Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34350.t1 | XP_013454502.1 | 83.8 | 480 | 5 | 2 | 1 | 409 | 1 | 478 | 1.70E-191 | 678.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34350.t1 | Q9FZ45 | 59.4 | 483 | 113 | 4 | 1 | 409 | 1 | 474 | 1.5e-132 | 474.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34350.t1 | A0A072UHD8 | 83.8 | 480 | 5 | 2 | 1 | 409 | 1 | 478 | 1.2e-191 | 678.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051067 | MS.gene34350 | 0.860812 | 1.59E-63 | -1.69E-46 |
| MS.gene053281 | MS.gene34350 | 0.876836 | 1.02E-68 | -1.69E-46 |
| MS.gene053283 | MS.gene34350 | 0.90298 | 5.56E-79 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34350.t1 | MTR_4g005510 | 98.563 | 348 | 3 | 1 | 1 | 348 | 1 | 346 | 0.0 | 689 |
| MS.gene34350.t1 | MTR_4g005510 | 100.000 | 61 | 0 | 0 | 349 | 409 | 418 | 478 | 1.53e-34 | 134 |
| MS.gene34350.t1 | MTR_4g007930 | 77.119 | 354 | 72 | 3 | 1 | 346 | 1 | 353 | 0.0 | 541 |
| MS.gene34350.t1 | MTR_4g007930 | 91.803 | 61 | 5 | 0 | 349 | 409 | 427 | 487 | 6.75e-31 | 124 |
| MS.gene34350.t1 | MTR_4g007930 | 65.537 | 354 | 62 | 5 | 1 | 346 | 1 | 302 | 7.05e-149 | 429 |
| MS.gene34350.t1 | MTR_2g025190 | 43.626 | 353 | 137 | 10 | 1 | 348 | 1 | 296 | 4.93e-76 | 243 |
| MS.gene34350.t1 | MTR_2g025190 | 40.741 | 162 | 67 | 6 | 258 | 409 | 286 | 428 | 5.39e-22 | 97.8 |
| MS.gene34350.t1 | MTR_4g094505 | 100.000 | 33 | 0 | 0 | 349 | 381 | 111 | 143 | 2.77e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34350.t1 | AT1G16860 | 73.088 | 353 | 79 | 6 | 1 | 348 | 1 | 342 | 6.16e-177 | 502 |
| MS.gene34350.t1 | AT1G16860 | 42.484 | 153 | 77 | 4 | 258 | 409 | 332 | 474 | 1.12e-23 | 103 |
| MS.gene34350.t1 | AT1G78880 | 72.238 | 353 | 76 | 7 | 1 | 348 | 1 | 336 | 4.81e-173 | 492 |
| MS.gene34350.t1 | AT1G78880 | 43.137 | 153 | 76 | 3 | 258 | 409 | 326 | 468 | 8.70e-25 | 106 |
| MS.gene34350.t1 | AT4G22290 | 44.000 | 350 | 157 | 8 | 1 | 348 | 1 | 313 | 1.46e-75 | 242 |
| MS.gene34350.t1 | AT4G22290 | 38.272 | 162 | 71 | 6 | 258 | 409 | 303 | 445 | 2.42e-19 | 90.1 |
Find 116 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACAGTTTGTGAAGGTTTC+TGG | 0.153440 | 4.3:+89028788 | MS.gene34350:CDS |
| CTTGAAGGAGCGTTGTTTAA+TGG | 0.228567 | 4.3:-89028125 | None:intergenic |
| ATCAAGAAGTCAGGAGAATT+AGG | 0.233497 | 4.3:+89028053 | MS.gene34350:CDS |
| GTCCTTTCTTTCGGCTGTTC+AGG | 0.252687 | 4.3:-89027987 | None:intergenic |
| CTTCACAAACTGTCCATTCT+TGG | 0.261830 | 4.3:-89028780 | None:intergenic |
| GGGGCTCCAAGGAAGGTTTC+TGG | 0.291580 | 4.3:+89028428 | MS.gene34350:CDS |
| TTGATGTCACCGCCGGTATA+AGG | 0.304998 | 4.3:-89028035 | None:intergenic |
| TCAAGGACTGGATCGTTTGC+AGG | 0.330635 | 4.3:+89028143 | MS.gene34350:CDS |
| TCTGGCCCGCTGAATTCATC+TGG | 0.342002 | 4.3:+89028407 | MS.gene34350:CDS |
| GGTTCCAAATCTAGAAAATC+TGG | 0.360653 | 4.3:+89028101 | MS.gene34350:CDS |
| AAACCAGTTGTTGGAAGAAC+TGG | 0.362727 | 4.3:-89028377 | None:intergenic |
| TTCGTTATGGGATTCATTGC+TGG | 0.377574 | 4.3:+89028599 | MS.gene34350:CDS |
