AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33172

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33172.t1 MTR_1g012960 98.925 186 2 0 3 188 250 435 8.78e-136 387
MS.gene33172.t1 MTR_3g106400 90.374 187 17 1 3 188 184 370 1.27e-121 348
MS.gene33172.t1 MTR_3g106400 90.374 187 17 1 3 188 184 370 1.28e-121 348
MS.gene33172.t1 MTR_3g106400 90.374 187 17 1 3 188 184 370 4.80e-121 348
MS.gene33172.t1 MTR_2g461240 86.096 187 25 1 2 188 169 354 9.20e-120 343
MS.gene33172.t1 MTR_4g116545 82.447 188 32 1 2 188 143 330 6.12e-112 322
MS.gene33172.t1 MTR_4g116545 85.227 176 25 1 2 176 143 318 1.43e-109 317
MS.gene33172.t1 MTR_5g011070 75.936 187 43 1 4 188 105 291 5.83e-96 281
MS.gene33172.t1 MTR_1g084060 54.217 83 38 0 91 173 163 245 6.52e-20 84.7
MS.gene33172.t1 MTR_1g084060 54.217 83 38 0 91 173 163 245 9.44e-20 84.7
MS.gene33172.t1 MTR_5g033720 37.580 157 81 2 17 173 155 294 4.52e-17 77.8
MS.gene33172.t1 MTR_2g024390 33.544 158 84 2 17 173 200 337 8.58e-17 77.4
MS.gene33172.t1 MTR_1g017080 48.193 83 43 0 91 173 260 342 1.99e-16 76.3
MS.gene33172.t1 MTR_5g085860 66.667 45 15 0 129 173 219 263 1.78e-15 73.2
MS.gene33172.t1 MTR_8g078480 29.286 140 62 4 71 173 496 635 2.01e-11 62.4
MS.gene33172.t1 MTR_4g019450 40.789 76 39 2 98 173 350 419 5.79e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33172.t1 AT5G25220 91.398 186 12 1 3 188 237 418 2.90e-122 352
MS.gene33172.t1 AT5G25220 91.398 186 12 1 3 188 237 418 3.37e-122 352
MS.gene33172.t1 AT5G11060 89.247 186 16 1 3 188 201 382 8.34e-121 347
MS.gene33172.t1 AT4G32040 79.365 189 37 2 2 188 190 378 9.32e-102 298
MS.gene33172.t1 AT4G32040 79.365 189 37 2 2 188 190 378 9.58e-102 298
MS.gene33172.t1 AT1G62990 72.487 189 47 2 3 188 104 290 7.61e-96 280
MS.gene33172.t1 AT1G70510 39.490 157 76 5 17 173 156 293 4.13e-20 85.9
MS.gene33172.t1 AT1G70510 39.490 157 76 5 17 173 152 289 5.75e-20 85.5
MS.gene33172.t1 AT1G23380 49.398 83 42 0 91 173 223 305 1.66e-18 81.6
MS.gene33172.t1 AT1G23380 49.398 83 42 0 91 173 225 307 1.85e-18 81.6
MS.gene33172.t1 AT4G08150 48.193 83 43 0 91 173 278 360 1.11e-16 77.4
MS.gene33172.t1 AT1G62360 49.398 83 42 0 91 173 261 343 1.93e-16 76.6
MS.gene33172.t1 AT5G02030 40.789 76 39 2 98 173 338 407 4.22e-11 61.2

Find 49 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTCTTACACGCTCCATT+AGG 0.305466 1.3:-8852814 None:intergenic
AACTAAAGCAAATTAATAAC+TGG 0.324917 1.3:+8853321 MS.gene33172:CDS
GTTAAACGTACTGTTGGATA+TGG 0.348322 1.3:-8853071 None:intergenic
TCAATCAAAGGAAGAGGAAT+TGG 0.349434 1.3:+8853348 MS.gene33172:CDS
