGTTG+AGG | 0.661097 | 3.3:+84901759 | MS.gene32896:CDS |
| CCCGTCGAAATGAGTAACGT+CGG | 0.678829 | 3.3:-84901051 | None:intergenic |
| TAAAGCTGTGATGATGGCAT+GGG | 0.687762 | 3.3:+84901624 | MS.gene32896:CDS |
| CGACGTTACTCATTTCGACG+GGG | 0.688723 | 3.3:+84901052 | MS.gene32896:CDS |
| TTGCATTGCGAAATCACCGG+CGG | 0.690041 | 3.3:-84901183 | None:intergenic |
| AAAATGCATTACCACCACAA+AGG | 0.694739 | 3.3:-84902855 | None:intergenic |
| CAAGCTCAAGAGATACCAAG+TGG | 0.699247 | 3.3:-84902894 | None:intergenic |
| GGAAGAAGAACTATGCGAGG+CGG | 0.711413 | 3.3:+84900980 | MS.gene32896:CDS |
| CATCTGCAGACTGACAAACA+GGG | 0.712802 | 3.3:-84903029 | None:intergenic |
| GTCGTCATAGTACTCCCCGT+AGG | 0.723736 | 3.3:-84902764 | None:intergenic |
| GATATTCTTTGACACCTACG+GGG | 0.737280 | 3.3:+84902750 | MS.gene32896:CDS |
| CTGCAGACTGACAAACAGGG+AGG | 0.782216 | 3.3:-84903026 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAAATCAAAACAAA+TGG | - | chr3.3:84902726-84902745 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACAGCAGTAAT+AGG | + | chr3.3:84902183-84902202 | MS.gene32896:intron | 20.0% |
| !! | AAAAAAAAACAGCAGTAATA+GGG | + | chr3.3:84902184-84902203 | MS.gene32896:intron | 20.0% |
| !! | TTATGATTATTTGGAAGATA+GGG | + | chr3.3:84901564-84901583 | MS.gene32896:CDS | 20.0% |
| !!! | AATAGAATTGATTTCGTAAA+AGG | + | chr3.3:84902026-84902045 | MS.gene32896:intron | 20.0% |
| !!! | TCATTTTCACAAATTATTAC+CGG | - | chr3.3:84901322-84901341 | None:intergenic | 20.0% |
| !!! | TGTTTTGATTTTCTTTTTCA+GGG | + | chr3.3:84902728-84902747 | MS.gene32896:intron | 20.0% |
| !!! | TTGTTTTGATTTTCTTTTTC+AGG | + | chr3.3:84902727-84902746 | MS.gene32896:intron | 20.0% |
| !!! | TTTGTGTATTTTACTTTGTT+AGG | + | chr3.3:84901478-84901497 | MS.gene32896:intron | 20.0% |
| !!! | TTTTAGTGAAGATAAAGTAA+TGG | + | chr3.3:84901591-84901610 | MS.gene32896:CDS | 20.0% |
| ! | AACACTTAATGTTAAAAAGC+CGG | + | chr3.3:84902498-84902517 | MS.gene32896:intron | 25.0% |
| ! | AACTTAAATACAACTGCTTA+TGG | + | chr3.3:84902053-84902072 | MS.gene32896:intron | 25.0% |
| ! | AGTTTAACACTAACATGTAT+TGG | + | chr3.3:84901389-84901408 | MS.gene32896:intron | 25.0% |
| ! | ATCTTCCAAATAATCATAAC+CGG | - | chr3.3:84901563-84901582 | None:intergenic | 25.0% |
| ! | ATTAAAAGTAGCATCTATGT+TGG | - | chr3.3:84902347-84902366 | None:intergenic | 25.0% |
| ! | GTTATGATTATTTGGAAGAT+AGG | + | chr3.3:84901563-84901582 | MS.gene32896:CDS | 25.0% |
| ! | TAACCACATAAATTTCACAA+AGG | - | chr3.3:84902236-84902255 | None:intergenic | 25.0% |
| ! | TTAGTGAAAATACATGTCTT+TGG | - | chr3.3:84902422-84902441 | None:intergenic | 25.0% |
| ! | TTGCTTATGTGAAAAACATA+GGG | + | chr3.3:84902626-84902645 | MS.gene32896:intron | 25.0% |
