Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34256.t1 | XP_013445513.1 | 96.8 | 663 | 12 | 1 | 1 | 663 | 1 | 654 | 0.00E+00 | 1204.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34256.t1 | P51281 | 42.6 | 563 | 306 | 6 | 67 | 616 | 6 | 564 | 9.3e-116 | 419.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34256.t1 | A0A072TPV0 | 96.8 | 663 | 12 | 1 | 1 | 663 | 1 | 654 | 0.0e+00 | 1204.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052469 | MS.gene34256 | 0.814699 | 1.35E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene34256 | 0.80567 | 1.19E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene34256 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene058120 | MS.gene34256 | 0.802229 | 6.20E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34256.t1 | MTR_8g463650 | 96.833 | 663 | 12 | 1 | 1 | 663 | 1 | 654 | 0.0 | 1294 |
| MS.gene34256.t1 | MTR_8g463650 | 96.780 | 559 | 9 | 1 | 1 | 559 | 1 | 550 | 0.0 | 1087 |
| MS.gene34256.t1 | MTR_8g463650 | 96.078 | 459 | 9 | 1 | 1 | 459 | 1 | 450 | 0.0 | 890 |
| MS.gene34256.t1 | MTR_8g463650 | 96.288 | 458 | 8 | 1 | 1 | 458 | 1 | 449 | 0.0 | 890 |
| MS.gene34256.t1 | MTR_1g111400 | 48.509 | 637 | 280 | 11 | 54 | 663 | 71 | 686 | 0.0 | 554 |
| MS.gene34256.t1 | MTR_1g111400 | 68.750 | 320 | 99 | 1 | 54 | 372 | 71 | 390 | 3.42e-155 | 457 |
| MS.gene34256.t1 | MTR_1g076810 | 52.923 | 325 | 141 | 3 | 67 | 389 | 329 | 643 | 9.74e-110 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34256.t1 | AT1G73170 | 63.322 | 608 | 201 | 7 | 62 | 663 | 75 | 666 | 0.0 | 728 |
| MS.gene34256.t1 | AT1G73170 | 63.123 | 602 | 200 | 7 | 62 | 657 | 75 | 660 | 0.0 | 718 |
| MS.gene34256.t1 | AT1G73170 | 63.636 | 539 | 174 | 7 | 131 | 663 | 16 | 538 | 0.0 | 641 |
| MS.gene34256.t1 | AT3G10420 | 49.038 | 624 | 254 | 13 | 66 | 661 | 95 | 682 | 0.0 | 559 |
| MS.gene34256.t1 | AT3G10420 | 54.025 | 472 | 184 | 7 | 66 | 524 | 95 | 546 | 1.62e-171 | 501 |
| MS.gene34256.t1 | AT1G73170 | 56.127 | 408 | 157 | 7 | 262 | 663 | 1 | 392 | 9.64e-136 | 404 |
| MS.gene34256.t1 | AT1G33290 | 53.354 | 328 | 139 | 4 | 65 | 389 | 43 | 359 | 5.05e-115 | 350 |
| MS.gene34256.t1 | AT1G33290 | 55.405 | 296 | 118 | 4 | 97 | 389 | 1 | 285 | 1.06e-108 | 331 |
| MS.gene34256.t1 | AT1G33290 | 55.114 | 176 | 75 | 2 | 65 | 237 | 43 | 217 | 4.48e-58 | 198 |