GCAAGGTTGGTGCAGGAAAC+TGG 0.359590 1.3:+8853293 MS.gene33172:CDS
CAATCCTTACAAAGCCTAAC+AGG 0.372024 1.3:+8852047 MS.gene33172:CDS
TCATTCTCTGTTGGTATAAG+AGG 0.376610 1.3:-8852785 None:intergenic
GGTGCGGATAACATGGGATT+TGG 0.387749 1.3:+8852761 MS.gene33172:CDS
AGACGAGCTGGGAAACTTCC+TGG 0.389865 1.3:+8852999 MS.gene33172:CDS
TGTACCTGTTAGGCTTTGTA+AGG 0.392039 1.3:-8852051 None:intergenic
TTGTCTTACACGCTCCATTA+GGG 0.421646 1.3:-8852813 None:intergenic
GTCTGACGATGAAGATGAAC+AGG 0.422271 1.3:+8852697 MS.gene33172:CDS
TGACACAACTTCTGTCCTTA+AGG 0.425689 1.3:+8853022 MS.gene33172:CDS
CCATGCAATGGAAGCTGTAA+TGG 0.441406 1.3:+8852007 MS.gene33172:CDS
GTTGCCCCTGTACCTTCTCC+AGG 0.448447 1.3:-8852671 None:intergenic
AGAGAATGAAAGGTCCCTAA+TGG 0.452095 1.3:+8852799 MS.gene33172:CDS
TGGAAGCTGTAATGGCTTGT+TGG 0.463261 1.3:+8852015 MS.gene33172:CDS
GTGATTGCCACCAAGCCTTA+AGG 0.468131 1.3:-8853037 None:intergenic
AGGGACCTTTCATTCTCTGT+TGG 0.480001 1.3:-8852794 None:intergenic
GGAAGCTGTAATGGCTTGTT+GGG 0.483636 1.3:+8852016 MS.gene33172:CDS
TTCAAGACAGTAGAGGTTGA+AGG 0.491189 1.3:-8853380 None:intergenic
TGATGGCGGTGCGGATAACA+TGG 0.492193 1.3:+8852754 MS.gene33172:CDS
TCTTGAAGAGCAAACGCAAA+AGG 0.498087 1.3:+8853396 MS.gene33172:CDS
CATTCTCTGTTGGTATAAGA+GGG 0.502060 1.3:-8852784 None:intergenic
CAACTTCTGTCCTTAAGGCT+TGG 0.507609 1.3:+8853027 MS.gene33172:CDS
CTTCTGTCCTTAAGGCTTGG+TGG 0.509687 1.3:+8853030 MS.gene33172:CDS
GTTTCACCTGGAGAAGGTAC+AGG 0.511536 1.3:+8852665 MS.gene33172:CDS
AGATAAAGCAAGGTTGGTGC+AGG 0.511577 1.3:+8853286 MS.gene33172:CDS
CCATTACAGCTTCCATTGCA+TGG 0.512486 1.3:-8852007 None:intergenic
GAAAATTGTGGACATAAGAG+AGG 0.527462 1.3:+8852962 MS.gene33172:CDS
ATAACTGGTTTATCAATCAA+AGG 0.531319 1.3:+8853336 MS.gene33172:CDS
TCATACATTATAGGGTTACA+AGG 0.531432 1.3:+8852938 MS.gene33172:intron
ACATGTCCGCGTCCATGCAA+TGG 0.541622 1.3:+8851995 MS.gene33172:CDS
GGAGGAAGATAAAGCAAGGT+TGG 0.544598 1.3:+8853280 MS.gene33172:intron
TACTGTTGGATATGGCCACT+TGG 0.548498 1.3:-8853063 None:intergenic
CAGCTTCCATTGCATGGACG+CGG 0.571610 1.3:-8852001 None:intergenic
TTATACCAACAGAGAATGAA+AGG 0.571808 1.3:+8852789 MS.gene33172:CDS
GGTTTATCAATCAAAGGAAG+AGG 0.572061 1.3:+8853342 MS.gene33172:CDS
TTCAGGAGGAAGATAAAGCA+AGG 0.577710 1.3:+8853276 MS.gene33172:intron
TTTCACCTGGAGAAGGTACA+GGG 0.580246 1.3:+8852666 MS.gene33172:CDS
AGGACAGAAGTTGTGTCACC+AGG 0.595424 1.3:-8853017 None:intergenic
GCATGAACAGGAGTTTCACC+TGG 0.596871 1.3:+8852653 MS.gene33172:intron
TTTGCTCTTCAAGACAGTAG+AGG 0.614890 1.3:-8853387 None:intergenic
