Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052464.t1 | XP_024642050.1 | 95.5 | 423 | 19 | 0 | 427 | 849 | 29 | 451 | 3.20E-229 | 805.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052464.t1 | P95648 | 41.2 | 199 | 109 | 4 | 146 | 342 | 20 | 212 | 1.1e-33 | 146.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052464.t1 | A0A3Q7J2P8 | 66.3 | 901 | 214 | 6 | 1 | 847 | 47 | 911 | 0.0e+00 | 1144.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene052464 | 0.812028 | 5.21E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene052464 | 0.826569 | 2.52E-54 | -1.69E-46 |
| MS.gene049669 | MS.gene052464 | 0.806299 | 8.80E-50 | -1.69E-46 |
| MS.gene051122 | MS.gene052464 | 0.803586 | 3.25E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene052464 | 0.800729 | 1.26E-48 | -1.69E-46 |
| MS.gene052389 | MS.gene052464 | 0.821038 | 4.99E-53 | -1.69E-46 |
| MS.gene052464 | MS.gene052586 | 0.812315 | 4.51E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene052674 | 0.81127 | 7.61E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene052675 | 0.805788 | 1.13E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene052677 | 0.812679 | 3.75E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene05414 | 0.817077 | 3.98E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene054479 | 0.825307 | 5.03E-54 | -1.69E-46 |
| MS.gene052464 | MS.gene054930 | 0.820543 | 6.49E-53 | -1.69E-46 |
| MS.gene052464 | MS.gene05595 | 0.807406 | 5.14E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene056174 | 0.803696 | 3.08E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene056873 | 0.826212 | 3.07E-54 | -1.69E-46 |
| MS.gene052464 | MS.gene057194 | 0.81797 | 2.50E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene05761 | 0.851128 | 1.09E-60 | -1.69E-46 |
| MS.gene052464 | MS.gene058429 | 0.81413 | 1.80E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene060011 | 0.822362 | 2.47E-53 | -1.69E-46 |
| MS.gene052464 | MS.gene060259 | 0.800342 | 1.51E-48 | -1.69E-46 |
| MS.gene052464 | MS.gene060683 | 0.804549 | 2.05E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene060685 | 0.803171 | 3.96E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene060850 | 0.827053 | 1.93E-54 | -1.69E-46 |
| MS.gene052464 | MS.gene060851 | 0.841887 | 3.62E-58 | -1.69E-46 |
| MS.gene052464 | MS.gene060852 | 0.843046 | 1.78E-58 | -1.69E-46 |
| MS.gene052464 | MS.gene061488 | 0.809723 | 1.64E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene06344 | 0.818233 | 2.18E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene064135 | 0.822095 | 2.85E-53 | -1.69E-46 |
| MS.gene052464 | MS.gene06657 | 0.833732 | 4.50E-56 | -1.69E-46 |
| MS.gene052464 | MS.gene06698 | 0.816279 | 6.00E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene06871 | 0.829189 | 5.92E-55 | -1.69E-46 |
| MS.gene052464 | MS.gene068987 | 0.841232 | 5.38E-58 | -1.69E-46 |
| MS.gene052464 | MS.gene06911 | 0.810366 | 1.19E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene07150 | 0.812694 | 3.73E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene072375 | -0.801133 | 1.04E-48 | -1.69E-46 |