| ACAGACCACAATATTGGCTT+TGG | 0.378088 | 4.3:-89028566 | None:intergenic |
| GAGGTATTGGACCCGAGTTT+TGG | 0.382636 | 4.3:-89028355 | None:intergenic |
| GTTGGAAGAACTGGAGGTAT+TGG | 0.387217 | 4.3:-89028368 | None:intergenic |
| TCTGGTCCATTAGAGTCCTT+AGG | 0.387635 | 4.3:+89028446 | MS.gene34350:CDS |
| ATTGACCCTAAGGACTCTAA+TGG | 0.391975 | 4.3:-89028452 | None:intergenic |
| TACTACAACAATAAGGAGTA+TGG | 0.395337 | 4.3:-89028651 | None:intergenic |
| GGTAGCACGGTTAGCGTAAT+GGG | 0.397403 | 4.3:+89031665 | MS.gene34350:CDS |
| AGAATCACAGACCACAATAT+TGG | 0.401174 | 4.3:-89028572 | None:intergenic |
| ATTGTTGGAGTCCTTTCTTT+CGG | 0.401281 | 4.3:-89027996 | None:intergenic |
| CCTCCAGTTCTTCCAACAAC+TGG | 0.402248 | 4.3:+89028374 | MS.gene34350:CDS |
| GACAGTTTGTGAAGGTTTCT+GGG | 0.407064 | 4.3:+89028789 | MS.gene34350:CDS |
| GATGTAATCAAACCAGTTGT+TGG | 0.409587 | 4.3:-89028386 | None:intergenic |
| ATCTCAAAACAATACCTTCA+AGG | 0.409889 | 4.3:-89031784 | None:intergenic |
| GTTGAATAAACACGGGGAAC+CGG | 0.414266 | 4.3:+89028292 | MS.gene34350:CDS |
| GCAAAACGCAGCAGCTCGTT+CGG | 0.414432 | 4.3:+89028193 | MS.gene34350:CDS |
| AAAGAATTACTACAACAATA+AGG | 0.422326 | 4.3:-89028658 | None:intergenic |
| ACAACTGGTTTGATTACATC+TGG | 0.434300 | 4.3:+89028389 | MS.gene34350:CDS |
| GCTGTCCTCAGCTCTGCATC+AGG | 0.437236 | 4.3:-89028758 | None:intergenic |
| CGGTGGCGGCATTATTCACT+TGG | 0.440693 | 4.3:+89028687 | MS.gene34350:CDS |
| GGACCAGAGGACTTCTTAAC+CGG | 0.441130 | 4.3:-89028311 | None:intergenic |
| TGGATGATGAATATTCCTTC+AGG | 0.443248 | 4.3:+89028534 | MS.gene34350:CDS |
| ACAATACCTTCAAGGCTAGC+TGG | 0.445053 | 4.3:-89031776 | None:intergenic |
| CTGGTCCATTAGAGTCCTTA+GGG | 0.448812 | 4.3:+89028447 | MS.gene34350:CDS |
| AAGTCCTCTGGTCCTCAATC+AGG | 0.449552 | 4.3:+89028320 | MS.gene34350:CDS |
| CAGACCACAATATTGGCTTT+GGG | 0.455761 | 4.3:-89028565 | None:intergenic |
| GCAGGCGCTGCTTCGCACTC+TGG | 0.461695 | 4.3:+89028161 | MS.gene34350:CDS |
| TCAAGAAGTCAGGAGAATTA+GGG | 0.462102 | 4.3:+89028054 | MS.gene34350:CDS |
| CCTCCTGAGCCTTTGACGAC+CGG | 0.462807 | 4.3:+89031728 | MS.gene34350:CDS |
| AACGAAGTCCCCAGGTAAAA+CGG | 0.463388 | 4.3:-89029178 | None:intergenic |
| GCAAACGATCCAGTCCTTGA+AGG | 0.463630 | 4.3:-89028140 | None:intergenic |
| CATCCGGTCGTCAAAGGCTC+AGG | 0.463709 | 4.3:-89031731 | None:intergenic |
| CTGGCCCGCTGAATTCATCT+GGG | 0.463840 | 4.3:+89028408 | MS.gene34350:CDS |
| CGTGGAAGGAAAGCTATTGT+TGG | 0.472794 | 4.3:+89028719 | MS.gene34350:CDS |
| TGGTGGCACACGCCAAAACT+CGG | 0.478089 | 4.3:+89028343 | MS.gene34350:CDS |
| CATTAAACAACGCTCCTTCA+AGG | 0.481983 | 4.3:+89028126 | MS.gene34350:CDS |
| CGTTCGGCTTATGTCACATC+AGG | 0.483108 | 4.3:+89028209 | MS.gene34350:CDS |
| ACTAGCTTGTATGAATATAG+AGG | 0.487035 | 4.3:+89029122 | MS.gene34350:CDS |
| ATTTGATTTCATTGACCCTA+AGG | 0.487683 | 4.3:-89028462 | None:intergenic |
| ATGTTTGATATTCCTATGGA+TGG | 0.490543 | 4.3:+89028080 | MS.gene34350:CDS |
| AGGTAGCACGGTTAGCGTAA+TGG | 0.490906 | 4.3:+89031664 | MS.gene34350:CDS |
| CACTGGCATCCGGTCGTCAA+AGG | 0.491248 | 4.3:-89031737 | None:intergenic |