GGGTTACAAGGAGAAAATTG+TGG 0.616009 1.3:+8852950 MS.gene33172:intron
ACAGGAGTTTCACCTGGAGA+AGG 0.631882 1.3:+8852659 MS.gene33172:intron
GATGGCGGTGCGGATAACAT+GGG 0.643909 1.3:+8852755 MS.gene33172:CDS
AGTGACGCAAATCTGTTCGA+TGG 0.645362 1.3:+8852725 MS.gene33172:CDS
GGTGGCAATCACATTCCAAG+TGG 0.712840 1.3:+8853048 MS.gene33172:CDS
TTCACCTGGAGAAGGTACAG+GGG 0.738308 1.3:+8852667 MS.gene33172:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTATGATTAAAATAAA+AGG - chr1.3:8852928-8852947 None:intergenic 10.0%
!! TTAAGCAAAAATATAAATAA+CGG - chr1.3:8853237-8853256 None:intergenic 10.0%
!!! TATTTTAATCATACATTATA+GGG + chr1.3:8852930-8852949 MS.gene33172:intron 10.0%
!!! TTATTTTAATCATACATTAT+AGG + chr1.3:8852929-8852948 MS.gene33172:intron 10.0%
!! AACTAAAGCAAATTAATAAC+TGG + chr1.3:8853321-8853340 MS.gene33172:CDS 20.0%
!! GGAATAGTTATTAAAAAGAA+GGG - chr1.3:8852891-8852910 None:intergenic 20.0%
!!! ATCATTTTTACTTGTCAAAT+AGG - chr1.3:8852618-8852637 None:intergenic 20.0%
!!! CTAGATTTTATTACCAAATA+AGG + chr1.3:8851748-8851767 MS.gene33172:intron 20.0%
! AAAAGTGATTACAGAAAATG+TGG - chr1.3:8852161-8852180 None:intergenic 25.0%
! GGGAATAGTTATTAAAAAGA+AGG - chr1.3:8852892-8852911 None:intergenic 25.0%
! GTTTATTCAAAAACTGGAAA+GGG - chr1.3:8851642-8851661 None:intergenic 25.0%
! TAATCAAGGGAACATAATAT+AGG - chr1.3:8852186-8852205 None:intergenic 25.0%
! TATATAGTTAAACGTACTGT+TGG - chr1.3:8853080-8853099 None:intergenic 25.0%
! TCCAATCAAACCTAAAAAAT+GGG - chr1.3:8852554-8852573 None:intergenic 25.0%
! TGTTTATTCAAAAACTGGAA+AGG - chr1.3:8851643-8851662 None:intergenic 25.0%
!! ATAACTGGTTTATCAATCAA+AGG + chr1.3:8853336-8853355 MS.gene33172:CDS 25.0%
!! ATGATGGAATGAAAATAACT+TGG + chr1.3:8852134-8852153 MS.gene33172:intron 25.0%
!! TAATGTATTATGTGCTTTTC+AGG + chr1.3:8853259-8853278 MS.gene33172:intron 25.0%
!! TTTAAAACAGAACTAAGAGA+AGG - chr1.3:8851700-8851719 None:intergenic 25.0%
!! TTTAGTAATTCTGTCTGTTT+TGG + chr1.3:8852216-8852235 MS.gene33172:intron 25.0%
!! TTTTATTACCAAATAAGGAG+CGG + chr1.3:8851753-8851772 MS.gene33172:intron 25.0%
!!! ATGAGATTTTTTTTGTACAG+AGG + chr1.3:8851599-8851618 MS.gene33172:intron 25.0%
!!! GTGTTTGAAGAAAGTATTAA+AGG + chr1.3:8852308-8852327 MS.gene33172:intron 25.0%
!!! GTTAATTACATTTTAGTCAC+TGG - chr1.3:8851833-8851852 None:intergenic 25.0%
!!! TGAGATTTTTTTTGTACAGA+GGG + chr1.3:8851600-8851619 MS.gene33172:intron 25.0%
AAAAGCAGCAACATAATCAA+GGG - chr1.3:8852199-8852218 None:intergenic 30.0%
AAATATACTTCAGCCTTCAT+CGG - chr1.3:8852590-8852609 None:intergenic 30.0%
AGCATGAATTGAAACATGTA+AGG + chr1.3:8852843-8852862 MS.gene33172:intron 30.0%