Find 170 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGACATCAGCTCTTTC+TGG | 0.094485 | 8.4:+46945860 | None:intergenic |
| TATTACCTTTGTCACATAAA+TGG | 0.152091 | 8.4:+46943746 | None:intergenic |
| GGGTCTTCTTTGTTGCTTAT+TGG | 0.180077 | 8.4:-46948976 | MS.gene34256:CDS |
| ACTGTGGATGCTATTCTTTC+AGG | 0.198781 | 8.4:-46946077 | MS.gene34256:CDS |
| GGTCTTCTTTGTTGCTTATT+GGG | 0.199941 | 8.4:-46948975 | MS.gene34256:CDS |
| CGCATCCTGCCATCCCATTA+TGG | 0.215129 | 8.4:-46941674 | MS.gene34256:CDS |
| ATTAACAGCCCTCTTGAAAA+TGG | 0.252129 | 8.4:-46945908 | MS.gene34256:CDS |
| CCGTTGGCTCGGTTTCCTTC+CGG | 0.254779 | 8.4:-46949219 | MS.gene34256:CDS |
| ATCGAAGTGGTTATGGATTT+AGG | 0.256066 | 8.4:-46949249 | MS.gene34256:CDS |
| CGTTGGCTCGGTTTCCTTCC+GGG | 0.267249 | 8.4:-46949218 | MS.gene34256:CDS |
| CGCAGCCATTGCTTCAAGTT+TGG | 0.281581 | 8.4:+46948708 | None:intergenic |
| TGCTAAATTGTTGCAAGATT+TGG | 0.284013 | 8.4:-46949007 | MS.gene34256:CDS |
| TTATGTTGCATATCAGAATT+AGG | 0.292765 | 8.4:+46948793 | None:intergenic |
| CGTGTTGGTAGAGCAATTTC+AGG | 0.295190 | 8.4:-46949033 | MS.gene34256:CDS |
| GGATGAGGCGGATGTTGAAC+TGG | 0.297926 | 8.4:-46949343 | MS.gene34256:CDS |
| GTGATTGTAATTGATGAAAT+TGG | 0.313403 | 8.4:-46948733 | MS.gene34256:CDS |
| AATCGGAAAGGCACAATTAT+TGG | 0.322543 | 8.4:-46949066 | MS.gene34256:CDS |
| TCGACAAGTTAGAGGATTCT+TGG | 0.326762 | 8.4:-46945805 | MS.gene34256:CDS |
| GTGATTCATCTTGCCTGGTT+TGG | 0.328198 | 8.4:+46945843 | None:intergenic |
| GCGTTTGCTGTCTCTATTGC+CGG | 0.328483 | 8.4:-46949319 | MS.gene34256:CDS |
| TCTTCATCTCAATCAACTTT+CGG | 0.330340 | 8.4:-46949490 | MS.gene34256:CDS |
| TCAAGAGGGCTGTTAATAAC+AGG | 0.345206 | 8.4:+46945914 | None:intergenic |
| GTTAACTACTCAGGCAATAA+AGG | 0.348187 | 8.4:+46941536 | None:intergenic |
| TCATGTCATCCGACCCATAA+TGG | 0.350137 | 8.4:+46941660 | None:intergenic |
| TTCGGAGAAGGCAGATGCTT+TGG | 0.364615 | 8.4:-46943547 | MS.gene34256:CDS |
| ATTACCTTTGTCACATAAAT+GGG | 0.366924 | 8.4:+46943747 | None:intergenic |
| GATGAAGCGTTTGGGTGATA+TGG | 0.374183 | 8.4:+46949458 | None:intergenic |
| GCATCCTGCCATCCCATTAT+GGG | 0.387057 | 8.4:-46941673 | MS.gene34256:CDS |
| TCTACTACCAAGGTCATATC+AGG | 0.388222 | 8.4:-46941780 | MS.gene34256:CDS |
| GTTGCCTATCGACAAGTTAG+AGG | 0.389073 | 8.4:-46945813 | MS.gene34256:CDS |
| ATCTCAATCAACTTTCGGTT+CGG | 0.392919 | 8.4:-46949485 | MS.gene34256:CDS |