| ACATTTCGCCCACTGGCATC+CGG | 0.492145 | 4.3:-89031747 | None:intergenic |
| AATGGACCAGAAACCTTCCT+TGG | 0.496121 | 4.3:-89028434 | None:intergenic |
| GTCGTCAAAGGCTCAGGAGG+AGG | 0.497151 | 4.3:-89031725 | None:intergenic |
| GAAAATGTTTGATATTCCTA+TGG | 0.498329 | 4.3:+89028076 | MS.gene34350:CDS |
| CTACTTCAGCCTCAATGAAA+AGG | 0.499132 | 4.3:+89028255 | MS.gene34350:CDS |
| ATGGCAACTGAGCTCATTGT+TGG | 0.505538 | 4.3:-89028011 | None:intergenic |
| GGCGGTGACATCAAGAAGTC+AGG | 0.506595 | 4.3:+89028044 | MS.gene34350:CDS |
| GTGGATGTATATACACATCT+TGG | 0.506836 | 4.3:-89029101 | None:intergenic |
| CTTTGGGAAGTTCTTCCTGA+AGG | 0.511332 | 4.3:-89028549 | None:intergenic |
| TCAGGTAATCTATCTGCTGC+AGG | 0.515107 | 4.3:+89028227 | MS.gene34350:CDS |
| GTCCTGAACAGCCGAAAGAA+AGG | 0.519111 | 4.3:+89027985 | MS.gene34350:CDS |
| TCTGGTCCTCAATCAGGTGG+TGG | 0.523811 | 4.3:+89028326 | MS.gene34350:CDS |
| GAGCTGAGGACAGCCAAGAA+TGG | 0.527974 | 4.3:+89028767 | MS.gene34350:CDS |
| AGCAATGGCCTGTATGTATC+GGG | 0.528003 | 4.3:+89027960 | MS.gene34350:CDS |
| TCAGTTGCCATGCCTTATAC+CGG | 0.528246 | 4.3:+89028023 | MS.gene34350:CDS |
| GAACCGGTTAAGAAGTCCTC+TGG | 0.529575 | 4.3:+89028308 | MS.gene34350:CDS |
| CCATTGCTTAGCTGATGAGA+TGG | 0.532954 | 4.3:-89027945 | None:intergenic |
| AAGCAATGGCCTGTATGTAT+CGG | 0.538649 | 4.3:+89027959 | MS.gene34350:CDS |
| TTCATCTGGGGCTCCAAGGA+AGG | 0.539779 | 4.3:+89028421 | MS.gene34350:CDS |
| GAGCCCCAGATGAATTCAGC+GGG | 0.540465 | 4.3:-89028412 | None:intergenic |
| GCTTGTATGAATATAGAGGA+TGG | 0.540592 | 4.3:+89029126 | MS.gene34350:CDS |
| CTAGATTTGGAACCATCCAT+AGG | 0.546115 | 4.3:-89028092 | None:intergenic |
| AGATATCAGTGATGGGTTCG+AGG | 0.547275 | 4.3:+89027919 | None:intergenic |
| CTTGGAATAGTTGTCGTGGA+AGG | 0.550581 | 4.3:+89028705 | MS.gene34350:CDS |
| AACAACGCTCCTTCAAGGAC+TGG | 0.554039 | 4.3:+89028131 | MS.gene34350:CDS |
| CAGGACGGCCCGATACATAC+AGG | 0.557100 | 4.3:-89027968 | None:intergenic |
| TCTATATTCATACAAGCTAG+TGG | 0.559080 | 4.3:-89029120 | None:intergenic |
| CTCAGTTGAACGAAGTCCCC+AGG | 0.559128 | 4.3:-89029186 | None:intergenic |
| TGAATTCATCTGGGGCTCCA+AGG | 0.561974 | 4.3:+89028417 | MS.gene34350:CDS |
| TCCTCTGGTCCTCAATCAGG+TGG | 0.562994 | 4.3:+89028323 | MS.gene34350:CDS |
| CATTGCTTAGCTGATGAGAT+GGG | 0.563787 | 4.3:-89027944 | None:intergenic |
| ACACTGAGAGTAGTCACAGC+TGG | 0.564624 | 4.3:-89028512 | None:intergenic |
| CAAGAATGGACAGTTTGTGA+AGG | 0.570520 | 4.3:+89028781 | MS.gene34350:CDS |
| TTTCTTTCGGCTGTTCAGGA+CGG | 0.577953 | 4.3:-89027983 | None:intergenic |
| CCGGTCGTCAAAGGCTCAGG+AGG | 0.581282 | 4.3:-89031728 | None:intergenic |
| CTTGTATGAATATAGAGGAT+GGG | 0.582610 | 4.3:+89029127 | MS.gene34350:CDS |
| GGTGGCACACGCCAAAACTC+GGG | 0.583014 | 4.3:+89028344 | MS.gene34350:CDS |
| CTCTAATGGAACATTGCCGC+AGG | 0.583097 | 4.3:-89029060 | None:intergenic |
| TTCACTTGGAATAGTTGTCG+TGG | 0.586701 | 4.3:+89028701 | MS.gene34350:CDS |
| GGTTCCCCGTGTTTATTCAA+CGG | 0.589761 | 4.3:-89028290 | None:intergenic |
| CTTTGACGACCGGATGCCAG+TGG | 0.590601 | 4.3:+89031738 | MS.gene34350:CDS |
