Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060927.t1 | XP_013465816.1 | 98.1 | 262 | 1 | 1 | 1 | 258 | 178 | 439 | 3.90E-138 | 500.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060927.t1 | O04136 | 90.7 | 257 | 21 | 2 | 1 | 255 | 172 | 427 | 1.2e-127 | 457.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060927.t1 | A0A072VDL5 | 98.1 | 262 | 1 | 1 | 1 | 258 | 178 | 439 | 2.8e-138 | 500.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene060927.t1 | TF | HB-KNOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060927 | MS.gene070491 | 0.822169 | 2.73E-53 | -1.69E-46 |
| MS.gene060927 | MS.gene070950 | 0.800553 | 1.37E-48 | -1.69E-46 |
| MS.gene060927 | MS.gene33172 | 0.905378 | 4.57E-80 | -1.69E-46 |
| MS.gene060927 | MS.gene37910 | 0.822631 | 2.14E-53 | -1.69E-46 |
| MS.gene060927 | MS.gene52353 | 0.800506 | 1.40E-48 | -1.69E-46 |
| MS.gene060927 | MS.gene57479 | 0.811487 | 6.83E-51 | -1.69E-46 |
| MS.gene060927 | MS.gene61225 | 0.901879 | 1.71E-78 | -1.69E-46 |
| MS.gene060927 | MS.gene81602 | 0.824425 | 8.13E-54 | -1.69E-46 |
| MS.gene060927 | MS.gene93994 | 0.809671 | 1.69E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060927.t1 | MTR_1g012960 | 98.092 | 262 | 1 | 1 | 1 | 258 | 178 | 439 | 0.0 | 536 |
| MS.gene060927.t1 | MTR_3g106400 | 88.213 | 263 | 25 | 2 | 1 | 257 | 111 | 373 | 2.58e-171 | 477 |
| MS.gene060927.t1 | MTR_3g106400 | 88.889 | 261 | 23 | 2 | 1 | 255 | 111 | 371 | 3.52e-171 | 477 |
| MS.gene060927.t1 | MTR_3g106400 | 88.889 | 261 | 23 | 2 | 1 | 255 | 111 | 371 | 2.10e-170 | 477 |
| MS.gene060927.t1 | MTR_2g461240 | 83.784 | 259 | 38 | 2 | 1 | 256 | 99 | 356 | 2.90e-164 | 459 |
| MS.gene060927.t1 | MTR_4g116545 | 81.712 | 257 | 45 | 2 | 1 | 255 | 75 | 331 | 1.26e-157 | 441 |
| MS.gene060927.t1 | MTR_4g116545 | 83.607 | 244 | 38 | 2 | 1 | 242 | 75 | 318 | 3.01e-154 | 433 |
| MS.gene060927.t1 | MTR_5g011070 | 70.385 | 260 | 71 | 2 | 2 | 255 | 33 | 292 | 2.05e-129 | 369 |
| MS.gene060927.t1 | MTR_1g084060 | 35.000 | 240 | 135 | 6 | 2 | 239 | 25 | 245 | 8.47e-32 | 118 |
| MS.gene060927.t1 | MTR_1g084060 | 35.000 | 240 | 135 | 6 | 2 | 239 | 25 | 245 | 1.76e-31 | 118 |
| MS.gene060927.t1 | MTR_2g024390 | 30.833 | 240 | 141 | 3 | 1 | 239 | 122 | 337 | 2.22e-29 | 114 |
| MS.gene060927.t1 | MTR_5g033720 | 34.025 | 241 | 132 | 5 | 2 | 239 | 78 | 294 | 2.90e-27 | 107 |
| MS.gene060927.t1 | MTR_1g017080 | 32.645 | 242 | 137 | 6 | 1 | 239 | 124 | 342 | 9.29e-27 | 107 |
| MS.gene060927.t1 | MTR_5g085860 | 31.276 | 243 | 133 | 5 | 1 | 239 | 51 | 263 | 4.83e-23 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060927.t1 | AT5G25220 | 89.231 | 260 | 19 | 2 | 1 | 255 | 164 | 419 | 4.50e-171 | 478 |
| MS.gene060927.t1 | AT5G25220 | 89.189 | 259 | 19 | 2 | 1 | 254 | 164 | 418 | 3.45e-170 | 477 |
| MS.gene060927.t1 | AT5G11060 | 87.645 | 259 | 23 | 2 | 1 | 254 | 128 | 382 | 9.09e-169 | 472 |
| MS.gene060927.t1 | AT4G32040 | 79.070 | 258 | 52 | 2 | 1 | 256 | 123 | 380 | 5.76e-148 | 419 |
| MS.gene060927.t1 | AT4G32040 | 79.377 | 257 | 51 | 2 | 1 | 255 | 123 | 379 | 8.96e-148 | 418 |
| MS.gene060927.t1 | AT1G62990 | 69.380 | 258 | 72 | 3 | 2 | 254 | 35 | 290 | 2.73e-130 | 370 |