| MS.gene052464 | MS.gene074100 | 0.817685 | 2.90E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene20392 | 0.809358 | 1.97E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene20600 | 0.805882 | 1.08E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene21549 | 0.817746 | 2.81E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene23519 | -0.818484 | 1.91E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene23945 | 0.807289 | 5.44E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene24417 | 0.803953 | 2.73E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene25121 | 0.802285 | 6.03E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene25151 | 0.802873 | 4.56E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene26485 | 0.810314 | 1.23E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene27381 | 0.830395 | 3.01E-55 | -1.69E-46 |
| MS.gene052464 | MS.gene29000 | 0.807413 | 5.12E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene29086 | 0.803977 | 2.69E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene29986 | 0.815451 | 9.18E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene30368 | 0.814372 | 1.59E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene30397 | 0.82698 | 2.01E-54 | -1.69E-46 |
| MS.gene052464 | MS.gene31059 | 0.826758 | 2.28E-54 | -1.69E-46 |
| MS.gene052464 | MS.gene31116 | 0.820054 | 8.40E-53 | -1.69E-46 |
| MS.gene052464 | MS.gene31551 | 0.803773 | 2.97E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene32231 | 0.812341 | 4.45E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene33177 | 0.805628 | 1.22E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene33180 | 0.814344 | 1.62E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene33207 | 0.81528 | 1.00E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene34085 | 0.803313 | 3.70E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene34430 | -0.802684 | 4.99E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene34667 | 0.816274 | 6.02E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene35107 | 0.808579 | 2.89E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene36154 | 0.817091 | 3.95E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene37895 | 0.801247 | 9.85E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene40006 | 0.800827 | 1.20E-48 | -1.69E-46 |
| MS.gene052464 | MS.gene40946 | 0.804082 | 2.56E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene44955 | 0.802107 | 6.56E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene49553 | 0.805986 | 1.02E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene49602 | 0.815323 | 9.80E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene51650 | 0.804122 | 2.51E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene52059 | 0.83635 | 9.85E-57 | -1.69E-46 |
| MS.gene052464 | MS.gene53368 | 0.806155 | 9.44E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene53771 | 0.820139 | 8.03E-53 | -1.69E-46 |
| MS.gene052464 | MS.gene53859 | -0.828413 | 9.11E-55 | -1.69E-46 |
| MS.gene052464 | MS.gene53861 | -0.815288 | 9.98E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene53922 | 0.819164 | 1.34E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene55175 | 0.816016 | 6.87E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene56073 | 0.803269 | 3.78E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene59282 | 0.828609 | 8.17E-55 | -1.69E-46 |
