Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32982.t1 | XP_003589022.1 | 97.5 | 318 | 8 | 0 | 1 | 318 | 33 | 350 | 2.20E-175 | 624.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32982.t1 | Q944K3 | 80.1 | 311 | 62 | 0 | 1 | 311 | 74 | 384 | 4.3e-143 | 508.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32982.t1 | G7IB89 | 97.5 | 318 | 8 | 0 | 1 | 318 | 33 | 350 | 1.6e-175 | 624.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32982 | MS.gene00617 | PPI |
| MS.gene32982 | MS.gene072058 | PPI |
| MS.gene32982 | MS.gene047200 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32982.t1 | MTR_1g016440 | 97.484 | 318 | 8 | 0 | 1 | 318 | 33 | 350 | 0.0 | 635 |
| MS.gene32982.t1 | MTR_1g016440 | 94.191 | 241 | 11 | 1 | 1 | 241 | 33 | 270 | 2.13e-165 | 461 |
| MS.gene32982.t1 | MTR_4g109500 | 26.625 | 323 | 195 | 12 | 20 | 312 | 38 | 348 | 6.57e-20 | 90.5 |
| MS.gene32982.t1 | MTR_4g109500 | 26.625 | 323 | 195 | 12 | 20 | 312 | 38 | 348 | 7.32e-20 | 90.5 |
| MS.gene32982.t1 | MTR_5g004640 | 25.641 | 273 | 184 | 6 | 20 | 279 | 40 | 306 | 1.20e-16 | 80.9 |
| MS.gene32982.t1 | MTR_4g055080 | 26.263 | 297 | 181 | 9 | 20 | 293 | 24 | 305 | 1.45e-15 | 77.4 |
| MS.gene32982.t1 | MTR_3g077160 | 25.342 | 292 | 183 | 9 | 20 | 288 | 45 | 324 | 2.44e-15 | 76.6 |
| MS.gene32982.t1 | MTR_3g118535 | 26.897 | 290 | 192 | 8 | 20 | 295 | 37 | 320 | 3.42e-15 | 76.3 |
| MS.gene32982.t1 | MTR_4g055080 | 26.871 | 294 | 174 | 10 | 26 | 293 | 2 | 280 | 4.71e-15 | 75.5 |
| MS.gene32982.t1 | MTR_8g093800 | 25.552 | 317 | 199 | 12 | 17 | 303 | 74 | 383 | 2.06e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32982.t1 | AT5G26040 | 80.064 | 311 | 62 | 0 | 1 | 311 | 74 | 384 | 0.0 | 522 |
| MS.gene32982.t1 | AT5G26040 | 72.347 | 311 | 58 | 1 | 1 | 311 | 74 | 356 | 7.89e-162 | 455 |
| MS.gene32982.t1 | AT4G38130 | 26.740 | 273 | 181 | 6 | 20 | 279 | 36 | 302 | 5.33e-18 | 84.7 |
| MS.gene32982.t1 | AT4G38130 | 26.740 | 273 | 181 | 6 | 20 | 279 | 36 | 302 | 8.41e-18 | 84.3 |
| MS.gene32982.t1 | AT5G63110 | 33.333 | 204 | 119 | 8 | 96 | 288 | 118 | 315 | 2.49e-17 | 82.8 |
| MS.gene32982.t1 | AT5G61060 | 26.897 | 290 | 187 | 9 | 20 | 288 | 46 | 331 | 7.42e-16 | 78.6 |
| MS.gene32982.t1 | AT1G08460 | 23.301 | 309 | 210 | 7 | 4 | 293 | 23 | 323 | 3.25e-15 | 75.9 |
| MS.gene32982.t1 | AT5G61060 | 26.871 | 294 | 186 | 10 | 20 | 288 | 46 | 335 | 2.76e-14 | 73.9 |
| MS.gene32982.t1 | AT5G61070 | 26.132 | 287 | 173 | 12 | 30 | 288 | 89 | 364 | 3.73e-13 | 70.5 |
| MS.gene32982.t1 | AT1G08460 | 22.780 | 259 | 176 | 5 | 4 | 245 | 23 | 274 | 1.05e-11 | 65.1 |
| MS.gene32982.t1 | AT4G33470 | 25.269 | 186 | 130 | 3 | 127 | 303 | 201 | 386 | 3.98e-11 | 63.9 |
Find 76 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCGTTTGATTCGTCTAAA+TGG | 0.181388 | 1.1:-5753247 | MS.gene32982:CDS |
| CATCACTGTTCTGCAGAAAA+TGG | 0.209362 | 1.1:-5751546 | MS.gene32982:CDS |
| TGTAAGTTTCTTAATTCTTT+TGG | 0.262598 | 1.1:-5753215 | MS.gene32982:CDS |
| AAAACCTCCTCCCACATTAA+TGG | 0.273424 | 1.1:+5751569 | None:intergenic |
| CCTATTGTCATGCTCACTTC+AGG | 0.309644 | 1.1:-5749217 | MS.gene32982:intron |
| GATCACTGTTATGCAGTCTT+TGG | 0.318259 | 1.1:+5748478 | None:intergenic |
| CTGATGTGTTTCAAGGTTGC+TGG | 0.321961 | 1.1:-5749576 | MS.gene32982:intron |
| TTCCTAATGGATCACCTTCT+AGG | 0.332310 | 1.1:+5749505 | None:intergenic |
| ATTACCTTCAACCTTCCTAA+TGG | 0.340809 | 1.1:+5749492 | None:intergenic |
| TCCGTTTGATTCGTCTAAAT+GGG | 0.360447 | 1.1:-5753246 | MS.gene32982:CDS |
| TTTACCAAAGGATATATTCC+AGG | 0.381434 | 1.1:+5751187 | None:intergenic |
| TCTTATGACATATCATTTCT+CGG | 0.392913 | 1.1:-5753370 | MS.gene32982:CDS |
| TCAAGGAAATGGTCATGAAA+TGG | 0.415584 | 1.1:-5751338 | MS.gene32982:CDS |
| GCAGGTTGGAGGAACTATAT+TGG | 0.416403 | 1.1:-5751622 | MS.gene32982:intron |
| CGAAAGTACCTCAATTATCT+TGG | 0.426478 | 1.1:+5752095 | None:intergenic |
| GATTTACCTGTTTCCTGAAT+GGG | 0.426483 | 1.1:+5751707 | None:intergenic |
| GGATTTACCTGTTTCCTGAA+TGG | 0.439631 | 1.1:+5751706 | None:intergenic |
| CTTGATGCACATCAAGGAAA+TGG | 0.443894 | 1.1:-5751349 | MS.gene32982:CDS |
| CCTGAAGTGAGCATGACAAT+AGG | 0.446956 | 1.1:+5749217 | None:intergenic |
| CTCAATTATCTTGGCAACAT+TGG | 0.449351 | 1.1:+5752104 | None:intergenic |
| TGTTCTATATTAGGATTATG+AGG | 0.464505 | 1.1:-5750151 | MS.gene32982:intron |
| TAACCCTGGAATATATCCTT+TGG | 0.472285 | 1.1:-5751191 | MS.gene32982:intron |
| GGCAGACCGAGTCTACATTC+TGG | 0.475079 | 1.1:-5751221 | MS.gene32982:intron |
| GAGTTGTTAGTTTATAATGC+TGG | 0.477061 | 1.1:-5749537 | MS.gene32982:CDS |
| TTTACGTTGCACAAGACCAT+TGG | 0.481724 | 1.1:+5751738 | None:intergenic |
| TTGTTCAGTTGAATATATCA+AGG | 0.488156 | 1.1:-5751473 | MS.gene32982:intron |
