Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32906.t1 | XP_024634816.1 | 77.5 | 552 | 66 | 5 | 1 | 498 | 1 | 548 | 7.80E-176 | 627.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32906.t1 | Q9LVC3 | 29.7 | 316 | 218 | 3 | 180 | 494 | 277 | 589 | 5.1e-35 | 150.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32906.t1 | A0A072V180 | 88.0 | 534 | 25 | 4 | 1 | 499 | 1 | 530 | 7.1e-171 | 610.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32906 | MS.gene60129 | PPI |
| MS.gene88489 | MS.gene32906 | PPI |
| MS.gene016597 | MS.gene32906 | PPI |
| MS.gene32906 | MS.gene056242 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32906.t1 | MTR_3g102650 | 89.513 | 534 | 17 | 4 | 1 | 499 | 1 | 530 | 0.0 | 911 |
| MS.gene32906.t1 | MTR_2g008770 | 37.778 | 315 | 194 | 1 | 180 | 494 | 426 | 738 | 1.97e-66 | 229 |
| MS.gene32906.t1 | MTR_5g063650 | 35.549 | 346 | 217 | 5 | 152 | 496 | 367 | 707 | 1.96e-60 | 213 |
| MS.gene32906.t1 | MTR_1g106975 | 29.204 | 339 | 232 | 3 | 160 | 494 | 113 | 447 | 3.30e-44 | 163 |
| MS.gene32906.t1 | MTR_2g006930 | 30.938 | 320 | 211 | 5 | 181 | 494 | 105 | 420 | 1.07e-43 | 161 |
| MS.gene32906.t1 | MTR_1g100230 | 29.245 | 318 | 218 | 4 | 181 | 494 | 90 | 404 | 3.42e-41 | 154 |
| MS.gene32906.t1 | MTR_1g051630 | 96.875 | 64 | 2 | 0 | 260 | 323 | 38 | 101 | 2.61e-37 | 134 |
| MS.gene32906.t1 | MTR_5g062070 | 29.644 | 253 | 177 | 1 | 214 | 466 | 22 | 273 | 1.00e-33 | 131 |
| MS.gene32906.t1 | MTR_2g036900 | 27.134 | 328 | 220 | 7 | 183 | 501 | 659 | 976 | 5.01e-32 | 132 |
| MS.gene32906.t1 | MTR_2g006940 | 26.978 | 278 | 189 | 3 | 181 | 455 | 112 | 378 | 8.25e-30 | 121 |
| MS.gene32906.t1 | MTR_1g094630 | 26.462 | 325 | 211 | 6 | 142 | 460 | 621 | 923 | 5.15e-29 | 122 |
| MS.gene32906.t1 | MTR_4g064670 | 24.654 | 434 | 255 | 11 | 101 | 484 | 535 | 946 | 2.54e-28 | 120 |
| MS.gene32906.t1 | MTR_4g064670 | 24.654 | 434 | 255 | 11 | 101 | 484 | 606 | 1017 | 3.31e-28 | 120 |
| MS.gene32906.t1 | MTR_2g036900 | 29.183 | 257 | 177 | 3 | 183 | 438 | 659 | 911 | 4.18e-28 | 119 |
| MS.gene32906.t1 | MTR_2g097670 | 25.450 | 389 | 239 | 10 | 101 | 460 | 627 | 993 | 2.40e-27 | 117 |
| MS.gene32906.t1 | MTR_5g080390 | 25.455 | 385 | 251 | 11 | 99 | 460 | 582 | 953 | 1.28e-26 | 115 |
| MS.gene32906.t1 | MTR_1g094630 | 28.500 | 200 | 138 | 3 | 185 | 383 | 647 | 842 | 1.23e-18 | 90.1 |
| MS.gene32906.t1 | MTR_2g097670 | 24.756 | 307 | 186 | 8 | 101 | 383 | 627 | 912 | 2.21e-18 | 89.7 |
| MS.gene32906.t1 | MTR_2g055280 | 76.744 | 43 | 10 | 0 | 245 | 287 | 31 | 73 | 4.79e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32906.t1 | AT5G56510 | 37.342 | 316 | 194 | 3 | 180 | 494 | 277 | 589 | 2.53e-63 | 218 |
| MS.gene32906.t1 | AT5G56510 | 37.342 | 316 | 194 | 3 | 180 | 494 | 277 | 589 | 2.53e-63 | 218 |
| MS.gene32906.t1 | AT5G56510 | 37.342 | 316 | 194 | 3 | 180 | 494 | 277 | 589 | 2.53e-63 | 218 |
| MS.gene32906.t1 | AT5G56510 | 37.342 | 316 | 194 | 3 | 180 | 494 | 277 | 589 | 2.53e-63 | 218 |
| MS.gene32906.t1 | AT5G56510 | 37.342 | 316 | 194 | 3 | 180 | 494 | 277 | 589 | 2.53e-63 | 218 |
| MS.gene32906.t1 | AT1G22240 | 35.962 | 317 | 199 | 3 | 180 | 496 | 198 | 510 | 6.16e-62 | 212 |
| MS.gene32906.t1 | AT5G56510 | 37.762 | 286 | 176 | 2 | 180 | 464 | 277 | 561 | 5.89e-59 | 206 |
| MS.gene32906.t1 | AT4G08840 | 37.580 | 314 | 190 | 4 | 183 | 496 | 244 | 551 | 2.28e-58 | 204 |
| MS.gene32906.t1 | AT1G78160 | 34.700 | 317 | 203 | 3 | 180 | 496 | 333 | 645 | 4.43e-58 | 205 |
| MS.gene32906.t1 | AT1G78160 | 34.700 | 317 | 203 | 3 | 180 | 496 | 335 | 647 | 4.48e-58 | 205 |
| MS.gene32906.t1 | AT5G43090 | 33.437 | 323 | 205 | 5 | 182 | 499 | 210 | 527 | 6.95e-52 | 186 |
| MS.gene32906.t1 | AT1G35730 | 35.664 | 286 | 181 | 2 | 180 | 465 | 249 | 531 | 2.19e-51 | 185 |
| MS.gene32906.t1 | AT1G35730 | 35.664 | 286 | 181 | 2 | 180 | 465 | 255 | 537 | 2.30e-51 | 185 |
| MS.gene32906.t1 | AT4G08560 | 36.458 | 288 | 170 | 3 | 182 | 459 | 152 | 436 | 3.22e-49 | 177 |
| MS.gene32906.t1 | AT1G35750 | 33.438 | 317 | 205 | 4 | 180 | 496 | 213 | 523 | 3.29e-46 | 170 |
| MS.gene32906.t1 | AT5G43110 | 33.028 | 327 | 208 | 6 | 178 | 499 | 198 | 518 | 3.51e-43 | 161 |
| MS.gene32906.t1 | AT3G20250 | 25.474 | 475 | 317 | 13 | 48 | 501 | 442 | 900 | 4.16e-32 | 132 |
| MS.gene32906.t1 | AT3G20250 | 25.684 | 475 | 316 | 13 | 48 | 501 | 478 | 936 | 5.69e-32 | 131 |
| MS.gene32906.t1 | AT3G20250 | 25.684 | 475 | 316 | 13 | 48 | 501 | 478 | 936 | 5.69e-32 | 131 |
| MS.gene32906.t1 | AT4G25880 | 27.439 | 328 | 223 | 8 | 178 | 498 | 530 | 849 | 6.72e-31 | 128 |
| MS.gene32906.t1 | AT4G25880 | 27.439 | 328 | 223 | 8 | 178 | 498 | 530 | 849 | 6.72e-31 | 128 |