ATAAAAGGAGATGAATCATG+TGG - chr1.3:8852913-8852932 None:intergenic 30.0%
ATGTTAGCTAATTGAACAGT+TGG - chr1.3:8852385-8852404 None:intergenic 30.0%
GAGTGTGTTTATTCAAAAAC+TGG - chr1.3:8851648-8851667 None:intergenic 30.0%
GCATGAATTGAAACATGTAA+GGG + chr1.3:8852844-8852863 MS.gene33172:intron 30.0%
GTCCAATCAAACCTAAAAAA+TGG - chr1.3:8852555-8852574 None:intergenic 30.0%
TAAAAGCAGCAACATAATCA+AGG - chr1.3:8852200-8852219 None:intergenic 30.0%
TAAAAGGAGATGAATCATGT+GGG - chr1.3:8852912-8852931 None:intergenic 30.0%
TCATACATTATAGGGTTACA+AGG + chr1.3:8852938-8852957 MS.gene33172:intron 30.0%
TGTTAGCTAATTGAACAGTT+GGG - chr1.3:8852384-8852403 None:intergenic 30.0%
TTATACCAACAGAGAATGAA+AGG + chr1.3:8852789-8852808 MS.gene33172:CDS 30.0%
TTGTTGCAATTGTTCTTTGA+AGG - chr1.3:8851976-8851995 None:intergenic 30.0%
! GTTTGATTGGACCTTTTTAA+AGG + chr1.3:8852563-8852582 MS.gene33172:intron 30.0%
! TGACCTACTTTGAAAATCTT+AGG + chr1.3:8852499-8852518 MS.gene33172:intron 30.0%
!! TAAAGCTTTGTTGCATATGA+TGG + chr1.3:8852118-8852137 MS.gene33172:intron 30.0%
!!! GACATTTTTTTGTACCTGTT+AGG - chr1.3:8852064-8852083 None:intergenic 30.0%
!!! GAGATTTTTTTTGTACAGAG+GGG + chr1.3:8851601-8851620 MS.gene33172:intron 30.0%
!!! GGTGTACTTTTGATTTAGAA+TGG + chr1.3:8851774-8851793 MS.gene33172:intron 30.0%
ATCTTCCAAGAATACAAGCA+GGG + chr1.3:8852437-8852456 MS.gene33172:intron 35.0%
ATGGGCCTATAAGAGATAAT+AGG - chr1.3:8852536-8852555 None:intergenic 35.0%
CATTCTCTGTTGGTATAAGA+GGG - chr1.3:8852787-8852806 None:intergenic 35.0%
GAAAATTGTGGACATAAGAG+AGG + chr1.3:8852962-8852981 MS.gene33172:CDS 35.0%
GCAATAAAACATAGTGTGAC+TGG - chr1.3:8851947-8851966 None:intergenic 35.0%
GGTTTATCAATCAAAGGAAG+AGG + chr1.3:8853342-8853361 MS.gene33172:CDS 35.0%
GTCTCTTGTAAGACTATACA+AGG + chr1.3:8852238-8852257 MS.gene33172:intron 35.0%
GTTAAACGTACTGTTGGATA+TGG - chr1.3:8853074-8853093 None:intergenic 35.0%
GTTAGCTAATTGAACAGTTG+GGG - chr1.3:8852383-8852402 None:intergenic 35.0%
TCAATCAAAGGAAGAGGAAT+TGG + chr1.3:8853348-8853367 MS.gene33172:CDS 35.0%
TCATTCTCTGTTGGTATAAG+AGG - chr1.3:8852788-8852807 None:intergenic 35.0%
! AGGCCTAAGATTTTCAAAGT+AGG - chr1.3:8852505-8852524 None:intergenic 35.0%
!! TGTATTATGTGCTTTTCAGG+AGG + chr1.3:8853262-8853281 MS.gene33172:intron 35.0%
!!! CTCTTATAGGCCCATTTTTT+AGG + chr1.3:8852541-8852560 MS.gene33172:intron 35.0%
!!! GCCCATTTTTTAGGTTTGAT+TGG + chr1.3:8852550-8852569 MS.gene33172:intron 35.0%
AAAGTACACCGCTCCTTATT+TGG - chr1.3:8851764-8851783 None:intergenic 40.0%