| CTCATTTCAGGAGGCAAGAA+TGG | 0.393669 | 8.4:-46941843 | MS.gene34256:intron |
| CTACTACTGACCCGCAAAAC+GGG | 0.397718 | 8.4:+46949381 | None:intergenic |
| CATGTCATCCGACCCATAAT+GGG | 0.407525 | 8.4:+46941661 | None:intergenic |
| CAAAGGTGATTCATCTTGCC+TGG | 0.410302 | 8.4:+46945838 | None:intergenic |
| TTTCTCATCATCCTCCTCTT+CGG | 0.420671 | 8.4:-46949422 | MS.gene34256:CDS |
| CAGCTTGTTGCCACTGCTCA+TGG | 0.421615 | 8.4:-46948661 | MS.gene34256:CDS |
| TCCTCCGACAAGCATCTCTA+AGG | 0.423005 | 8.4:+46948606 | None:intergenic |
| GATATACCTCATGCTGGAAT+AGG | 0.423066 | 8.4:-46948838 | MS.gene34256:CDS |
| TGAATATCCTCAACAGTGAT+TGG | 0.424423 | 8.4:+46949174 | None:intergenic |
| ATCACCACCAATCTCATTAG+AGG | 0.425171 | 8.4:+46948864 | None:intergenic |
| CGACAAGTTAGAGGATTCTT+GGG | 0.427000 | 8.4:-46945804 | MS.gene34256:CDS |
| GATGTTGATCGAAGTGGTTA+TGG | 0.427730 | 8.4:-46949256 | MS.gene34256:CDS |
| GGGAATATCATGAGATTTGA+AGG | 0.432385 | 8.4:+46943767 | None:intergenic |
| TGCCGGAGGAGATGCGGAGG+CGG | 0.434542 | 8.4:-46949302 | MS.gene34256:CDS |
| CTTCTGAACACCCCTGCGGC+TGG | 0.435088 | 8.4:+46946193 | None:intergenic |
| TTACTAAGTGATTATGAAGA+TGG | 0.436078 | 8.4:-46943606 | MS.gene34256:CDS |
| TTGTTGCTTATTGGGCCTCC+AGG | 0.437743 | 8.4:-46948967 | MS.gene34256:CDS |
| TCGATCAACATCTGCACCTC+CGG | 0.448125 | 8.4:+46949267 | None:intergenic |
| TGTGGGGTGATGAAGCGTTT+GGG | 0.453774 | 8.4:+46949450 | None:intergenic |
| AACGGGAACCGTTCGATGTA+GGG | 0.455576 | 8.4:+46949398 | None:intergenic |
| GATGCTTGTCGGAGGAATAC+AGG | 0.455736 | 8.4:-46948599 | MS.gene34256:intron |
| AGATCCACAGGTTCTCCCTT+AGG | 0.456772 | 8.4:+46941800 | None:intergenic |
| TAGCATCCACAGTTGCTTCA+AGG | 0.456922 | 8.4:+46946087 | None:intergenic |
| TTAGAGGCAACTGTTATTCA+AGG | 0.457196 | 8.4:-46943906 | MS.gene34256:CDS |
| GGATAAGTGCTATTAGAAAT+CGG | 0.458559 | 8.4:-46949083 | MS.gene34256:CDS |
| GTGTGGGGTGATGAAGCGTT+TGG | 0.465133 | 8.4:+46949449 | None:intergenic |
| CTTCTTTAGCTTTGATTGCA+AGG | 0.467700 | 8.4:+46943809 | None:intergenic |
| GTCGATACCTCTAATGAGAT+TGG | 0.472826 | 8.4:-46948871 | MS.gene34256:CDS |
| AATTGATAAGATAAAAGATT+CGG | 0.476265 | 8.4:-46943565 | MS.gene34256:CDS |
| TAATTCTGATATGCAACATA+AGG | 0.478444 | 8.4:-46948791 | MS.gene34256:CDS |
| ACCCGCCTCCGCATCTCCTC+CGG | 0.481061 | 8.4:+46949300 | None:intergenic |
| TTGCAAGATTTGGTTCAAGA+TGG | 0.482249 | 8.4:-46948997 | MS.gene34256:CDS |