| MS.gene052464 | MS.gene59552 | 0.80632 | 8.71E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene60277 | 0.815356 | 9.64E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene60302 | 0.809494 | 1.84E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene62258 | 0.801578 | 8.43E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene62686 | 0.807022 | 6.19E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene63058 | 0.81943 | 1.17E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene66410 | 0.815681 | 8.16E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene68293 | 0.806018 | 1.01E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene71871 | 0.804219 | 2.40E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene71931 | -0.803161 | 3.98E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene72146 | 0.82634 | 2.86E-54 | -1.69E-46 |
| MS.gene052464 | MS.gene73820 | 0.811686 | 6.18E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene74530 | 0.805145 | 1.54E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene75052 | 0.831904 | 1.28E-55 | -1.69E-46 |
| MS.gene052464 | MS.gene77208 | 0.804822 | 1.80E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene77231 | 0.801026 | 1.09E-48 | -1.69E-46 |
| MS.gene052464 | MS.gene77579 | 0.809202 | 2.13E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene77971 | -0.826857 | 2.16E-54 | -1.69E-46 |
| MS.gene052464 | MS.gene77972 | -0.807379 | 5.20E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene78629 | -0.80827 | 3.36E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene80355 | 0.813199 | 2.89E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene81588 | 0.802222 | 6.21E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene85520 | 0.806922 | 6.50E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene87170 | 0.813668 | 2.28E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene87282 | 0.822394 | 2.43E-53 | -1.69E-46 |
| MS.gene052464 | MS.gene88883 | 0.803853 | 2.86E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene89350 | 0.850211 | 1.97E-60 | -1.69E-46 |
| MS.gene052464 | MS.gene90411 | 0.821604 | 3.70E-53 | -1.69E-46 |
| MS.gene052464 | MS.gene91965 | 0.803907 | 2.79E-49 | -1.69E-46 |
| MS.gene052464 | MS.gene94067 | 0.809875 | 1.52E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene94111 | 0.814013 | 1.91E-51 | -1.69E-46 |
| MS.gene052464 | MS.gene95697 | 0.809315 | 2.01E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene96973 | 0.816734 | 4.75E-52 | -1.69E-46 |
| MS.gene052464 | MS.gene97157 | 0.825437 | 4.69E-54 | -1.69E-46 |
| MS.gene052464 | MS.gene97477 | -0.800082 | 1.70E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052464.t1 | MTR_6g088470 | 98.598 | 428 | 6 | 0 | 1 | 428 | 47 | 474 | 0.0 | 876 |
| MS.gene052464.t1 | MTR_6g088460 | 95.487 | 421 | 19 | 0 | 427 | 847 | 29 | 449 | 0.0 | 836 |
| MS.gene052464.t1 | MTR_6g088470 | 89.720 | 428 | 7 | 1 | 1 | 428 | 47 | 437 | 0.0 | 777 |
| MS.gene052464.t1 | MTR_0776s0010 | 32.143 | 280 | 171 | 7 | 153 | 427 | 20 | 285 | 8.86e-34 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052464.t1 | AT3G24530 | 79.350 | 431 | 89 | 0 | 1 | 431 | 1 | 431 | 0.0 | 726 |
| MS.gene052464.t1 | AT3G24530 | 79.350 | 431 | 89 | 0 | 1 | 431 | 49 | 479 | 0.0 | 724 |