| MS.gene32906.t1 | AT4G25880 | 27.439 | 328 | 223 | 8 | 178 | 498 | 530 | 849 | 6.81e-31 | 128 |
| MS.gene32906.t1 | AT3G10360 | 29.066 | 289 | 194 | 5 | 178 | 460 | 662 | 945 | 4.91e-30 | 125 |
| MS.gene32906.t1 | AT4G25880 | 27.439 | 328 | 219 | 9 | 182 | 498 | 524 | 843 | 9.19e-28 | 119 |
| MS.gene32906.t1 | AT4G25880 | 27.439 | 328 | 219 | 9 | 182 | 498 | 524 | 843 | 9.91e-28 | 118 |
| MS.gene32906.t1 | AT2G29200 | 24.854 | 342 | 224 | 6 | 171 | 484 | 621 | 957 | 1.68e-25 | 112 |
| MS.gene32906.t1 | AT2G29200 | 24.854 | 342 | 224 | 6 | 171 | 484 | 621 | 957 | 1.68e-25 | 112 |
| MS.gene32906.t1 | AT2G29190 | 25.826 | 333 | 214 | 6 | 180 | 484 | 634 | 961 | 2.86e-25 | 111 |
| MS.gene32906.t1 | AT2G29190 | 25.826 | 333 | 214 | 6 | 180 | 484 | 634 | 961 | 2.86e-25 | 111 |
| MS.gene32906.t1 | AT2G29140 | 24.269 | 342 | 226 | 6 | 171 | 484 | 617 | 953 | 1.77e-23 | 105 |
| MS.gene32906.t1 | AT2G29140 | 24.269 | 342 | 226 | 6 | 171 | 484 | 617 | 953 | 1.77e-23 | 105 |
| MS.gene32906.t1 | AT5G09610 | 25.339 | 221 | 157 | 4 | 260 | 478 | 263 | 477 | 3.98e-16 | 81.6 |
| MS.gene32906.t1 | AT5G60180 | 25.714 | 245 | 179 | 2 | 224 | 467 | 48 | 290 | 8.65e-15 | 76.3 |
| MS.gene32906.t1 | AT5G60110 | 25.714 | 245 | 179 | 2 | 224 | 467 | 48 | 290 | 3.27e-14 | 74.3 |
| MS.gene32906.t1 | AT5G59280 | 27.358 | 212 | 148 | 4 | 252 | 460 | 79 | 287 | 6.10e-14 | 73.6 |
| MS.gene32906.t1 | AT1G21620 | 26.087 | 230 | 135 | 5 | 235 | 461 | 69 | 266 | 9.94e-14 | 72.8 |
| MS.gene32906.t1 | AT1G35850 | 27.830 | 212 | 147 | 4 | 252 | 460 | 4 | 212 | 2.37e-13 | 70.9 |
| MS.gene32906.t1 | AT1G35850 | 30.968 | 155 | 103 | 3 | 309 | 460 | 106 | 259 | 7.21e-12 | 67.0 |
Find 121 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGCATTGAATAAATTTA+AGG | 0.145874 | 3.3:+84836069 | MS.gene32906:CDS |
| GCAAGAAGTGATGGCAAATT+TGG | 0.156557 | 3.3:+84834511 | MS.gene32906:CDS |
| CCTTATTATAACTATAACTA+TGG | 0.167753 | 3.3:+84834107 | MS.gene32906:CDS |
| TATTGTTCTGGTTCTGGTTT+TGG | 0.212136 | 3.3:-84833908 | None:intergenic |
| GTTAATGTTAATAATGTTAA+TGG | 0.214484 | 3.3:+84834410 | MS.gene32906:CDS |
| CAAGAAGTGATGGCAAATTT+GGG | 0.276799 | 3.3:+84834512 | MS.gene32906:CDS |
| TATTGTTATTGTTCTGGTTC+TGG | 0.279753 | 3.3:-84833914 | None:intergenic |
| CCGAAAGATTGATTAGGATT+AGG | 0.291834 | 3.3:-84834023 | None:intergenic |
| TAGCAATATGTTTGGCAAAA+AGG | 0.298521 | 3.3:+84836673 | MS.gene32906:CDS |
| TATGGATATTGTTATTGTTC+TGG | 0.298834 | 3.3:-84833920 | None:intergenic |
| CCATAGTTATAGTTATAATA+AGG | 0.308433 | 3.3:-84834107 | None:intergenic |
| CCTAATCAATCTTTCGGTTA+TGG | 0.311110 | 3.3:+84834029 | MS.gene32906:CDS |
| GCTTGTTCTAGGGTTTGATT+AGG | 0.312082 | 3.3:-84833975 | None:intergenic |
| TCTCTTTCCTGCAATAAATA+TGG | 0.314796 | 3.3:+84835917 | MS.gene32906:CDS |
| TTTGAGCCATGAAAGGGTTT+TGG | 0.330120 | 3.3:-84833944 | None:intergenic |
| ATTACTGCCATATTTATTGC+AGG | 0.345089 | 3.3:-84835924 | None:intergenic |
| AGGCTCCTTACGGATCCTTA+TGG | 0.349807 | 3.3:+84836031 | MS.gene32906:CDS |
| AATAATAATAACTTAGCTTA+TGG | 0.353348 | 3.3:+84834179 | MS.gene32906:CDS |
| AAGTTATTATTATTCCTAAC+AGG | 0.357786 | 3.3:-84834170 | None:intergenic |
| CTAACAGGTGTATTGAAATC+AGG | 0.360201 | 3.3:-84834155 | None:intergenic |
| CCTAATCCTAATCAATCTTT+CGG | 0.366022 | 3.3:+84834023 | MS.gene32906:CDS |
| GTAAGGAGCCTTGTTACATT+AGG | 0.367914 | 3.3:-84836019 | None:intergenic |
| TGGAGCTATTGTATTGTCTA+AGG | 0.373255 | 3.3:+84834915 | MS.gene32906:CDS |
| AGAATTTGCCTTAGTCTTCA+TGG | 0.374945 | 3.3:+84834701 | MS.gene32906:CDS |
| GTATTGTCTAAGGATATTAA+TGG | 0.390496 | 3.3:+84834925 | MS.gene32906:CDS |
| TAATCACATGTGTGAGTTGA+TGG | 0.391134 | 3.3:+84834571 | MS.gene32906:CDS |
| CTTATGATGTAAATCAGATT+AGG | 0.392575 | 3.3:+84834243 | MS.gene32906:CDS |
| CCATAACCAAAACCCTTTCA+TGG | 0.399823 | 3.3:+84833938 | MS.gene32906:CDS |
| CTGATTTCAATACACCTGTT+AGG | 0.405041 | 3.3:+84834156 | MS.gene32906:CDS |
| TAAGAATGCCTTGGAGGAAC+TGG | 0.415665 | 3.3:+84836625 | MS.gene32906:CDS |
| AATTAGACCTCTTTGCTCTC+TGG | 0.422483 | 3.3:-84834875 | None:intergenic |
| TATTAGCTGAAGATTGTTAC+GGG | 0.425499 | 3.3:+84835719 | MS.gene32906:CDS |
| CCATAACCGAAAGATTGATT+AGG | 0.431264 | 3.3:-84834029 | None:intergenic |
| GGTTGATCCTATTGGTTATG+AGG | 0.433190 | 3.3:+84834592 | MS.gene32906:CDS |
| CTATTAGCTGAAGATTGTTA+CGG | 0.439528 | 3.3:+84835718 | MS.gene32906:CDS |
| CTGAAAATACCAACAGTCTC+AGG | 0.440858 | 3.3:+84835860 | MS.gene32906:CDS |
| GTAATAACCTCATAACCAAT+AGG | 0.443299 | 3.3:-84834599 | None:intergenic |
| AAAGGTGCTTGATAAGTATG+AGG | 0.451082 | 3.3:+84836691 | MS.gene32906:CDS |
| GAACAGTTTATGGACTATAG+AGG | 0.452254 | 3.3:+84836938 | MS.gene32906:CDS |
| CTTGTTCTAGGGTTTGATTA+GGG | 0.459212 | 3.3:-84833974 | None:intergenic |