| TGACTTCTTGATGTCACCGC+CGG | 0.591147 | 4.3:-89028042 | None:intergenic |
| GTTATGGGATTCATTGCTGG+AGG | 0.597123 | 4.3:+89028602 | MS.gene34350:CDS |
| TCAATGAAAAGGACAAACTC+AGG | 0.614891 | 4.3:+89028266 | MS.gene34350:CDS |
| GTCACCGCCGGTATAAGGCA+TGG | 0.615654 | 4.3:-89028030 | None:intergenic |
| GGAGCCCCAGATGAATTCAG+CGG | 0.619447 | 4.3:-89028413 | None:intergenic |
| CCATCTCATCAGCTAAGCAA+TGG | 0.621590 | 4.3:+89027945 | MS.gene34350:CDS |
| CAGGTCCGTTGAATAAACAC+GGG | 0.631654 | 4.3:+89028285 | MS.gene34350:CDS |
| CCAGTTGTTGGAAGAACTGG+AGG | 0.633647 | 4.3:-89028374 | None:intergenic |
| ACCACCTGATTGAGGACCAG+AGG | 0.634928 | 4.3:-89028324 | None:intergenic |
| ACAGTTTGTGAAGGTTTCTG+GGG | 0.638708 | 4.3:+89028790 | MS.gene34350:CDS |
| TCAGGTCCGTTGAATAAACA+CGG | 0.649376 | 4.3:+89028284 | MS.gene34350:CDS |
| AATATCCTGATGCAGAGCTG+AGG | 0.654877 | 4.3:+89028753 | MS.gene34350:CDS |
| TGGCCCGCTGAATTCATCTG+GGG | 0.657399 | 4.3:+89028409 | MS.gene34350:CDS |
| GGTACATAAAGAAGGTAGCA+CGG | 0.658421 | 4.3:+89031652 | MS.gene34350:intron |
| TTTGACGACCGGATGCCAGT+GGG | 0.664024 | 4.3:+89031739 | MS.gene34350:CDS |
| GTTGCCATGCCTTATACCGG+CGG | 0.664295 | 4.3:+89028026 | MS.gene34350:CDS |
| CTGGGGACTTCGTTCAACTG+AGG | 0.664974 | 4.3:+89029187 | MS.gene34350:CDS |
| ACTTCCCAAAGCCAATATTG+TGG | 0.667244 | 4.3:+89028561 | MS.gene34350:CDS |
| CAATAAGGAGTATGGCATTG+CGG | 0.670570 | 4.3:-89028643 | None:intergenic |
| CGTGTGCCACCACCTGATTG+AGG | 0.677788 | 4.3:-89028332 | None:intergenic |
| AGCTGTGACTACTCTCAGTG+TGG | 0.690771 | 4.3:+89028514 | MS.gene34350:CDS |
| AGGTCCGTTGAATAAACACG+GGG | 0.753684 | 4.3:+89028286 | MS.gene34350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTTCTTTCAAATAA+AGG | - | chr4.3:89030953-89030972 | None:intergenic | 10.0% |
| !! | AACTTATATACAATGAATTT+GGG | + | chr4.3:89029475-89029494 | MS.gene34350:intron | 15.0% |
| !! | TAACTTATATACAATGAATT+TGG | + | chr4.3:89029474-89029493 | MS.gene34350:intron | 15.0% |
| !! | TCTATCTTATATCTATTAAA+AGG | + | chr4.3:89030883-89030902 | MS.gene34350:intron | 15.0% |
| !!! | ATAATTATTTCTTTCTTGTT+TGG | + | chr4.3:89030829-89030848 | MS.gene34350:intron | 15.0% |
| !!! | CACATTAGTATATTTTAAAT+AGG | + | chr4.3:89030675-89030694 | MS.gene34350:intron | 15.0% |
| !!! | TAATTATTTCTTTCTTGTTT+GGG | + | chr4.3:89030830-89030849 | MS.gene34350:intron | 15.0% |
| !! | AAAGAATTACTACAACAATA+AGG | - | chr4.3:89028661-89028680 | None:intergenic | 20.0% |
| !! | AAATATATAATTCACATCCA+TGG | - | chr4.3:89029302-89029321 | None:intergenic | 20.0% |
| !! | ATATAAGATAGATGATGTTA+TGG | - | chr4.3:89030875-89030894 | None:intergenic | 20.0% |
| !! | CAAAAGTTAGAATATATCAA+TGG | - | chr4.3:89029030-89029049 | None:intergenic | 20.0% |
| !! | TAGATTATACCATGTAATTA+GGG | - | chr4.3:89029456-89029475 | None:intergenic | 20.0% |
| !! | TCTGCATTGAATAAAAATTA+AGG | - | chr4.3:89031335-89031354 | None:intergenic | 20.0% |
| !! | TTAATTTAATGTGAAGTTTG+AGG | - | chr4.3:89030742-89030761 | None:intergenic | 20.0% |
| !! | TTAGATTATACCATGTAATT+AGG | - | chr4.3:89029457-89029476 | None:intergenic | 20.0% |