| TTACGTTGCACAAGACCATT+GGG | 0.493432 | 1.1:+5751739 | None:intergenic |
| AAATGATATGTCATAAGAAT+CGG | 0.499520 | 1.1:+5753375 | None:intergenic |
| AAATCAGAAAGTTGAAGTAA+AGG | 0.500918 | 1.1:-5750115 | MS.gene32982:intron |
| ATTGATCTTGATGCACATCA+AGG | 0.501233 | 1.1:-5751355 | MS.gene32982:CDS |
| ATCCTAGAAGGTGATCCATT+AGG | 0.507010 | 1.1:-5749507 | MS.gene32982:CDS |
| GTTTCAAGGTTGCTGGGCGA+AGG | 0.512547 | 1.1:-5749569 | MS.gene32982:intron |
| CCTGTGGCATTGTTTCCCAA+TGG | 0.518965 | 1.1:-5751754 | MS.gene32982:CDS |
| CTGAAATTAGACGAAGCACT+CGG | 0.520968 | 1.1:-5749971 | MS.gene32982:CDS |
| AACTTGCGAAGGAGAGAGGA+TGG | 0.521425 | 1.1:-5751593 | MS.gene32982:CDS |
| TGAAATTAGACGAAGCACTC+GGG | 0.522787 | 1.1:-5749970 | MS.gene32982:CDS |
| CAATGTTGCCAAGATAATTG+AGG | 0.525266 | 1.1:-5752103 | MS.gene32982:intron |
| GATACATGAAGTCCAGTGCT+AGG | 0.527724 | 1.1:-5748561 | MS.gene32982:CDS |
| GCTGGAACTGACATCCTAGA+AGG | 0.531175 | 1.1:-5749519 | MS.gene32982:CDS |
| TGATCCATTAGGAAGGTTGA+AGG | 0.537244 | 1.1:-5749496 | MS.gene32982:intron |
| TCTATTGGCCATACTATCAT+CGG | 0.540934 | 1.1:+5751309 | None:intergenic |
| TTATACTAATGGCAGGTTGG+AGG | 0.547276 | 1.1:-5751633 | MS.gene32982:intron |
| GAGAGGATGGGCCATTAATG+TGG | 0.551476 | 1.1:-5751580 | MS.gene32982:CDS |
| TCTCTAAGAGCAATTCCATC+GGG | 0.554567 | 1.1:+5749277 | None:intergenic |
| ATCTCTAAGAGCAATTCCAT+CGG | 0.557639 | 1.1:+5749276 | None:intergenic |
| GCGAAACTTGCGAAGGAGAG+AGG | 0.559522 | 1.1:-5751597 | MS.gene32982:CDS |
| GCATTATAAACTAACAACTC+AGG | 0.561437 | 1.1:+5749540 | None:intergenic |
| ATCATACTTGAATAGTCTGA+AGG | 0.568219 | 1.1:-5752133 | MS.gene32982:CDS |
| ATCTGCGATGACCCTAGCAC+TGG | 0.569570 | 1.1:+5748549 | None:intergenic |
| TTACCAAAGGATATATTCCA+GGG | 0.571772 | 1.1:+5751188 | None:intergenic |
| TGATGTGTTTCAAGGTTGCT+GGG | 0.586550 | 1.1:-5749575 | MS.gene32982:intron |
| TGGGCCATTAATGTGGGAGG+AGG | 0.588432 | 1.1:-5751573 | MS.gene32982:CDS |
| AGAGGATGGGCCATTAATGT+GGG | 0.590581 | 1.1:-5751579 | MS.gene32982:CDS |
| TGCATGCAGATTAGTCCCGA+TGG | 0.591142 | 1.1:-5749292 | MS.gene32982:intron |
| CCCCATTTAGACGAATCAAA+CGG | 0.595653 | 1.1:+5753245 | None:intergenic |
| TCAACTGAACAAAAGCAAAG+TGG | 0.602281 | 1.1:+5751484 | None:intergenic |
| TGTTCTGCAGAAAATGGTGG+TGG | 0.609323 | 1.1:-5751540 | MS.gene32982:CDS |
| TCATCTTTAGAAGCTTCAAG+AGG | 0.609813 | 1.1:+5753164 | None:intergenic |
| TTGGGAAACAATGCCACAGG+AGG | 0.609991 | 1.1:+5751757 | None:intergenic |
| AAATGCTTGATAGAAACAAG+TGG | 0.610551 | 1.1:-5748505 | MS.gene32982:CDS |
| CCATTGGGAAACAATGCCAC+AGG | 0.616536 | 1.1:+5751754 | None:intergenic |
| CATTATAAACTAACAACTCA+GGG | 0.617843 | 1.1:+5749541 | None:intergenic |
| ATACATGAAGTCCAGTGCTA+GGG | 0.620185 | 1.1:-5748560 | MS.gene32982:CDS |
| TTCTAAAGATGATCTTCTAG+TGG | 0.620264 | 1.1:-5753153 | MS.gene32982:intron |
| CCGTTTGATTCGTCTAAATG+GGG | 0.627608 | 1.1:-5753245 | MS.gene32982:CDS |
| TAGAAGGTGATCCATTAGGA+AGG | 0.638906 | 1.1:-5749503 | MS.gene32982:CDS |
| ACTTGCGAAGGAGAGAGGAT+GGG | 0.644649 | 1.1:-5751592 | MS.gene32982:CDS |
| ATTCTGGATATGTATAACCC+TGG | 0.648113 | 1.1:-5751205 | MS.gene32982:CDS |
| TAAGAATCGGAGTAGATAAG+CGG | 0.660736 | 1.1:+5753388 | None:intergenic |
| ACATATCCAGAATGTAGACT+CGG | 0.660904 | 1.1:+5751215 | None:intergenic |
| GAAATTAGACGAAGCACTCG+GGG | 0.663910 | 1.1:-5749969 | MS.gene32982:intron |
| GGATGGGCCATTAATGTGGG+AGG | 0.673443 | 1.1:-5751576 | MS.gene32982:CDS |
| TGGGAAACAATGCCACAGGA+GGG | 0.674322 | 1.1:+5751758 | None:intergenic |
| CACTGTTCTGCAGAAAATGG+TGG | 0.684154 | 1.1:-5751543 | MS.gene32982:CDS |
| ATTGGCTGCGAAACTTGCGA+AGG | 0.694927 | 1.1:-5751604 | MS.gene32982:CDS |
| ATAAATATAGGTCCCTCCTG+TGG | 0.699886 | 1.1:-5751770 | MS.gene32982:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGGTTTTTATTTAAAAAA+AGG | + | chr1.1:5751380-5751399 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTATTTTTGTTTT+AGG | - | chr1.1:5748606-5748625 | MS.gene32982:intron | 10.0% |
| !! | AAATATTATCTTCACTTAAA+AGG | - | chr1.1:5751042-5751061 | MS.gene32982:intron | 15.0% |
| !! | ACTTAATATAGTTGAATAAT+TGG | + | chr1.1:5752048-5752067 | None:intergenic | 15.0% |
| !! | ATATTGGAAAAATGTTTATA+AGG | + | chr1.1:5749555-5749574 | None:intergenic | 15.0% |
| !! | ATGAATAAAAAAACTAAGTA+AGG | + | chr1.1:5752280-5752299 | None:intergenic | 15.0% |
| !! | TATTGGAAAAATGTTTATAA+GGG | + | chr1.1:5749554-5749573 | None:intergenic | 15.0% |
| !! | TCATATAAAACAATTTAACA+TGG | + | chr1.1:5749588-5749607 | None:intergenic | 15.0% |
| !! | TGACATAAAGTAATAAATAT+AGG | - | chr1.1:5750065-5750084 | MS.gene32982:intron | 15.0% |
| !! | TTAAGATAATAAATTGAAGA+TGG | + | chr1.1:5751680-5751699 | None:intergenic | 15.0% |