| ATTATGTCAGCTTTGTCCCC+TGG | 0.464794 | 3.3:+84834895 | MS.gene32906:CDS |
| ATGAATCCTCTGTGCCAACT+TGG | 0.471920 | 3.3:+84834375 | MS.gene32906:CDS |
| CACTGTGATCGAGGTGATAA+CGG | 0.474336 | 3.3:-84833861 | None:intergenic |
| CTTGTTGTGTGTTACTGGCA+TGG | 0.475357 | 3.3:+84836890 | MS.gene32906:CDS |
| TAGCAATTCTATAATGATGC+AGG | 0.476010 | 3.3:-84835990 | None:intergenic |
| TGGCAAATTTGGGGCCTGAA+GGG | 0.481344 | 3.3:+84834522 | MS.gene32906:CDS |
| ATGATGCGTAGCAATATGTT+TGG | 0.481616 | 3.3:+84836665 | MS.gene32906:CDS |
| AAAGACTCAGATTGTTCTGT+TGG | 0.482072 | 3.3:+84834652 | MS.gene32906:CDS |
| TTATGAGGTTATTACAAAGA+TGG | 0.482412 | 3.3:+84834607 | MS.gene32906:CDS |
| TAACAATCTTCAGCTAATAG+TGG | 0.485810 | 3.3:-84835715 | None:intergenic |
| TTAGCTTATGGTAGAGGTAG+AGG | 0.486983 | 3.3:+84834191 | MS.gene32906:CDS |
| GAATTTGCCTTAGTCTTCAT+GGG | 0.497383 | 3.3:+84834702 | MS.gene32906:CDS |
| ATACTGCAGCACACAACATC+CGG | 0.501075 | 3.3:-84835629 | None:intergenic |
| GGCAAATTTGGGGCCTGAAG+GGG | 0.504390 | 3.3:+84834523 | MS.gene32906:CDS |
| CTTAATGATTATGATTACTC+TGG | 0.507034 | 3.3:+84834065 | MS.gene32906:CDS |
| TAATGTAACAAGGCTCCTTA+CGG | 0.508224 | 3.3:+84836021 | MS.gene32906:CDS |
| CCTAACGATTCTGTCGATAA+CGG | 0.508868 | 3.3:+84833831 | MS.gene32906:CDS |
| ATTCATTAAGAATGCCTTGG+AGG | 0.509107 | 3.3:+84836619 | MS.gene32906:CDS |
| TTAGACAATACAATAGCTCC+AGG | 0.510206 | 3.3:-84834913 | None:intergenic |
| CATTGGTTTGATGAATTTCG+TGG | 0.510977 | 3.3:+84834443 | MS.gene32906:CDS |
| ATACAAATTGCTGCTGAAGC+TGG | 0.513224 | 3.3:-84835895 | None:intergenic |
| AATAACTTAGCTTATGGTAG+AGG | 0.515646 | 3.3:+84834185 | MS.gene32906:CDS |
| TCGTGGGAGGGTTTATTCGT+TGG | 0.516213 | 3.3:+84834460 | MS.gene32906:CDS |
| AAATATACCCATGAAGACTA+AGG | 0.517695 | 3.3:-84834709 | None:intergenic |
| GCTGCTGAAGCTGGTGGTGT+AGG | 0.519438 | 3.3:-84835886 | None:intergenic |
| TTTCGATTTGAGCCATGAAA+GGG | 0.528174 | 3.3:-84833950 | None:intergenic |
| ATGGCAAATTTGGGGCCTGA+AGG | 0.531879 | 3.3:+84834521 | MS.gene32906:CDS |
| GTTTGATGAATTTCGTGGGA+GGG | 0.531922 | 3.3:+84834448 | MS.gene32906:CDS |
| GAGTTGATGGTTGATCCTAT+TGG | 0.533865 | 3.3:+84834584 | MS.gene32906:CDS |
| CTGATGACAAAATTTCCATA+AGG | 0.535242 | 3.3:-84836046 | None:intergenic |
| TTCATTGCAATGGAAGCTGC+CGG | 0.538658 | 3.3:+84836980 | MS.gene32906:CDS |
| CCGTTATCGACAGAATCGTT+AGG | 0.539438 | 3.3:-84833831 | None:intergenic |
| CTTATTATAACTATAACTAT+GGG | 0.545461 | 3.3:+84834108 | MS.gene32906:CDS |
| TGAATCCTCTGTGCCAACTT+GGG | 0.546933 | 3.3:+84834376 | MS.gene32906:CDS |
| TAGATTCATTAAGAATGCCT+TGG | 0.547602 | 3.3:+84836616 | MS.gene32906:CDS |
| ACAGCATCATTAACCCAAGT+TGG | 0.549023 | 3.3:-84834389 | None:intergenic |
| TCGTTCTGTTGAGAAACTGT+TGG | 0.549400 | 3.3:+84834840 | MS.gene32906:CDS |
| TGAGGTTATTACAAAGATGG+TGG | 0.551949 | 3.3:+84834610 | MS.gene32906:CDS |
| ATCGACAGAATCGTTAGGAA+TGG | 0.551977 | 3.3:-84833826 | None:intergenic |
| GATTATGATTACTCTGGTGT+TGG | 0.556049 | 3.3:+84834071 | MS.gene32906:CDS |
| TCTTAGTTGCTCCTTGAGCA+TGG | 0.557687 | 3.3:-84835660 | None:intergenic |
| TAAATATGGCAGTAATGTAG+TGG | 0.558149 | 3.3:+84835931 | MS.gene32906:CDS |
| TAAGAACTCAACCGCGGCGA+CGG | 0.561032 | 3.3:-84834224 | None:intergenic |
| AATATCAGAACTTGTGAGAC+CGG | 0.561181 | 3.3:-84836999 | None:intergenic |
| TGTGTGTTACTGGCATGGAA+TGG | 0.564297 | 3.3:+84836895 | MS.gene32906:CDS |
| TGTTACTGGCATGGAATGGA+TGG | 0.571812 | 3.3:+84836899 | MS.gene32906:CDS |
| GAACTCAACCGCGGCGACGG+CGG | 0.574065 | 3.3:-84834221 | None:intergenic |
| ATTGGTTTGATGAATTTCGT+GGG | 0.575858 | 3.3:+84834444 | MS.gene32906:CDS |
| TGCTTCGACCAGTTCCTCCA+AGG | 0.576223 | 3.3:-84836633 | None:intergenic |
| TCACTTTCAAGAGATAAGAC+CGG | 0.578672 | 3.3:+84835610 | MS.gene32906:CDS |
| TTTACCTCAGTATCAGCATG+TGG | 0.579642 | 3.3:-84834982 | None:intergenic |
| TAGACCTCTTTGCTCTCTGG+TGG | 0.585063 | 3.3:-84834872 | None:intergenic |
| TTTCCCACATGCTGATACTG+AGG | 0.590378 | 3.3:+84834978 | MS.gene32906:CDS |
| AATTTCTTGCAATAACTCCC+AGG | 0.592318 | 3.3:-84835582 | None:intergenic |
| GAATTTCGCCGCCGTCGCCG+CGG | 0.598215 | 3.3:+84834213 | MS.gene32906:CDS |
| GTATTGAAATCAGGTTGACT+AGG | 0.599712 | 3.3:-84834146 | None:intergenic |
| GAGGGTTTATTCGTTGGCGA+AGG | 0.603103 | 3.3:+84834466 | MS.gene32906:CDS |
| GGTTTGATGAATTTCGTGGG+AGG | 0.614649 | 3.3:+84834447 | MS.gene32906:CDS |
| CATTGCAATGAAAACAGCTA+CGG | 0.617401 | 3.3:-84836969 | None:intergenic |
| GGATATTAATGGTCATCGTG+TGG | 0.622294 | 3.3:+84834936 | MS.gene32906:CDS |
| AAGGTGCTTGATAAGTATGA+GGG | 0.623255 | 3.3:+84836692 | MS.gene32906:CDS |
| TGTAGGTTGCCTGAGACTGT+TGG | 0.624539 | 3.3:-84835869 | None:intergenic |
| AATTTCCATAAGGATCCGTA+AGG | 0.628856 | 3.3:-84836036 | None:intergenic |