| !!! | AATATTTTCTCATTGATTTC+AGG | + | chr4.3:89029578-89029597 | MS.gene34350:intron | 20.0% |
| !!! | ATATTTTCTCATTGATTTCA+GGG | + | chr4.3:89029579-89029598 | MS.gene34350:intron | 20.0% |
| !!! | TATTTTAAATAGGAACAACA+CGG | + | chr4.3:89030685-89030704 | MS.gene34350:intron | 20.0% |
| !!! | TGATATATTCTAACTTTTGA+AGG | + | chr4.3:89029031-89029050 | MS.gene34350:intron | 20.0% |
| !!! | TTTTCAATGCAACTTATAAA+TGG | - | chr4.3:89030201-89030220 | None:intergenic | 20.0% |
| ! | AAATGAAGTTCTTATGAAAG+TGG | + | chr4.3:89031610-89031629 | MS.gene34350:intron | 25.0% |
| ! | AAGTTTCAATGCAATGAATT+TGG | - | chr4.3:89030144-89030163 | None:intergenic | 25.0% |
| ! | ACTTAATTTCCCTAATTACA+TGG | + | chr4.3:89029444-89029463 | MS.gene34350:intron | 25.0% |
| ! | ACTTGATTACATATTCTACA+TGG | + | chr4.3:89029545-89029564 | MS.gene34350:intron | 25.0% |
| ! | CCAACAACAATATTTAAACT+AGG | + | chr4.3:89030387-89030406 | MS.gene34350:intron | 25.0% |
| ! | CCTAGTTTAAATATTGTTGT+TGG | - | chr4.3:89030390-89030409 | None:intergenic | 25.0% |
| ! | CTTGATTACATATTCTACAT+GGG | + | chr4.3:89029546-89029565 | MS.gene34350:intron | 25.0% |
| ! | GAAAATGTTTGATATTCCTA+TGG | + | chr4.3:89028076-89028095 | MS.gene34350:CDS | 25.0% |
| ! | GATTCAAATCTCATTTAATG+TGG | + | chr4.3:89031221-89031240 | MS.gene34350:intron | 25.0% |
| ! | TCCAATCAATACTTTCATAA+AGG | - | chr4.3:89031203-89031222 | None:intergenic | 25.0% |
| ! | TTCAAATCATGAATGATTGA+TGG | + | chr4.3:89028997-89029016 | MS.gene34350:intron | 25.0% |
| ! | TTTCTTTCAATCTACAGTAA+GGG | - | chr4.3:89030256-89030275 | None:intergenic | 25.0% |
| !! | AGAATGCAAATTGCATATTT+TGG | + | chr4.3:89031262-89031281 | MS.gene34350:intron | 25.0% |
| !! | ATACCATCATAGAATTTGTT+TGG | + | chr4.3:89029728-89029747 | MS.gene34350:intron | 25.0% |
| !! | GAATGCAAATTGCATATTTT+GGG | + | chr4.3:89031263-89031282 | MS.gene34350:intron | 25.0% |
| !! | GTGTCTATGATGTAATTTTA+TGG | - | chr4.3:89029391-89029410 | None:intergenic | 25.0% |
| !! | TACCATCATAGAATTTGTTT+GGG | + | chr4.3:89029729-89029748 | MS.gene34350:intron | 25.0% |
| !! | TTAACACTGTTTCTTCTTTA+GGG | - | chr4.3:89030119-89030138 | None:intergenic | 25.0% |
| !! | TTGCAAGTTTTCAAAAAAGA+TGG | + | chr4.3:89030983-89031002 | MS.gene34350:intron | 25.0% |
| !! | TTTAACACTGTTTCTTCTTT+AGG | - | chr4.3:89030120-89030139 | None:intergenic | 25.0% |
| !! | TTTTTGTAGGTACATAAAGA+AGG | + | chr4.3:89031644-89031663 | MS.gene34350:intron | 25.0% |
| !!! | TATATTCTAACTTTTGAAGG+TGG | + | chr4.3:89029034-89029053 | MS.gene34350:intron | 25.0% |
| !!! | TCCTTTATGAAAGTATTGAT+TGG | + | chr4.3:89031199-89031218 | MS.gene34350:intron | 25.0% |
| AAAATACAGTCAACAATGTG+TGG | - | chr4.3:89028904-89028923 | None:intergenic | 30.0% | |
| AAGTAAGTGCTTATAAAGGT+TGG | - | chr4.3:89029804-89029823 | None:intergenic | 30.0% | |
| ACCTTTATAAGCACTTACTT+AGG | + | chr4.3:89029804-89029823 | MS.gene34350:intron | 30.0% | |
| ACTGGTAAGAGATAATCAAA+AGG | + | chr4.3:89029355-89029374 | MS.gene34350:intron | 30.0% | |