| TGAGCCATTGGAACTGCCAT+TGG | 0.493596 | 8.4:+46941580 | None:intergenic |
| CATGAGATTTGAAGGCAGCT+TGG | 0.494708 | 8.4:+46943775 | None:intergenic |
| TTATCCGACCGGTTTGGATG+AGG | 0.497048 | 8.4:-46949358 | MS.gene34256:CDS |
| TAATATTATCAGTCAATTGA+AGG | 0.498483 | 8.4:+46943853 | None:intergenic |
| ACTACTACTGACCCGCAAAA+CGG | 0.498767 | 8.4:+46949380 | None:intergenic |
| AAACGGGAACCGTTCGATGT+AGG | 0.503135 | 8.4:+46949397 | None:intergenic |
| TCAGGTAGTATCACTTCAGC+TGG | 0.503831 | 8.4:-46941762 | MS.gene34256:CDS |
| GCAACATAAGGTATTGATAG+AGG | 0.504051 | 8.4:-46948779 | MS.gene34256:CDS |
| GATGAGGCGGATGTTGAACT+GGG | 0.505829 | 8.4:-46949342 | MS.gene34256:CDS |
| TAGTAGTTATCCGACCGGTT+TGG | 0.505919 | 8.4:-46949364 | MS.gene34256:CDS |
| AACATCCGCCTCATCCAAAC+CGG | 0.506570 | 8.4:+46949350 | None:intergenic |
| GGAGAAGGCAGATGCTTTGG+AGG | 0.507376 | 8.4:-46943544 | MS.gene34256:intron |
| GAAGTTGTTCAGTGAGCCAT+TGG | 0.508518 | 8.4:+46941568 | None:intergenic |
| CCTTCCTTAGAGATGCTTGT+CGG | 0.509943 | 8.4:-46948610 | MS.gene34256:CDS |
| GAGATGAAGAGGCCAGCCGC+AGG | 0.510798 | 8.4:-46946205 | MS.gene34256:CDS |
| AGATGAAGATGAAGATGAAG+TGG | 0.510945 | 8.4:+46949504 | None:intergenic |
| ATCACTTAGTAATGCTCGTA+TGG | 0.512371 | 8.4:+46943617 | None:intergenic |
| GCCGGAGGAGATGCGGAGGC+GGG | 0.513333 | 8.4:-46949301 | MS.gene34256:CDS |
| TCCTCCAATGGCAGTTCCAA+TGG | 0.514933 | 8.4:-46941584 | MS.gene34256:CDS |
| TGCAAGATTTGGTTCAAGAT+GGG | 0.516388 | 8.4:-46948996 | MS.gene34256:CDS |
| CCGACCCATAATGGGATGGC+AGG | 0.518186 | 8.4:+46941669 | None:intergenic |
| TCCACTCTAGACAAGTTCGT+TGG | 0.523174 | 8.4:-46943655 | MS.gene34256:intron |
| AGAGCATGTAGTGATTCCTA+AGG | 0.524157 | 8.4:-46941816 | MS.gene34256:CDS |
| GAGGCGGGTGAGTGAGCATC+CGG | 0.526019 | 8.4:-46949286 | MS.gene34256:CDS |
| CAGGGAAATAGCTCGGATGC+TGG | 0.528836 | 8.4:-46948923 | MS.gene34256:CDS |
| CTCAACTGCACAACTAAATG+TGG | 0.529670 | 8.4:+46946145 | None:intergenic |
| CTTATTGGGCCTCCAGGTGT+AGG | 0.530531 | 8.4:-46948961 | MS.gene34256:CDS |
| CTCTATTGCCGGAGGAGATG+CGG | 0.530688 | 8.4:-46949308 | MS.gene34256:CDS |
| ATTGGTCTTACTTGTCGTGT+TGG | 0.531485 | 8.4:-46949048 | MS.gene34256:CDS |
| ATTGGAACTGCCATTGGAGG+AGG | 0.535160 | 8.4:+46941586 | None:intergenic |
| ACTGCACAACTAAATGTGGA+TGG | 0.536530 | 8.4:+46946149 | None:intergenic |