| TATTGTGTTAGCCATGCTCA+AGG | 0.630724 | 3.3:+84835649 | MS.gene32906:CDS |
| AAGAAGTGATGGCAAATTTG+GGG | 0.640787 | 3.3:+84834513 | MS.gene32906:CDS |
| TAACTCAACCACTGTGATCG+AGG | 0.642608 | 3.3:-84833870 | None:intergenic |
| CAAATTGCTGCTGAAGCTGG+TGG | 0.647530 | 3.3:-84835892 | None:intergenic |
| TTACCTCAGTATCAGCATGT+GGG | 0.651847 | 3.3:-84834981 | None:intergenic |
| ACTGGCATGGAATGGATGGA+AGG | 0.654971 | 3.3:+84836903 | MS.gene32906:CDS |
| TAGACAATACAATAGCTCCA+GGG | 0.658049 | 3.3:-84834912 | None:intergenic |
| GTTCTGTTGGTCACACACCA+TGG | 0.665936 | 3.3:+84834665 | MS.gene32906:CDS |
| TAAATGATCCTAATGTAACA+AGG | 0.666099 | 3.3:+84836011 | MS.gene32906:CDS |
| AGACAATACAATAGCTCCAG+GGG | 0.668835 | 3.3:-84834911 | None:intergenic |
| GTTACCACCAGAGAGCAAAG+AGG | 0.674944 | 3.3:+84834868 | MS.gene32906:CDS |
| TCGTTGGCGAAGGATACACA+TGG | 0.676587 | 3.3:+84834476 | MS.gene32906:CDS |
| TTAATGGAATGAATGCACAT+TGG | 0.681427 | 3.3:+84834426 | MS.gene32906:CDS |
| TTCTGATAAACTGAGCACCA+TGG | 0.689610 | 3.3:-84834682 | None:intergenic |
| ATTAACCCAAGTTGGCACAG+AGG | 0.702236 | 3.3:-84834381 | None:intergenic |
| CGTTGGCGAAGGATACACAT+GGG | 0.721395 | 3.3:+84834477 | MS.gene32906:CDS |
| CGTTATCACCTCGATCACAG+TGG | 0.749783 | 3.3:+84833862 | MS.gene32906:CDS |
| ACATCATAAGAACTCAACCG+CGG | 0.776372 | 3.3:-84834230 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAAAAAAAACAAAA+AGG | + | chr3.3:84836823-84836842 | MS.gene32906:intron | 10.0% |
| !! | AAAAACAAAAAAAACAAAAA+GGG | + | chr3.3:84836824-84836843 | MS.gene32906:intron | 10.0% |
| !! | ATCTATTTAAATGTAATTTA+AGG | + | chr3.3:84835110-84835129 | MS.gene32906:intron | 10.0% |
| !!! | TTTTGTTTTTTTTGTTTTTT+TGG | - | chr3.3:84836823-84836842 | None:intergenic | 10.0% |
| !! | AATAATAATAACTTAGCTTA+TGG | + | chr3.3:84834179-84834198 | MS.gene32906:CDS | 15.0% |
| !! | CTTATTATAACTATAACTAT+GGG | + | chr3.3:84834108-84834127 | MS.gene32906:CDS | 15.0% |
| !! | GTTAATGTTAATAATGTTAA+TGG | + | chr3.3:84834410-84834429 | MS.gene32906:CDS | 15.0% |
| !!! | TTAACACACTAATTTTAAAA+GGG | - | chr3.3:84836771-84836790 | None:intergenic | 15.0% |
| !!! | TTTTTCTTATTCAATAAACA+GGG | + | chr3.3:84836590-84836609 | MS.gene32906:intron | 15.0% |
| !! | AAAATCTTAGTCAATTTATG+AGG | - | chr3.3:84835141-84835160 | None:intergenic | 20.0% |
| !! | AAGTTATTATTATTCCTAAC+AGG | - | chr3.3:84834173-84834192 | None:intergenic | 20.0% |
| !! | AATAAACTGCTTAAAAATTG+AGG | - | chr3.3:84836367-84836386 | None:intergenic | 20.0% |
| !! | ATTAGGTATAATCATTTGAA+TGG | + | chr3.3:84834260-84834279 | MS.gene32906:intron | 20.0% |
| !! | CACTATTATTAGATAAATAC+CGG | + | chr3.3:84835500-84835519 | MS.gene32906:intron | 20.0% |
| !! | CCATAGTTATAGTTATAATA+AGG | - | chr3.3:84834110-84834129 | None:intergenic | 20.0% |
| !! | CCTTATTATAACTATAACTA+TGG | + | chr3.3:84834107-84834126 | MS.gene32906:CDS | 20.0% |
| !! | TAAAAAATGTGGATAAAGAA+AGG | - | chr3.3:84835371-84835390 | None:intergenic | 20.0% |
| !! | TACTGCATTGAATAAATTTA+AGG | + | chr3.3:84836069-84836088 | MS.gene32906:CDS | 20.0% |
| !! | TTAGGTATAATCATTTGAAT+GGG | + | chr3.3:84834261-84834280 | MS.gene32906:intron | 20.0% |
| !! | TTCATTTACTGTAAAAAATG+TGG | - | chr3.3:84835382-84835401 | None:intergenic | 20.0% |
| !!! | AGTTAAGTAATTTTTCAAAC+CGG | - | chr3.3:84835522-84835541 | None:intergenic | 20.0% |
| !!! | ATGGCTAAATTATTTTAAAG+AGG | + | chr3.3:84836293-84836312 | MS.gene32906:intron | 20.0% |
| !!! | ATTTTAAAGAGGCTTAAAAT+TGG | + | chr3.3:84836304-84836323 | MS.gene32906:intron | 20.0% |
| !!! | CTTAACACACTAATTTTAAA+AGG | - | chr3.3:84836772-84836791 | None:intergenic | 20.0% |
| !!! | GTTTTTCTTATTCAATAAAC+AGG | + | chr3.3:84836589-84836608 | MS.gene32906:intron | 20.0% |
| !!! | TAAATTGACTAAGATTTTGT+CGG | + | chr3.3:84835143-84835162 | MS.gene32906:intron | 20.0% |
| !!! | TAGATTGTTTTGTTTGTAAA+AGG | - | chr3.3:84835095-84835114 | None:intergenic | 20.0% |
| !!! | TATCACTCAATTTTCTAATT+CGG | + | chr3.3:84836138-84836157 | MS.gene32906:intron | 20.0% |
| !!! | TATGGTAATGATATGTTTTA+TGG | + | chr3.3:84834311-84834330 | MS.gene32906:intron | 20.0% |
| !!! | TCATTTTTTTCTTCTTTAGA+TGG | + | chr3.3:84836274-84836293 | MS.gene32906:intron | 20.0% |
| !!! | TTTTTACAGTAAATGAATAG+CGG | + | chr3.3:84835385-84835404 | MS.gene32906:intron | 20.0% |
| ! | ACAATGAAGATTAGTAAAGT+TGG | - | chr3.3:84835790-84835809 | None:intergenic | 25.0% |
| ! | ATAAGTATGAGGGTAAAAAT+CGG | + | chr3.3:84836702-84836721 | MS.gene32906:intron | 25.0% |
| ! | ATTAGTAAAGTTGGCTATAT+TGG | - | chr3.3:84835781-84835800 | None:intergenic | 25.0% |
| ! | CGGTATTTATCTAATAATAG+TGG | - | chr3.3:84835502-84835521 | None:intergenic | 25.0% |