| ! | TTTCACAAAGGAAAAAACTT+AGG | - | chr3.3:84902224-84902243 | None:intergenic | 25.0% |
| ! | TTTCCTTTGTGAAATTTATG+TGG | + | chr3.3:84902230-84902249 | MS.gene32896:intron | 25.0% |
| ! | TTTGCTTATGTGAAAAACAT+AGG | + | chr3.3:84902625-84902644 | MS.gene32896:intron | 25.0% |
| !! | GAAAATGTTCAGATCATTTT+TGG | + | chr3.3:84901832-84901851 | MS.gene32896:CDS | 25.0% |
| !! | GGTTACAATTTAGTTTCTAA+GGG | + | chr3.3:84902251-84902270 | MS.gene32896:intron | 25.0% |
| !! | TCTAATCAAACTAAGTATTG+AGG | + | chr3.3:84902371-84902390 | MS.gene32896:intron | 25.0% |
| !! | TGGTTACAATTTAGTTTCTA+AGG | + | chr3.3:84902250-84902269 | MS.gene32896:intron | 25.0% |
| !!! | AAGTGTTTTTGTTTTATCAG+TGG | - | chr3.3:84902485-84902504 | None:intergenic | 25.0% |
| ACACTTAATGTTAAAAAGCC+GGG | + | chr3.3:84902499-84902518 | MS.gene32896:intron | 30.0% | |
| ACTCAATATTGGATTTGGAA+TGG | + | chr3.3:84901702-84901721 | MS.gene32896:CDS | 30.0% | |
| ATAGTTAATTAGACACAGAG+TGG | - | chr3.3:84901263-84901282 | None:intergenic | 30.0% | |
| ATTAATTCCATTGCCTGTTA+AGG | + | chr3.3:84902939-84902958 | MS.gene32896:CDS | 30.0% | |
| ATTCGATCTGAATTAGTGTT+GGG | + | chr3.3:84901502-84901521 | MS.gene32896:CDS | 30.0% | |
| ATTTCAGCACTAGAATTGAT+TGG | + | chr3.3:84901952-84901971 | MS.gene32896:intron | 30.0% | |
| CATGTACTCAATATTGGATT+TGG | + | chr3.3:84901697-84901716 | MS.gene32896:CDS | 30.0% | |
| GGAATATACTCTTTCTTCAA+TGG | + | chr3.3:84902832-84902851 | MS.gene32896:CDS | 30.0% | |
| TAAGGGAAGTTGTTTATGAT+TGG | + | chr3.3:84902268-84902287 | MS.gene32896:intron | 30.0% | |
| TATTCGATCTGAATTAGTGT+TGG | + | chr3.3:84901501-84901520 | MS.gene32896:CDS | 30.0% | |
| TGATTCCGGTTATGATTATT+TGG | + | chr3.3:84901555-84901574 | MS.gene32896:CDS | 30.0% | |
| TGCTGAAATTAAACATGTAC+TGG | - | chr3.3:84901941-84901960 | None:intergenic | 30.0% | |
| TTATGTGAAAAACATAGGGA+AGG | + | chr3.3:84902630-84902649 | MS.gene32896:intron | 30.0% | |
| TTTCAGCACTAGAATTGATT+GGG | + | chr3.3:84901953-84901972 | MS.gene32896:intron | 30.0% | |
| ! | CTCAATATTGGATTTGGAAT+GGG | + | chr3.3:84901703-84901722 | MS.gene32896:CDS | 30.0% |
| ! | TACTATTTTGCAACGGTATT+TGG | + | chr3.3:84902551-84902570 | MS.gene32896:intron | 30.0% |
| AAAATGCATTACCACCACAA+AGG | - | chr3.3:84902858-84902877 | None:intergenic | 35.0% | |
| AAACAATCCTTAACAGGCAA+TGG | - | chr3.3:84902949-84902968 | None:intergenic | 35.0% | |
| ACAATCCAGTTACAATTACC+AGG | - | chr3.3:84902680-84902699 | None:intergenic | 35.0% | |
| AGGCAATGGAATTAATTGTG+TGG | - | chr3.3:84902935-84902954 | None:intergenic | 35.0% | |
| ATAAGCAAAACTTGCATTCC+TGG | - | chr3.3:84902614-84902633 | None:intergenic | 35.0% | |
| ATCTCTTGAGCTTGAGAATT+TGG | + | chr3.3:84902903-84902922 | MS.gene32896:CDS | 35.0% | |