| GTTGGCTCGGTTTCCTTCCG+GGG | 0.537510 | 8.4:-46949217 | MS.gene34256:CDS |
| CTCTGATATAACAAAATCCC+CGG | 0.538114 | 8.4:+46949200 | None:intergenic |
| TAGGAAGGAAACCGTTGGCT+CGG | 0.538689 | 8.4:-46949230 | MS.gene34256:CDS |
| CGAGTACAATTGCACAGCGT+GGG | 0.539897 | 8.4:-46948687 | MS.gene34256:CDS |
| GACCTTGGTAGTAGATCCAC+AGG | 0.542220 | 8.4:+46941788 | None:intergenic |
| TTTGCTGTCGACAATCGAGC+AGG | 0.543380 | 8.4:-46949126 | MS.gene34256:CDS |
| TACTAAGTGATTATGAAGAT+GGG | 0.545344 | 8.4:-46943605 | MS.gene34256:CDS |
| GCCATTGGAACTGCCATTGG+AGG | 0.546516 | 8.4:+46941583 | None:intergenic |
| TATTCAGTATGCTACTGCTC+AGG | 0.546998 | 8.4:-46949157 | MS.gene34256:CDS |
| CCACAGTTGCTTCAAGGCTG+CGG | 0.548338 | 8.4:+46946093 | None:intergenic |
| AAGTGGTTATGGATTTAGGA+AGG | 0.551246 | 8.4:-46949245 | MS.gene34256:CDS |
| TAGAGGCAACTGTTATTCAA+GGG | 0.552419 | 8.4:-46943905 | MS.gene34256:CDS |
| GGGTGTTCAGAAGACAGTAC+TGG | 0.553635 | 8.4:-46946183 | MS.gene34256:CDS |
| CAGTATGCTACTGCTCAGGT+TGG | 0.554666 | 8.4:-46949153 | MS.gene34256:CDS |
| AGATGAAGATGAAGTGGAAG+TGG | 0.561414 | 8.4:+46949510 | None:intergenic |
| TAAAATGAAGTCTCAAGAGC+CGG | 0.561416 | 8.4:-46945957 | MS.gene34256:CDS |
| TCATCAATTACAATCACTTG+TGG | 0.564193 | 8.4:+46948739 | None:intergenic |
| AGAGAACATGTTAACTACTC+AGG | 0.566737 | 8.4:+46941527 | None:intergenic |
| TGGTACCAAACTTGAAGCAA+TGG | 0.569043 | 8.4:-46948713 | MS.gene34256:CDS |
| CGATGTAGGGACCGAAGAGG+AGG | 0.577122 | 8.4:+46949411 | None:intergenic |
| TGTGACACTCGGAGATGAAG+AGG | 0.577205 | 8.4:-46946216 | MS.gene34256:CDS |
| GATGAAGAGGCCAGCCGCAG+GGG | 0.581177 | 8.4:-46946203 | MS.gene34256:CDS |
| CTGCACAACTAAATGTGGAT+GGG | 0.583853 | 8.4:+46946150 | None:intergenic |
| GGATTTAGGAAGGAAACCGT+TGG | 0.583985 | 8.4:-46949235 | MS.gene34256:CDS |
| CCGACAAGCATCTCTAAGGA+AGG | 0.585042 | 8.4:+46948610 | None:intergenic |
| GTCAGTAGTAGTTATCCGAC+CGG | 0.587951 | 8.4:-46949369 | MS.gene34256:CDS |
| AGATGAAGAGGCCAGCCGCA+GGG | 0.590275 | 8.4:-46946204 | MS.gene34256:CDS |
| CGATCATCAGGGAAATAGCT+CGG | 0.590622 | 8.4:-46948930 | MS.gene34256:CDS |
| GAATCCTCTAACTTGTCGAT+AGG | 0.595648 | 8.4:+46945809 | None:intergenic |
| TCCGACCGGTTTGGATGAGG+CGG | 0.596107 | 8.4:-46949355 | MS.gene34256:CDS |
| GATACTACCTGATATGACCT+TGG | 0.596520 | 8.4:+46941773 | None:intergenic |
| GATGATGAGAAAAGATGTGT+GGG | 0.598303 | 8.4:+46949433 | None:intergenic |