| ! | CTTAATGATTATGATTACTC+TGG | + | chr3.3:84834065-84834084 | MS.gene32906:CDS | 25.0% |
| ! | CTTATGATGTAAATCAGATT+AGG | + | chr3.3:84834243-84834262 | MS.gene32906:CDS | 25.0% |
| ! | GAAAAACAAAGTTATCACAA+CGG | - | chr3.3:84836576-84836595 | None:intergenic | 25.0% |
| ! | GTATTGTCTAAGGATATTAA+TGG | + | chr3.3:84834925-84834944 | MS.gene32906:CDS | 25.0% |
| ! | TAAATGATCCTAATGTAACA+AGG | + | chr3.3:84836011-84836030 | MS.gene32906:CDS | 25.0% |
| ! | TAGGTATAATCATTTGAATG+GGG | + | chr3.3:84834262-84834281 | MS.gene32906:intron | 25.0% |
| ! | TTATGAGGTTATTACAAAGA+TGG | + | chr3.3:84834607-84834626 | MS.gene32906:CDS | 25.0% |
| ! | TTCAGTTTATGTTCTGATTA+TGG | + | chr3.3:84835541-84835560 | MS.gene32906:intron | 25.0% |
| !! | AAATTGACTAAGATTTTGTC+GGG | + | chr3.3:84835144-84835163 | MS.gene32906:intron | 25.0% |
| !! | AATTTTCTAATTCGGTATCT+TGG | + | chr3.3:84836146-84836165 | MS.gene32906:intron | 25.0% |
| !! | ATGTAACACATGGTTTTTAT+TGG | + | chr3.3:84836426-84836445 | MS.gene32906:intron | 25.0% |
| !! | GAAATTTTCAATGTGCTTTA+AGG | + | chr3.3:84834351-84834370 | MS.gene32906:intron | 25.0% |
| !! | TATGGATATTGTTATTGTTC+TGG | - | chr3.3:84833923-84833942 | None:intergenic | 25.0% |
| !! | TCTTTGTTTCTTGTTTCTTA+AGG | + | chr3.3:84834739-84834758 | MS.gene32906:intron | 25.0% |
| !! | TTTAAGCAGTTTATTTGTTG+TGG | + | chr3.3:84836372-84836391 | MS.gene32906:intron | 25.0% |
| !!! | AAGTTCTAAAGAAAGGAAAA+AGG | + | chr3.3:84835472-84835491 | MS.gene32906:intron | 25.0% |
| !!! | TTTTCCTTTCTTTAGAACTT+AGG | - | chr3.3:84835472-84835491 | None:intergenic | 25.0% |
| AAAAAACAAAAAGGGACCTT+AGG | + | chr3.3:84836832-84836851 | MS.gene32906:intron | 30.0% | |
| AAAAACAAAAAGGGACCTTA+GGG | + | chr3.3:84836833-84836852 | MS.gene32906:intron | 30.0% | |
| AAATATACCCATGAAGACTA+AGG | - | chr3.3:84834712-84834731 | None:intergenic | 30.0% | |
| AATAACTTAGCTTATGGTAG+AGG | + | chr3.3:84834185-84834204 | MS.gene32906:CDS | 30.0% | |
| AGGTATAATCATTTGAATGG+GGG | + | chr3.3:84834263-84834282 | MS.gene32906:intron | 30.0% | |
| ATTACTGCCATATTTATTGC+AGG | - | chr3.3:84835927-84835946 | None:intergenic | 30.0% | |
| CCTAATCCTAATCAATCTTT+CGG | + | chr3.3:84834023-84834042 | MS.gene32906:CDS | 30.0% | |
| CTATTAGCTGAAGATTGTTA+CGG | + | chr3.3:84835718-84835737 | MS.gene32906:CDS | 30.0% | |
| CTGATGACAAAATTTCCATA+AGG | - | chr3.3:84836049-84836068 | None:intergenic | 30.0% | |
| CTTAGTCAATTTATGAGGAA+CGG | - | chr3.3:84835136-84835155 | None:intergenic | 30.0% | |
| GTAATAACCTCATAACCAAT+AGG | - | chr3.3:84834602-84834621 | None:intergenic | 30.0% | |
| TAAATATGGCAGTAATGTAG+TGG | + | chr3.3:84835931-84835950 | MS.gene32906:CDS | 30.0% | |
| TAACAATCTTCAGCTAATAG+TGG | - | chr3.3:84835718-84835737 | None:intergenic | 30.0% | |
| TAGATTCATTAAGAATGCCT+TGG | + | chr3.3:84836616-84836635 | MS.gene32906:CDS | 30.0% | |
| TAGCAATATGTTTGGCAAAA+AGG | + | chr3.3:84836673-84836692 | MS.gene32906:CDS | 30.0% | |
| TAGCAATTCTATAATGATGC+AGG | - | chr3.3:84835993-84836012 | None:intergenic | 30.0% | |
| TATTAGCTGAAGATTGTTAC+GGG | + | chr3.3:84835719-84835738 | MS.gene32906:CDS | 30.0% | |
| TCTCTTTCCTGCAATAAATA+TGG | + | chr3.3:84835917-84835936 | MS.gene32906:CDS | 30.0% | |
| TGAAACAAACATGTAACACA+TGG | + | chr3.3:84836416-84836435 | MS.gene32906:intron | 30.0% | |
| TTAATGGAATGAATGCACAT+TGG | + | chr3.3:84834426-84834445 | MS.gene32906:CDS | 30.0% | |
| ! | AATTGACTAAGATTTTGTCG+GGG | + | chr3.3:84835145-84835164 | MS.gene32906:intron | 30.0% |
| ! | GAAAAGTTTTTGCATGATTC+AGG | + | chr3.3:84835953-84835972 | MS.gene32906:CDS | 30.0% |
| ! | GACACTTTAAGTTCAAATTG+TGG | + | chr3.3:84835067-84835086 | MS.gene32906:intron | 30.0% |
| !! | ATTGGTTTGATGAATTTCGT+GGG | + | chr3.3:84834444-84834463 | MS.gene32906:CDS | 30.0% |
| !! | TATTGTTATTGTTCTGGTTC+TGG | - | chr3.3:84833917-84833936 | None:intergenic | 30.0% |
| !! | TTAGTTTTCATAGTGTAGCA+TGG | - | chr3.3:84835306-84835325 | None:intergenic | 30.0% |
| !! | TTTGCCTAAGTTCTAAAGAA+AGG | + | chr3.3:84835465-84835484 | MS.gene32906:intron | 30.0% |
| !!! | TTTGCTTTTGGAACAGTTTA+TGG | + | chr3.3:84836928-84836947 | MS.gene32906:CDS | 30.0% |
| AAAACAACACACATACCCTA+AGG | - | chr3.3:84836851-84836870 | None:intergenic | 35.0% | |
| AAACCATGCATTTCACTCTT+TGG | - | chr3.3:84836179-84836198 | None:intergenic | 35.0% | |
| AAAGACTCAGATTGTTCTGT+TGG | + | chr3.3:84834652-84834671 | MS.gene32906:CDS | 35.0% | |
| AAGAAGTGATGGCAAATTTG+GGG | + | chr3.3:84834513-84834532 | MS.gene32906:CDS | 35.0% | |
| AATATCAGAACTTGTGAGAC+CGG | - | chr3.3:84837002-84837021 | None:intergenic | 35.0% | |
| AATTTCCATAAGGATCCGTA+AGG | - | chr3.3:84836039-84836058 | None:intergenic | 35.0% | |
| AATTTCTTGCAATAACTCCC+AGG | - | chr3.3:84835585-84835604 | None:intergenic | 35.0% | |