| ATGTTTATGCACACAAGAGT+TGG | - | chr3.3:84901906-84901925 | None:intergenic | 35.0% | |
| ATTGCCTGTTAAGGATTGTT+TGG | + | chr3.3:84902948-84902967 | MS.gene32896:CDS | 35.0% | |
| TAATGCCTGGTAATTGTAAC+TGG | + | chr3.3:84902672-84902691 | MS.gene32896:intron | 35.0% | |
| TCAACAATGGTATGTTTCAC+AGG | - | chr3.3:84901760-84901779 | None:intergenic | 35.0% | |
| TCACTAACATCACAGTTGAT+AGG | + | chr3.3:84902435-84902454 | MS.gene32896:intron | 35.0% | |
| TCAGTGGATAGTATCAGAAT+TGG | - | chr3.3:84902469-84902488 | None:intergenic | 35.0% | |
| TCTCAGCTTGAAACATATGA+TGG | + | chr3.3:84901874-84901893 | MS.gene32896:CDS | 35.0% | |
| TCTCTTGAGCTTGAGAATTT+GGG | + | chr3.3:84902904-84902923 | MS.gene32896:CDS | 35.0% | |
| TGTGAAACATACCATTGTTG+AGG | + | chr3.3:84901759-84901778 | MS.gene32896:CDS | 35.0% | |
| TGTGTGACTTAAGAATTACC+CGG | - | chr3.3:84902520-84902539 | None:intergenic | 35.0% | |
| TTGCCTGTTAAGGATTGTTT+GGG | + | chr3.3:84902949-84902968 | MS.gene32896:CDS | 35.0% | |
| ! | AAGAAAGAGTATATTCCACC+CGG | - | chr3.3:84902829-84902848 | None:intergenic | 35.0% |
| ! | TGTGAGCTACTATTTTGCAA+CGG | + | chr3.3:84902544-84902563 | MS.gene32896:intron | 35.0% |
| !! | GAAAAGAAAAGCACTGATTC+CGG | + | chr3.3:84901541-84901560 | MS.gene32896:CDS | 35.0% |
| !! | GTAAAGTCTCTTATTGACTC+CGG | + | chr3.3:84901026-84901045 | MS.gene32896:CDS | 35.0% |
| !!! | TTCAGATCATTTTTGGTCGT+TGG | + | chr3.3:84901839-84901858 | MS.gene32896:CDS | 35.0% |
| AGCATACGTTCATAAACCTC+AGG | - | chr3.3:84901790-84901809 | None:intergenic | 40.0% | |
| ATTGTTTGGGGGAAGAAGTT+TGG | + | chr3.3:84902962-84902981 | MS.gene32896:CDS | 40.0% | |
| CATATGTTTCAAGCTGAGAC+AGG | - | chr3.3:84901873-84901892 | None:intergenic | 40.0% | |
| CATGCTAAAGCTGTTTGTTC+AGG | + | chr3.3:84901667-84901686 | MS.gene32896:CDS | 40.0% | |
| CTCTTGAGCTTGAGAATTTG+GGG | + | chr3.3:84902905-84902924 | MS.gene32896:CDS | 40.0% | |
| GAAGAAGCTCATAAGCTTCT+TGG | - | chr3.3:84901217-84901236 | None:intergenic | 40.0% | |
| GACACAGAGTGGTTTGAATT+TGG | - | chr3.3:84901252-84901271 | None:intergenic | 40.0% | |
| GATATTCTTTGACACCTACG+GGG | + | chr3.3:84902750-84902769 | MS.gene32896:CDS | 40.0% | |
| GGATATTCTTTGACACCTAC+GGG | + | chr3.3:84902749-84902768 | MS.gene32896:CDS | 40.0% | |
| GGGATATTCTTTGACACCTA+CGG | + | chr3.3:84902748-84902767 | MS.gene32896:intron | 40.0% | |
| GGTGGTCATGTACTCAATAT+TGG | + | chr3.3:84901691-84901710 | MS.gene32896:CDS | 40.0% | |
| GTTTGTTTGGTTGTAATGCC+TGG | + | chr3.3:84902659-84902678 | MS.gene32896:intron | 40.0% | |
| TATGAGCTTCTTCTCAATGC+TGG | + | chr3.3:84901224-84901243 | MS.gene32896:CDS | 40.0% | |
| TCAACAATACAGGGAGATGT+TGG | - | chr3.3:84902804-84902823 | None:intergenic | 40.0% | |