| !! | TTATATTAAAAGTAACAATC+AGG | - | chr1.1:5752253-5752272 | MS.gene32982:intron | 15.0% |
| !! | TTTATATATCTCTGTTTATT+GGG | - | chr1.1:5751288-5751307 | MS.gene32982:intron | 15.0% |
| !!! | AAAATAAAAAGTATTTATCC+TGG | - | chr1.1:5752774-5752793 | MS.gene32982:intron | 15.0% |
| !!! | AAACTTTTATTAAATCGATT+TGG | - | chr1.1:5752443-5752462 | MS.gene32982:intron | 15.0% |
| !!! | AAATTATTTGCTTTTAGTTT+AGG | - | chr1.1:5751632-5751651 | MS.gene32982:intron | 15.0% |
| !!! | AATTTTTCATTTCTTGTTTA+AGG | - | chr1.1:5753291-5753310 | MS.gene32982:intron | 15.0% |
| !!! | ACTTTTAAGTAAAAAACAAA+TGG | + | chr1.1:5753071-5753090 | None:intergenic | 15.0% |
| !!! | TACTTTTTATTTTATTTTCC+AGG | + | chr1.1:5752767-5752786 | None:intergenic | 15.0% |
| !!! | TATTTTTTTAATTCTACTTG+TGG | - | chr1.1:5750949-5750968 | MS.gene32982:intron | 15.0% |
| !!! | TTCATAATAATTTTTCTCTA+AGG | - | chr1.1:5752931-5752950 | MS.gene32982:intron | 15.0% |
| !!! | TTTATTGATAATGTTATCTT+AGG | - | chr1.1:5753099-5753118 | MS.gene32982:intron | 15.0% |
| !!! | TTTTACAAGTTAAATTCTTA+AGG | + | chr1.1:5749486-5749505 | None:intergenic | 15.0% |
| !!! | TTTTTCAATTAAGATTACAA+AGG | - | chr1.1:5749078-5749097 | MS.gene32982:intron | 15.0% |
| !! | AAATGATATGTCATAAGAAT+CGG | + | chr1.1:5748505-5748524 | None:intergenic | 20.0% |
| !! | AAATGCAGTATAAAATATCT+AGG | + | chr1.1:5750726-5750745 | None:intergenic | 20.0% |
| !! | AATAAATGAACTTCACAAAA+CGG | - | chr1.1:5749163-5749182 | MS.gene32982:intron | 20.0% |
| !! | AATATAGTTGAATAATTGGA+TGG | + | chr1.1:5752044-5752063 | None:intergenic | 20.0% |
| !! | AGAATTGAAAGAAACTTATA+TGG | - | chr1.1:5749941-5749960 | MS.gene32982:intron | 20.0% |
| !! | ATATAGTTGAATAATTGGAT+GGG | + | chr1.1:5752043-5752062 | None:intergenic | 20.0% |
| !! | ATTTATTACTTTATGTCAGT+AGG | + | chr1.1:5750063-5750082 | None:intergenic | 20.0% |
| !! | CTTTATATATCTCTGTTTAT+TGG | - | chr1.1:5751287-5751306 | MS.gene32982:intron | 20.0% |
| !! | GAATTTGAATACTGAAAAAA+TGG | - | chr1.1:5751402-5751421 | MS.gene32982:intron | 20.0% |
| !! | TAATAATCAATTAAGCACTT+TGG | - | chr1.1:5748543-5748562 | MS.gene32982:CDS | 20.0% |
| !! | TTCAGTATTCAAATTCAAAT+AGG | + | chr1.1:5751398-5751417 | None:intergenic | 20.0% |
| !! | TTTAATATAACTTCTTCAAC+TGG | + | chr1.1:5752243-5752262 | None:intergenic | 20.0% |
| !! | TTTATCATCTAGACTTTAAT+TGG | - | chr1.1:5748783-5748802 | MS.gene32982:intron | 20.0% |
| !! | TTTATTACTTTATGTCAGTA+GGG | + | chr1.1:5750062-5750081 | None:intergenic | 20.0% |
| !!! | AAAGAGTTGATCATATTATT+GGG | + | chr1.1:5751348-5751367 | None:intergenic | 20.0% |
| !!! | AGTTTCTTTAAGAAAGTAAT+AGG | - | chr1.1:5752489-5752508 | MS.gene32982:intron | 20.0% |
| !!! | ATTTTAACATTCGAGTTAAA+TGG | - | chr1.1:5752903-5752922 | MS.gene32982:intron | 20.0% |
| !!! | GAAACACATTTTCATATTAT+GGG | + | chr1.1:5751600-5751619 | None:intergenic | 20.0% |
| !!! | TGAAACACATTTTCATATTA+TGG | + | chr1.1:5751601-5751620 | None:intergenic | 20.0% |
| !!! | TGTAAGTTTCTTAATTCTTT+TGG | - | chr1.1:5748662-5748681 | MS.gene32982:intron | 20.0% |
| !!! | TTATACTGCATTTTATTATG+AGG | - | chr1.1:5750733-5750752 | MS.gene32982:intron | 20.0% |
| !!! | TTATTTTCCAGGATAAAAAT+GGG | + | chr1.1:5752756-5752775 | None:intergenic | 20.0% |
| !!! | TTTATTTTCCAGGATAAAAA+TGG | + | chr1.1:5752757-5752776 | None:intergenic | 20.0% |
| ! | AAAAACAACAGAAATACGAA+GGG | + | chr1.1:5752162-5752181 | None:intergenic | 25.0% |
| ! | AAAAATCCTAAGAGATATGA+AGG | + | chr1.1:5750614-5750633 | None:intergenic | 25.0% |
| ! | AAATCAGAAAGTTGAAGTAA+AGG | - | chr1.1:5751762-5751781 | MS.gene32982:CDS | 25.0% |
| ! | AAATTGTCTGTATAATCTTC+AGG | - | chr1.1:5750490-5750509 | MS.gene32982:intron | 25.0% |
| ! | AATATTCAATGGGTATGTTT+GGG | + | chr1.1:5752207-5752226 | None:intergenic | 25.0% |
| ! | AATTGTCTGTATAATCTTCA+GGG | - | chr1.1:5750491-5750510 | MS.gene32982:intron | 25.0% |
| ! | AATTTCAACAGTCAAAATGA+GGG | - | chr1.1:5752106-5752125 | MS.gene32982:CDS | 25.0% |
| ! | ACATGGTGTATATATCATAT+TGG | + | chr1.1:5749571-5749590 | None:intergenic | 25.0% |
| ! | ACTTGATTAACATCTCAAAT+AGG | + | chr1.1:5753265-5753284 | None:intergenic | 25.0% |
| ! | AGTCTTCAAATAAAAATTGC+CGG | - | chr1.1:5750440-5750459 | MS.gene32982:intron | 25.0% |
| ! | ATAAATGAACTTCACAAAAC+GGG | - | chr1.1:5749164-5749183 | MS.gene32982:intron | 25.0% |
| ! | ATAAGATTCAATTCACGTTT+AGG | - | chr1.1:5753129-5753148 | MS.gene32982:intron | 25.0% |
| ! | ATAATCCTAATATAGAACAC+AGG | + | chr1.1:5751725-5751744 | None:intergenic | 25.0% |
| ! | ATAATGACAAAGCAATTAGA+AGG | + | chr1.1:5751560-5751579 | None:intergenic | 25.0% |
| ! | ATATGAGCCTATATACTATA+GGG | + | chr1.1:5749256-5749275 | None:intergenic | 25.0% |
| ! | ATGACTAAAATTGACAAGAT+TGG | - | chr1.1:5749274-5749293 | MS.gene32982:CDS | 25.0% |