| AGAGGCAACTGTTATTCAAG+GGG | 0.598583 | 8.4:-46943904 | MS.gene34256:CDS |
| TATTCCCATTTATGTGACAA+AGG | 0.600386 | 8.4:-46943751 | MS.gene34256:intron |
| GATGGTGATATACCTCATGC+TGG | 0.600726 | 8.4:-46948844 | MS.gene34256:CDS |
| GAGCATGTAGTGATTCCTAA+GGG | 0.603170 | 8.4:-46941815 | MS.gene34256:CDS |
| CCGTAACAAAATAGACGAAG+TGG | 0.607647 | 8.4:+46945770 | None:intergenic |
| CCGGAAGGAAACCGAGCCAA+CGG | 0.610121 | 8.4:+46949219 | None:intergenic |
| CCTGCCATCCCATTATGGGT+CGG | 0.610753 | 8.4:-46941669 | MS.gene34256:CDS |
| AACAGCCCTCTTGAAAATGG+TGG | 0.613001 | 8.4:-46945905 | MS.gene34256:CDS |
| TAAGATAAAAGATTCGGAGA+AGG | 0.614698 | 8.4:-46943559 | MS.gene34256:CDS |
| TCCTTAGAGATGCTTGTCGG+AGG | 0.617094 | 8.4:-46948607 | MS.gene34256:CDS |
| CTAGTTGATAGCTACGAACA+AGG | 0.617158 | 8.4:+46941738 | None:intergenic |
| TCTAATGAGATTGGTGGTGA+TGG | 0.617726 | 8.4:-46948862 | MS.gene34256:CDS |
| CCGCAGCCTTGAAGCAACTG+TGG | 0.618168 | 8.4:-46946093 | MS.gene34256:CDS |
| TCTTCGGTCCCTACATCGAA+CGG | 0.620973 | 8.4:-46949406 | MS.gene34256:CDS |
| ATTGACTGATAATATTAGTG+AGG | 0.621563 | 8.4:-46943847 | MS.gene34256:CDS |
| AAAGAGCTGATGTCCAAACC+AGG | 0.623407 | 8.4:-46945856 | MS.gene34256:CDS |
| GCGGGTGAGTGAGCATCCGG+AGG | 0.624763 | 8.4:-46949283 | MS.gene34256:CDS |
| GATTCCTAAGGGAGAACCTG+TGG | 0.626298 | 8.4:-46941804 | MS.gene34256:CDS |
| GATGAAGATGAAGTGGAAGT+GGG | 0.626760 | 8.4:+46949511 | None:intergenic |
| GTAGCTATCAACTAGAAGCA+AGG | 0.627614 | 8.4:-46941730 | MS.gene34256:CDS |
| TTGTCGATAGGCAACATCAA+AGG | 0.629330 | 8.4:+46945821 | None:intergenic |
| TTTGCTGTCTCTATTGCCGG+AGG | 0.631793 | 8.4:-46949316 | MS.gene34256:CDS |
| GATATAACAAAATCCCCGGA+AGG | 0.634335 | 8.4:+46949204 | None:intergenic |
| AAGACAGTACTGGAGAGGAA+AGG | 0.639051 | 8.4:-46946173 | MS.gene34256:CDS |
| TCATCCGACCCATAATGGGA+TGG | 0.641143 | 8.4:+46941665 | None:intergenic |
| GCGAGTACAATTGCACAGCG+TGG | 0.647247 | 8.4:-46948688 | MS.gene34256:CDS |
| GGTGCAGATGTTGATCGAAG+TGG | 0.648291 | 8.4:-46949262 | MS.gene34256:CDS |
| TCAATTTAGAGTGTGACACT+CGG | 0.648790 | 8.4:-46946227 | MS.gene34256:intron |
| ACAGTTGAAAATGAATGATG+CGG | 0.649292 | 8.4:-46943877 | MS.gene34256:CDS |
| TTCAGAAGACAGTACTGGAG+AGG | 0.649684 | 8.4:-46946178 | MS.gene34256:CDS |
| GCAGTACCTATTCCAGCATG+AGG | 0.651345 | 8.4:+46948832 | None:intergenic |