| TCTTTCTTCAATGGCCTTTG+TGG | + | chr3.3:84902841-84902860 | MS.gene32896:CDS | 40.0% | |
| TGAGTGTAAAGCTGTGATGA+TGG | + | chr3.3:84901618-84901637 | MS.gene32896:CDS | 40.0% | |
| TGCCTGTTAAGGATTGTTTG+GGG | + | chr3.3:84902950-84902969 | MS.gene32896:CDS | 40.0% | |
| TTATGAACGTATGCTTCGCA+CGG | + | chr3.3:84901795-84901814 | MS.gene32896:CDS | 40.0% | |
| TTCTTGCATTGCGAAATCAC+CGG | - | chr3.3:84901189-84901208 | None:intergenic | 40.0% | |
| TTGTTTGGGGGAAGAAGTTT+GGG | + | chr3.3:84902963-84902982 | MS.gene32896:CDS | 40.0% | |
| ! | AAGGTGTCAAACACAGATAC+TGG | + | chr3.3:84902986-84903005 | MS.gene32896:CDS | 40.0% |
| ! | ATGCCTTCCATTAGAAGTGT+CGG | + | chr3.3:84901415-84901434 | MS.gene32896:intron | 40.0% |
| ! | GGGAAGGTTTTCTGTTTGTT+TGG | + | chr3.3:84902646-84902665 | MS.gene32896:intron | 40.0% |
| ! | TAGTGTTGGGAACAATTGCT+AGG | + | chr3.3:84901515-84901534 | MS.gene32896:CDS | 40.0% |
| !! | AATAGCACCGACACTTCTAA+TGG | - | chr3.3:84901425-84901444 | None:intergenic | 40.0% |
| !! | TAAAGCTGTGATGATGGCAT+GGG | + | chr3.3:84901624-84901643 | MS.gene32896:CDS | 40.0% |
| AAAGCTGTTTGTTCAGGAGG+TGG | + | chr3.3:84901673-84901692 | MS.gene32896:CDS | 45.0% | |
| ACAATACAGGGAGATGTTGG+TGG | - | chr3.3:84902801-84902820 | None:intergenic | 45.0% | |
| CAAGCTCAAGAGATACCAAG+TGG | - | chr3.3:84902897-84902916 | None:intergenic | 45.0% | |
| CATCTGCAGACTGACAAACA+GGG | - | chr3.3:84903032-84903051 | None:intergenic | 45.0% | |
| CCAAGTGGCAGTAAACAACA+TGG | - | chr3.3:84902882-84902901 | None:intergenic | 45.0% | |
| GAAGGAAGAAGAACTATGCG+AGG | + | chr3.3:84900977-84900996 | MS.gene32896:CDS | 45.0% | |
| GATTAAAGGTGAGACGGAGA+AGG | + | chr3.3:84901004-84901023 | MS.gene32896:CDS | 45.0% | |
| GCCTGTTAAGGATTGTTTGG+GGG | + | chr3.3:84902951-84902970 | MS.gene32896:CDS | 45.0% | |
| GCTAAAGCTGTTTGTTCAGG+AGG | + | chr3.3:84901670-84901689 | MS.gene32896:CDS | 45.0% | |
| GGTGATTTCGCAATGCAAGA+AGG | + | chr3.3:84901188-84901207 | MS.gene32896:CDS | 45.0% | |
| GTTAGTGTCAGTTTCGTGTC+AGG | - | chr3.3:84901290-84901309 | None:intergenic | 45.0% | |
| GTTGGGAACAATTGCTAGGA+AGG | + | chr3.3:84901519-84901538 | MS.gene32896:CDS | 45.0% | |
| TATGAACGTATGCTTCGCAC+GGG | + | chr3.3:84901796-84901815 | MS.gene32896:CDS | 45.0% | |
| TCATCTGCAGACTGACAAAC+AGG | - | chr3.3:84903033-84903052 | None:intergenic | 45.0% | |
| TCCCCCAAACAATCCTTAAC+AGG | - | chr3.3:84902955-84902974 | None:intergenic | 45.0% | |
| TCTCCCTGTATTGTTGAAGC+CGG | + | chr3.3:84902807-84902826 | MS.gene32896:CDS | 45.0% | |
| TGACACTAACACGTCAACAC+CGG | + | chr3.3:84901300-84901319 | MS.gene32896:intron | 45.0% | |
| TTAGCATGAGCCTCCATCAA+TGG | - | chr3.3:84901655-84901674 | None:intergenic | 45.0% | |
| TTCTTCAATGGCCTTTGTGG+TGG | + | chr3.3:84902844-84902863 | MS.gene32896:CDS | 45.0% | |