| ! | CATTATAAACTAACAACTCA+GGG | + | chr1.1:5752339-5752358 | None:intergenic | 25.0% |
| ! | GTCACATTTGATACATTATA+TGG | + | chr1.1:5752848-5752867 | None:intergenic | 25.0% |
| ! | GTGCTAGAAAATTGAAAATT+TGG | - | chr1.1:5751208-5751227 | MS.gene32982:CDS | 25.0% |
| ! | GTTATAAAAATTTATCGTGC+TGG | - | chr1.1:5749915-5749934 | MS.gene32982:intron | 25.0% |
| ! | TAATGTATCAAATGTGACTA+AGG | - | chr1.1:5752850-5752869 | MS.gene32982:intron | 25.0% |
| ! | TAATTTCAACAGTCAAAATG+AGG | - | chr1.1:5752105-5752124 | MS.gene32982:CDS | 25.0% |
| ! | TCTTATGACATATCATTTCT+CGG | - | chr1.1:5748507-5748526 | MS.gene32982:CDS | 25.0% |
| ! | TGATCTTACTCTTATACTAA+TGG | - | chr1.1:5750233-5750252 | MS.gene32982:intron | 25.0% |
| ! | TGTTAATAGAATAAGCTAAC+CGG | + | chr1.1:5750462-5750481 | None:intergenic | 25.0% |
| ! | TGTTCTATATTAGGATTATG+AGG | - | chr1.1:5751726-5751745 | MS.gene32982:CDS | 25.0% |
| ! | TTCACTATAAGCTCAAAAAT+TGG | + | chr1.1:5748918-5748937 | None:intergenic | 25.0% |
| ! | TTGGTTGAATTTATAGTGTT+TGG | + | chr1.1:5749413-5749432 | None:intergenic | 25.0% |
| ! | TTGTTCAGTTGAATATATCA+AGG | - | chr1.1:5750404-5750423 | MS.gene32982:intron | 25.0% |
| ! | TTTGACTGTTGAAATTAAGA+TGG | + | chr1.1:5752102-5752121 | None:intergenic | 25.0% |
| !! | ATCAATGTCCTTTTTCTATT+AGG | - | chr1.1:5751155-5751174 | MS.gene32982:intron | 25.0% |
| !! | CAAAGAGTTGATCATATTAT+TGG | + | chr1.1:5751349-5751368 | None:intergenic | 25.0% |
| !! | TATTTTCCAGGATAAAAATG+GGG | + | chr1.1:5752755-5752774 | None:intergenic | 25.0% |
| !! | TTAGAGATGAGAAAGTTTTT+CGG | - | chr1.1:5752616-5752635 | MS.gene32982:intron | 25.0% |
| !! | TTTTTCCCTTTTCAATCTAA+AGG | - | chr1.1:5749711-5749730 | MS.gene32982:intron | 25.0% |
| !!! | AGCAATTCTAGAATATTCAA+TGG | + | chr1.1:5752218-5752237 | None:intergenic | 25.0% |
| !!! | ATTTGTTTCCATTGTTTTTC+TGG | - | chr1.1:5749986-5750005 | MS.gene32982:CDS | 25.0% |
| !!! | CAAATGATTTGCTAAAACAA+TGG | - | chr1.1:5751505-5751524 | MS.gene32982:CDS | 25.0% |
| !!! | GCAATTCTAGAATATTCAAT+GGG | + | chr1.1:5752217-5752236 | None:intergenic | 25.0% |
| !!! | GTCATATTTTTTGACTATCA+TGG | + | chr1.1:5752826-5752845 | None:intergenic | 25.0% |
| !!! | TCTTAATTCTTTTGGTGTTT+TGG | - | chr1.1:5748670-5748689 | MS.gene32982:intron | 25.0% |
| !!! | TGCATATACCTTTGTTTTTA+AGG | - | chr1.1:5751317-5751336 | MS.gene32982:intron | 25.0% |
| !!! | TTTTATTAAATCGATTTGGC+TGG | - | chr1.1:5752447-5752466 | MS.gene32982:intron | 25.0% |
| !!! | TTTTCATTTCTTGTTTAAGG+TGG | - | chr1.1:5753294-5753313 | MS.gene32982:intron | 25.0% |
| AAAACAACAGAAATACGAAG+GGG | + | chr1.1:5752161-5752180 | None:intergenic | 30.0% | |
| AAATGCTTGATAGAAACAAG+TGG | - | chr1.1:5753372-5753391 | MS.gene32982:CDS | 30.0% | |
| ACAAGAGAGAGAAATTCTAT+TGG | + | chr1.1:5750586-5750605 | None:intergenic | 30.0% | |
| ACAGACTTCAAGTAAAAAGT+TGG | + | chr1.1:5750195-5750214 | None:intergenic | 30.0% | |
| AGAGCTTCACAGAAAAAAAA+AGG | + | chr1.1:5749871-5749890 | None:intergenic | 30.0% | |
| AGATATACTCAAAACACTTC+TGG | - | chr1.1:5752878-5752897 | MS.gene32982:intron | 30.0% | |
| AGTGAATAGCTTATAGCTTA+TGG | - | chr1.1:5748932-5748951 | MS.gene32982:intron | 30.0% | |
| AGTGTACCTTTAGATTGAAA+AGG | + | chr1.1:5749720-5749739 | None:intergenic | 30.0% | |
| ATATCCATTATCAGAGAATG+TGG | + | chr1.1:5752967-5752986 | None:intergenic | 30.0% | |
| ATCATACTTGAATAGTCTGA+AGG | - | chr1.1:5749744-5749763 | MS.gene32982:intron | 30.0% | |
| ATTTATCTGAGAGCTTACTT+TGG | - | chr1.1:5751263-5751282 | MS.gene32982:intron | 30.0% | |
| ATTTCCTTTGGTAAAAACAG+TGG | - | chr1.1:5749017-5749036 | MS.gene32982:intron | 30.0% | |
| CATATGAGCCTATATACTAT+AGG | + | chr1.1:5749257-5749276 | None:intergenic | 30.0% | |
| CTAATCCACCTAATAGAAAA+AGG | + | chr1.1:5751166-5751185 | None:intergenic | 30.0% | |
| CTTCACAGAAAAAAAAAGGA+AGG | + | chr1.1:5749867-5749886 | None:intergenic | 30.0% | |
| GAAAAACAACAGAAATACGA+AGG | + | chr1.1:5752163-5752182 | None:intergenic | 30.0% | |
| GAATATTCAATGGGTATGTT+TGG | + | chr1.1:5752208-5752227 | None:intergenic | 30.0% | |
| GCATTATAAACTAACAACTC+AGG | + | chr1.1:5752340-5752359 | None:intergenic | 30.0% | |
| GTGTACCTTTAGATTGAAAA+GGG | + | chr1.1:5749719-5749738 | None:intergenic | 30.0% | |
| GTTGAAGGTAATGTAATTCT+TGG | - | chr1.1:5752396-5752415 | MS.gene32982:intron | 30.0% | |
| TAATTAAACGCTATCAGAGA+GGG | + | chr1.1:5748878-5748897 | None:intergenic | 30.0% | |
| TCAATTCACGTTTAGGAAAA+TGG | - | chr1.1:5753136-5753155 | MS.gene32982:intron | 30.0% | |
| TTACCAAAGGATATATTCCA+GGG | + | chr1.1:5750692-5750711 | None:intergenic | 30.0% | |
| TTCTGTTACCAGAAAAACAA+TGG | + | chr1.1:5749997-5750016 | None:intergenic | 30.0% | |