| AGTAAGTGCTTATAAAGGTT+GGG | - | chr4.3:89029803-89029822 | None:intergenic | 30.0% | |
| ATAAAGGCTAGATAGAAACT+AGG | - | chr4.3:89030937-89030956 | None:intergenic | 30.0% | |
| ATCAAGAATAGTCCCTTATT+AGG | + | chr4.3:89031095-89031114 | MS.gene34350:intron | 30.0% | |
| ATCTCAAAACAATACCTTCA+AGG | - | chr4.3:89031787-89031806 | None:intergenic | 30.0% | |
| ATCTTACAAACCAACTTTGT+AGG | - | chr4.3:89029772-89029791 | None:intergenic | 30.0% | |
| ATGCAACTTATAAATGGTAG+AGG | - | chr4.3:89030195-89030214 | None:intergenic | 30.0% | |
| ATGTTTGATATTCCTATGGA+TGG | + | chr4.3:89028080-89028099 | MS.gene34350:CDS | 30.0% | |
| CATTGAAAACTAAGATTTCC+TGG | + | chr4.3:89030212-89030231 | MS.gene34350:intron | 30.0% | |
| CATTGTCCATACAATTAGTA+AGG | - | chr4.3:89029501-89029520 | None:intergenic | 30.0% | |
| CCTTAATGGCAGTTAATTAA+GGG | - | chr4.3:89029628-89029647 | None:intergenic | 30.0% | |
| CTGGTAAGAGATAATCAAAA+GGG | + | chr4.3:89029356-89029375 | MS.gene34350:intron | 30.0% | |
| CTTGTATGAATATAGAGGAT+GGG | + | chr4.3:89029127-89029146 | MS.gene34350:CDS | 30.0% | |
| GTATCATGCAGTTAAAAGAA+GGG | + | chr4.3:89031543-89031562 | MS.gene34350:intron | 30.0% | |
| GTTTCTTTCAATCTACAGTA+AGG | - | chr4.3:89030257-89030276 | None:intergenic | 30.0% | |
| TAAAGGCTAGATAGAAACTA+GGG | - | chr4.3:89030936-89030955 | None:intergenic | 30.0% | |
| TACTACAACAATAAGGAGTA+TGG | - | chr4.3:89028654-89028673 | None:intergenic | 30.0% | |
| TCAAGATTCTTTATTCATCC+AGG | - | chr4.3:89030233-89030252 | None:intergenic | 30.0% | |
| TCTATATTCATACAAGCTAG+TGG | - | chr4.3:89029123-89029142 | None:intergenic | 30.0% | |
| TCTTACAAACCAACTTTGTA+GGG | - | chr4.3:89029771-89029790 | None:intergenic | 30.0% | |
| TGCAATTTGCATTCTGATAT+AGG | - | chr4.3:89031257-89031276 | None:intergenic | 30.0% | |
| TGTCGAGTTCAAATAAAACT+TGG | - | chr4.3:89029250-89029269 | None:intergenic | 30.0% | |
| TTAATTAACTGCCATTAAGG+CGG | + | chr4.3:89029628-89029647 | MS.gene34350:intron | 30.0% | |
| ! | AATGATTTTCCAACACAAGT+GGG | + | chr4.3:89030481-89030500 | MS.gene34350:intron | 30.0% |
| ! | ACATCTTGGAACTTTTTGAA+AGG | - | chr4.3:89029090-89029109 | None:intergenic | 30.0% |
| ! | ACTAGCTTGTATGAATATAG+AGG | + | chr4.3:89029122-89029141 | MS.gene34350:CDS | 30.0% |
| ! | ACTTCTTTCTTTCTTTTGAC+GGG | + | chr4.3:89031037-89031056 | MS.gene34350:intron | 30.0% |
| ! | ATGGACAATGTATCTAGAAT+AGG | + | chr4.3:89029695-89029714 | MS.gene34350:intron | 30.0% |
| ! | ATTTGATTTCATTGACCCTA+AGG | - | chr4.3:89028465-89028484 | None:intergenic | 30.0% |
| ! | CACTTCTTTCTTTCTTTTGA+CGG | + | chr4.3:89031036-89031055 | MS.gene34350:intron | 30.0% |
| ! | GTATTTTTCTCATTCATCCA+TGG | + | chr4.3:89028917-89028936 | MS.gene34350:intron | 30.0% |
| ! | GTGATTCTCATTTTCGTTAT+GGG | + | chr4.3:89028587-89028606 | MS.gene34350:CDS | 30.0% |
| ! | TGTAGTAATTCTTTTTGCTG+CGG | + | chr4.3:89028667-89028686 | MS.gene34350:CDS | 30.0% |
| ! | TGTGATTCTCATTTTCGTTA+TGG | + | chr4.3:89028586-89028605 | MS.gene34350:CDS | 30.0% |
| ! | TTCATTTTGTGCCAGAAAAT+TGG | - | chr4.3:89030310-89030329 | None:intergenic | 30.0% |