| ACATGTATTTCATACCTGCT+AGG | + | chr3.3:84836740-84836759 | MS.gene32906:intron | 35.0% | |
| ATGATGCGTAGCAATATGTT+TGG | + | chr3.3:84836665-84836684 | MS.gene32906:CDS | 35.0% | |
| ATTCATTAAGAATGCCTTGG+AGG | + | chr3.3:84836619-84836638 | MS.gene32906:CDS | 35.0% | |
| CAAGAAGTGATGGCAAATTT+GGG | + | chr3.3:84834512-84834531 | MS.gene32906:CDS | 35.0% | |
| CATTGCAATGAAAACAGCTA+CGG | - | chr3.3:84836972-84836991 | None:intergenic | 35.0% | |
| CCATAACCGAAAGATTGATT+AGG | - | chr3.3:84834032-84834051 | None:intergenic | 35.0% | |
| CCGAAAGATTGATTAGGATT+AGG | - | chr3.3:84834026-84834045 | None:intergenic | 35.0% | |
| CCTAATCAATCTTTCGGTTA+TGG | + | chr3.3:84834029-84834048 | MS.gene32906:CDS | 35.0% | |
| CTAACAGGTGTATTGAAATC+AGG | - | chr3.3:84834158-84834177 | None:intergenic | 35.0% | |
| CTGATTTCAATACACCTGTT+AGG | + | chr3.3:84834156-84834175 | MS.gene32906:CDS | 35.0% | |
| GATTATGATTACTCTGGTGT+TGG | + | chr3.3:84834071-84834090 | MS.gene32906:CDS | 35.0% | |
| TAATGTAACAAGGCTCCTTA+CGG | + | chr3.3:84836021-84836040 | MS.gene32906:CDS | 35.0% | |
| TAGACAATACAATAGCTCCA+GGG | - | chr3.3:84834915-84834934 | None:intergenic | 35.0% | |
| TCAACAGAATAATTGCCAAC+AGG | - | chr3.3:84836399-84836418 | None:intergenic | 35.0% | |
| TCACTTTCAAGAGATAAGAC+CGG | + | chr3.3:84835610-84835629 | MS.gene32906:CDS | 35.0% | |
| TGAGGTTATTACAAAGATGG+TGG | + | chr3.3:84834610-84834629 | MS.gene32906:CDS | 35.0% | |
| TGGAGCTATTGTATTGTCTA+AGG | + | chr3.3:84834915-84834934 | MS.gene32906:CDS | 35.0% | |
| TTAGACAATACAATAGCTCC+AGG | - | chr3.3:84834916-84834935 | None:intergenic | 35.0% | |
| ! | AAAAAGTATGAAACCCCTTC+AGG | - | chr3.3:84834539-84834558 | None:intergenic | 35.0% |
| ! | AAGGTGCTTGATAAGTATGA+GGG | + | chr3.3:84836692-84836711 | MS.gene32906:CDS | 35.0% |
| ! | AATCATTTGAATGGGGGTAT+TGG | + | chr3.3:84834269-84834288 | MS.gene32906:intron | 35.0% |
| ! | ACGAGAAAAAGCTTGTTCTA+GGG | - | chr3.3:84833988-84834007 | None:intergenic | 35.0% |
| ! | ACTTTTGTCACAGAAATTCC+TGG | + | chr3.3:84835564-84835583 | MS.gene32906:intron | 35.0% |
| ! | AGAATTTGCCTTAGTCTTCA+TGG | + | chr3.3:84834701-84834720 | MS.gene32906:CDS | 35.0% |
| ! | ATGGTTTAGCTGACTTAGTT+GGG | + | chr3.3:84836192-84836211 | MS.gene32906:intron | 35.0% |
| ! | CAAGATTTTGCAAGAAGTGA+TGG | + | chr3.3:84834502-84834521 | MS.gene32906:CDS | 35.0% |
| ! | CAATCTGAGTCTTTTGATCT+TGG | - | chr3.3:84834646-84834665 | None:intergenic | 35.0% |
| ! | CTTTTGTCACAGAAATTCCT+GGG | + | chr3.3:84835565-84835584 | MS.gene32906:intron | 35.0% |
| ! | GAACAGTTTATGGACTATAG+AGG | + | chr3.3:84836938-84836957 | MS.gene32906:CDS | 35.0% |
| ! | GAATTTGCCTTAGTCTTCAT+GGG | + | chr3.3:84834702-84834721 | MS.gene32906:CDS | 35.0% |
| ! | TAATCACATGTGTGAGTTGA+TGG | + | chr3.3:84834571-84834590 | MS.gene32906:CDS | 35.0% |
| ! | TTTCGATTTGAGCCATGAAA+GGG | - | chr3.3:84833953-84833972 | None:intergenic | 35.0% |
| !! | AAAGGTGCTTGATAAGTATG+AGG | + | chr3.3:84836691-84836710 | MS.gene32906:CDS | 35.0% |
| !! | CATTGGTTTGATGAATTTCG+TGG | + | chr3.3:84834443-84834462 | MS.gene32906:CDS | 35.0% |
| !! | CTTGTTCTAGGGTTTGATTA+GGG | - | chr3.3:84833977-84833996 | None:intergenic | 35.0% |
| !! | GTATTGAAATCAGGTTGACT+AGG | - | chr3.3:84834149-84834168 | None:intergenic | 35.0% |
| !! | GTTTTCTTGTTGTGTGTTAC+TGG | + | chr3.3:84836885-84836904 | MS.gene32906:CDS | 35.0% |
| !! | TGTAGTTTGTCACTTTCTCT+TGG | + | chr3.3:84836453-84836472 | MS.gene32906:intron | 35.0% |
| !! | TTTATTTGTTGTGGTCCTGT+TGG | + | chr3.3:84836381-84836400 | MS.gene32906:intron | 35.0% |
| !! | TTTTCGATTTGAGCCATGAA+AGG | - | chr3.3:84833954-84833973 | None:intergenic | 35.0% |
| !!! | AGGGGTTTCATACTTTTTCT+TGG | + | chr3.3:84834541-84834560 | MS.gene32906:CDS | 35.0% |
| !!! | ATTGTTCTGGTTCTGGTTTT+GGG | - | chr3.3:84833910-84833929 | None:intergenic | 35.0% |
| !!! | TATTGTTCTGGTTCTGGTTT+TGG | - | chr3.3:84833911-84833930 | None:intergenic | 35.0% |
| !!! | TGTTACGGGTTTGTTTTTAC+AGG | + | chr3.3:84835733-84835752 | MS.gene32906:intron | 35.0% |
| AATTAGACCTCTTTGCTCTC+TGG | - | chr3.3:84834878-84834897 | None:intergenic | 40.0% | |
| ACAGCATCATTAACCCAAGT+TGG | - | chr3.3:84834392-84834411 | None:intergenic | 40.0% | |
| ACATCATAAGAACTCAACCG+CGG | - | chr3.3:84834233-84834252 | None:intergenic | 40.0% | |
| AGACAATACAATAGCTCCAG+GGG | - | chr3.3:84834914-84834933 | None:intergenic | 40.0% | |
| ATACAAATTGCTGCTGAAGC+TGG | - | chr3.3:84835898-84835917 | None:intergenic | 40.0% | |
| ATCGACAGAATCGTTAGGAA+TGG | - | chr3.3:84833829-84833848 | None:intergenic | 40.0% | |
| CCATAACCAAAACCCTTTCA+TGG | + | chr3.3:84833938-84833957 | MS.gene32906:CDS | 40.0% | |