| TTCTTCCTGTGTTCTATATT+AGG | - | chr1.1:5751717-5751736 | MS.gene32982:CDS | 30.0% | |
| TTGAAGAAAGTTCGCTAAAA+AGG | + | chr1.1:5753230-5753249 | None:intergenic | 30.0% | |
| TTTACCAAAGGATATATTCC+AGG | + | chr1.1:5750693-5750712 | None:intergenic | 30.0% | |
| ! | AATGTCCTTTTTCTATTAGG+TGG | - | chr1.1:5751158-5751177 | MS.gene32982:intron | 30.0% |
| ! | CAAGATAATTGAGGTACTTT+CGG | - | chr1.1:5749783-5749802 | MS.gene32982:intron | 30.0% |
| ! | GAGTTGTTAGTTTATAATGC+TGG | - | chr1.1:5752340-5752359 | MS.gene32982:intron | 30.0% |
| ! | TACTGCATTTTATTATGAGG+CGG | - | chr1.1:5750736-5750755 | MS.gene32982:intron | 30.0% |
| ! | TCAAACTGATGCATTTTAAG+CGG | - | chr1.1:5749663-5749682 | MS.gene32982:intron | 30.0% |
| ! | TCACTCTCTTTTCTTTCATT+TGG | - | chr1.1:5748755-5748774 | MS.gene32982:intron | 30.0% |
| ! | TCTTGATTTGATAACCATGA+CGG | - | chr1.1:5753181-5753200 | MS.gene32982:CDS | 30.0% |
| ! | TTATACAGACAATTTTGCAC+AGG | + | chr1.1:5750485-5750504 | None:intergenic | 30.0% |
| ! | TTCTAAAGATGATCTTCTAG+TGG | - | chr1.1:5748724-5748743 | MS.gene32982:intron | 30.0% |
| ! | TTTTCCACATTCTCTGATAA+TGG | - | chr1.1:5752960-5752979 | MS.gene32982:intron | 30.0% |
| ! | TTTTCTGTGAAGCTCTTAAA+TGG | - | chr1.1:5749875-5749894 | MS.gene32982:intron | 30.0% |
| !! | CTAAAACAATGGACTGAAAT+TGG | - | chr1.1:5751516-5751535 | MS.gene32982:CDS | 30.0% |
| !! | TATTAGGTGGATTAGTTATG+TGG | - | chr1.1:5751171-5751190 | MS.gene32982:intron | 30.0% |
| !! | TTTGCTTATAGCTTTGAGTT+TGG | - | chr1.1:5751070-5751089 | MS.gene32982:intron | 30.0% |
| !!! | CTGTTTTTACCAAAGGAAAT+TGG | + | chr1.1:5749017-5749036 | None:intergenic | 30.0% |
| !!! | CTTAGGATTTTTTCACTGAT+AGG | - | chr1.1:5750622-5750641 | MS.gene32982:intron | 30.0% |
| !!! | TGTTTTAGCAAATCATTTGC+TGG | + | chr1.1:5751504-5751523 | None:intergenic | 30.0% |
| AAACCGACCCTATAGTATAT+AGG | - | chr1.1:5749246-5749265 | MS.gene32982:CDS | 35.0% | |
| ACATAGTCCTAGTAATGTAG+TGG | + | chr1.1:5751983-5752002 | None:intergenic | 35.0% | |
| ACATATCCAGAATGTAGACT+CGG | + | chr1.1:5750665-5750684 | None:intergenic | 35.0% | |
| AGAGGATACAATGATCTAGA+TGG | + | chr1.1:5750857-5750876 | None:intergenic | 35.0% | |
| ATTACCTTCAACCTTCCTAA+TGG | + | chr1.1:5752388-5752407 | None:intergenic | 35.0% | |
| ATTCATGCTGATGTGTTTCA+AGG | - | chr1.1:5752294-5752313 | MS.gene32982:intron | 35.0% | |
| ATTCTGGATATGTATAACCC+TGG | - | chr1.1:5750672-5750691 | MS.gene32982:intron | 35.0% | |
| ATTGATCTTGATGCACATCA+AGG | - | chr1.1:5750522-5750541 | MS.gene32982:intron | 35.0% | |
| CAAATGCCAAGAAAGAGAAA+TGG | + | chr1.1:5750770-5750789 | None:intergenic | 35.0% | |
| CAAGCAATACTTATGATGTG+TGG | + | chr1.1:5752551-5752570 | None:intergenic | 35.0% | |
| CAATGTTGCCAAGATAATTG+AGG | - | chr1.1:5749774-5749793 | MS.gene32982:intron | 35.0% | |
| CATAGTCCTAGTAATGTAGT+GGG | + | chr1.1:5751982-5752001 | None:intergenic | 35.0% | |
| CATTTCTCTTTCTTGGCATT+TGG | - | chr1.1:5750768-5750787 | MS.gene32982:intron | 35.0% | |
| CATTTGCAAGTTAATTGCAG+AGG | + | chr1.1:5751467-5751486 | None:intergenic | 35.0% | |
| CTAATTAAACGCTATCAGAG+AGG | + | chr1.1:5748879-5748898 | None:intergenic | 35.0% | |
| CTCAATTATCTTGGCAACAT+TGG | + | chr1.1:5749776-5749795 | None:intergenic | 35.0% | |
| CTGATAGCAGATGAACTAAT+TGG | + | chr1.1:5749432-5749451 | None:intergenic | 35.0% | |
| CTTACTCTTATACTAATGGC+AGG | - | chr1.1:5750237-5750256 | MS.gene32982:intron | 35.0% | |
| CTTATAGCTCATAAGCTCAT+AGG | + | chr1.1:5749207-5749226 | None:intergenic | 35.0% | |
| GAATTGTGAATAATCGCGTT+TGG | - | chr1.1:5748565-5748584 | MS.gene32982:CDS | 35.0% | |
| GATTTACCTGTTTCCTGAAT+GGG | + | chr1.1:5750173-5750192 | None:intergenic | 35.0% | |
| GTAACAGAATGACATTTGCT+GGG | - | chr1.1:5750008-5750027 | MS.gene32982:intron | 35.0% | |
| GTTTCTCCATTTCTCTTTCT+TGG | - | chr1.1:5750761-5750780 | MS.gene32982:intron | 35.0% | |
| TAAATTGAAGATGGCCATTC+CGG | + | chr1.1:5751671-5751690 | None:intergenic | 35.0% | |
| TAACCCTGGAATATATCCTT+TGG | - | chr1.1:5750686-5750705 | MS.gene32982:intron | 35.0% | |
| TAAGAATCGGAGTAGATAAG+CGG | + | chr1.1:5748492-5748511 | None:intergenic | 35.0% | |
| TATATACTATAGGGTCGGTT+TGG | + | chr1.1:5749247-5749266 | None:intergenic | 35.0% | |
| TCAACTGAACAAAAGCAAAG+TGG | + | chr1.1:5750396-5750415 | None:intergenic | 35.0% | |
| TCAAGGAAATGGTCATGAAA+TGG | - | chr1.1:5750539-5750558 | MS.gene32982:intron | 35.0% | |
| TCCTTCTTCTTACCATAGAT+GGG | - | chr1.1:5752693-5752712 | MS.gene32982:intron | 35.0% | |
| TCTATTGGCCATACTATCAT+CGG | + | chr1.1:5750571-5750590 | None:intergenic | 35.0% | |
| TGATTACCCACTACATTACT+AGG | - | chr1.1:5751973-5751992 | MS.gene32982:intron | 35.0% | |
| TGTTTGCCTTCATATCTCTT+AGG | - | chr1.1:5750605-5750624 | MS.gene32982:intron | 35.0% | |