| MS.gene060927.t1 | AT1G70510 | 35.537 | 242 | 125 | 8 | 2 | 239 | 75 | 289 | 1.48e-31 | 118 |
| MS.gene060927.t1 | AT1G70510 | 34.298 | 242 | 132 | 7 | 2 | 239 | 75 | 293 | 6.61e-30 | 114 |
| MS.gene060927.t1 | AT1G23380 | 34.959 | 246 | 121 | 8 | 2 | 239 | 91 | 305 | 1.71e-28 | 110 |
| MS.gene060927.t1 | AT4G08150 | 33.865 | 251 | 125 | 7 | 1 | 239 | 139 | 360 | 7.77e-27 | 107 |
| MS.gene060927.t1 | AT1G23380 | 34.677 | 248 | 121 | 9 | 2 | 239 | 91 | 307 | 1.47e-26 | 105 |
| MS.gene060927.t1 | AT1G62360 | 32.520 | 246 | 131 | 5 | 1 | 239 | 126 | 343 | 4.03e-25 | 102 |
Find 66 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACCAAACGCAGAGTATT+TGG | 0.277454 | 1.2:-8715784 | None:intergenic |
| CTTGTCTTACACGCTCCATT+AGG | 0.305466 | 1.2:-8717605 | None:intergenic |
| AACTAAAGCAAATTAATAAC+TGG | 0.324917 | 1.2:+8718112 | MS.gene060927:CDS |
| GTTAAACGTACTGTTGGATA+TGG | 0.348322 | 1.2:-8717862 | None:intergenic |
| TCAATCAAAGGAAGAGGAAT+TGG | 0.349434 | 1.2:+8718139 | MS.gene060927:CDS |
| GCAAGGTTGGTGCAGGAAAC+TGG | 0.359590 | 1.2:+8718084 | MS.gene060927:CDS |
| CAATCCTTACAAAGCCTAAC+AGG | 0.372024 | 1.2:+8716838 | MS.gene060927:CDS |
| TCATTCTCTGTTGGTATAAG+AGG | 0.376610 | 1.2:-8717576 | None:intergenic |
| CAAAGAACTTGACCATTTCA+TGG | 0.380421 | 1.2:+8715818 | MS.gene060927:CDS |
| GGTGCGGATAACATGGGATT+TGG | 0.387749 | 1.2:+8717552 | MS.gene060927:CDS |
| AGACGAGCTGGGAAACTTCC+TGG | 0.389865 | 1.2:+8717790 | MS.gene060927:CDS |
| TGTACCTGTTAGGCTTTGTA+AGG | 0.392039 | 1.2:-8716842 | None:intergenic |
| TTGTCTTACACGCTCCATTA+GGG | 0.421646 | 1.2:-8717604 | None:intergenic |
| GTCTGACGATGAAGATGAAC+AGG | 0.422271 | 1.2:+8717488 | MS.gene060927:CDS |
| TGACACAACTTCTGTCCTTA+AGG | 0.425689 | 1.2:+8717813 | MS.gene060927:CDS |
| CCATGCAATGGAAGCTGTAA+TGG | 0.441406 | 1.2:+8716798 | MS.gene060927:CDS |
| GTTGCCCCTGTACCTTCTCC+AGG | 0.448447 | 1.2:-8717462 | None:intergenic |
| TTGTTGCAATTGTTCTTTGA+AGG | 0.451938 | 1.2:-8716764 | None:intergenic |
| AGAGAATGAAAGGTCCCTAA+TGG | 0.452095 | 1.2:+8717590 | MS.gene060927:CDS |
| CGGCACATGTGGCGTGTTTG+AGG | 0.457717 | 1.2:+8715694 | MS.gene060927:CDS |
| TGGAAGCTGTAATGGCTTGT+TGG | 0.463261 | 1.2:+8716806 | MS.gene060927:CDS |
| GTGATTGCCACCAAGCCTTA+AGG | 0.468131 | 1.2:-8717828 | None:intergenic |
| AAATACTCTGCGTTTGGTGG+TGG | 0.474689 | 1.2:+8715786 | MS.gene060927:CDS |
| AGGGACCTTTCATTCTCTGT+TGG | 0.480001 | 1.2:-8717585 | None:intergenic |
| GTTGTATGAACAGTTGTTGT+CGG | 0.481534 | 1.2:+8715674 | MS.gene060927:CDS |
| GGAAGCTGTAATGGCTTGTT+GGG | 0.483636 | 1.2:+8716807 | MS.gene060927:CDS |
| TTCAAGACAGTAGAGGTTGA+AGG | 0.491189 | 1.2:-8718171 | None:intergenic |
| TGATGGCGGTGCGGATAACA+TGG | 0.492193 | 1.2:+8717545 | MS.gene060927:CDS |
| GCCAAATACTCTGCGTTTGG+TGG | 0.493142 | 1.2:+8715783 | MS.gene060927:CDS |
| TCTTGAAGAGCAAACGCAAA+AGG | 0.498087 | 1.2:+8718187 | MS.gene060927:CDS |
| CATTCTCTGTTGGTATAAGA+GGG | 0.502060 | 1.2:-8717575 | None:intergenic |
| CAACTTCTGTCCTTAAGGCT+TGG | 0.507609 | 1.2:+8717818 | MS.gene060927:CDS |
| CTTCTGTCCTTAAGGCTTGG+TGG | 0.509687 | 1.2:+8717821 | MS.gene060927:CDS |
| GTTTCACCTGGAGAAGGTAC+AGG | 0.511536 | 1.2:+8717456 | MS.gene060927:CDS |
| AGATAAAGCAAGGTTGGTGC+AGG | 0.511577 | 1.2:+8718077 | MS.gene060927:CDS |
| CCATTACAGCTTCCATTGCA+TGG | 0.512486 | 1.2:-8716798 | None:intergenic |
| GAAAATTGTGGACATAAGAG+AGG | 0.527462 | 1.2:+8717753 | MS.gene060927:CDS |
| GTGGCCAAATACTCTGCGTT+TGG | 0.531063 | 1.2:+8715780 | MS.gene060927:CDS |
| ATAACTGGTTTATCAATCAA+AGG | 0.531319 | 1.2:+8718127 | MS.gene060927:CDS |
| TCATACATTATAGGGTTACA+AGG | 0.531432 | 1.2:+8717729 | MS.gene060927:intron |
| ACATGTCCGCGTCCATGCAA+TGG | 0.541622 | 1.2:+8716786 | MS.gene060927:CDS |
| GGAGGAAGATAAAGCAAGGT+TGG | 0.544598 | 1.2:+8718071 | MS.gene060927:intron |
| TACTGTTGGATATGGCCACT+TGG | 0.548498 | 1.2:-8717854 | None:intergenic |
| ATCCTCGGTAACTGATCCAC+CGG | 0.551656 | 1.2:-8715726 | None:intergenic |
| CAGCTTCCATTGCATGGACG+CGG | 0.571610 | 1.2:-8716792 | None:intergenic |
| TTATACCAACAGAGAATGAA+AGG | 0.571808 | 1.2:+8717580 | MS.gene060927:CDS |
| GGTTTATCAATCAAAGGAAG+AGG | 0.572061 | 1.2:+8718133 | MS.gene060927:CDS |
| TTCAGGAGGAAGATAAAGCA+AGG | 0.577710 | 1.2:+8718067 | MS.gene060927:intron |
| TTTCACCTGGAGAAGGTACA+GGG | 0.580246 | 1.2:+8717457 | MS.gene060927:CDS |
| AGGACAGAAGTTGTGTCACC+AGG | 0.595424 | 1.2:-8717808 | None:intergenic |
| GCATGAACAGGAGTTTCACC+TGG | 0.596871 | 1.2:+8717444 | MS.gene060927:intron |
| ACAGTTGTTGTCGGCACATG+TGG | 0.599267 | 1.2:+8715683 | MS.gene060927:CDS |
| TTTGCTCTTCAAGACAGTAG+AGG | 0.614890 | 1.2:-8718178 | None:intergenic |
| GGGTTACAAGGAGAAAATTG+TGG | 0.616009 | 1.2:+8717741 | MS.gene060927:intron |
| GTGTTTGAGGATAGCAACGC+CGG | 0.619072 | 1.2:+8715707 | MS.gene060927:CDS |
| GCTAACTGAGCATCAATCCT+CGG | 0.622785 | 1.2:-8715741 | None:intergenic |
| ACAGGAGTTTCACCTGGAGA+AGG | 0.631882 | 1.2:+8717450 | MS.gene060927:intron |
| GACAACAACTGTTCATACAA+CGG | 0.638324 | 1.2:-8715672 | None:intergenic |
| GATGGCGGTGCGGATAACAT+GGG | 0.643909 | 1.2:+8717546 | MS.gene060927:CDS |
| GTTAGCACAGTCTCAGAATG+TGG | 0.643950 | 1.2:+8715758 | MS.gene060927:CDS |
| AGTGACGCAAATCTGTTCGA+TGG | 0.645362 | 1.2:+8717516 | MS.gene060927:CDS |
| TTTGAGGATAGCAACGCCGG+TGG | 0.647198 | 1.2:+8715710 | MS.gene060927:CDS |
| CGCCGGTGGATCAGTTACCG+AGG | 0.669945 | 1.2:+8715724 | MS.gene060927:CDS |
| AGCACAGTCTCAGAATGTGG+TGG | 0.676786 | 1.2:+8715761 | MS.gene060927:CDS |
| GGTGGCAATCACATTCCAAG+TGG | 0.712840 | 1.2:+8717839 | MS.gene060927:CDS |
| TTCACCTGGAGAAGGTACAG+GGG | 0.738308 | 1.2:+8717458 | MS.gene060927:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGTATGATTAAAATAAA+AGG | - | chr1.2:8717719-8717738 | None:intergenic | 10.0% |
| !! | TTAAGCAAAAATATAAATAA+CGG | - | chr1.2:8718028-8718047 | None:intergenic | 10.0% |
| !!! | TATTTTAATCATACATTATA+GGG | + | chr1.2:8717721-8717740 | MS.gene060927:intron | 10.0% |
| !!! | TTATTTTAATCATACATTAT+AGG | + | chr1.2:8717720-8717739 | MS.gene060927:intron | 10.0% |
| !! | AAATTAGTAATTAATCCAAA+AGG | - | chr1.2:8715988-8716007 | None:intergenic | 15.0% |
| !! | AAAAAGAACAATGAGATAAA+TGG | - | chr1.2:8715890-8715909 | None:intergenic | 20.0% |
| !! | AAAAAGAATATACCATGAAA+TGG | - | chr1.2:8715833-8715852 | None:intergenic | 20.0% |
| !! | AACTAAAGCAAATTAATAAC+TGG | + | chr1.2:8718112-8718131 | MS.gene060927:CDS | 20.0% |
| !! | AGTTGAACAGAATTAAAATT+TGG | + | chr1.2:8716110-8716129 | MS.gene060927:intron | 20.0% |
| !! | GGAATAGTTATTAAAAAGAA+GGG | - | chr1.2:8717682-8717701 | None:intergenic | 20.0% |
| !! | TTGAATTTATGAGAAATCAT+GGG | + | chr1.2:8716287-8716306 | MS.gene060927:intron | 20.0% |
| !! | TTTCTTGTAACAAAAATTTG+TGG | - | chr1.2:8715933-8715952 | None:intergenic | 20.0% |
| !! | TTTGAATTTATGAGAAATCA+TGG | + | chr1.2:8716286-8716305 | MS.gene060927:intron | 20.0% |
| !!! | AATAACAATTTTTCTGTTTG+TGG | + | chr1.2:8715955-8715974 | MS.gene060927:intron | 20.0% |
| !!! | ATCATTTTTACTTGTCAAAT+AGG | - | chr1.2:8717409-8717428 | None:intergenic | 20.0% |
| !!! | ATGAAAATGCAATTTTGAAT+TGG | + | chr1.2:8716186-8716205 | MS.gene060927:intron | 20.0% |
| !!! | ATTAAAATTTGGTAGTTTTG+TGG | + | chr1.2:8716121-8716140 | MS.gene060927:intron | 20.0% |
| !!! | CTAGATTTTATTACCAAATA+AGG | + | chr1.2:8716539-8716558 | MS.gene060927:intron | 20.0% |
| !!! | CTTATTATTACAGTTGTTTT+TGG | + | chr1.2:8716035-8716054 | MS.gene060927:intron | 20.0% |
| !!! | TTGTGATTTCAATGTATTTT+TGG | + | chr1.2:8716224-8716243 | MS.gene060927:intron | 20.0% |
| ! | AAAAGTGATTACAGAAAATG+TGG | - | chr1.2:8716952-8716971 | None:intergenic | 25.0% |
| ! | ATAAATGGCAAAGAAATTTG+AGG | - | chr1.2:8715875-8715894 | None:intergenic | 25.0% |
| ! | ATGGAATCATGTGATAAATA+TGG | + | chr1.2:8716064-8716083 | MS.gene060927:intron | 25.0% |
| ! | GGGAATAGTTATTAAAAAGA+AGG | - | chr1.2:8717683-8717702 | None:intergenic | 25.0% |
| ! | GTTTATTCAAAAACTGGAAA+GGG | - | chr1.2:8716433-8716452 | None:intergenic | 25.0% |
| ! | TAATCAAGGGAACATAATAT+AGG | - | chr1.2:8716977-8716996 | None:intergenic | 25.0% |
| ! | TATATAGTTAAACGTACTGT+TGG | - | chr1.2:8717871-8717890 | None:intergenic | 25.0% |
| ! | TCATGTGATAAATATGGAAT+TGG | + | chr1.2:8716070-8716089 | MS.gene060927:intron | 25.0% |
| ! | TCCAATCAAACCTAAAAAAT+GGG | - | chr1.2:8717345-8717364 | None:intergenic | 25.0% |
| ! | TGAATTTATGAGAAATCATG+GGG | + | chr1.2:8716288-8716307 | MS.gene060927:intron | 25.0% |
| ! | TGTTTATTCAAAAACTGGAA+AGG | - | chr1.2:8716434-8716453 | None:intergenic | 25.0% |
| !! | AAATGCAATTTTGAATTGGA+TGG | + | chr1.2:8716190-8716209 | MS.gene060927:intron | 25.0% |
| !! | AATTTTGAATTGGATGGTTT+TGG | + | chr1.2:8716196-8716215 | MS.gene060927:intron | 25.0% |
| !! | ATAACTGGTTTATCAATCAA+AGG | + | chr1.2:8718127-8718146 | MS.gene060927:CDS | 25.0% |
| !! | ATGATGGAATGAAAATAACT+TGG | + | chr1.2:8716925-8716944 | MS.gene060927:intron | 25.0% |
| !! | ATTTTGAATTGGATGGTTTT+GGG | + | chr1.2:8716197-8716216 | MS.gene060927:intron | 25.0% |
| !! | TAATGTATTATGTGCTTTTC+AGG | + | chr1.2:8718050-8718069 | MS.gene060927:intron | 25.0% |
| !! | TTTAAAACAGAACTAAGAGA+AGG | - | chr1.2:8716491-8716510 | None:intergenic | 25.0% |
| !! | TTTAGTAATTCTGTCTGTTT+TGG | + | chr1.2:8717007-8717026 | MS.gene060927:intron | 25.0% |
| !! | TTTTATTACCAAATAAGGAG+CGG | + | chr1.2:8716544-8716563 | MS.gene060927:intron | 25.0% |
| !!! | AATTGGTTTGTATCTTATGT+TGG | + | chr1.2:8716087-8716106 | MS.gene060927:intron | 25.0% |
| !!! | ATGAGATTTTTTTTGTACAG+AGG | + | chr1.2:8716390-8716409 | MS.gene060927:intron | 25.0% |
| !!! | CAGTTGTTTTTGGATTTTTA+TGG | + | chr1.2:8716045-8716064 | MS.gene060927:intron | 25.0% |
| !!! | GTGTTTGAAGAAAGTATTAA+AGG | + | chr1.2:8717099-8717118 | MS.gene060927:intron | 25.0% |
| !!! | GTTAATTACATTTTAGTCAC+TGG | - | chr1.2:8716624-8716643 | None:intergenic | 25.0% |
| !!! | TGAGATTTTTTTTGTACAGA+GGG | + | chr1.2:8716391-8716410 | MS.gene060927:intron | 25.0% |
| AAAAGCAGCAACATAATCAA+GGG | - | chr1.2:8716990-8717009 | None:intergenic | 30.0% | |
| AAATATACTTCAGCCTTCAT+CGG | - | chr1.2:8717381-8717400 | None:intergenic | 30.0% | |
| AGCATGAATTGAAACATGTA+AGG | + | chr1.2:8717634-8717653 | MS.gene060927:intron | 30.0% | |
| ATAAAAGGAGATGAATCATG+TGG | - | chr1.2:8717704-8717723 | None:intergenic | 30.0% | |
| ATGTTAGCTAATTGAACAGT+TGG | - | chr1.2:8717176-8717195 | None:intergenic | 30.0% | |
| GAATTTATGAGAAATCATGG+GGG | + | chr1.2:8716289-8716308 | MS.gene060927:intron | 30.0% | |
| GAGTGTGTTTATTCAAAAAC+TGG | - | chr1.2:8716439-8716458 | None:intergenic | 30.0% | |
| GCATGAATTGAAACATGTAA+GGG | + | chr1.2:8717635-8717654 | MS.gene060927:intron | 30.0% | |
| GTCCAATCAAACCTAAAAAA+TGG | - | chr1.2:8717346-8717365 | None:intergenic | 30.0% | |
| TAAAAGCAGCAACATAATCA+AGG | - | chr1.2:8716991-8717010 | None:intergenic | 30.0% | |
| TAAAAGGAGATGAATCATGT+GGG | - | chr1.2:8717703-8717722 | None:intergenic | 30.0% | |
| TCATACATTATAGGGTTACA+AGG | + | chr1.2:8717729-8717748 | MS.gene060927:intron | 30.0% | |
| TGTTAGCTAATTGAACAGTT+GGG | - | chr1.2:8717175-8717194 | None:intergenic | 30.0% | |
| TTATACCAACAGAGAATGAA+AGG | + | chr1.2:8717580-8717599 | MS.gene060927:CDS | 30.0% | |
| TTGTTGCAATTGTTCTTTGA+AGG | - | chr1.2:8716767-8716786 | None:intergenic | 30.0% | |
| ! | GTTTGATTGGACCTTTTTAA+AGG | + | chr1.2:8717354-8717373 | MS.gene060927:intron | 30.0% |
| ! | TGACCTACTTTGAAAATCTT+AGG | + | chr1.2:8717290-8717309 | MS.gene060927:intron | 30.0% |
| !! | TAAAGCTTTGTTGCATATGA+TGG | + | chr1.2:8716909-8716928 | MS.gene060927:intron | 30.0% |
| !!! | AATTTGGTAGTTTTGTGGTA+TGG | + | chr1.2:8716126-8716145 | MS.gene060927:intron | 30.0% |
| !!! | GACATTTTTTTGTACCTGTT+AGG | - | chr1.2:8716855-8716874 | None:intergenic | 30.0% |
| !!! | GAGATTTTTTTTGTACAGAG+GGG | + | chr1.2:8716392-8716411 | MS.gene060927:intron | 30.0% |
| !!! | GGTGTACTTTTGATTTAGAA+TGG | + | chr1.2:8716565-8716584 | MS.gene060927:intron | 30.0% |
| ATCTTCCAAGAATACAAGCA+GGG | + | chr1.2:8717228-8717247 | MS.gene060927:intron | 35.0% | |
| ATGGGCCTATAAGAGATAAT+AGG | - | chr1.2:8717327-8717346 | None:intergenic | 35.0% | |
| CAAAGAACTTGACCATTTCA+TGG | + | chr1.2:8715818-8715837 | MS.gene060927:CDS | 35.0% | |
| CATTCTCTGTTGGTATAAGA+GGG | - | chr1.2:8717578-8717597 | None:intergenic | 35.0% | |
| GAAAATTGTGGACATAAGAG+AGG | + | chr1.2:8717753-8717772 | MS.gene060927:CDS | 35.0% | |
| GACAACAACTGTTCATACAA+CGG | - | chr1.2:8715675-8715694 | None:intergenic | 35.0% | |
| GGTTTATCAATCAAAGGAAG+AGG | + | chr1.2:8718133-8718152 | MS.gene060927:CDS | 35.0% | |
| GTCTCTTGTAAGACTATACA+AGG | + | chr1.2:8717029-8717048 | MS.gene060927:intron | 35.0% | |
| GTTAAACGTACTGTTGGATA+TGG | - | chr1.2:8717865-8717884 | None:intergenic | 35.0% | |
| GTTAGCTAATTGAACAGTTG+GGG | - | chr1.2:8717174-8717193 | None:intergenic | 35.0% | |
| GTTGTATGAACAGTTGTTGT+CGG | + | chr1.2:8715674-8715693 | MS.gene060927:CDS | 35.0% | |
| TCAATCAAAGGAAGAGGAAT+TGG | + | chr1.2:8718139-8718158 | MS.gene060927:CDS | 35.0% | |
| TCATTCTCTGTTGGTATAAG+AGG | - | chr1.2:8717579-8717598 | None:intergenic | 35.0% | |
| ! | AGGCCTAAGATTTTCAAAGT+AGG | - | chr1.2:8717296-8717315 | None:intergenic | 35.0% |
| ! | TTTTGGATGATTGCTCAAGT+GGG | + | chr1.2:8716241-8716260 | MS.gene060927:intron | 35.0% |
| ! | TTTTTGGATGATTGCTCAAG+TGG | + | chr1.2:8716240-8716259 | MS.gene060927:intron | 35.0% |
| !! | TGTATTATGTGCTTTTCAGG+AGG | + | chr1.2:8718053-8718072 | MS.gene060927:intron | 35.0% |
| !!! | CTCTTATAGGCCCATTTTTT+AGG | + | chr1.2:8717332-8717351 | MS.gene060927:intron | 35.0% |
| !!! | GCCCATTTTTTAGGTTTGAT+TGG | + | chr1.2:8717341-8717360 | MS.gene060927:intron | 35.0% |
| !!! | GTTTGTGGTTTTAGTCCTTT+TGG | + | chr1.2:8715970-8715989 | MS.gene060927:intron | 35.0% |
| AAAGTACACCGCTCCTTATT+TGG | - | chr1.2:8716555-8716574 | None:intergenic | 40.0% | |
| AGAGAATGAAAGGTCCCTAA+TGG | + | chr1.2:8717590-8717609 | MS.gene060927:CDS | 40.0% | |
| ATGCACATTAGTCCATGTGT+TGG | + | chr1.2:8717976-8717995 | MS.gene060927:intron | 40.0% | |
| CAATCCTTACAAAGCCTAAC+AGG | + | chr1.2:8716838-8716857 | MS.gene060927:CDS | 40.0% | |
| CATCTTCCAAGAATACAAGC+AGG | + | chr1.2:8717227-8717246 | MS.gene060927:intron | 40.0% | |
| GAATGGATACTTGATGTGCA+GGG | + | chr1.2:8716263-8716282 | MS.gene060927:intron | 40.0% | |
| GGGTTACAAGGAGAAAATTG+TGG | + | chr1.2:8717741-8717760 | MS.gene060927:intron | 40.0% | |
| TCTTCCAAGAATACAAGCAG+GGG | + | chr1.2:8717229-8717248 | MS.gene060927:intron | 40.0% | |
| TCTTGAAGAGCAAACGCAAA+AGG | + | chr1.2:8718187-8718206 | MS.gene060927:CDS | 40.0% | |
| TGACACAACTTCTGTCCTTA+AGG | + | chr1.2:8717813-8717832 | MS.gene060927:CDS | 40.0% | |
| TTCAAGACAGTAGAGGTTGA+AGG | - | chr1.2:8718174-8718193 | None:intergenic | 40.0% | |
| TTCAGGAGGAAGATAAAGCA+AGG | + | chr1.2:8718067-8718086 | MS.gene060927:intron | 40.0% | |
| TTGCAAAGTTGCAATGCATG+TGG | - | chr1.2:8717055-8717074 | None:intergenic | 40.0% | |
| TTGTCTTACACGCTCCATTA+GGG | - | chr1.2:8717607-8717626 | None:intergenic | 40.0% | |
| TTTATGAGAAATCATGGGGG+TGG | + | chr1.2:8716292-8716311 | MS.gene060927:intron | 40.0% | |
| TTTGCTCTTCAAGACAGTAG+AGG | - | chr1.2:8718181-8718200 | None:intergenic | 40.0% | |
| ! | ACACATGGACTAATGTGCAT+TGG | - | chr1.2:8717976-8717995 | None:intergenic | 40.0% |
| ! | CACATGGACTAATGTGCATT+GGG | - | chr1.2:8717975-8717994 | None:intergenic | 40.0% |
| ! | CCTTCATCGGACCTTTAAAA+AGG | - | chr1.2:8717368-8717387 | None:intergenic | 40.0% |
| ! | GCTGGCCTATTATCTCTTAT+AGG | + | chr1.2:8717319-8717338 | MS.gene060927:intron | 40.0% |
| ! | TGTACCTGTTAGGCTTTGTA+AGG | - | chr1.2:8716845-8716864 | None:intergenic | 40.0% |
| !! | CCTTTTTAAAGGTCCGATGA+AGG | + | chr1.2:8717365-8717384 | MS.gene060927:intron | 40.0% |
| !!! | CTGTTCGATGGTAGTTTTGA+TGG | + | chr1.2:8717528-8717547 | MS.gene060927:CDS | 40.0% |
| !!! | TTCGATGGTAGTTTTGATGG+CGG | + | chr1.2:8717531-8717550 | MS.gene060927:CDS | 40.0% |
| AGAGATAATAGGCCAGCTTC+AGG | - | chr1.2:8717316-8717335 | None:intergenic | 45.0% | |
| AGGGACCTTTCATTCTCTGT+TGG | - | chr1.2:8717588-8717607 | None:intergenic | 45.0% | |
| AGTGACGCAAATCTGTTCGA+TGG | + | chr1.2:8717516-8717535 | MS.gene060927:CDS | 45.0% | |
| CAACTTCTGTCCTTAAGGCT+TGG | + | chr1.2:8717818-8717837 | MS.gene060927:CDS | 45.0% | |
| CCATGCAATGGAAGCTGTAA+TGG | + | chr1.2:8716798-8716817 | MS.gene060927:CDS | 45.0% | |
| CCATTACAGCTTCCATTGCA+TGG | - | chr1.2:8716801-8716820 | None:intergenic | 45.0% | |
| CTTGTCTTACACGCTCCATT+AGG | - | chr1.2:8717608-8717627 | None:intergenic | 45.0% | |
| CTTTCTGTGATGCCAACACA+TGG | - | chr1.2:8717991-8718010 | None:intergenic | 45.0% | |
| GAAAATCTTAGGCCTGAAGC+TGG | + | chr1.2:8717301-8717320 | MS.gene060927:intron | 45.0% | |
| GATGATTGCTCAAGTGGGAA+TGG | + | chr1.2:8716246-8716265 | MS.gene060927:intron | 45.0% | |
| GCTAACTGAGCATCAATCCT+CGG | - | chr1.2:8715744-8715763 | None:intergenic | 45.0% | |
| GGAATGGATACTTGATGTGC+AGG | + | chr1.2:8716262-8716281 | MS.gene060927:intron | 45.0% | |
| GGAGGAAGATAAAGCAAGGT+TGG | + | chr1.2:8718071-8718090 | MS.gene060927:intron | 45.0% | |
| GTCTGACGATGAAGATGAAC+AGG | + | chr1.2:8717488-8717507 | MS.gene060927:CDS | 45.0% | |
| GTGTGACTGCAACATCAAGA+AGG | - | chr1.2:8716725-8716744 | None:intergenic | 45.0% | |
| GTTAGCACAGTCTCAGAATG+TGG | + | chr1.2:8715758-8715777 | MS.gene060927:CDS | 45.0% | |
| TACTGTTGGATATGGCCACT+TGG | - | chr1.2:8717857-8717876 | None:intergenic | 45.0% | |
| TTTCTCATCGCTGCATGAAC+AGG | + | chr1.2:8717432-8717451 | MS.gene060927:intron | 45.0% | |
| ! | AAATACTCTGCGTTTGGTGG+TGG | + | chr1.2:8715786-8715805 | MS.gene060927:CDS | 45.0% |
| ! | ACCACCAAACGCAGAGTATT+TGG | - | chr1.2:8715787-8715806 | None:intergenic | 45.0% |
| ! | AGACTAGACAAGGCTTTGTG+AGG | + | chr1.2:8717259-8717278 | MS.gene060927:intron | 45.0% |
| ! | ATTTTACGCAAGAGACGAGC+TGG | + | chr1.2:8717778-8717797 | MS.gene060927:CDS | 45.0% |
| ! | TGGAAGCTGTAATGGCTTGT+TGG | + | chr1.2:8716806-8716825 | MS.gene060927:CDS | 45.0% |
| ! | TTTCACCTGGAGAAGGTACA+GGG | + | chr1.2:8717457-8717476 | MS.gene060927:CDS | 45.0% |
| ! | TTTTACGCAAGAGACGAGCT+GGG | + | chr1.2:8717779-8717798 | MS.gene060927:CDS | 45.0% |
| !! | AGATAAAGCAAGGTTGGTGC+AGG | + | chr1.2:8718077-8718096 | MS.gene060927:CDS | 45.0% |
| !! | GGAAGCTGTAATGGCTTGTT+GGG | + | chr1.2:8716807-8716826 | MS.gene060927:CDS | 45.0% |
| ACAGGAGTTTCACCTGGAGA+AGG | + | chr1.2:8717450-8717469 | MS.gene060927:intron | 50.0% | |
| ACAGTTGTTGTCGGCACATG+TGG | + | chr1.2:8715683-8715702 | MS.gene060927:CDS | 50.0% | |
| AGCACAGTCTCAGAATGTGG+TGG | + | chr1.2:8715761-8715780 | MS.gene060927:CDS | 50.0% | |
| AGGACAGAAGTTGTGTCACC+AGG | - | chr1.2:8717811-8717830 | None:intergenic | 50.0% | |
| ATCCTCGGTAACTGATCCAC+CGG | - | chr1.2:8715729-8715748 | None:intergenic | 50.0% | |
| ATGAGAAATCATGGGGGTGG+AGG | + | chr1.2:8716295-8716314 | MS.gene060927:intron | 50.0% | |
| CTTCTGTCCTTAAGGCTTGG+TGG | + | chr1.2:8717821-8717840 | MS.gene060927:CDS | 50.0% | |
| GCATGAACAGGAGTTTCACC+TGG | + | chr1.2:8717444-8717463 | MS.gene060927:intron | 50.0% | |
| GCCAAATACTCTGCGTTTGG+TGG | + | chr1.2:8715783-8715802 | MS.gene060927:CDS | 50.0% | |
| GGGCAGGATTAGACTAGACA+AGG | + | chr1.2:8717249-8717268 | MS.gene060927:intron | 50.0% | |
| GGTGCGGATAACATGGGATT+TGG | + | chr1.2:8717552-8717571 | MS.gene060927:CDS | 50.0% | |
| GGTGGCAATCACATTCCAAG+TGG | + | chr1.2:8717839-8717858 | MS.gene060927:CDS | 50.0% | |
| GTGATTGCCACCAAGCCTTA+AGG | - | chr1.2:8717831-8717850 | None:intergenic | 50.0% | |
| GTGGCCAAATACTCTGCGTT+TGG | + | chr1.2:8715780-8715799 | MS.gene060927:CDS | 50.0% | |
| GTGTTTGAGGATAGCAACGC+CGG | + | chr1.2:8715707-8715726 | MS.gene060927:CDS | 50.0% | |
| TGAGAAATCATGGGGGTGGA+GGG | + | chr1.2:8716296-8716315 | MS.gene060927:intron | 50.0% | |
| ! | GTTTCACCTGGAGAAGGTAC+AGG | + | chr1.2:8717456-8717475 | MS.gene060927:CDS | 50.0% |
| ! | TTCACCTGGAGAAGGTACAG+GGG | + | chr1.2:8717458-8717477 | MS.gene060927:CDS | 50.0% |
| !!! | TGGTAGTTTTGATGGCGGTG+CGG | + | chr1.2:8717536-8717555 | MS.gene060927:CDS | 50.0% |
| ACATGTCCGCGTCCATGCAA+TGG | + | chr1.2:8716786-8716805 | MS.gene060927:CDS | 55.0% | |
| AGACGAGCTGGGAAACTTCC+TGG | + | chr1.2:8717790-8717809 | MS.gene060927:CDS | 55.0% | |
| CAGCTTCCATTGCATGGACG+CGG | - | chr1.2:8716795-8716814 | None:intergenic | 55.0% | |
| CCAAGAATACAAGCAGGGGC+AGG | + | chr1.2:8717233-8717252 | MS.gene060927:intron | 55.0% | |
| CCTGCCCCTGCTTGTATTCT+TGG | - | chr1.2:8717236-8717255 | None:intergenic | 55.0% | |
| TTTGAGGATAGCAACGCCGG+TGG | + | chr1.2:8715710-8715729 | MS.gene060927:CDS | 55.0% | |
| ! | GATGGCGGTGCGGATAACAT+GGG | + | chr1.2:8717546-8717565 | MS.gene060927:CDS | 55.0% |
| !! | GCAAGGTTGGTGCAGGAAAC+TGG | + | chr1.2:8718084-8718103 | MS.gene060927:CDS | 55.0% |
| !! | TGATGGCGGTGCGGATAACA+TGG | + | chr1.2:8717545-8717564 | MS.gene060927:CDS | 55.0% |
| CGGCACATGTGGCGTGTTTG+AGG | + | chr1.2:8715694-8715713 | MS.gene060927:CDS | 60.0% | |
| GTTGCCCCTGTACCTTCTCC+AGG | - | chr1.2:8717465-8717484 | None:intergenic | 60.0% | |
| CGCCGGTGGATCAGTTACCG+AGG | + | chr1.2:8715724-8715743 | MS.gene060927:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 8715663 | 8718221 | 8715663 | ID=MS.gene060927 |
| chr1.2 | mRNA | 8715663 | 8718221 | 8715663 | ID=MS.gene060927.t1;Parent=MS.gene060927 |
| chr1.2 | exon | 8715663 | 8715839 | 8715663 | ID=MS.gene060927.t1.exon1;Parent=MS.gene060927.t1 |
| chr1.2 | CDS | 8715663 | 8715839 | 8715663 | ID=cds.MS.gene060927.t1;Parent=MS.gene060927.t1 |
| chr1.2 | exon | 8716739 | 8716859 | 8716739 | ID=MS.gene060927.t1.exon2;Parent=MS.gene060927.t1 |
| chr1.2 | CDS | 8716739 | 8716859 | 8716739 | ID=cds.MS.gene060927.t1;Parent=MS.gene060927.t1 |
| chr1.2 | exon | 8717454 | 8717650 | 8717454 | ID=MS.gene060927.t1.exon3;Parent=MS.gene060927.t1 |
| chr1.2 | CDS | 8717454 | 8717650 | 8717454 | ID=cds.MS.gene060927.t1;Parent=MS.gene060927.t1 |
| chr1.2 | exon | 8717742 | 8717873 | 8717742 | ID=MS.gene060927.t1.exon4;Parent=MS.gene060927.t1 |
| chr1.2 | CDS | 8717742 | 8717873 | 8717742 | ID=cds.MS.gene060927.t1;Parent=MS.gene060927.t1 |
| chr1.2 | exon | 8718072 | 8718221 | 8718072 | ID=MS.gene060927.t1.exon5;Parent=MS.gene060927.t1 |
| chr1.2 | CDS | 8718072 | 8718221 | 8718072 | ID=cds.MS.gene060927.t1;Parent=MS.gene060927.t1 |
| Gene Sequence |
| Protein sequence |