| CCTAACGATTCTGTCGATAA+CGG | + | chr3.3:84833831-84833850 | MS.gene32906:CDS | 40.0% | |
| CGGGTTAAGGTCTTAAATTG+AGG | + | chr3.3:84835170-84835189 | MS.gene32906:intron | 40.0% | |
| CTGAAAATACCAACAGTCTC+AGG | + | chr3.3:84835860-84835879 | MS.gene32906:CDS | 40.0% | |
| CTGCAATCCTGCTTAATATC+CGG | - | chr3.3:84835210-84835229 | None:intergenic | 40.0% | |
| GCAAGAAGTGATGGCAAATT+TGG | + | chr3.3:84834511-84834530 | MS.gene32906:CDS | 40.0% | |
| GCATACTTCATTGTGCTAGA+AGG | + | chr3.3:84836537-84836556 | MS.gene32906:intron | 40.0% | |
| GGATATTAATGGTCATCGTG+TGG | + | chr3.3:84834936-84834955 | MS.gene32906:CDS | 40.0% | |
| GTTTGATGAATTTCGTGGGA+GGG | + | chr3.3:84834448-84834467 | MS.gene32906:CDS | 40.0% | |
| TATTGTGTTAGCCATGCTCA+AGG | + | chr3.3:84835649-84835668 | MS.gene32906:CDS | 40.0% | |
| TCGTTCTGTTGAGAAACTGT+TGG | + | chr3.3:84834840-84834859 | MS.gene32906:CDS | 40.0% | |
| TGCAATCCTGCTTAATATCC+GGG | - | chr3.3:84835209-84835228 | None:intergenic | 40.0% | |
| TTAAAAGGGTTACTCCTAGC+AGG | - | chr3.3:84836757-84836776 | None:intergenic | 40.0% | |
| TTACCTCAGTATCAGCATGT+GGG | - | chr3.3:84834984-84835003 | None:intergenic | 40.0% | |
| TTAGCTTATGGTAGAGGTAG+AGG | + | chr3.3:84834191-84834210 | MS.gene32906:CDS | 40.0% | |
| TTCTGATAAACTGAGCACCA+TGG | - | chr3.3:84834685-84834704 | None:intergenic | 40.0% | |
| TTGCCAAAGAGTGAAATGCA+TGG | + | chr3.3:84836173-84836192 | MS.gene32906:intron | 40.0% | |
| TTTACCTCAGTATCAGCATG+TGG | - | chr3.3:84834985-84835004 | None:intergenic | 40.0% | |
| ! | ACTAAGATTTTGTCGGGGTT+CGG | + | chr3.3:84835150-84835169 | MS.gene32906:intron | 40.0% |
| ! | CATGGTTTAGCTGACTTAGT+TGG | + | chr3.3:84836191-84836210 | MS.gene32906:intron | 40.0% |
| ! | GACGAGAAAAAGCTTGTTCT+AGG | - | chr3.3:84833989-84834008 | None:intergenic | 40.0% |
| ! | GGATGGAAGGATTTTGCTTT+TGG | + | chr3.3:84836916-84836935 | MS.gene32906:CDS | 40.0% |
| ! | GGTTGATCCTATTGGTTATG+AGG | + | chr3.3:84834592-84834611 | MS.gene32906:CDS | 40.0% |
| ! | GTTTTTGCATGATTCAGGAG+TGG | + | chr3.3:84835958-84835977 | MS.gene32906:CDS | 40.0% |
| ! | TGCTAGAAGGCTTGGTTTAT+TGG | + | chr3.3:84836550-84836569 | MS.gene32906:intron | 40.0% |
| ! | TTTGAGCCATGAAAGGGTTT+TGG | - | chr3.3:84833947-84833966 | None:intergenic | 40.0% |
| !! | CGTAGCTGTTTTCATTGCAA+TGG | + | chr3.3:84836970-84836989 | MS.gene32906:CDS | 40.0% |
| !! | GAGTTGATGGTTGATCCTAT+TGG | + | chr3.3:84834584-84834603 | MS.gene32906:CDS | 40.0% |
| !! | GCTTGTTCTAGGGTTTGATT+AGG | - | chr3.3:84833978-84833997 | None:intergenic | 40.0% |
| !! | GTAAGGAGCCTTGTTACATT+AGG | - | chr3.3:84836022-84836041 | None:intergenic | 40.0% |
| !!! | ATGTTTTTCTGAGACCCTCT+AGG | + | chr3.3:84835273-84835292 | MS.gene32906:intron | 40.0% |
| !!! | CCATGAAAGGGTTTTGGTTA+TGG | - | chr3.3:84833941-84833960 | None:intergenic | 40.0% |
| AGCATGGCATGATTCCTAGA+GGG | - | chr3.3:84835290-84835309 | None:intergenic | 45.0% | |
| ATACTGCAGCACACAACATC+CGG | - | chr3.3:84835632-84835651 | None:intergenic | 45.0% | |
| ATGAATCCTCTGTGCCAACT+TGG | + | chr3.3:84834375-84834394 | MS.gene32906:CDS | 45.0% | |
| CACAATCCCGGATATTAAGC+AGG | + | chr3.3:84835200-84835219 | MS.gene32906:intron | 45.0% | |
| CACTGTGATCGAGGTGATAA+CGG | - | chr3.3:84833864-84833883 | None:intergenic | 45.0% | |
| CAGGATTTGAATGCAACTGC+TGG | + | chr3.3:84835227-84835246 | MS.gene32906:intron | 45.0% | |
| CCGTTATCGACAGAATCGTT+AGG | - | chr3.3:84833834-84833853 | None:intergenic | 45.0% | |
| CGGATATTAAGCAGGATTGC+AGG | + | chr3.3:84835208-84835227 | MS.gene32906:intron | 45.0% | |
| CTTCATTGTGCTAGAAGGCT+TGG | + | chr3.3:84836542-84836561 | MS.gene32906:intron | 45.0% | |
| GATGCATGATACTTACGTGC+AGG | - | chr3.3:84836343-84836362 | None:intergenic | 45.0% | |
| GGTTTGATGAATTTCGTGGG+AGG | + | chr3.3:84834447-84834466 | MS.gene32906:CDS | 45.0% | |
| TAACTCAACCACTGTGATCG+AGG | - | chr3.3:84833873-84833892 | None:intergenic | 45.0% | |
| TAAGAATGCCTTGGAGGAAC+TGG | + | chr3.3:84836625-84836644 | MS.gene32906:CDS | 45.0% | |
| TAGCATGGCATGATTCCTAG+AGG | - | chr3.3:84835291-84835310 | None:intergenic | 45.0% | |
| TCTTAGTTGCTCCTTGAGCA+TGG | - | chr3.3:84835663-84835682 | None:intergenic | 45.0% | |
| TGAATCCTCTGTGCCAACTT+GGG | + | chr3.3:84834376-84834395 | MS.gene32906:CDS | 45.0% | |
| TGTTACTGGCATGGAATGGA+TGG | + | chr3.3:84836899-84836918 | MS.gene32906:CDS | 45.0% | |
| TTCATTGCAATGGAAGCTGC+CGG | + | chr3.3:84836980-84836999 | MS.gene32906:CDS | 45.0% | |
| TTTCCCACATGCTGATACTG+AGG | + | chr3.3:84834978-84834997 | MS.gene32906:CDS | 45.0% | |
| ! | ATTAACCCAAGTTGGCACAG+AGG | - | chr3.3:84834384-84834403 | None:intergenic | 45.0% |
| ! | ATTATGTCAGCTTTGTCCCC+TGG | + | chr3.3:84834895-84834914 | MS.gene32906:CDS | 45.0% |