| TTTCATGCCATGATCACAAT+GGG | + | chr1.1:5750917-5750936 | None:intergenic | 35.0% | |
| ! | ACTGCATTTTATTATGAGGC+GGG | - | chr1.1:5750737-5750756 | MS.gene32982:intron | 35.0% |
| ! | ATCCGTTTGATTCGTCTAAA+TGG | - | chr1.1:5748630-5748649 | MS.gene32982:intron | 35.0% |
| ! | ATCTCTAAGAGCAATTCCAT+CGG | + | chr1.1:5752604-5752623 | None:intergenic | 35.0% |
| ! | CCACCATGAAAAGCATAAAT+GGG | + | chr1.1:5749627-5749646 | None:intergenic | 35.0% |
| ! | CTACCCATTTATGCTTTTCA+TGG | - | chr1.1:5749621-5749640 | MS.gene32982:intron | 35.0% |
| ! | CTTGATTTGATAACCATGAC+GGG | - | chr1.1:5753182-5753201 | MS.gene32982:CDS | 35.0% |
| ! | GTAAAGTTCTTTTCCCATTC+AGG | - | chr1.1:5750157-5750176 | MS.gene32982:intron | 35.0% |
| ! | TAACAGAATGACATTTGCTG+GGG | - | chr1.1:5750009-5750028 | MS.gene32982:intron | 35.0% |
| ! | TATTAGTTTAGAACCCGTCA+TGG | + | chr1.1:5753198-5753217 | None:intergenic | 35.0% |
| ! | TCATCTTTAGAAGCTTCAAG+AGG | + | chr1.1:5748716-5748735 | None:intergenic | 35.0% |
| ! | TCCACCATGAAAAGCATAAA+TGG | + | chr1.1:5749628-5749647 | None:intergenic | 35.0% |
| ! | TCCGTTTGATTCGTCTAAAT+GGG | - | chr1.1:5748631-5748650 | MS.gene32982:intron | 35.0% |
| ! | TTTTCATGCCATGATCACAA+TGG | + | chr1.1:5750918-5750937 | None:intergenic | 35.0% |
| !! | AGAAACTTATATGGTGTTGC+TGG | - | chr1.1:5749950-5749969 | MS.gene32982:intron | 35.0% |
| !! | CGAAAGTACCTCAATTATCT+TGG | + | chr1.1:5749785-5749804 | None:intergenic | 35.0% |
| !! | GGGATTAGCCTTAAAAACAA+AGG | + | chr1.1:5751328-5751347 | None:intergenic | 35.0% |
| !! | TTTAGGATGTGCATGTTTTC+CGG | - | chr1.1:5751649-5751668 | MS.gene32982:intron | 35.0% |
| !!! | AGCTACTTTTTACCAATCAG+AGG | - | chr1.1:5749457-5749476 | MS.gene32982:intron | 35.0% |
| !!! | CTATCCACTGTTTTTACCAA+AGG | + | chr1.1:5749024-5749043 | None:intergenic | 35.0% |
| !!! | GCTACTTTTTACCAATCAGA+GGG | - | chr1.1:5749458-5749477 | MS.gene32982:intron | 35.0% |
| AAAACCTCCTCCCACATTAA+TGG | + | chr1.1:5750311-5750330 | None:intergenic | 40.0% | |
| AAATTGGCATTGCCAAACAG+AGG | + | chr1.1:5748902-5748921 | None:intergenic | 40.0% | |
| ATAAATATAGGTCCCTCCTG+TGG | - | chr1.1:5750107-5750126 | MS.gene32982:intron | 40.0% | |
| ATACATGAAGTCCAGTGCTA+GGG | - | chr1.1:5753317-5753336 | MS.gene32982:intron | 40.0% | |
| ATCCTAGAAGGTGATCCATT+AGG | - | chr1.1:5752370-5752389 | MS.gene32982:intron | 40.0% | |
| ATGATCACAATGGGATTCAC+AGG | + | chr1.1:5750908-5750927 | None:intergenic | 40.0% | |
| ATTACCCTGAATACACATCG+TGG | + | chr1.1:5752719-5752738 | None:intergenic | 40.0% | |
| CACTGATAGGACCTTTGTAA+TGG | - | chr1.1:5750635-5750654 | MS.gene32982:intron | 40.0% | |
| CATCACTGTTCTGCAGAAAA+TGG | - | chr1.1:5750331-5750350 | MS.gene32982:intron | 40.0% | |
| CATCATTCACATCAAGACAG+AGG | + | chr1.1:5750875-5750894 | None:intergenic | 40.0% | |
| CCCCATTTAGACGAATCAAA+CGG | + | chr1.1:5748635-5748654 | None:intergenic | 40.0% | |
| CTCCTTCTTCTTACCATAGA+TGG | - | chr1.1:5752692-5752711 | MS.gene32982:intron | 40.0% | |
| CTCTGTCTTGATGTGAATGA+TGG | - | chr1.1:5750873-5750892 | MS.gene32982:intron | 40.0% | |
| CTCTTATACTAATGGCAGGT+TGG | - | chr1.1:5750241-5750260 | MS.gene32982:intron | 40.0% | |
| CTTGATGCACATCAAGGAAA+TGG | - | chr1.1:5750528-5750547 | MS.gene32982:intron | 40.0% | |
| GAGCCTATATACTATAGGGT+CGG | + | chr1.1:5749252-5749271 | None:intergenic | 40.0% | |
| GGATTTACCTGTTTCCTGAA+TGG | + | chr1.1:5750174-5750193 | None:intergenic | 40.0% | |
| GGTAACAGAATGACATTTGC+TGG | - | chr1.1:5750007-5750026 | MS.gene32982:intron | 40.0% | |
| TAGAAGGTGATCCATTAGGA+AGG | - | chr1.1:5752374-5752393 | MS.gene32982:intron | 40.0% | |
| TAGCTTATAGCTTATGGCTC+TGG | - | chr1.1:5748938-5748957 | MS.gene32982:intron | 40.0% | |
| TAGCTTATTGAGCCTCTGTT+TGG | - | chr1.1:5748986-5749005 | MS.gene32982:intron | 40.0% | |
| TGATCACAATGGGATTCACA+GGG | + | chr1.1:5750907-5750926 | None:intergenic | 40.0% | |
| TGATCCATTAGGAAGGTTGA+AGG | - | chr1.1:5752381-5752400 | MS.gene32982:intron | 40.0% | |
| TGATGTGTTTCAAGGTTGCT+GGG | - | chr1.1:5752302-5752321 | MS.gene32982:intron | 40.0% | |
| TGTGAATCCCATTGTGATCA+TGG | - | chr1.1:5750907-5750926 | MS.gene32982:intron | 40.0% | |
| TTACGTTGCACAAGACCATT+GGG | + | chr1.1:5750141-5750160 | None:intergenic | 40.0% | |
| TTCACCTTGAACTTTCAGAG+CGG | - | chr1.1:5751861-5751880 | MS.gene32982:intron | 40.0% | |
| TTTACGTTGCACAAGACCAT+TGG | + | chr1.1:5750142-5750161 | None:intergenic | 40.0% | |
| ! | CCCATTTATGCTTTTCATGG+TGG | - | chr1.1:5749624-5749643 | MS.gene32982:intron | 40.0% |
| ! | CCGTTTGATTCGTCTAAATG+GGG | - | chr1.1:5748632-5748651 | MS.gene32982:intron | 40.0% |
| ! | CTGAAATTAGACGAAGCACT+CGG | - | chr1.1:5751906-5751925 | MS.gene32982:intron | 40.0% |