| MS.gene052464.t1 | AT3G24530 | 79.845 | 387 | 78 | 0 | 45 | 431 | 1 | 387 | 0.0 | 655 |
| MS.gene052464.t1 | AT5G19540 | 67.654 | 405 | 127 | 3 | 449 | 849 | 54 | 458 | 0.0 | 573 |
| MS.gene052464.t1 | AT5G19540 | 67.654 | 405 | 127 | 3 | 449 | 849 | 54 | 458 | 0.0 | 573 |
| MS.gene052464.t1 | AT2G03430 | 41.071 | 112 | 56 | 3 | 5 | 115 | 86 | 188 | 7.02e-11 | 63.9 |
Find 180 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGACAATGCTTCTATTTC+AGG | 0.070406 | 6.1:+75794308 | None:intergenic |
| TCATCAACTCAACAAGAAAA+TGG | 0.189799 | 6.1:-75797596 | MS.gene052464:CDS |
| GATTAATGCAAGAGAAAATT+TGG | 0.194417 | 6.1:-75801018 | MS.gene052464:CDS |
| TCAATTACCAGTTTGAAAAT+TGG | 0.209896 | 6.1:-75794680 | MS.gene052464:CDS |
| TGGCGGTGGATCTGTGGTTT+TGG | 0.230954 | 6.1:-75793342 | MS.gene052464:CDS |
| AACTCAAAACCTGGAGTAAT+TGG | 0.256723 | 6.1:+75794628 | None:intergenic |
| AATAAGATTGCCATACTTTA+CGG | 0.263181 | 6.1:-75793571 | MS.gene052464:CDS |
| GGTAATTGAGACAATCTAAT+TGG | 0.268697 | 6.1:+75794694 | None:intergenic |
| CGTAGGACTCAAGCTCCTTC+TGG | 0.285730 | 6.1:+75794871 | None:intergenic |
| GAATTTGAAAAGGGTGGTTT+TGG | 0.293134 | 6.1:+75797647 | None:intergenic |
| TCCCTAAGTTTGTCATTTCC+AGG | 0.294021 | 6.1:+75802335 | None:intergenic |
| GCAGAACGTAGTTTGCTATA+TGG | 0.294222 | 6.1:-75801152 | MS.gene052464:CDS |
| AAGACAGTGGCTAGGGCTTC+AGG | 0.299667 | 6.1:-75793418 | MS.gene052464:CDS |
| GAATTTGAGCCATCTGTCTT+TGG | 0.312878 | 6.1:+75794730 | None:intergenic |
| AAACGCTTCCGATGAGAAAA+AGG | 0.312911 | 6.1:+75794363 | None:intergenic |
| TCTTCGGTACCACGGTGAAT+TGG | 0.317020 | 6.1:-75793312 | MS.gene052464:CDS |
| ATGTTTCTGCAGGAAACAAT+AGG | 0.317133 | 6.1:-75803244 | MS.gene052464:CDS |
| CCGATAACATACCTTCTTCC+TGG | 0.326464 | 6.1:+75801938 | None:intergenic |
| AAATCAGATGATAAGGACTA+TGG | 0.327406 | 6.1:-75801374 | MS.gene052464:CDS |
| CACCTTTACACCTTGCAGTT+TGG | 0.339947 | 6.1:-75802557 | MS.gene052464:CDS |
| AAGGAACTTTCAAATATTGT+AGG | 0.359061 | 6.1:-75802224 | MS.gene052464:CDS |
| CAGCGAAACCAAAGCCAAAA+TGG | 0.360414 | 6.1:-75802258 | MS.gene052464:CDS |
| CTCCATGGATCAAGATCTTC+CGG | 0.363319 | 6.1:+75794434 | None:intergenic |
| GTGGGCGAAAGGCATGCTTT+TGG | 0.367896 | 6.1:-75802171 | MS.gene052464:CDS |
| TTATCATCTGATTTCTGCAT+TGG | 0.376034 | 6.1:+75801383 | None:intergenic |
| CGATTGTGTCCTTTATGAAA+TGG | 0.381202 | 6.1:-75794850 | MS.gene052464:CDS |
| GAAGCTATTACTCGTTTCAT+TGG | 0.382036 | 6.1:+75801275 | None:intergenic |
| ATAAGATTGCCATACTTTAC+GGG | 0.388932 | 6.1:-75793570 | MS.gene052464:CDS |
| CTTCGGTACCACGGTGAATT+GGG | 0.392853 | 6.1:-75793311 | MS.gene052464:CDS |
| TGAAAATACAACTACGAAAG+TGG | 0.398331 | 6.1:-75802190 | MS.gene052464:CDS |
| GAGGAGAAATCTGTTATAAT+TGG | 0.399530 | 6.1:-75793649 | MS.gene052464:CDS |
| ATGGCCTTTCTTGGGAATCC+TGG | 0.401920 | 6.1:-75802095 | MS.gene052464:CDS |
| AACTTAGGGAACTATTAAAC+TGG | 0.411802 | 6.1:-75802322 | MS.gene052464:CDS |
| CTCAATCTCCTTCCGAGATC+CGG | 0.412651 | 6.1:+75793535 | None:intergenic |
| GTACTTCCTATGCCGCTTGT+TGG | 0.414173 | 6.1:-75794386 | MS.gene052464:CDS |
| GGACTATGGGTTGGAAGCCT+TGG | 0.414525 | 6.1:-75801360 | MS.gene052464:CDS |
| TGCTAGCTACCATTTCATAA+AGG | 0.415690 | 6.1:+75794841 | None:intergenic |