| AGAGTATCCAATCACTGTTG+AGG | 0.651684 | 8.4:-46949181 | MS.gene34256:CDS |
| TCCGCCTCATCCAAACCGGT+CGG | 0.657090 | 8.4:+46949354 | None:intergenic |
| AATTGTGATTCCATGAGCAG+TGG | 0.657323 | 8.4:+46948651 | None:intergenic |
| AACCTGTGGATCTACTACCA+AGG | 0.661137 | 8.4:-46941790 | MS.gene34256:CDS |
| AGTGCTATTAGAAATCGGAA+AGG | 0.666759 | 8.4:-46949078 | MS.gene34256:CDS |
| GGATGATGAGAAAAGATGTG+TGG | 0.669142 | 8.4:+46949432 | None:intergenic |
| TATTGCCGGAGGAGATGCGG+AGG | 0.670017 | 8.4:-46949305 | MS.gene34256:CDS |
| GAATCAGTAGAACATTGCAT+CGG | 0.670062 | 8.4:-46949104 | MS.gene34256:CDS |
| GATACCTCTAATGAGATTGG+TGG | 0.671807 | 8.4:-46948868 | MS.gene34256:CDS |
| GTTCGATGTAGGGACCGAAG+AGG | 0.696918 | 8.4:+46949408 | None:intergenic |
| ATGAGGCGGATGTTGAACTG+GGG | 0.733414 | 8.4:-46949341 | MS.gene34256:CDS |
| CTGTCTTCTGAACACCCCTG+CGG | 0.755967 | 8.4:+46946189 | None:intergenic |
| ATGATGAGAAAAGATGTGTG+GGG | 0.800838 | 8.4:+46949434 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 46941541 | 46949547 | 46941541 | ID=MS.gene34256 |
| chr8.4 | mRNA | 46941541 | 46949547 | 46941541 | ID=MS.gene34256.t1;Parent=MS.gene34256 |
| chr8.4 | exon | 46948600 | 46949547 | 46948600 | ID=MS.gene34256.t1.exon1;Parent=MS.gene34256.t1 |
| chr8.4 | CDS | 46948600 | 46949547 | 46948600 | ID=cds.MS.gene34256.t1;Parent=MS.gene34256.t1 |
| chr8.4 | exon | 46946074 | 46946240 | 46946074 | ID=MS.gene34256.t1.exon2;Parent=MS.gene34256.t1 |
| chr8.4 | CDS | 46946074 | 46946240 | 46946074 | ID=cds.MS.gene34256.t1;Parent=MS.gene34256.t1 |
| chr8.4 | exon | 46945769 | 46946027 | 46945769 | ID=MS.gene34256.t1.exon3;Parent=MS.gene34256.t1 |
| chr8.4 | CDS | 46945769 | 46946027 | 46945769 | ID=cds.MS.gene34256.t1;Parent=MS.gene34256.t1 |
| chr8.4 | exon | 46943752 | 46943931 | 46943752 | ID=MS.gene34256.t1.exon4;Parent=MS.gene34256.t1 |
| chr8.4 | CDS | 46943752 | 46943931 | 46943752 | ID=cds.MS.gene34256.t1;Parent=MS.gene34256.t1 |
| chr8.4 | exon | 46943545 | 46943667 | 46943545 | ID=MS.gene34256.t1.exon5;Parent=MS.gene34256.t1 |
| chr8.4 | CDS | 46943545 | 46943667 | 46943545 | ID=cds.MS.gene34256.t1;Parent=MS.gene34256.t1 |
| chr8.4 | exon | 46941541 | 46941855 | 46941541 | ID=MS.gene34256.t1.exon6;Parent=MS.gene34256.t1 |
| chr8.4 | CDS | 46941541 | 46941855 | 46941541 | ID=cds.MS.gene34256.t1;Parent=MS.gene34256.t1 |
| Gene Sequence |
| Protein sequence |