| ! | GCGTTTAATTAGCCTCTGTT+TGG | - | chr1.1:5748887-5748906 | MS.gene32982:intron | 40.0% |
| ! | TCTCTAAGAGCAATTCCATC+GGG | + | chr1.1:5752603-5752622 | None:intergenic | 40.0% |
| ! | TCTTTTCCCATTCAGGAAAC+AGG | - | chr1.1:5750164-5750183 | MS.gene32982:intron | 40.0% |
| ! | TGAAATTAGACGAAGCACTC+GGG | - | chr1.1:5751907-5751926 | MS.gene32982:intron | 40.0% |
| ! | TTATACTAATGGCAGGTTGG+AGG | - | chr1.1:5750244-5750263 | MS.gene32982:intron | 40.0% |
| ! | TTCCTAATGGATCACCTTCT+AGG | + | chr1.1:5752375-5752394 | None:intergenic | 40.0% |
| !! | ATGGTGTTGCTGGAATTCTT+TGG | - | chr1.1:5749960-5749979 | MS.gene32982:intron | 40.0% |
| !! | CAAAAGCCCCATTTTTATCC+TGG | - | chr1.1:5752746-5752765 | MS.gene32982:intron | 40.0% |
| AACTTGCAAATGAAGTGCGC+AGG | - | chr1.1:5751475-5751494 | MS.gene32982:CDS | 45.0% | |
| AATGGGTATGTTTGGGAGTC+AGG | + | chr1.1:5752200-5752219 | None:intergenic | 45.0% | |
| ACAGAAATACGAAGGGGACA+AGG | + | chr1.1:5752155-5752174 | None:intergenic | 45.0% | |
| AGAGGATGGGCCATTAATGT+GGG | - | chr1.1:5750298-5750317 | MS.gene32982:intron | 45.0% | |
| AGTGTGAGCCATAGTACATC+TGG | - | chr1.1:5750976-5750995 | MS.gene32982:intron | 45.0% | |
| CAACAGTCAAAATGAGGGAG+AGG | - | chr1.1:5752111-5752130 | MS.gene32982:CDS | 45.0% | |
| CACTGTTCTGCAGAAAATGG+TGG | - | chr1.1:5750334-5750353 | MS.gene32982:intron | 45.0% | |
| CATTGCTTTCTTGTGCAACG+TGG | - | chr1.1:5751001-5751020 | MS.gene32982:intron | 45.0% | |
| CCTATTGTCATGCTCACTTC+AGG | - | chr1.1:5752660-5752679 | MS.gene32982:intron | 45.0% | |
| CCTGAAGTGAGCATGACAAT+AGG | + | chr1.1:5752663-5752682 | None:intergenic | 45.0% | |
| CTGATGTGTTTCAAGGTTGC+TGG | - | chr1.1:5752301-5752320 | MS.gene32982:intron | 45.0% | |
| GAGAGGGCTCATGACATTAT+TGG | + | chr1.1:5748862-5748881 | None:intergenic | 45.0% | |
| GATACATGAAGTCCAGTGCT+AGG | - | chr1.1:5753316-5753335 | MS.gene32982:intron | 45.0% | |
| GCCCATCTATGGTAAGAAGA+AGG | + | chr1.1:5752697-5752716 | None:intergenic | 45.0% | |
| GGACTTTGCCGATGATAGTA+TGG | - | chr1.1:5750560-5750579 | MS.gene32982:intron | 45.0% | |
| GGAGCAAAGAGCTTTACCAA+AGG | + | chr1.1:5750705-5750724 | None:intergenic | 45.0% | |
| GTGTGAGCCATAGTACATCT+GGG | - | chr1.1:5750977-5750996 | MS.gene32982:intron | 45.0% | |
| TAGATGGATGATTGAACCCC+AGG | + | chr1.1:5750841-5750860 | None:intergenic | 45.0% | |
| TATTGAGCCTCTGTTTGGCA+AGG | - | chr1.1:5748991-5749010 | MS.gene32982:intron | 45.0% | |
| TCACCTTGAACTTTCAGAGC+GGG | - | chr1.1:5751862-5751881 | MS.gene32982:intron | 45.0% | |
| TCGGCTTACATGTATGCATG+AGG | - | chr1.1:5749802-5749821 | MS.gene32982:intron | 45.0% | |
| TGTGAGCCATAGTACATCTG+GGG | - | chr1.1:5750978-5750997 | MS.gene32982:intron | 45.0% | |
| TGTTCTGCAGAAAATGGTGG+TGG | - | chr1.1:5750337-5750356 | MS.gene32982:intron | 45.0% | |
| TTCTTAAGGCTCCCTCTGAT+TGG | + | chr1.1:5749472-5749491 | None:intergenic | 45.0% | |
| TTGGCAAGGCCAATTTCCTT+TGG | - | chr1.1:5749005-5749024 | MS.gene32982:intron | 45.0% | |
| ! | GAAATTAGACGAAGCACTCG+GGG | - | chr1.1:5751908-5751927 | MS.gene32982:intron | 45.0% |
| ! | GATGTGCATGTTTTCCGGAA+TGG | - | chr1.1:5751654-5751673 | MS.gene32982:intron | 45.0% |
| ! | GCAGGTTGGAGGAACTATAT+TGG | - | chr1.1:5750255-5750274 | MS.gene32982:intron | 45.0% |
| ! | GCTAGTCTATTCAACGTTGC+TGG | - | chr1.1:5750790-5750809 | MS.gene32982:intron | 45.0% |
| !! | AAATTGGCCTTGCCAAACAG+AGG | + | chr1.1:5749001-5749020 | None:intergenic | 45.0% |
| !! | ATTAAAAAAAAATATGATTT+AGG | + | chr1.1:5751811-5751830 | None:intergenic | 5.0% |
| AACTTGCGAAGGAGAGAGGA+TGG | - | chr1.1:5750284-5750303 | MS.gene32982:intron | 50.0% | |
| ACGAGGTTCCCACCATTGTT+GGG | + | chr1.1:5751106-5751125 | None:intergenic | 50.0% | |
| ACTCTAGACCCCAACAATGG+TGG | - | chr1.1:5751094-5751113 | MS.gene32982:intron | 50.0% | |
| ACTTGCGAAGGAGAGAGGAT+GGG | - | chr1.1:5750285-5750304 | MS.gene32982:intron | 50.0% | |
| ATGGGCCACGATGTGTATTC+AGG | - | chr1.1:5752711-5752730 | MS.gene32982:intron | 50.0% | |
| ATTGGCTGCGAAACTTGCGA+AGG | - | chr1.1:5750273-5750292 | MS.gene32982:intron | 50.0% | |
| CCATTGGGAAACAATGCCAC+AGG | + | chr1.1:5750126-5750145 | None:intergenic | 50.0% | |
| CCTGTGGCATTGTTTCCCAA+TGG | - | chr1.1:5750123-5750142 | MS.gene32982:CDS | 50.0% | |
| CTCTAGACCCCAACAATGGT+GGG | - | chr1.1:5751095-5751114 | MS.gene32982:intron | 50.0% | |
| GAGAGGATGGGCCATTAATG+TGG | - | chr1.1:5750297-5750316 | MS.gene32982:intron | 50.0% | |
| GCAATGCCCCAGATGTACTA+TGG | + | chr1.1:5750987-5751006 | None:intergenic | 50.0% | |
| GCTGGAACTGACATCCTAGA+AGG | - | chr1.1:5752358-5752377 | MS.gene32982:intron | 50.0% | |
| TACACATCGTGGCCCATCTA+TGG | + | chr1.1:5752708-5752727 | None:intergenic | 50.0% | |
| TGCTTTCTTGTGCAACGTGG+TGG | - | chr1.1:5751004-5751023 | MS.gene32982:intron | 50.0% | |