| ! | CCATGTTGTTTACTGCCACT+TGG | + | chr3.3:84902879-84902898 | MS.gene32896:CDS | 45.0% |
| !! | GTAAAGCTGTGATGATGGCA+TGG | + | chr3.3:84901623-84901642 | MS.gene32896:CDS | 45.0% |
| !! | TGCATTCCTGGAAAGCATCT+GGG | - | chr3.3:84902602-84902621 | None:intergenic | 45.0% |
| !! | TTGCATTCCTGGAAAGCATC+TGG | - | chr3.3:84902603-84902622 | None:intergenic | 45.0% |
| ATGGGAGAAGCCATTGATGG+AGG | + | chr3.3:84901642-84901661 | MS.gene32896:CDS | 50.0% | |
| CACCCGGCTTCAACAATACA+GGG | - | chr3.3:84902813-84902832 | None:intergenic | 50.0% | |
| CATTGTTGAGGCTCATCCTG+AGG | + | chr3.3:84901771-84901790 | MS.gene32896:CDS | 50.0% | |
| CCCGTCGAAATGAGTAACGT+CGG | - | chr3.3:84901054-84901073 | None:intergenic | 50.0% | |
| CCGACGTTACTCATTTCGAC+GGG | + | chr3.3:84901051-84901070 | MS.gene32896:CDS | 50.0% | |
| CGACGTTACTCATTTCGACG+GGG | + | chr3.3:84901052-84901071 | MS.gene32896:CDS | 50.0% | |
| CTCAGGATGAGCCTCAACAA+TGG | - | chr3.3:84901773-84901792 | None:intergenic | 50.0% | |
| CTCCCTGTATTGTTGAAGCC+GGG | + | chr3.3:84902808-84902827 | MS.gene32896:CDS | 50.0% | |
| CTGTTTCCCAGATGCTTTCC+AGG | + | chr3.3:84902593-84902612 | MS.gene32896:intron | 50.0% | |
| CTTATGCTTGCCGCAAAGCA+CGG | + | chr3.3:84901089-84901108 | MS.gene32896:CDS | 50.0% | |
| GAGAGAAGGATGTCGAGGAT+GGG | - | chr3.3:84901122-84901141 | None:intergenic | 50.0% | |
| GCCCACGTCAAAGAGTTTAG+CGG | - | chr3.3:84902704-84902723 | None:intergenic | 50.0% | |
| GCCGACGTTACTCATTTCGA+CGG | + | chr3.3:84901050-84901069 | MS.gene32896:CDS | 50.0% | |
| GCCGCTAAACTCTTTGACGT+GGG | + | chr3.3:84902700-84902719 | MS.gene32896:intron | 50.0% | |
| GGAAGAAGAACTATGCGAGG+CGG | + | chr3.3:84900980-84900999 | MS.gene32896:CDS | 50.0% | |
| GTTACTCATTTCGACGGGGA+TGG | + | chr3.3:84901056-84901075 | MS.gene32896:CDS | 50.0% | |
| TGCCGCTAAACTCTTTGACG+TGG | + | chr3.3:84902699-84902718 | MS.gene32896:intron | 50.0% | |
| TGCTTTGCGGCAAGCATAAG+AGG | - | chr3.3:84901089-84901108 | None:intergenic | 50.0% | |
| TTGCATTGCGAAATCACCGG+CGG | - | chr3.3:84901186-84901205 | None:intergenic | 50.0% | |
| TTGGGGGAAGAAGTTTGGGA+AGG | + | chr3.3:84902967-84902986 | MS.gene32896:CDS | 50.0% | |
| ! | GCACCGACACTTCTAATGGA+AGG | - | chr3.3:84901421-84901440 | None:intergenic | 50.0% |
| !! | GAAGGAGAAAGAGCGTTCCA+AGG | - | chr3.3:84901155-84901174 | None:intergenic | 50.0% |
| AACGTATGCTTCGCACGGGT+TGG | + | chr3.3:84901800-84901819 | MS.gene32896:CDS | 55.0% | |
| ACGTATGCTTCGCACGGGTT+GGG | + | chr3.3:84901801-84901820 | MS.gene32896:CDS | 55.0% | |
| CCACCCGGCTTCAACAATAC+AGG | - | chr3.3:84902814-84902833 | None:intergenic | 55.0% | |
| CCTGTATTGTTGAAGCCGGG+TGG | + | chr3.3:84902811-84902830 | MS.gene32896:CDS | 55.0% | |