AGAGAATGAAAGGTCCCTAA+TGG + chr1.3:8852799-8852818 MS.gene33172:CDS 40.0%
ATGCACATTAGTCCATGTGT+TGG + chr1.3:8853185-8853204 MS.gene33172:intron 40.0%
CAATCCTTACAAAGCCTAAC+AGG + chr1.3:8852047-8852066 MS.gene33172:CDS 40.0%
CATCTTCCAAGAATACAAGC+AGG + chr1.3:8852436-8852455 MS.gene33172:intron 40.0%
GGGTTACAAGGAGAAAATTG+TGG + chr1.3:8852950-8852969 MS.gene33172:intron 40.0%
TCTTCCAAGAATACAAGCAG+GGG + chr1.3:8852438-8852457 MS.gene33172:intron 40.0%
TGACACAACTTCTGTCCTTA+AGG + chr1.3:8853022-8853041 MS.gene33172:CDS 40.0%
TTCAAGACAGTAGAGGTTGA+AGG - chr1.3:8853383-8853402 None:intergenic 40.0%
TTCAGGAGGAAGATAAAGCA+AGG + chr1.3:8853276-8853295 MS.gene33172:intron 40.0%
TTGCAAAGTTGCAATGCATG+TGG - chr1.3:8852264-8852283 None:intergenic 40.0%
TTGTCTTACACGCTCCATTA+GGG - chr1.3:8852816-8852835 None:intergenic 40.0%
TTTGCTCTTCAAGACAGTAG+AGG - chr1.3:8853390-8853409 None:intergenic 40.0%
! ACACATGGACTAATGTGCAT+TGG - chr1.3:8853185-8853204 None:intergenic 40.0%
! CACATGGACTAATGTGCATT+GGG - chr1.3:8853184-8853203 None:intergenic 40.0%
! CCTTCATCGGACCTTTAAAA+AGG - chr1.3:8852577-8852596 None:intergenic 40.0%
! GCTGGCCTATTATCTCTTAT+AGG + chr1.3:8852528-8852547 MS.gene33172:intron 40.0%
! TGTACCTGTTAGGCTTTGTA+AGG - chr1.3:8852054-8852073 None:intergenic 40.0%
!! CCTTTTTAAAGGTCCGATGA+AGG + chr1.3:8852574-8852593 MS.gene33172:intron 40.0%
!!! CTGTTCGATGGTAGTTTTGA+TGG + chr1.3:8852737-8852756 MS.gene33172:CDS 40.0%
!!! TTCGATGGTAGTTTTGATGG+CGG + chr1.3:8852740-8852759 MS.gene33172:CDS 40.0%
AGAGATAATAGGCCAGCTTC+AGG - chr1.3:8852525-8852544 None:intergenic 45.0%
AGGGACCTTTCATTCTCTGT+TGG - chr1.3:8852797-8852816 None:intergenic 45.0%
AGTGACGCAAATCTGTTCGA+TGG + chr1.3:8852725-8852744 MS.gene33172:CDS 45.0%
CAACTTCTGTCCTTAAGGCT+TGG + chr1.3:8853027-8853046 MS.gene33172:CDS 45.0%
CCATGCAATGGAAGCTGTAA+TGG + chr1.3:8852007-8852026 MS.gene33172:CDS 45.0%
CCATTACAGCTTCCATTGCA+TGG - chr1.3:8852010-8852029 None:intergenic 45.0%
CTTGTCTTACACGCTCCATT+AGG - chr1.3:8852817-8852836 None:intergenic 45.0%
CTTTCTGTGATGCCAACACA+TGG - chr1.3:8853200-8853219 None:intergenic 45.0%
GAAAATCTTAGGCCTGAAGC+TGG + chr1.3:8852510-8852529 MS.gene33172:intron 45.0%
GGAGGAAGATAAAGCAAGGT+TGG + chr1.3:8853280-8853299 MS.gene33172:intron 45.0%
GTCTGACGATGAAGATGAAC+AGG + chr1.3:8852697-8852716 MS.gene33172:CDS 45.0%
GTGTGACTGGAACATCAAGA+AGG - chr1.3:8851934-8851953 None:intergenic 45.0%
TACTGTTGGATATGGCCACT+TGG - chr1.3:8853066-8853085 None:intergenic 45.0%
TTTCTCATCGCTGCATGAAC+AGG + chr1.3:8852641-8852660 MS.gene33172:intron 45.0%