| TGGGAAACAATGCCACAGGA+GGG | + | chr1.1:5750122-5750141 | None:intergenic | 50.0% | |
| TGGGCCACGATGTGTATTCA+GGG | - | chr1.1:5752712-5752731 | MS.gene32982:intron | 50.0% | |
| TTGGGAAACAATGCCACAGG+AGG | + | chr1.1:5750123-5750142 | None:intergenic | 50.0% | |
| TTTGGGAGTCAGGAGCTGAA+GGG | + | chr1.1:5752190-5752209 | None:intergenic | 50.0% | |
| ! | GACTCGGTCTGCCATTACAA+AGG | + | chr1.1:5750649-5750668 | None:intergenic | 50.0% |
| ! | TGACATGCTGCTTGTGTCCT+GGG | - | chr1.1:5750821-5750840 | MS.gene32982:intron | 50.0% |
| ! | TGCATGCAGATTAGTCCCGA+TGG | - | chr1.1:5752585-5752604 | MS.gene32982:intron | 50.0% |
| !! | AGTCCCGCTCTGAAAGTTCA+AGG | + | chr1.1:5751868-5751887 | None:intergenic | 50.0% |
| ATCTGCGATGACCCTAGCAC+TGG | + | chr1.1:5753331-5753350 | None:intergenic | 55.0% | |
| CACGAGGTTCCCACCATTGT+TGG | + | chr1.1:5751107-5751126 | None:intergenic | 55.0% | |
| CGAGGTTCCCACCATTGTTG+GGG | + | chr1.1:5751105-5751124 | None:intergenic | 55.0% | |
| GAGTCAGGAGCTGAAGGGAA+AGG | + | chr1.1:5752185-5752204 | None:intergenic | 55.0% | |
| GCGAAACTTGCGAAGGAGAG+AGG | - | chr1.1:5750280-5750299 | MS.gene32982:intron | 55.0% | |
| GGATGGGCCATTAATGTGGG+AGG | - | chr1.1:5750301-5750320 | MS.gene32982:intron | 55.0% | |
| GGCACTCTAGACCCCAACAA+TGG | - | chr1.1:5751091-5751110 | MS.gene32982:intron | 55.0% | |
| GGCAGACCGAGTCTACATTC+TGG | - | chr1.1:5750656-5750675 | MS.gene32982:intron | 55.0% | |
| GTTTCAAGGTTGCTGGGCGA+AGG | - | chr1.1:5752308-5752327 | MS.gene32982:intron | 55.0% | |
| GTTTGGGAGTCAGGAGCTGA+AGG | + | chr1.1:5752191-5752210 | None:intergenic | 55.0% | |
| TGGGCCATTAATGTGGGAGG+AGG | - | chr1.1:5750304-5750323 | MS.gene32982:intron | 55.0% | |
| ! | CTGACATGCTGCTTGTGTCC+TGG | - | chr1.1:5750820-5750839 | MS.gene32982:intron | 55.0% |
| ! | GACATGCTGCTTGTGTCCTG+GGG | - | chr1.1:5750822-5750841 | MS.gene32982:intron | 55.0% |
| ! | GTGCAACGTGGTGGTGAATC+TGG | - | chr1.1:5751013-5751032 | MS.gene32982:intron | 55.0% |
| AACGCAGCACCTAGAGCACG+AGG | + | chr1.1:5751123-5751142 | None:intergenic | 60.0% | |
| TGGTGGGAACCTCGTGCTCT+AGG | - | chr1.1:5751111-5751130 | MS.gene32982:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 5748486 | 5753413 | 5748486 | ID=MS.gene32982 |
| chr1.1 | mRNA | 5748486 | 5753413 | 5748486 | ID=MS.gene32982.t1;Parent=MS.gene32982 |
| chr1.1 | exon | 5753358 | 5753413 | 5753358 | ID=MS.gene32982.t1.exon1;Parent=MS.gene32982.t1 |
| chr1.1 | CDS | 5753358 | 5753413 | 5753358 | ID=cds.MS.gene32982.t1;Parent=MS.gene32982.t1 |
| chr1.1 | exon | 5753154 | 5753271 | 5753154 | ID=MS.gene32982.t1.exon2;Parent=MS.gene32982.t1 |
| chr1.1 | CDS | 5753154 | 5753271 | 5753154 | ID=cds.MS.gene32982.t1;Parent=MS.gene32982.t1 |
| chr1.1 | exon | 5752104 | 5752166 | 5752104 | ID=MS.gene32982.t1.exon3;Parent=MS.gene32982.t1 |
| chr1.1 | CDS | 5752104 | 5752166 | 5752104 | ID=cds.MS.gene32982.t1;Parent=MS.gene32982.t1 |
| chr1.1 | exon | 5751714 | 5751782 | 5751714 | ID=MS.gene32982.t1.exon4;Parent=MS.gene32982.t1 |
| chr1.1 | CDS | 5751714 | 5751782 | 5751714 | ID=cds.MS.gene32982.t1;Parent=MS.gene32982.t1 |
| chr1.1 | exon | 5751474 | 5751640 | 5751474 | ID=MS.gene32982.t1.exon5;Parent=MS.gene32982.t1 |
| chr1.1 | CDS | 5751474 | 5751640 | 5751474 | ID=cds.MS.gene32982.t1;Parent=MS.gene32982.t1 |
| chr1.1 | exon | 5751323 | 5751387 | 5751323 | ID=MS.gene32982.t1.exon6;Parent=MS.gene32982.t1 |
| chr1.1 | CDS | 5751323 | 5751387 | 5751323 | ID=cds.MS.gene32982.t1;Parent=MS.gene32982.t1 |
| chr1.1 | exon | 5751192 | 5751238 | 5751192 | ID=MS.gene32982.t1.exon7;Parent=MS.gene32982.t1 |
| chr1.1 | CDS | 5751192 | 5751238 | 5751192 | ID=cds.MS.gene32982.t1;Parent=MS.gene32982.t1 |
| chr1.1 | exon | 5750116 | 5750160 | 5750116 | ID=MS.gene32982.t1.exon8;Parent=MS.gene32982.t1 |
| chr1.1 | CDS | 5750116 | 5750160 | 5750116 | ID=cds.MS.gene32982.t1;Parent=MS.gene32982.t1 |
| chr1.1 | exon | 5749970 | 5750020 | 5749970 | ID=MS.gene32982.t1.exon9;Parent=MS.gene32982.t1 |
| chr1.1 | CDS | 5749970 | 5750020 | 5749970 | ID=cds.MS.gene32982.t1;Parent=MS.gene32982.t1 |
| chr1.1 | exon | 5749497 | 5749583 | 5749497 | ID=MS.gene32982.t1.exon10;Parent=MS.gene32982.t1 |
| chr1.1 | CDS | 5749497 | 5749583 | 5749497 | ID=cds.MS.gene32982.t1;Parent=MS.gene32982.t1 |
| chr1.1 | exon | 5749218 | 5749305 | 5749218 | ID=MS.gene32982.t1.exon11;Parent=MS.gene32982.t1 |
| chr1.1 | CDS | 5749218 | 5749305 | 5749218 | ID=cds.MS.gene32982.t1;Parent=MS.gene32982.t1 |
| chr1.1 | exon | 5748486 | 5748586 | 5748486 | ID=MS.gene32982.t1.exon12;Parent=MS.gene32982.t1 |
| chr1.1 | CDS | 5748486 | 5748586 | 5748486 | ID=cds.MS.gene32982.t1;Parent=MS.gene32982.t1 |
| Gene Sequence |
| Protein sequence |