| CTATGCGAGGCGGCGATTAA+AGG | + | chr3.3:84900990-84901009 | MS.gene32896:CDS | 55.0% | |
| CTGCAGACTGACAAACAGGG+AGG | - | chr3.3:84903029-84903048 | None:intergenic | 55.0% | |
| GAAATCACCGGCGGAAAGGT+TGG | - | chr3.3:84901177-84901196 | None:intergenic | 55.0% | |
| GAAATGAGTAACGTCGGCGC+CGG | - | chr3.3:84901048-84901067 | None:intergenic | 55.0% | |
| GGAGAGAAGGATGTCGAGGA+TGG | - | chr3.3:84901123-84901142 | None:intergenic | 55.0% | |
| GGCATGGGAGAAGCCATTGA+TGG | + | chr3.3:84901639-84901658 | MS.gene32896:CDS | 55.0% | |
| GGCGGCGATTAAAGGTGAGA+CGG | + | chr3.3:84900998-84901017 | MS.gene32896:CDS | 55.0% | |
| GTCGTCATAGTACTCCCCGT+AGG | - | chr3.3:84902767-84902786 | None:intergenic | 55.0% | |
| TCTCCTTCCAACCTTTCCGC+CGG | + | chr3.3:84901167-84901186 | MS.gene32896:CDS | 55.0% | |
| TTGCGAAATCACCGGCGGAA+AGG | - | chr3.3:84901181-84901200 | None:intergenic | 55.0% | |
| !! | AAGAGCGTTCCAAGGAGCAC+CGG | - | chr3.3:84901147-84901166 | None:intergenic | 55.0% |
| CTCGACATCCTTCTCTCCGC+CGG | + | chr3.3:84901125-84901144 | MS.gene32896:CDS | 60.0% | |
| GGATGTCGAGGATGGGTGCA+TGG | - | chr3.3:84901115-84901134 | None:intergenic | 60.0% | |
| TCACCGGCGGAAAGGTTGGA+AGG | - | chr3.3:84901173-84901192 | None:intergenic | 60.0% | |
| ! | CGTATGCTTCGCACGGGTTG+GGG | + | chr3.3:84901802-84901821 | MS.gene32896:CDS | 60.0% |
| CGGCGGAGAGAAGGATGTCG+AGG | - | chr3.3:84901127-84901146 | None:intergenic | 65.0% | |
| GGGTGCATGGCCGTGCTTTG+CGG | - | chr3.3:84901102-84901121 | None:intergenic | 65.0% | |
| TTCTCTCCGCCGGTGCTCCT+TGG | + | chr3.3:84901135-84901154 | MS.gene32896:CDS | 65.0% | |
| !! | AAGGAGCACCGGCGGAGAGA+AGG | - | chr3.3:84901136-84901155 | None:intergenic | 65.0% |
| !! | AGCGTTCCAAGGAGCACCGG+CGG | - | chr3.3:84901144-84901163 | None:intergenic | 65.0% |
| !! | TCGCACGGGTTGGGGTGAGA+AGG | + | chr3.3:84901810-84901829 | MS.gene32896:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84900975 | 84903062 | 84900975 | ID=MS.gene32896 |
| chr3.3 | mRNA | 84900975 | 84903062 | 84900975 | ID=MS.gene32896.t1;Parent=MS.gene32896 |
| chr3.3 | exon | 84900975 | 84901245 | 84900975 | ID=MS.gene32896.t1.exon1;Parent=MS.gene32896.t1 |
| chr3.3 | CDS | 84900975 | 84901245 | 84900975 | ID=cds.MS.gene32896.t1;Parent=MS.gene32896.t1 |
| chr3.3 | exon | 84901500 | 84901895 | 84901500 | ID=MS.gene32896.t1.exon2;Parent=MS.gene32896.t1 |
| chr3.3 | CDS | 84901500 | 84901895 | 84901500 | ID=cds.MS.gene32896.t1;Parent=MS.gene32896.t1 |
| chr3.3 | exon | 84902749 | 84903062 | 84902749 | ID=MS.gene32896.t1.exon3;Parent=MS.gene32896.t1 |
| chr3.3 | CDS | 84902749 | 84903062 | 84902749 | ID=cds.MS.gene32896.t1;Parent=MS.gene32896.t1 |
| Gene Sequence |
| Protein sequence |