| GATTTAGTTGGCGAGTTTGT+CGG | 0.416401 | 6.1:-75801978 | MS.gene052464:CDS |
| CCTTGGAAGATTACTTCATA+TGG | 0.418921 | 6.1:-75802045 | MS.gene052464:CDS |
| TTCTCTTGCATTAATCATCA+TGG | 0.422736 | 6.1:+75801025 | None:intergenic |
| AAAGGGATTGATGGTTCTAC+TGG | 0.424242 | 6.1:-75797518 | MS.gene052464:CDS |
| ATTTCAGGATATTCTGATGC+TGG | 0.424776 | 6.1:+75794323 | None:intergenic |
| AATGTTGCAGCCTTCAATTC+CGG | 0.426914 | 6.1:-75794453 | MS.gene052464:CDS |
| AATCATCTTTCGCAAGGCCC+TGG | 0.426961 | 6.1:-75802353 | MS.gene052464:CDS |
| AACAACGTAAGGAGACAAAC+GGG | 0.431806 | 6.1:-75801061 | MS.gene052464:CDS |
| GATATAAGAAGAAGTTTCCT+TGG | 0.434374 | 6.1:-75797472 | MS.gene052464:CDS |
| TTGCTTTGTAGAAACTGTTC+TGG | 0.435673 | 6.1:+75797569 | None:intergenic |
| GATGAGAGGCGCAGAGCTCT+TGG | 0.439509 | 6.1:-75802149 | MS.gene052464:CDS |
| TACAGTCAAAGCTAAGTCTT+AGG | 0.442072 | 6.1:+75800994 | None:intergenic |
| CCCCGCATATGGCCTTTCTT+GGG | 0.442716 | 6.1:-75802103 | MS.gene052464:CDS |
| AGGTTCAAGAAAGGGATTGA+TGG | 0.445776 | 6.1:-75797527 | MS.gene052464:CDS |
| GGAAATCCAACAAGAAAAGA+AGG | 0.449183 | 6.1:+75797668 | None:intergenic |
| GTCATACCGGTCCGAAAACC+AGG | 0.449721 | 6.1:-75801956 | MS.gene052464:CDS |
| CAAAATGGATGAACTTGAAA+AGG | 0.453916 | 6.1:-75802243 | MS.gene052464:CDS |
| AATGCAGAAATCAGATGATA+AGG | 0.455044 | 6.1:-75801381 | MS.gene052464:CDS |
| CATCAACTCAACAAGAAAAT+GGG | 0.462157 | 6.1:-75797595 | MS.gene052464:CDS |
| GGTGGCCACATGCCGGATCT+CGG | 0.463228 | 6.1:-75793547 | MS.gene052464:CDS |
| ACATTGGAAGATTTAGAAGC+AGG | 0.466998 | 6.1:-75800945 | MS.gene052464:intron |
| TCCTGGAACAGGTAAAACTA+TGG | 0.467198 | 6.1:-75802078 | MS.gene052464:CDS |
| TTCTAAATCTTCCAATGTAA+TGG | 0.467879 | 6.1:+75800950 | None:intergenic |
| GACAGATGGCTCAAATTCTC+AGG | 0.469611 | 6.1:-75794725 | MS.gene052464:CDS |
| ATGTTACCACAGAAATTCTT+CGG | 0.470066 | 6.1:-75793282 | MS.gene052464:CDS |
| CGTTTCTGAAGACAGTGGCT+AGG | 0.470149 | 6.1:-75793426 | MS.gene052464:CDS |
| CCTCAGAAAAGCAATGGATA+AGG | 0.472194 | 6.1:-75793599 | MS.gene052464:CDS |
| GCCCTGGAAATGACAAACTT+AGG | 0.473007 | 6.1:-75802337 | MS.gene052464:CDS |
| CTATGGGTTGGAAGCCTTGG+AGG | 0.474129 | 6.1:-75801357 | MS.gene052464:CDS |
| CCCTAAGTTTGTCATTTCCA+GGG | 0.474189 | 6.1:+75802336 | None:intergenic |
| ATCAGAGAAGGTTGAGATTG+AGG | 0.474323 | 6.1:-75803186 | MS.gene052464:CDS |
| CATAGAAGCGTTGATACAAA+AGG | 0.476828 | 6.1:-75801096 | MS.gene052464:CDS |
| TTTCTTGGGAATCCTGGAAC+AGG | 0.477449 | 6.1:-75802089 | MS.gene052464:CDS |
| TGTTTCTGCAGGAAACAATA+GGG | 0.478049 | 6.1:-75803243 | MS.gene052464:CDS |
| GGGTAACAGCTTGGTCCATA+AGG | 0.478495 | 6.1:-75793477 | MS.gene052464:CDS |
| TTTGAGGGTGGAATTTGAAA+AGG | 0.479151 | 6.1:+75797637 | None:intergenic |
| TCAAGATCTTCCGGAATTGA+AGG | 0.479834 | 6.1:+75794443 | None:intergenic |
| CGGATCTCGGAAGGAGATTG+AGG | 0.480710 | 6.1:-75793534 | MS.gene052464:CDS |
| CGGAAGCGTTTGTGCAAATG+TGG | 0.481614 | 6.1:-75794351 | MS.gene052464:CDS |
| CAGCTTGGTCCATAAGGAAA+AGG | 0.483406 | 6.1:-75793471 | MS.gene052464:CDS |
| GCACAGCTGCTTCTTGCACA+TGG | 0.485166 | 6.1:-75802984 | MS.gene052464:CDS |
| ATTTCATGAGGTTCAAGAAA+GGG | 0.490455 | 6.1:-75797535 | MS.gene052464:CDS |
| AAACAACGTAAGGAGACAAA+CGG | 0.492681 | 6.1:-75801062 | MS.gene052464:CDS |
| TGAGACCTTCCAATTACTCC+AGG | 0.492747 | 6.1:-75794637 | MS.gene052464:intron |
| ACACCTCTTCATGTTTCTGC+AGG | 0.492960 | 6.1:-75803254 | MS.gene052464:CDS |
| TGATGTAAGTGCAGCAATGA+AGG | 0.493608 | 6.1:-75794282 | MS.gene052464:CDS |
| AGAGCTCTTGGTCTGCATGT+TGG | 0.493864 | 6.1:-75802137 | MS.gene052464:CDS |
| TTGAGGGTGGAATTTGAAAA+GGG | 0.494338 | 6.1:+75797638 | None:intergenic |
| AAAAGGCCAACAAGCGGCAT+AGG | 0.495123 | 6.1:+75794380 | None:intergenic |
| CTCAGAAAAGCAATGGATAA+GGG | 0.498778 | 6.1:-75793598 | MS.gene052464:CDS |
| ACTATGGTAGCACGCATCCT+TGG | 0.502013 | 6.1:-75802062 | MS.gene052464:CDS |
| GGCGAGTTTGTCGGTCATAC+CGG | 0.502758 | 6.1:-75801969 | MS.gene052464:CDS |
| TTATGAAATGGTAGCTAGCA+AGG | 0.507890 | 6.1:-75794838 | MS.gene052464:CDS |
| TCCCAAGAAAGGCCATATGC+GGG | 0.509629 | 6.1:+75802102 | None:intergenic |
| GAGTTCGATTTAGTCCCGTC+TGG | 0.510649 | 6.1:-75793508 | MS.gene052464:CDS |
| CCCTGGAAATGACAAACTTA+GGG | 0.510838 | 6.1:-75802336 | MS.gene052464:CDS |
| AAAATCGTAGTAATATTTGC+AGG | 0.511464 | 6.1:-75801308 | MS.gene052464:CDS |
| CTAGCCACTGTCTTCAGAAA+CGG | 0.513880 | 6.1:+75793427 | None:intergenic |
| GTTTCTGAAGACAGTGGCTA+GGG | 0.517393 | 6.1:-75793425 | MS.gene052464:CDS |
| AGAACTTCTTACCATTACAT+TGG | 0.531138 | 6.1:-75800961 | MS.gene052464:CDS |
| TTCTTTGCTGCCATGTGCAG+TGG | 0.540845 | 6.1:+75803023 | None:intergenic |
| CCTTTGAATCATCTTTCGCA+AGG | 0.544004 | 6.1:-75802359 | MS.gene052464:CDS |
| GATTTCATGAGGTTCAAGAA+AGG | 0.544931 | 6.1:-75797536 | MS.gene052464:CDS |
| CAATCTTGGCGGTGGATCTG+TGG | 0.546535 | 6.1:-75793348 | MS.gene052464:CDS |
| TAGTTAAATTTCTTCTTGAG+TGG | 0.547620 | 6.1:-75803214 | MS.gene052464:CDS |
| GTACAACGGACTGATTTAGT+TGG | 0.547776 | 6.1:-75801990 | MS.gene052464:CDS |
| CGGTCCGAAAACCAGGAAGA+AGG | 0.548721 | 6.1:-75801949 | MS.gene052464:intron |
| AAATTTCTTCTTGAGTGGCA+AGG | 0.549157 | 6.1:-75803209 | MS.gene052464:CDS |
| ACAGAAATTCTTCGGTATGT+TGG | 0.549627 | 6.1:-75793274 | MS.gene052464:CDS |
| CGAGAACCTCAGAAAAGCAA+TGG | 0.551497 | 6.1:-75793605 | MS.gene052464:CDS |
| TGGAAGATTACTTCATATGG+TGG | 0.552903 | 6.1:-75802042 | MS.gene052464:CDS |
| AGAGAATATGAGAAACCCTA+TGG | 0.555242 | 6.1:-75794808 | MS.gene052464:CDS |
| CGATTTAGTCCCGTCTGGTG+TGG | 0.555780 | 6.1:-75793503 | MS.gene052464:CDS |
| GAACCTCATGAAATCTGCAA+TGG | 0.556856 | 6.1:+75797544 | None:intergenic |
| AGATGATAAGGACTATGGGT+TGG | 0.557956 | 6.1:-75801369 | MS.gene052464:CDS |
| TACAGATCCAAGAAGCAGAA+GGG | 0.558979 | 6.1:-75801442 | MS.gene052464:intron |
| CATAAAAGCTTAGATCTCCA+TGG | 0.559110 | 6.1:+75794419 | None:intergenic |
| TAGTCCCGTCTGGTGTGGAG+TGG | 0.563205 | 6.1:-75793498 | MS.gene052464:CDS |
| GTTGAACCGTTATCAGACAT+TGG | 0.564903 | 6.1:-75793389 | MS.gene052464:CDS |
| GCCACATGCCGGATCTCGGA+AGG | 0.567733 | 6.1:-75793543 | MS.gene052464:CDS |
| ACAAAATACGGCAGATGTGG+AGG | 0.568405 | 6.1:-75793668 | MS.gene052464:CDS |
| TTCCGGAAGATCTTGATCCA+TGG | 0.569292 | 6.1:-75794436 | MS.gene052464:CDS |
| ACTTCTGTCACTTTATCAGT+AGG | 0.569855 | 6.1:+75802011 | None:intergenic |
| GGATCTCGGAAGGAGATTGA+GGG | 0.569864 | 6.1:-75793533 | MS.gene052464:CDS |
| CAACTACGAAAGTGGGCGAA+AGG | 0.572916 | 6.1:-75802182 | MS.gene052464:CDS |
| GCAAAGCCAATGTCTGATAA+CGG | 0.573019 | 6.1:+75793383 | None:intergenic |
| TGTTCCAGGATTCCCAAGAA+AGG | 0.574363 | 6.1:+75802091 | None:intergenic |
| TAATGCAGATTGCAGTGCTA+AGG | 0.575210 | 6.1:-75802484 | MS.gene052464:CDS |
| AGGACTCAAGCTCCTTCTGG+AGG | 0.576534 | 6.1:+75794874 | None:intergenic |
| GTACAGCTTGACACAAAATA+CGG | 0.576804 | 6.1:-75793680 | MS.gene052464:intron |
| AATCAGATGATAAGGACTAT+GGG | 0.576919 | 6.1:-75801373 | MS.gene052464:CDS |
| GAAAATACAACTACGAAAGT+GGG | 0.577609 | 6.1:-75802189 | MS.gene052464:CDS |
| CTGCACATGGCAGCAAAGAA+CGG | 0.579820 | 6.1:-75803020 | MS.gene052464:CDS |
| AGGGTGGAATTTGAAAAGGG+TGG | 0.581692 | 6.1:+75797641 | None:intergenic |
| TGCCAAACTGCAAGGTGTAA+AGG | 0.584464 | 6.1:+75802555 | None:intergenic |
| GTGTGGAGTGGGTAACAGCT+TGG | 0.589810 | 6.1:-75793486 | MS.gene052464:CDS |
| AGTCCCGTCTGGTGTGGAGT+GGG | 0.591895 | 6.1:-75793497 | MS.gene052464:CDS |
| GGAAGATTACTTCATATGGT+GGG | 0.592786 | 6.1:-75802041 | MS.gene052464:CDS |
| GACACAAAATACGGCAGATG+TGG | 0.592912 | 6.1:-75793671 | MS.gene052464:CDS |
| TGGAGAAACTCCACTGCACA+TGG | 0.593924 | 6.1:-75803033 | MS.gene052464:CDS |
| GGAGGAGATTATGTCTGTCA+TGG | 0.595950 | 6.1:-75801339 | MS.gene052464:CDS |
| CTGAAATAGAAGCATTGTCA+AGG | 0.597814 | 6.1:-75794307 | MS.gene052464:CDS |
| ATTCCATTGCAGATTTCATG+AGG | 0.598572 | 6.1:-75797547 | MS.gene052464:CDS |
| TTCCCAAGAAAGGCCATATG+CGG | 0.599142 | 6.1:+75802101 | None:intergenic |
| AATGTCTGATAACGGTTCAA+CGG | 0.600103 | 6.1:+75793391 | None:intergenic |
| ATACAGATCCAAGAAGCAGA+AGG | 0.600619 | 6.1:-75801443 | MS.gene052464:intron |
| TTACCCACTCCACACCAGAC+GGG | 0.604590 | 6.1:+75793494 | None:intergenic |
| CCCAAGAAAGGCCATATGCG+GGG | 0.604744 | 6.1:+75802103 | None:intergenic |
| CAAAACCTGGAGTAATTGGA+AGG | 0.605651 | 6.1:+75794632 | None:intergenic |
| CCATATGAAGTAATCTTCCA+AGG | 0.607858 | 6.1:+75802045 | None:intergenic |
| CAGATGTTAGTCTCTTTGCA+AGG | 0.609726 | 6.1:+75794255 | None:intergenic |
| TTAATGAGTGCCAAACTGCA+AGG | 0.610309 | 6.1:+75802547 | None:intergenic |
| TCCTTCCGAGATCCGGCATG+TGG | 0.610617 | 6.1:+75793542 | None:intergenic |
| CCTTGCGAAAGATGATTCAA+AGG | 0.611256 | 6.1:+75802359 | None:intergenic |
| TTAAAAGGATCACAAACTAG+AGG | 0.613345 | 6.1:-75794774 | MS.gene052464:CDS |
| ACAGATCCAAGAAGCAGAAG+GGG | 0.617047 | 6.1:-75801441 | MS.gene052464:intron |
| GGAGCTATTCTTCGGTACCA+CGG | 0.617266 | 6.1:-75793320 | MS.gene052464:CDS |
| TATGACTCTTAGATCTACAA+AGG | 0.619536 | 6.1:-75794477 | MS.gene052464:CDS |
| TGGATGCATCCAAAGACAGA+TGG | 0.619679 | 6.1:-75794739 | MS.gene052464:CDS |
| ATTATGTCTGTCATGGACAG+TGG | 0.622054 | 6.1:-75801332 | MS.gene052464:CDS |
| AAAGGCTTCAAAAGAGACCA+AGG | 0.623114 | 6.1:+75797455 | None:intergenic |
| TTTCCTGCAGAAACATGAAG+AGG | 0.623173 | 6.1:+75803251 | None:intergenic |
| TAAGATTGCCATACTTTACG+GGG | 0.624114 | 6.1:-75793569 | MS.gene052464:CDS |
| GGACTCAAGCTCCTTCTGGA+GGG | 0.634976 | 6.1:+75794875 | None:intergenic |
| TGAGTGGCAAGGATCAGAGA+AGG | 0.635362 | 6.1:-75803198 | MS.gene052464:CDS |
| GTTACCCACTCCACACCAGA+CGG | 0.637773 | 6.1:+75793493 | None:intergenic |
| ATGTGCAAGAAGCAGCTGTG+CGG | 0.641778 | 6.1:+75802986 | None:intergenic |
| AACATACCGAAGAATTTCTG+TGG | 0.646117 | 6.1:+75793276 | None:intergenic |
| GGAAGCGTTTGTGCAAATGT+GGG | 0.646979 | 6.1:-75794350 | MS.gene052464:CDS |
| CGAGTAATAGCTTCTAACGA+AGG | 0.650852 | 6.1:-75801266 | MS.gene052464:CDS |