! AGACTAGACAAGGCTTTGTG+AGG + chr1.3:8852468-8852487 MS.gene33172:intron 45.0%
! ATTTTACGCAAGAGACGAGC+TGG + chr1.3:8852987-8853006 MS.gene33172:CDS 45.0%
! TGGAAGCTGTAATGGCTTGT+TGG + chr1.3:8852015-8852034 MS.gene33172:CDS 45.0%
! TTTCACCTGGAGAAGGTACA+GGG + chr1.3:8852666-8852685 MS.gene33172:CDS 45.0%
! TTTTACGCAAGAGACGAGCT+GGG + chr1.3:8852988-8853007 MS.gene33172:CDS 45.0%
!! AGATAAAGCAAGGTTGGTGC+AGG + chr1.3:8853286-8853305 MS.gene33172:CDS 45.0%
!! GGAAGCTGTAATGGCTTGTT+GGG + chr1.3:8852016-8852035 MS.gene33172:CDS 45.0%
ACAGGAGTTTCACCTGGAGA+AGG + chr1.3:8852659-8852678 MS.gene33172:intron 50.0%
AGGACAGAAGTTGTGTCACC+AGG - chr1.3:8853020-8853039 None:intergenic 50.0%
CTTCTGTCCTTAAGGCTTGG+TGG + chr1.3:8853030-8853049 MS.gene33172:CDS 50.0%
GCATGAACAGGAGTTTCACC+TGG + chr1.3:8852653-8852672 MS.gene33172:intron 50.0%
GGGCAGGATTAGACTAGACA+AGG + chr1.3:8852458-8852477 MS.gene33172:intron 50.0%
GGTGCGGATAACATGGGATT+TGG + chr1.3:8852761-8852780 MS.gene33172:CDS 50.0%
GGTGGCAATCACATTCCAAG+TGG + chr1.3:8853048-8853067 MS.gene33172:CDS 50.0%
GTGATTGCCACCAAGCCTTA+AGG - chr1.3:8853040-8853059 None:intergenic 50.0%
! GTTTCACCTGGAGAAGGTAC+AGG + chr1.3:8852665-8852684 MS.gene33172:CDS 50.0%
! TTCACCTGGAGAAGGTACAG+GGG + chr1.3:8852667-8852686 MS.gene33172:CDS 50.0%
!!! TGGTAGTTTTGATGGCGGTG+CGG + chr1.3:8852745-8852764 MS.gene33172:CDS 50.0%
ACATGTCCGCGTCCATGCAA+TGG + chr1.3:8851995-8852014 MS.gene33172:CDS 55.0%
AGACGAGCTGGGAAACTTCC+TGG + chr1.3:8852999-8853018 MS.gene33172:CDS 55.0%
CAGCTTCCATTGCATGGACG+CGG - chr1.3:8852004-8852023 None:intergenic 55.0%
CCAAGAATACAAGCAGGGGC+AGG + chr1.3:8852442-8852461 MS.gene33172:intron 55.0%
CCTGCCCCTGCTTGTATTCT+TGG - chr1.3:8852445-8852464 None:intergenic 55.0%
! GATGGCGGTGCGGATAACAT+GGG + chr1.3:8852755-8852774 MS.gene33172:CDS 55.0%
!! GCAAGGTTGGTGCAGGAAAC+TGG + chr1.3:8853293-8853312 MS.gene33172:CDS 55.0%
!! TGATGGCGGTGCGGATAACA+TGG + chr1.3:8852754-8852773 MS.gene33172:CDS 55.0%
GTTGCCCCTGTACCTTCTCC+AGG - chr1.3:8852674-8852693 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 8851514 8853417 8851514 ID=MS.gene33172
chr1.3 mRNA 8851514 8853417 8851514 ID=MS.gene33172.t1;Parent=MS.gene33172
chr1.3 exon 8851514 8851526 8851514 ID=MS.gene33172.t1.exon1;Parent=MS.gene33172.t1
chr1.3 CDS 8851514 8851526 8851514 ID=cds.MS.gene33172.t1;Parent=MS.gene33172.t1
chr1.3 exon 8851982 8852068 8851982 ID=MS.gene33172.t1.exon2;Parent=MS.gene33172.t1
chr1.3 CDS 8851982 8852068 8851982 ID=cds.MS.gene33172.t1;Parent=MS.gene33172.t1
chr1.3 exon 8852663 8852859 8852663 ID=MS.gene33172.t1.exon3;Parent=MS.gene33172.t1