| ! | CTAAGATTTTGTCGGGGTTC+GGG | + | chr3.3:84835151-84835170 | MS.gene32906:intron | 45.0% |
| ! | CTTGTTGTGTGTTACTGGCA+TGG | + | chr3.3:84836890-84836909 | MS.gene32906:CDS | 45.0% |
| ! | TGTGTGTTACTGGCATGGAA+TGG | + | chr3.3:84836895-84836914 | MS.gene32906:CDS | 45.0% |
| !! | CATTTGAATGGGGGTATTGG+TGG | + | chr3.3:84834272-84834291 | MS.gene32906:intron | 45.0% |
| ACTGGCATGGAATGGATGGA+AGG | + | chr3.3:84836903-84836922 | MS.gene32906:CDS | 50.0% | |
| AGGCTCCTTACGGATCCTTA+TGG | + | chr3.3:84836031-84836050 | MS.gene32906:CDS | 50.0% | |
| CAAATTGCTGCTGAAGCTGG+TGG | - | chr3.3:84835895-84835914 | None:intergenic | 50.0% | |
| CGTTATCACCTCGATCACAG+TGG | + | chr3.3:84833862-84833881 | MS.gene32906:CDS | 50.0% | |
| CGTTGGCGAAGGATACACAT+GGG | + | chr3.3:84834477-84834496 | MS.gene32906:CDS | 50.0% | |
| GAGGGTTTATTCGTTGGCGA+AGG | + | chr3.3:84834466-84834485 | MS.gene32906:CDS | 50.0% | |
| GCGGTATGCTTGCTCTTGTT+TGG | + | chr3.3:84835404-84835423 | MS.gene32906:intron | 50.0% | |
| GTTACCACCAGAGAGCAAAG+AGG | + | chr3.3:84834868-84834887 | MS.gene32906:CDS | 50.0% | |
| GTTCTGTTGGTCACACACCA+TGG | + | chr3.3:84834665-84834684 | MS.gene32906:CDS | 50.0% | |
| TAGACCTCTTTGCTCTCTGG+TGG | - | chr3.3:84834875-84834894 | None:intergenic | 50.0% | |
| TCGTGGGAGGGTTTATTCGT+TGG | + | chr3.3:84834460-84834479 | MS.gene32906:CDS | 50.0% | |
| TCGTTGGCGAAGGATACACA+TGG | + | chr3.3:84834476-84834495 | MS.gene32906:CDS | 50.0% | |
| TGTAGGTTGCCTGAGACTGT+TGG | - | chr3.3:84835872-84835891 | None:intergenic | 50.0% | |
| ! | ATGGCAAATTTGGGGCCTGA+AGG | + | chr3.3:84834521-84834540 | MS.gene32906:CDS | 50.0% |
| ! | TGAGGCTGCTTTCACAATCC+CGG | + | chr3.3:84835188-84835207 | MS.gene32906:intron | 50.0% |
| ! | TGGCAAATTTGGGGCCTGAA+GGG | + | chr3.3:84834522-84834541 | MS.gene32906:CDS | 50.0% |
| !! | ATTGGTGGTGGTGGTGGTTA+TGG | + | chr3.3:84834287-84834306 | MS.gene32906:intron | 50.0% |
| !! | GGTGGTGGTGGTTATGGTTA+TGG | + | chr3.3:84834293-84834312 | MS.gene32906:intron | 50.0% |
| !! | TTGAATGGGGGTATTGGTGG+TGG | + | chr3.3:84834275-84834294 | MS.gene32906:intron | 50.0% |
| !! | TTTTGTCGGGGTTCGGGTTA+AGG | + | chr3.3:84835157-84835176 | MS.gene32906:intron | 50.0% |
| GCTGGCACTGTGCAGATTGT+GGG | + | chr3.3:84835245-84835264 | MS.gene32906:intron | 55.0% | |
| TAAGAACTCAACCGCGGCGA+CGG | - | chr3.3:84834227-84834246 | None:intergenic | 55.0% | |
| TGCTGGCACTGTGCAGATTG+TGG | + | chr3.3:84835244-84835263 | MS.gene32906:intron | 55.0% | |
| TGCTTCGACCAGTTCCTCCA+AGG | - | chr3.3:84836636-84836655 | None:intergenic | 55.0% | |
| ! | GGCAAATTTGGGGCCTGAAG+GGG | + | chr3.3:84834523-84834542 | MS.gene32906:CDS | 55.0% |
| !! | AATGGGGGTATTGGTGGTGG+TGG | + | chr3.3:84834278-84834297 | MS.gene32906:intron | 55.0% |
| ! | GCTGCTGAAGCTGGTGGTGT+AGG | - | chr3.3:84835889-84835908 | None:intergenic | 60.0% |
| !! | GGGGGTATTGGTGGTGGTGG+TGG | + | chr3.3:84834281-84834300 | MS.gene32906:intron | 65.0% |
| GAACTCAACCGCGGCGACGG+CGG | - | chr3.3:84834224-84834243 | None:intergenic | 70.0% | |
| GAATTTCGCCGCCGTCGCCG+CGG | + | chr3.3:84834213-84834232 | MS.gene32906:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84833810 | 84837033 | 84833810 | ID=MS.gene32906 |
| chr3.3 | mRNA | 84833810 | 84837033 | 84833810 | ID=MS.gene32906.t1;Parent=MS.gene32906 |
| chr3.3 | exon | 84833810 | 84834264 | 84833810 | ID=MS.gene32906.t1.exon1;Parent=MS.gene32906.t1 |
| chr3.3 | CDS | 84833810 | 84834264 | 84833810 | ID=cds.MS.gene32906.t1;Parent=MS.gene32906.t1 |
| chr3.3 | exon | 84834373 | 84834723 | 84834373 | ID=MS.gene32906.t1.exon2;Parent=MS.gene32906.t1 |
| chr3.3 | CDS | 84834373 | 84834723 | 84834373 | ID=cds.MS.gene32906.t1;Parent=MS.gene32906.t1 |
| chr3.3 | exon | 84834837 | 84834999 | 84834837 | ID=MS.gene32906.t1.exon3;Parent=MS.gene32906.t1 |
| chr3.3 | CDS | 84834837 | 84834999 | 84834837 | ID=cds.MS.gene32906.t1;Parent=MS.gene32906.t1 |
| chr3.3 | exon | 84835577 | 84835740 | 84835577 | ID=MS.gene32906.t1.exon4;Parent=MS.gene32906.t1 |
| chr3.3 | CDS | 84835577 | 84835740 | 84835577 | ID=cds.MS.gene32906.t1;Parent=MS.gene32906.t1 |
| chr3.3 | exon | 84835832 | 84836090 | 84835832 | ID=MS.gene32906.t1.exon5;Parent=MS.gene32906.t1 |
| chr3.3 | CDS | 84835832 | 84836090 | 84835832 | ID=cds.MS.gene32906.t1;Parent=MS.gene32906.t1 |
| chr3.3 | exon | 84836611 | 84836713 | 84836611 | ID=MS.gene32906.t1.exon6;Parent=MS.gene32906.t1 |
| chr3.3 | CDS | 84836611 | 84836713 | 84836611 | ID=cds.MS.gene32906.t1;Parent=MS.gene32906.t1 |
| chr3.3 | exon | 84836876 | 84837033 | 84836876 | ID=MS.gene32906.t1.exon7;Parent=MS.gene32906.t1 |
| chr3.3 | CDS | 84836876 | 84837033 | 84836876 | ID=cds.MS.gene32906.t1;Parent=MS.gene32906.t1 |
| Gene Sequence |
| Protein sequence |