| GACAGACATAATCTCCTCCA+AGG | 0.651577 | 6.1:+75801343 | None:intergenic |
| TGAGATTGAGGCTAAGAACA+TGG | 0.652336 | 6.1:-75803174 | MS.gene052464:intron |
| CCAAGAAAGGCCATATGCGG+GGG | 0.655438 | 6.1:+75802104 | None:intergenic |
| TCTCGGAAGGAGATTGAGGG+AGG | 0.670087 | 6.1:-75793530 | MS.gene052464:CDS |
| CAGATCCAAGAAGCAGAAGG+GGG | 0.685878 | 6.1:-75801440 | MS.gene052464:CDS |
| ATAAAGTGACAGAAGTACAA+CGG | 0.689430 | 6.1:-75802004 | MS.gene052464:CDS |
| CAGTGGCTAGGGCTTCAGGT+TGG | 0.695715 | 6.1:-75793414 | MS.gene052464:CDS |
| ACTTCCGTTTCTGAAGACAG+TGG | 0.697797 | 6.1:-75793431 | MS.gene052464:CDS |
| TTCATAAAGGACACAATCGT+AGG | 0.698872 | 6.1:+75794854 | None:intergenic |
| ACAACGTAAGGAGACAAACG+GGG | 0.700371 | 6.1:-75801060 | MS.gene052464:CDS |
| AAGATTGCCATACTTTACGG+GGG | 0.703694 | 6.1:-75793568 | MS.gene052464:CDS |
| CAACGTAAGGAGACAAACGG+GGG | 0.782675 | 6.1:-75801059 | MS.gene052464:CDS |
| ATCAGAGACCCAATTCACCG+TGG | 0.790349 | 6.1:+75793303 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 75793267 | 75803285 | 75793267 | ID=MS.gene052464 |
| chr6.1 | mRNA | 75793267 | 75803285 | 75793267 | ID=MS.gene052464.t1;Parent=MS.gene052464 |
| chr6.1 | exon | 75803175 | 75803285 | 75803175 | ID=MS.gene052464.t1.exon1;Parent=MS.gene052464.t1 |
| chr6.1 | CDS | 75803175 | 75803285 | 75803175 | ID=cds.MS.gene052464.t1;Parent=MS.gene052464.t1 |
| chr6.1 | exon | 75802959 | 75803057 | 75802959 | ID=MS.gene052464.t1.exon2;Parent=MS.gene052464.t1 |
| chr6.1 | CDS | 75802959 | 75803057 | 75802959 | ID=cds.MS.gene052464.t1;Parent=MS.gene052464.t1 |
| chr6.1 | exon | 75802479 | 75802589 | 75802479 | ID=MS.gene052464.t1.exon3;Parent=MS.gene052464.t1 |
| chr6.1 | CDS | 75802479 | 75802589 | 75802479 | ID=cds.MS.gene052464.t1;Parent=MS.gene052464.t1 |
| chr6.1 | exon | 75801950 | 75802393 | 75801950 | ID=MS.gene052464.t1.exon4;Parent=MS.gene052464.t1 |
| chr6.1 | CDS | 75801950 | 75802393 | 75801950 | ID=cds.MS.gene052464.t1;Parent=MS.gene052464.t1 |
| chr6.1 | exon | 75800946 | 75801459 | 75800946 | ID=MS.gene052464.t1.exon5;Parent=MS.gene052464.t1 |
| chr6.1 | CDS | 75800946 | 75801459 | 75800946 | ID=cds.MS.gene052464.t1;Parent=MS.gene052464.t1 |
| chr6.1 | exon | 75797448 | 75797695 | 75797448 | ID=MS.gene052464.t1.exon6;Parent=MS.gene052464.t1 |
| chr6.1 | CDS | 75797448 | 75797695 | 75797448 | ID=cds.MS.gene052464.t1;Parent=MS.gene052464.t1 |
| chr6.1 | exon | 75797300 | 75797337 | 75797300 | ID=MS.gene052464.t1.exon7;Parent=MS.gene052464.t1 |
| chr6.1 | CDS | 75797300 | 75797337 | 75797300 | ID=cds.MS.gene052464.t1;Parent=MS.gene052464.t1 |
| chr6.1 | exon | 75794638 | 75794908 | 75794638 | ID=MS.gene052464.t1.exon8;Parent=MS.gene052464.t1 |
| chr6.1 | CDS | 75794638 | 75794908 | 75794638 | ID=cds.MS.gene052464.t1;Parent=MS.gene052464.t1 |
| chr6.1 | exon | 75794254 | 75794537 | 75794254 | ID=MS.gene052464.t1.exon9;Parent=MS.gene052464.t1 |
| chr6.1 | CDS | 75794254 | 75794537 | 75794254 | ID=cds.MS.gene052464.t1;Parent=MS.gene052464.t1 |
| chr6.1 | exon | 75793267 | 75793696 | 75793267 | ID=MS.gene052464.t1.exon10;Parent=MS.gene052464.t1 |
| chr6.1 | CDS | 75793267 | 75793696 | 75793267 | ID=cds.MS.gene052464.t1;Parent=MS.gene052464.t1 |
| Gene Sequence |
| Protein sequence |