chr1.3 CDS 8852663 8852859 8852663 ID=cds.MS.gene33172.t1;Parent=MS.gene33172.t1
chr1.3 exon 8852951 8853082 8852951 ID=MS.gene33172.t1.exon4;Parent=MS.gene33172.t1
chr1.3 CDS 8852951 8853082 8852951 ID=cds.MS.gene33172.t1;Parent=MS.gene33172.t1
chr1.3 exon 8853281 8853417 8853281 ID=MS.gene33172.t1.exon5;Parent=MS.gene33172.t1
chr1.3 CDS 8853281 8853417 8853281 ID=cds.MS.gene33172.t1;Parent=MS.gene33172.t1
Gene Sequence

>MS.gene33172

ATGGGGGTGGAGGGTATGCAGTGTTTCAGTTCAATTTATTACTATTTATTTACATTTGATAAAAAAAATATTTATTTATTTTACAATGAGATTTTTTTTGTACAGAGGGGAAAATAGCACACACACCCTTTCCAGTTTTTGAATAAACACACTCAGTCTTATTTGTCTGAGAAATTGCACATACCTTCTCTTAGTTCTGTTTTAAATGACACAATCTCATGTTTGTTGAAAGTTCTAGATTTTATTACCAAATAAGGAGCGGTGTACTTTTGATTTAGAATGGTAAAGTATGAAATTATAGTTGTTGATTAAGAATCCAGTGACTAAAATGTAATTAACTTTGTCTTAGTAATTTTGTGAAGAAACTTCAATCATCAGTGAACTATTAAATATGATTCAGCTGCAATCTTGACATTTCCTTCTTGATGTTCCAGTCACACTATGTTTTATTGCTGTGTTCCTTCAAAGAACAATTGCAACAACATGTCCGCGTCCATGCAATGGAAGCTGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGCCTAACAGGTACAAAAAAATGTCTTCTTTTACTAATTGCTATATGTTAGAATTAAAATAAAGCTTTGTTGCATATGATGGAATGAAAATAACTTGGTCCACATTTTCTGTAATCACTTTTTGCCTATATTATGTTCCCTTGATTATGTTGCTGCTTTTAGTAATTCTGTCTGTTTTGGTCTCTTGTAAGACTATACAAGGCCACATGCATTGCAACTTTGCAACAAATAGAATGATGACAATTTCTTGTGTTTGAAGAAAGTATTAAAGGATTCACAGTGCTTTAGCTTGTTGTTTATATGTTTATCATGTTTTTTGATCCCCAACTGTTCAATTAGCTAACATCGTGTGCGCATATCAAACTGCAAAAGTAAAACATCTTCCAAGAATACAAGCAGGGGCAGGATTAGACTAGACAAGGCTTTGTGAGGTCTAAGCATGACCTACTTTGAAAATCTTAGGCCTGAAGCTGGCCTATTATCTCTTATAGGCCCATTTTTTAGGTTTGATTGGACCTTTTTAAAGGTCCGATGAAGGCTGAAGTATATTTCAAAGCCTATTTGACAAGTAAAAATGATAATTTTCTCATCGCTGCATGAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGACGATGAAGATGAACAGGTAGATAGTGACGCAAATCTGTTCGATGGTAGTTTTGATGGCGGTGCGGATAACATGGGATTTGGCCCTCTTATACCAACAGAGAATGAAAGGTCCCTAATGGAGCGTGTAAGACAAGAGCTTAAGCATGAATTGAAACATGTAAGGGATATTAGTGATTTTTCATCTACCCTTCTTTTTAATAACTATTCCCACATGATTCATCTCCTTTTATTTTAATCATACATTATAGGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTCCTTAAGGCTTGGTGGCAATCACATTCCAAGTGGCCATATCCAACAGTACGTTTAACTATATATCAAATTCAGTTATAGAAATAGCTTGTATATACTTTATATGATAAAATCTAATTGAATAAGCGCTTAATTTAGTTATTTATCCCAATGCACATTAGTCCATGTGTTGGCATCACAGAAAGATTACTACACGATTCCGTTATTTATATTTTTGCTTAACTTAATGTATTATGTGCTTTTCAGGAGGAAGATAAAGCAAGGTTGGTGCAGGAAACTGGTTTGCAACTAAAGCAAATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACCTCTACTGTCTTGAAGAGCAAACGCAAAAG
Protein sequence

>MS.gene33172.t1

MGVEEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGSFDGGADNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRK