Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33207.t1 | XP_003588760.1 | 92.4 | 276 | 19 | 1 | 1 | 276 | 1 | 274 | 2.80E-134 | 488 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33207.t1 | O48781 | 55.6 | 277 | 118 | 2 | 1 | 276 | 1 | 273 | 5.7e-75 | 282.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33207.t1 | G7I700 | 92.4 | 276 | 19 | 1 | 1 | 276 | 1 | 274 | 2.0e-134 | 488.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene33207 | -0.809232 | 2.09E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene33207 | 0.81528 | 1.00E-51 | -1.69E-46 |
| MS.gene052493 | MS.gene33207 | 0.803212 | 3.88E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene33207 | 0.820959 | 5.21E-53 | -1.69E-46 |
| MS.gene055864 | MS.gene33207 | 0.810957 | 8.90E-51 | -1.69E-46 |
| MS.gene05897 | MS.gene33207 | 0.801447 | 8.97E-49 | -1.69E-46 |
| MS.gene059952 | MS.gene33207 | 0.816417 | 5.59E-52 | -1.69E-46 |
| MS.gene060259 | MS.gene33207 | 0.807766 | 4.31E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33207.t1 | MTR_1g012440 | 96.739 | 276 | 7 | 1 | 1 | 276 | 1 | 274 | 0.0 | 535 |
| MS.gene33207.t1 | MTR_3g107393 | 61.154 | 260 | 76 | 3 | 1 | 259 | 1 | 236 | 5.23e-100 | 293 |
| MS.gene33207.t1 | MTR_4g114550 | 57.762 | 277 | 110 | 2 | 1 | 275 | 1 | 272 | 1.36e-96 | 285 |
| MS.gene33207.t1 | MTR_4g027390 | 43.772 | 281 | 105 | 6 | 1 | 268 | 1 | 241 | 2.47e-64 | 202 |
| MS.gene33207.t1 | MTR_8g077020 | 38.163 | 283 | 151 | 4 | 1 | 270 | 1 | 272 | 1.43e-53 | 176 |
| MS.gene33207.t1 | MTR_0262s0060 | 39.726 | 219 | 87 | 6 | 1 | 206 | 1 | 187 | 4.95e-44 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33207.t1 | AT2G26660 | 56.989 | 279 | 111 | 3 | 1 | 276 | 1 | 273 | 5.45e-95 | 281 |
| MS.gene33207.t1 | AT5G20150 | 56.877 | 269 | 84 | 4 | 1 | 269 | 1 | 237 | 7.97e-92 | 272 |
| MS.gene33207.t1 | AT5G15330 | 38.411 | 302 | 147 | 7 | 1 | 276 | 1 | 289 | 3.48e-57 | 186 |
| MS.gene33207.t1 | AT5G15330 | 38.411 | 302 | 147 | 7 | 1 | 276 | 70 | 358 | 1.23e-56 | 186 |
| MS.gene33207.t1 | AT2G45130 | 39.711 | 277 | 107 | 6 | 1 | 269 | 1 | 225 | 3.50e-55 | 178 |
Find 53 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAATGTTCTCCATATTT+TGG | 0.132016 | 1.2:-9194705 | None:intergenic |
| TTCAATACATCTTGGATAAA+AGG | 0.227691 | 1.2:-9194481 | None:intergenic |
| GTTGAAATTGAGAAATTTAA+TGG | 0.239620 | 1.2:+9192348 | MS.gene33207:CDS |
| TGGATCTCAGAAAGTTCTTT+TGG | 0.252029 | 1.2:-9194685 | None:intergenic |
| TTCTTCGAAACGGCGTCGTT+TGG | 0.281601 | 1.2:+9192260 | MS.gene33207:CDS |
| GAAGAAGAATCAATCTCTTT+AGG | 0.317856 | 1.2:-9192234 | None:intergenic |
| ACTTTCTGAGATCCAAAATA+TGG | 0.335458 | 1.2:+9194693 | MS.gene33207:CDS |
| CTTAGTTTCATTTGCAGTTG+TGG | 0.370514 | 1.2:-9194644 | None:intergenic |
| TTGCCCTAGAGACCCACTTT+TGG | 0.370556 | 1.2:-9194578 | None:intergenic |
| CCGGTAACGTTTGTTCGATC+TGG | 0.378382 | 1.2:-9192152 | None:intergenic |
| GACAGTAGGGAGGGAAATAG+TGG | 0.390036 | 1.2:+9193664 | MS.gene33207:CDS |
| CAGAAGCAACGATGAAGTTC+TGG | 0.393504 | 1.2:+9192115 | None:intergenic |
| CTGGGCCAAGAGTTCTGATA+TGG | 0.418354 | 1.2:+9193634 | MS.gene33207:CDS |
| CCAGATCGAACAAACGTTAC+CGG | 0.425418 | 1.2:+9192152 | MS.gene33207:CDS |
| AAGAAGAATATGTTATCAAA+TGG | 0.435300 | 1.2:+9192388 | MS.gene33207:CDS |
| AATTGCAAGACAAAGTTGCC+TGG | 0.440049 | 1.2:+9193615 | MS.gene33207:CDS |
| TGGATACTCTGAAAGAGATC+AGG | 0.441187 | 1.2:+9194749 | MS.gene33207:CDS |
| TCCTCTGCACAGTGAGACTT+TGG | 0.441395 | 1.2:+9194807 | MS.gene33207:CDS |
| CACAACTGCAAATGAAACTA+AGG | 0.463681 | 1.2:+9194645 | MS.gene33207:CDS |
| TTCCCCAAAAGTGGGTCTCT+AGG | 0.475364 | 1.2:+9194574 | MS.gene33207:CDS |
| GAAACGGCGTCGTTTGGATG+AGG | 0.475372 | 1.2:+9192266 | MS.gene33207:CDS |
| TGATAAGTTTCTTTCTTACA+AGG | 0.478308 | 1.2:+9192182 | MS.gene33207:CDS |
| CAACTCCATATCAGAACTCT+TGG | 0.480256 | 1.2:-9193639 | None:intergenic |
| AAGAAATATGATAAGCGAAC+CGG | 0.485081 | 1.2:+9194442 | MS.gene33207:CDS |
| ATGGCTGGTTCAATACATCT+TGG | 0.493443 | 1.2:-9194489 | None:intergenic |
| TCCCCAAAAGTGGGTCTCTA+GGG | 0.504729 | 1.2:+9194575 | MS.gene33207:CDS |
| GGAGTTGATGACAGTAGGGA+GGG | 0.527766 | 1.2:+9193655 | MS.gene33207:CDS |
| AGCGAACCGGTGCACTACTT+CGG | 0.531250 | 1.2:+9194455 | MS.gene33207:CDS |
| TCGAACAAACGTTACCGGAT+TGG | 0.531970 | 1.2:+9192157 | MS.gene33207:CDS |
| GCACAGTGAGACTTTGGTAG+AGG | 0.539946 | 1.2:+9194813 | MS.gene33207:CDS |
| AGAAACTTATCACGCCAATC+CGG | 0.542654 | 1.2:-9192171 | None:intergenic |
| CAAACTAACTACATCAGCAC+TGG | 0.554658 | 1.2:+9194729 | MS.gene33207:CDS |
| GATATGGAGTTGATGACAGT+AGG | 0.558831 | 1.2:+9193650 | MS.gene33207:CDS |
| AGAATATGTTATCAAATGGA+AGG | 0.560145 | 1.2:+9192392 | MS.gene33207:CDS |
| TGAAGGAGAGGTTACGAAAG+AGG | 0.561251 | 1.2:+9192299 | MS.gene33207:CDS |
| GGATACTCTGAAAGAGATCA+GGG | 0.567654 | 1.2:+9194750 | MS.gene33207:CDS |
| CATATCAGAACTCTTGGCCC+AGG | 0.567662 | 1.2:-9193633 | None:intergenic |
| GATGAGGATGGTGGTGCTGA+AGG | 0.568091 | 1.2:+9192282 | MS.gene33207:CDS |
| TGGAGTTGATGACAGTAGGG+AGG | 0.576482 | 1.2:+9193654 | MS.gene33207:CDS |
| ATTGCAAGACAAAGTTGCCT+GGG | 0.577637 | 1.2:+9193616 | MS.gene33207:CDS |
| GCAATCCTTGTCAACTAGTG+AGG | 0.598101 | 1.2:+9194597 | MS.gene33207:CDS |
| ATATGGAGTTGATGACAGTA+GGG | 0.604313 | 1.2:+9193651 | MS.gene33207:CDS |
| AAAGTCTCACTGTGCAGAGG+AGG | 0.607575 | 1.2:-9194805 | None:intergenic |
| CGGCGTCGTTTGGATGAGGA+TGG | 0.613998 | 1.2:+9192270 | MS.gene33207:CDS |
| ACCAAAGTCTCACTGTGCAG+AGG | 0.620459 | 1.2:-9194808 | None:intergenic |
| AGGTAACCGAAGTAGTGCAC+CGG | 0.636993 | 1.2:-9194461 | None:intergenic |
| TGTGCTTAACAAGCTTGTGA+AGG | 0.649462 | 1.2:+9194525 | MS.gene33207:CDS |
| TATAGTGCACTTAACTACAC+AGG | 0.649872 | 1.2:+9193719 | MS.gene33207:CDS |
| CGTCGTTTGGATGAGGATGG+TGG | 0.657509 | 1.2:+9192273 | MS.gene33207:CDS |
| GGATGGTGGTGCTGAAGGAG+AGG | 0.662335 | 1.2:+9192287 | MS.gene33207:CDS |
| ACTCTGAAAGAGATCAGGGG+TGG | 0.668669 | 1.2:+9194754 | MS.gene33207:CDS |
| CAAGCTTGTGAAGGAGTGTG+AGG | 0.691985 | 1.2:+9194534 | MS.gene33207:CDS |
| GATACTCTGAAAGAGATCAG+GGG | 0.742895 | 1.2:+9194751 | MS.gene33207:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTTGTTGTAATA+TGG | + | chr1.2:9192454-9192473 | MS.gene33207:intron | 10.0% |
| !! | TTCTCATATTAAAAATGATA+GGG | - | chr1.2:9193922-9193941 | None:intergenic | 15.0% |
| !!! | TATACTTTTTTTTTACTAGT+AGG | - | chr1.2:9193327-9193346 | None:intergenic | 15.0% |
| !!! | TTTTTAACTTTAATCGATTA+TGG | + | chr1.2:9192419-9192438 | MS.gene33207:intron | 15.0% |
| !! | AAGAAGAATATGTTATCAAA+TGG | + | chr1.2:9192388-9192407 | MS.gene33207:CDS | 20.0% |
| !! | ATTTGACAAAACTATAATCT+TGG | - | chr1.2:9192535-9192554 | None:intergenic | 20.0% |
| !! | GTTCTCATATTAAAAATGAT+AGG | - | chr1.2:9193923-9193942 | None:intergenic | 20.0% |
| !! | GTTGAAATTGAGAAATTTAA+TGG | + | chr1.2:9192348-9192367 | MS.gene33207:CDS | 20.0% |
| !! | TAAACACAATATAATCAGAT+AGG | + | chr1.2:9194289-9194308 | MS.gene33207:intron | 20.0% |
| !!! | ATCCAATGTATCATTATTTT+TGG | + | chr1.2:9192763-9192782 | MS.gene33207:intron | 20.0% |
| ! | AAGCATCATAGATTATGAAA+TGG | - | chr1.2:9192738-9192757 | None:intergenic | 25.0% |
| ! | ACAATTTAGATCAGAATTGT+CGG | + | chr1.2:9192690-9192709 | MS.gene33207:intron | 25.0% |
| ! | ACCTTAAATATCAATGAATG+TGG | + | chr1.2:9192926-9192945 | MS.gene33207:intron | 25.0% |
| ! | AGAATATGTTATCAAATGGA+AGG | + | chr1.2:9192392-9192411 | MS.gene33207:CDS | 25.0% |
| ! | AGAATGTATGAATCTTAACA+TGG | + | chr1.2:9192969-9192988 | MS.gene33207:intron | 25.0% |
| ! | ATAATCAGATAGGAAAACTA+GGG | + | chr1.2:9194299-9194318 | MS.gene33207:intron | 25.0% |
| ! | CAAAAACTTCAACAAAATCA+TGG | - | chr1.2:9192821-9192840 | None:intergenic | 25.0% |
| ! | CTCAAATTATTAACATGTGT+CGG | - | chr1.2:9192624-9192643 | None:intergenic | 25.0% |
| ! | CTCCAAAAATAATGATACAT+TGG | - | chr1.2:9192768-9192787 | None:intergenic | 25.0% |
| ! | GAATGTATGAATCTTAACAT+GGG | + | chr1.2:9192970-9192989 | MS.gene33207:intron | 25.0% |
| ! | TACAATATACTTTGCAAATG+AGG | - | chr1.2:9193840-9193859 | None:intergenic | 25.0% |
| ! | TATAATCAGATAGGAAAACT+AGG | + | chr1.2:9194298-9194317 | MS.gene33207:intron | 25.0% |
| ! | TCCACATTCATTGATATTTA+AGG | - | chr1.2:9192930-9192949 | None:intergenic | 25.0% |
| ! | TGATAAGTTTCTTTCTTACA+AGG | + | chr1.2:9192182-9192201 | MS.gene33207:CDS | 25.0% |
| ! | TTCAATACATCTTGGATAAA+AGG | - | chr1.2:9194484-9194503 | None:intergenic | 25.0% |
| !! | AAGAGGTTAATGATTTTCTT+AGG | + | chr1.2:9192316-9192335 | MS.gene33207:CDS | 25.0% |
| !! | AATACGTATAATTTTACCAC+TGG | + | chr1.2:9193237-9193256 | MS.gene33207:intron | 25.0% |
| !! | ACCATATTTTGCAAATAAGA+TGG | + | chr1.2:9194134-9194153 | MS.gene33207:intron | 25.0% |
| !! | ATACGTATAATTTTACCACT+GGG | + | chr1.2:9193238-9193257 | MS.gene33207:intron | 25.0% |
| !! | CATATATTGTAATTCTGGAA+AGG | + | chr1.2:9193043-9193062 | MS.gene33207:intron | 25.0% |
| !! | TGAAAATGTTCTCCATATTT+TGG | - | chr1.2:9194708-9194727 | None:intergenic | 25.0% |
| !!! | GTTTTAGGGGTATTAATTAA+TGG | + | chr1.2:9194023-9194042 | MS.gene33207:intron | 25.0% |
| !!! | TAATGATTTTCTTAGGTTGT+TGG | + | chr1.2:9192323-9192342 | MS.gene33207:CDS | 25.0% |
| AACTTATCCTCGAAGTAAAA+TGG | + | chr1.2:9193144-9193163 | MS.gene33207:intron | 30.0% | |
| AAGAAATATGATAAGCGAAC+CGG | + | chr1.2:9194442-9194461 | MS.gene33207:CDS | 30.0% | |
| AATGATAATTCAGTCCTTAG+AGG | - | chr1.2:9193966-9193985 | None:intergenic | 30.0% | |
| ACTCGGCTAAAATACATTTA+CGG | - | chr1.2:9193364-9193383 | None:intergenic | 30.0% | |
| ATGATTTCTTTGACTAGGTT+GGG | + | chr1.2:9194344-9194363 | MS.gene33207:intron | 30.0% | |
| CATCATAGGATAGTAACATA+TGG | + | chr1.2:9193792-9193811 | MS.gene33207:intron | 30.0% | |
| CTTCTAGTCATAAAATCACT+CGG | - | chr1.2:9193381-9193400 | None:intergenic | 30.0% | |
| GAAAGATGATTTCTTTGACT+AGG | + | chr1.2:9194339-9194358 | MS.gene33207:intron | 30.0% | |
| GAAGAAGAATCAATCTCTTT+AGG | - | chr1.2:9192237-9192256 | None:intergenic | 30.0% | |
| GTCAGCATATATTGTAATTC+TGG | + | chr1.2:9193038-9193057 | MS.gene33207:intron | 30.0% | |
| TCTTAGAAATAGAATACGCT+GGG | - | chr1.2:9193569-9193588 | None:intergenic | 30.0% | |
| TTACTATCCTATGATGCAAA+AGG | - | chr1.2:9193788-9193807 | None:intergenic | 30.0% | |
| TTCTTAGAAATAGAATACGC+TGG | - | chr1.2:9193570-9193589 | None:intergenic | 30.0% | |
| TTGAGTTTGAAGAAATCAAG+TGG | + | chr1.2:9192793-9192812 | MS.gene33207:intron | 30.0% | |
| ! | ACAAATTCCTTTTGCATCAT+AGG | + | chr1.2:9193778-9193797 | MS.gene33207:intron | 30.0% |
| ! | ATTCTTGTTTGTCAGTAGAT+GGG | + | chr1.2:9194244-9194263 | MS.gene33207:intron | 30.0% |
| ! | CTTGTCTGTGTTGTAAATTT+TGG | + | chr1.2:9193285-9193304 | MS.gene33207:intron | 30.0% |
| ! | GCAAATGAGTTACAGTTTTA+GGG | + | chr1.2:9194009-9194028 | MS.gene33207:intron | 30.0% |
| ! | GCCATCTTATTTGCAAAATA+TGG | - | chr1.2:9194138-9194157 | None:intergenic | 30.0% |
| ! | TAATAGTCCATTTTACTTCG+AGG | - | chr1.2:9193154-9193173 | None:intergenic | 30.0% |
| ! | TACGTATAATTTTACCACTG+GGG | + | chr1.2:9193239-9193258 | MS.gene33207:intron | 30.0% |
| ! | TAGCAATCTTTTCTGATCTT+GGG | + | chr1.2:9193091-9193110 | MS.gene33207:intron | 30.0% |
| ! | TATTCTTGTTTGTCAGTAGA+TGG | + | chr1.2:9194243-9194262 | MS.gene33207:intron | 30.0% |
| ! | TGAAGTTTTTGCTACAATCA+CGG | + | chr1.2:9192830-9192849 | MS.gene33207:intron | 30.0% |
| ! | TGCAAATGAGTTACAGTTTT+AGG | + | chr1.2:9194008-9194027 | MS.gene33207:intron | 30.0% |
| ! | TTAGCAATCTTTTCTGATCT+TGG | + | chr1.2:9193090-9193109 | MS.gene33207:intron | 30.0% |
| !! | ACTTTCTGAGATCCAAAATA+TGG | + | chr1.2:9194693-9194712 | MS.gene33207:CDS | 30.0% |
| !! | ATGCAGTTAGTGGATTAAAT+AGG | + | chr1.2:9192894-9192913 | MS.gene33207:intron | 30.0% |
| !! | CAAATGAGTTACAGTTTTAG+GGG | + | chr1.2:9194010-9194029 | MS.gene33207:intron | 30.0% |
| !! | TGCAGTTAGTGGATTAAATA+GGG | + | chr1.2:9192895-9192914 | MS.gene33207:intron | 30.0% |
| AAAAACCTCACTAGTTGACA+AGG | - | chr1.2:9194605-9194624 | None:intergenic | 35.0% | |
| AGGTGAAAATTGCAGACATA+TGG | - | chr1.2:9193485-9193504 | None:intergenic | 35.0% | |
| ATCAATGAATGTGGAACAGA+GGG | + | chr1.2:9192935-9192954 | MS.gene33207:intron | 35.0% | |
| CACAACTGCAAATGAAACTA+AGG | + | chr1.2:9194645-9194664 | MS.gene33207:CDS | 35.0% | |
| CTTAGTTTCATTTGCAGTTG+TGG | - | chr1.2:9194647-9194666 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCTTCGAAA+CGG | + | chr1.2:9192250-9192269 | MS.gene33207:CDS | 35.0% | |
| GAACCAATGAGAAATGAGTT+TGG | + | chr1.2:9193939-9193958 | MS.gene33207:intron | 35.0% | |
| GATGATTTCTTTGACTAGGT+TGG | + | chr1.2:9194343-9194362 | MS.gene33207:intron | 35.0% | |
| GGTGCATAAAATCAAGTGAA+TGG | + | chr1.2:9194265-9194284 | MS.gene33207:intron | 35.0% | |
| TAATCCACTAACTGCATGAT+CGG | - | chr1.2:9192891-9192910 | None:intergenic | 35.0% | |
| TATAGTGCACTTAACTACAC+AGG | + | chr1.2:9193719-9193738 | MS.gene33207:CDS | 35.0% | |
| TATCAATGAATGTGGAACAG+AGG | + | chr1.2:9192934-9192953 | MS.gene33207:intron | 35.0% | |
| TCATATGCTCAACTTAAACG+CGG | - | chr1.2:9193863-9193882 | None:intergenic | 35.0% | |
| TCGCTTAAAATTCATGCACA+GGG | - | chr1.2:9193759-9193778 | None:intergenic | 35.0% | |
| TGCATTTCTAAACTGAGTCA+GGG | + | chr1.2:9194186-9194205 | MS.gene33207:intron | 35.0% | |
| TGCTGACAATTGACAAAGAA+AGG | - | chr1.2:9193025-9193044 | None:intergenic | 35.0% | |
| TTGCATTTCTAAACTGAGTC+AGG | + | chr1.2:9194185-9194204 | MS.gene33207:intron | 35.0% | |
| ! | AGCATTATTTTCCCCAAAAG+TGG | + | chr1.2:9194565-9194584 | MS.gene33207:CDS | 35.0% |
| ! | GCATTATTTTCCCCAAAAGT+GGG | + | chr1.2:9194566-9194585 | MS.gene33207:CDS | 35.0% |
| ! | GGATCTCAGAAAGTTCTTTT+GGG | - | chr1.2:9194687-9194706 | None:intergenic | 35.0% |
| ! | TGGATCTCAGAAAGTTCTTT+TGG | - | chr1.2:9194688-9194707 | None:intergenic | 35.0% |
| !! | ACTTCTTATGTTTGCTATGC+AGG | + | chr1.2:9193592-9193611 | MS.gene33207:intron | 35.0% |
| !! | ATATGGAGTTGATGACAGTA+GGG | + | chr1.2:9193651-9193670 | MS.gene33207:CDS | 35.0% |
| !! | GCAGTTAGTGGATTAAATAG+GGG | + | chr1.2:9192896-9192915 | MS.gene33207:intron | 35.0% |
| !! | TGATTTTCTTAGGTTGTTGG+AGG | + | chr1.2:9192326-9192345 | MS.gene33207:CDS | 35.0% |
| !!! | AGCACATCGATTTTGAAGAA+TGG | - | chr1.2:9194511-9194530 | None:intergenic | 35.0% |
| !!! | AGGGAAATAGTGGATTTTCA+TGG | + | chr1.2:9193674-9193693 | MS.gene33207:CDS | 35.0% |
| AAATCCGATCATGCAGTTAG+TGG | + | chr1.2:9192884-9192903 | MS.gene33207:intron | 40.0% | |
| AATTGCAAGACAAAGTTGCC+TGG | + | chr1.2:9193615-9193634 | MS.gene33207:CDS | 40.0% | |
| AGAAACTTATCACGCCAATC+CGG | - | chr1.2:9192174-9192193 | None:intergenic | 40.0% | |
| ATAGGAAAACTAGGGTGTGT+AGG | + | chr1.2:9194307-9194326 | MS.gene33207:intron | 40.0% | |
| ATTGCAAGACAAAGTTGCCT+GGG | + | chr1.2:9193616-9193635 | MS.gene33207:CDS | 40.0% | |
| CAAACTAACTACATCAGCAC+TGG | + | chr1.2:9194729-9194748 | MS.gene33207:CDS | 40.0% | |
| CAACTCCATATCAGAACTCT+TGG | - | chr1.2:9193642-9193661 | None:intergenic | 40.0% | |
| GAAATGAGTTTGGACCTCTA+AGG | + | chr1.2:9193949-9193968 | MS.gene33207:intron | 40.0% | |
| GGTCCAAACTCATTTCTCAT+TGG | - | chr1.2:9193945-9193964 | None:intergenic | 40.0% | |
| GTCGCTTAAAATTCATGCAC+AGG | - | chr1.2:9193760-9193779 | None:intergenic | 40.0% | |
| TCAATGAATGTGGAACAGAG+GGG | + | chr1.2:9192936-9192955 | MS.gene33207:intron | 40.0% | |
| TCTCATTCTTTGTGCAGGTT+TGG | + | chr1.2:9194408-9194427 | MS.gene33207:intron | 40.0% | |
| TCTCTGTGACATGGAAAAGT+TGG | - | chr1.2:9193525-9193544 | None:intergenic | 40.0% | |
| TCTTCTCTCATTCTTTGTGC+AGG | + | chr1.2:9194403-9194422 | MS.gene33207:intron | 40.0% | |
| TGGTGTAACTATGCAGAACA+AGG | - | chr1.2:9193505-9193524 | None:intergenic | 40.0% | |
| TGTGCTTAACAAGCTTGTGA+AGG | + | chr1.2:9194525-9194544 | MS.gene33207:CDS | 40.0% | |
| ! | ATGGCTGGTTCAATACATCT+TGG | - | chr1.2:9194492-9194511 | None:intergenic | 40.0% |
| ! | GATACTCTGAAAGAGATCAG+GGG | + | chr1.2:9194751-9194770 | MS.gene33207:CDS | 40.0% |
| ! | GGATACTCTGAAAGAGATCA+GGG | + | chr1.2:9194750-9194769 | MS.gene33207:CDS | 40.0% |
| ! | GTCAACTAGTGAGGTTTTTG+AGG | + | chr1.2:9194606-9194625 | MS.gene33207:CDS | 40.0% |
| ! | TGGATACTCTGAAAGAGATC+AGG | + | chr1.2:9194749-9194768 | MS.gene33207:CDS | 40.0% |
| ! | TTTTCTGATCTTGGGACTGT+TGG | + | chr1.2:9193099-9193118 | MS.gene33207:intron | 40.0% |
| !! | AGTGGATTTTCATGGAGAGA+TGG | + | chr1.2:9193682-9193701 | MS.gene33207:CDS | 40.0% |
| !! | GATATGGAGTTGATGACAGT+AGG | + | chr1.2:9193650-9193669 | MS.gene33207:CDS | 40.0% |
| !!! | CAGAAAGTTCTTTTGGGACA+TGG | - | chr1.2:9194681-9194700 | None:intergenic | 40.0% |
| !!! | CATCGATTTTGAAGAATGGC+TGG | - | chr1.2:9194507-9194526 | None:intergenic | 40.0% |
| CAATGAATGTGGAACAGAGG+GGG | + | chr1.2:9192937-9192956 | MS.gene33207:intron | 45.0% | |
| CCAGATCGAACAAACGTTAC+CGG | + | chr1.2:9192152-9192171 | MS.gene33207:CDS | 45.0% | |
| GCAATCCTTGTCAACTAGTG+AGG | + | chr1.2:9194597-9194616 | MS.gene33207:CDS | 45.0% | |
| TCGAACAAACGTTACCGGAT+TGG | + | chr1.2:9192157-9192176 | MS.gene33207:CDS | 45.0% | |
| TGAAGGAGAGGTTACGAAAG+AGG | + | chr1.2:9192299-9192318 | MS.gene33207:CDS | 45.0% | |
| AAAGTCTCACTGTGCAGAGG+AGG | - | chr1.2:9194808-9194827 | None:intergenic | 50.0% | |
| ACCAAAGTCTCACTGTGCAG+AGG | - | chr1.2:9194811-9194830 | None:intergenic | 50.0% | |
| ACTAGGGTGTGTAGGACAGT+AGG | + | chr1.2:9194315-9194334 | MS.gene33207:intron | 50.0% | |
| AGACGTGACTCCTTGAGATG+TGG | + | chr1.2:9193542-9193561 | MS.gene33207:intron | 50.0% | |
| AGGTAACCGAAGTAGTGCAC+CGG | - | chr1.2:9194464-9194483 | None:intergenic | 50.0% | |
| CAACACAGACAAGACGCATC+AGG | - | chr1.2:9193278-9193297 | None:intergenic | 50.0% | |
| CATATCAGAACTCTTGGCCC+AGG | - | chr1.2:9193636-9193655 | None:intergenic | 50.0% | |
| CATGGGTCGTTGTTTGCTCT+TGG | + | chr1.2:9192987-9193006 | MS.gene33207:intron | 50.0% | |
| CCGGTAACGTTTGTTCGATC+TGG | - | chr1.2:9192155-9192174 | None:intergenic | 50.0% | |
| GACAGTAGGGAGGGAAATAG+TGG | + | chr1.2:9193664-9193683 | MS.gene33207:CDS | 50.0% | |
| GCACAGTGAGACTTTGGTAG+AGG | + | chr1.2:9194813-9194832 | MS.gene33207:CDS | 50.0% | |
| TCCCCAAAAGTGGGTCTCTA+GGG | + | chr1.2:9194575-9194594 | MS.gene33207:CDS | 50.0% | |
| TCCTCTGCACAGTGAGACTT+TGG | + | chr1.2:9194807-9194826 | MS.gene33207:CDS | 50.0% | |
| TCTGATCTTGGGACTGTTGG+TGG | + | chr1.2:9193102-9193121 | MS.gene33207:intron | 50.0% | |
| TTCCCCAAAAGTGGGTCTCT+AGG | + | chr1.2:9194574-9194593 | MS.gene33207:CDS | 50.0% | |
| TTCTTCGAAACGGCGTCGTT+TGG | + | chr1.2:9192260-9192279 | MS.gene33207:CDS | 50.0% | |
| ! | ACTCTGAAAGAGATCAGGGG+TGG | + | chr1.2:9194754-9194773 | MS.gene33207:CDS | 50.0% |
| ! | ATCTTGGGACTGTTGGTGGA+AGG | + | chr1.2:9193106-9193125 | MS.gene33207:intron | 50.0% |
| ! | CAAGCTTGTGAAGGAGTGTG+AGG | + | chr1.2:9194534-9194553 | MS.gene33207:CDS | 50.0% |
| ! | CTGGGCCAAGAGTTCTGATA+TGG | + | chr1.2:9193634-9193653 | MS.gene33207:CDS | 50.0% |
| ! | TTGCCCTAGAGACCCACTTT+TGG | - | chr1.2:9194581-9194600 | None:intergenic | 50.0% |
| !! | GGAGTTGATGACAGTAGGGA+GGG | + | chr1.2:9193655-9193674 | MS.gene33207:CDS | 50.0% |
| !! | TGCCCTAGAGACCCACTTTT+GGG | - | chr1.2:9194580-9194599 | None:intergenic | 50.0% |
| !! | TGGAGTTGATGACAGTAGGG+AGG | + | chr1.2:9193654-9193673 | MS.gene33207:CDS | 50.0% |
| ACAAGACGCATCAGGCCCTT+GGG | - | chr1.2:9193270-9193289 | None:intergenic | 55.0% | |
| AGCGAACCGGTGCACTACTT+CGG | + | chr1.2:9194455-9194474 | MS.gene33207:CDS | 55.0% | |
| CGTCGTTTGGATGAGGATGG+TGG | + | chr1.2:9192273-9192292 | MS.gene33207:CDS | 55.0% | |
| GAAACGGCGTCGTTTGGATG+AGG | + | chr1.2:9192266-9192285 | MS.gene33207:CDS | 55.0% | |
| GGAGTCACGTCTCTGTGACA+TGG | - | chr1.2:9193534-9193553 | None:intergenic | 55.0% | |
| GGGTCGTTGTTTGCTCTTGG+TGG | + | chr1.2:9192990-9193009 | MS.gene33207:intron | 55.0% | |
| TACGCTGGGTCCACATCTCA+AGG | - | chr1.2:9193555-9193574 | None:intergenic | 55.0% | |
| ! | GATGAGGATGGTGGTGCTGA+AGG | + | chr1.2:9192282-9192301 | MS.gene33207:CDS | 55.0% |
| !! | GCCCTAGAGACCCACTTTTG+GGG | - | chr1.2:9194579-9194598 | None:intergenic | 55.0% |
| ACCACTGGGGTCTAGCCCAA+GGG | + | chr1.2:9193252-9193271 | MS.gene33207:intron | 60.0% | |
| CGGCGTCGTTTGGATGAGGA+TGG | + | chr1.2:9192270-9192289 | MS.gene33207:CDS | 60.0% | |
| GACAAGACGCATCAGGCCCT+TGG | - | chr1.2:9193271-9193290 | None:intergenic | 60.0% | |
| TACCACTGGGGTCTAGCCCA+AGG | + | chr1.2:9193251-9193270 | MS.gene33207:intron | 60.0% | |
| ! | GGATGGTGGTGCTGAAGGAG+AGG | + | chr1.2:9192287-9192306 | MS.gene33207:CDS | 60.0% |
| ! | GCCCTTGGGCTAGACCCCAG+TGG | - | chr1.2:9193256-9193275 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 9192126 | 9194840 | 9192126 | ID=MS.gene33207 |
| chr1.2 | mRNA | 9192126 | 9194840 | 9192126 | ID=MS.gene33207.t1;Parent=MS.gene33207 |
| chr1.2 | exon | 9192126 | 9192413 | 9192126 | ID=MS.gene33207.t1.exon1;Parent=MS.gene33207.t1 |
| chr1.2 | CDS | 9192126 | 9192413 | 9192126 | ID=cds.MS.gene33207.t1;Parent=MS.gene33207.t1 |
| chr1.2 | exon | 9193614 | 9193740 | 9193614 | ID=MS.gene33207.t1.exon2;Parent=MS.gene33207.t1 |
| chr1.2 | CDS | 9193614 | 9193740 | 9193614 | ID=cds.MS.gene33207.t1;Parent=MS.gene33207.t1 |
| chr1.2 | exon | 9194425 | 9194840 | 9194425 | ID=MS.gene33207.t1.exon3;Parent=MS.gene33207.t1 |
| chr1.2 | CDS | 9194425 | 9194840 | 9194425 | ID=cds.MS.gene33207.t1;Parent=MS.gene33207.t1 |
| Gene Sequence |
| Protein sequence |