| !! | TCTTCTTTAGGGCTAATAAT+TGG | - | chr4.3:89030108-89030127 | None:intergenic | 30.0% |
| !! | TGTAATTTGCTTATGTGAAC+TGG | + | chr4.3:89029337-89029356 | MS.gene34350:intron | 30.0% |
| !!! | AATTGCATATTTTGGGACTT+TGG | + | chr4.3:89031270-89031289 | MS.gene34350:intron | 30.0% |
| !!! | TAAGTTTTTCAGGTGTGTAA+AGG | + | chr4.3:89030510-89030529 | MS.gene34350:intron | 30.0% |
| AACTTTCATCGAAGATGAGA+TGG | + | chr4.3:89030602-89030621 | MS.gene34350:intron | 35.0% | |
| AGAATCACAGACCACAATAT+TGG | - | chr4.3:89028575-89028594 | None:intergenic | 35.0% | |
| AGCCCAAACAAATTCTATGA+TGG | - | chr4.3:89029734-89029753 | None:intergenic | 35.0% | |
| ATAGCAAACATCAGAATGGT+TGG | + | chr4.3:89030047-89030066 | MS.gene34350:intron | 35.0% | |
| ATATCTTCACTATGTCGTAG+TGG | - | chr4.3:89030000-89030019 | None:intergenic | 35.0% | |
| ATCAAGAAGTCAGGAGAATT+AGG | + | chr4.3:89028053-89028072 | MS.gene34350:CDS | 35.0% | |
| ATTGTTGGAGTCCTTTCTTT+CGG | - | chr4.3:89027999-89028018 | None:intergenic | 35.0% | |
| CACTTGTGTTGGAAAATCAT+TGG | - | chr4.3:89030482-89030501 | None:intergenic | 35.0% | |
| CATATAAGCATCTTCTAACG+CGG | + | chr4.3:89030362-89030381 | MS.gene34350:intron | 35.0% | |
| CCACTTTATGAACTAATCCA+TGG | - | chr4.3:89028937-89028956 | None:intergenic | 35.0% | |
| CCCTTAATTAACTGCCATTA+AGG | + | chr4.3:89029625-89029644 | MS.gene34350:intron | 35.0% | |
| CGGATTGACATCAATTACAA+CGG | - | chr4.3:89031458-89031477 | None:intergenic | 35.0% | |
| CGTATCATGCAGTTAAAAGA+AGG | + | chr4.3:89031542-89031561 | MS.gene34350:intron | 35.0% | |
| CGTTGTAATTGATGTCAATC+CGG | + | chr4.3:89031456-89031475 | MS.gene34350:intron | 35.0% | |
| GATGTAATCAAACCAGTTGT+TGG | - | chr4.3:89028389-89028408 | None:intergenic | 35.0% | |
| GCCTAAGTAAGTGCTTATAA+AGG | - | chr4.3:89029808-89029827 | None:intergenic | 35.0% | |
| GCCTTAATGGCAGTTAATTA+AGG | - | chr4.3:89029629-89029648 | None:intergenic | 35.0% | |
| GCTTGTATGAATATAGAGGA+TGG | + | chr4.3:89029126-89029145 | MS.gene34350:CDS | 35.0% | |
| GGTTCCAAATCTAGAAAATC+TGG | + | chr4.3:89028101-89028120 | MS.gene34350:CDS | 35.0% | |
| GTGGATGTATATACACATCT+TGG | - | chr4.3:89029104-89029123 | None:intergenic | 35.0% | |
| TATCTTCACTATGTCGTAGT+GGG | - | chr4.3:89029999-89030018 | None:intergenic | 35.0% | |
| TCAAGAAGTCAGGAGAATTA+GGG | + | chr4.3:89028054-89028073 | MS.gene34350:CDS | 35.0% | |
| TCAATGAAAAGGACAAACTC+AGG | + | chr4.3:89028266-89028285 | MS.gene34350:CDS | 35.0% | |
| TCATCTTCGATGAAAGTTCT+TGG | - | chr4.3:89030600-89030619 | None:intergenic | 35.0% | |
| TCCAACACTTTCATTGTTGT+TGG | - | chr4.3:89029872-89029891 | None:intergenic | 35.0% | |
| TGAAGTTCTTATGAAAGTGG+CGG | + | chr4.3:89031613-89031632 | MS.gene34350:intron | 35.0% | |
| TGACATAGCAAACATCAGAA+TGG | + | chr4.3:89030043-89030062 | MS.gene34350:intron | 35.0% | |
| TGATACGATCATCACTAGAA+AGG | - | chr4.3:89031529-89031548 | None:intergenic | 35.0% | |
| TGGATGATGAATATTCCTTC+AGG | + | chr4.3:89028534-89028553 | MS.gene34350:CDS | 35.0% | |
| TTATTCAATGCAGAGACATG+TGG | + | chr4.3:89031341-89031360 | MS.gene34350:intron | 35.0% | |
| TTTGGGCCTTACTAATTGTA+TGG | + | chr4.3:89029492-89029511 | MS.gene34350:intron | 35.0% | |
| ! | CAATGATTTTCCAACACAAG+TGG | + | chr4.3:89030480-89030499 | MS.gene34350:intron | 35.0% |
| ! | CCAACACTTTCATTGTTGTT+GGG | - | chr4.3:89029871-89029890 | None:intergenic | 35.0% |
| ! | CTTCTTTCTTTCTTTTGACG+GGG | + | chr4.3:89031038-89031057 | MS.gene34350:intron | 35.0% |
| ! | GAAGGCATACTACCTAATAA+GGG | - | chr4.3:89031110-89031129 | None:intergenic | 35.0% |
| ! | TACACGTTCAACCAATTTTC+TGG | + | chr4.3:89030296-89030315 | MS.gene34350:intron | 35.0% |
| ! | TGAAGGCATACTACCTAATA+AGG | - | chr4.3:89031111-89031130 | None:intergenic | 35.0% |
| ! | TGAAGTTTGAGGCAAAACTT+AGG | - | chr4.3:89030731-89030750 | None:intergenic | 35.0% |
| ! | TGAGTTTGTCCTTTTCATTG+AGG | - | chr4.3:89028267-89028286 | None:intergenic | 35.0% |
| ! | TGGACCAGATTTTCTAGATT+TGG | - | chr4.3:89028108-89028127 | None:intergenic | 35.0% |
| ! | TGGGTTACTTAAGCTTTAGT+GGG | + | chr4.3:89030554-89030573 | MS.gene34350:intron | 35.0% |
| ! | TGTGTAAAGGCATGAAACAA+GGG | + | chr4.3:89030523-89030542 | MS.gene34350:intron | 35.0% |
| ! | TTCTTTCTTTCTTTTGACGG+GGG | + | chr4.3:89031039-89031058 | MS.gene34350:intron | 35.0% |
| ! | TTGGGTTACTTAAGCTTTAG+TGG | + | chr4.3:89030553-89030572 | MS.gene34350:intron | 35.0% |
| ! | TTTTGACGGGGGATTTATTA+TGG | + | chr4.3:89031050-89031069 | MS.gene34350:intron | 35.0% |
| !! | AACAACAATGAAAGTGTTGG+AGG | + | chr4.3:89029871-89029890 | MS.gene34350:intron | 35.0% |
| !! | ACAACTGGTTTGATTACATC+TGG | + | chr4.3:89028389-89028408 | MS.gene34350:CDS | 35.0% |
| !! | CATTGGTTTAAAACAGGCTT+TGG | + | chr4.3:89031403-89031422 | MS.gene34350:intron | 35.0% |
| !! | CCATGGATTAGTTCATAAAG+TGG | + | chr4.3:89028934-89028953 | MS.gene34350:intron | 35.0% |
| !! | TCTTGGAACTTTTTGAAAGG+AGG | - | chr4.3:89029087-89029106 | None:intergenic | 35.0% |
| !! | TGAGAGCATTGGTTTAAAAC+AGG | + | chr4.3:89031397-89031416 | MS.gene34350:intron | 35.0% |
| !! | TGTTTGCTATGTCACAATGT+TGG | - | chr4.3:89030037-89030056 | None:intergenic | 35.0% |
| !! | TGTTTTAAACCAATGCTCTC+AGG | - | chr4.3:89031398-89031417 | None:intergenic | 35.0% |
| !! | TTTTGAAAGGAGGACTCTAA+TGG | - | chr4.3:89029077-89029096 | None:intergenic | 35.0% |
| !!! | ATTGCTGGAGGTTTTATTCT+TGG | + | chr4.3:89028614-89028633 | MS.gene34350:CDS | 35.0% |
| AAACCAGTTGTTGGAAGAAC+TGG | - | chr4.3:89028380-89028399 | None:intergenic | 40.0% | |
| AAATGGTAGAGGTGATGAGA+TGG | - | chr4.3:89030184-89030203 | None:intergenic | 40.0% | |
| AAGCAATGGCCTGTATGTAT+CGG | + | chr4.3:89027959-89027978 | MS.gene34350:CDS | 40.0% | |
| AATGGTAGAGGTGATGAGAT+GGG | - | chr4.3:89030183-89030202 | None:intergenic | 40.0% | |
| ACAACGGAATCGTCAACATA+AGG | - | chr4.3:89031442-89031461 | None:intergenic | 40.0% | |
| ACAGTTTGTGAAGGTTTCTG+GGG | + | chr4.3:89028790-89028809 | MS.gene34350:CDS | 40.0% | |
| ACTTCCCAAAGCCAATATTG+TGG | + | chr4.3:89028561-89028580 | MS.gene34350:CDS | 40.0% | |
| AGATACATTGTCCATGCTTC+CGG | - | chr4.3:89029690-89029709 | None:intergenic | 40.0% | |
| ATGAAACAAGGGGGGATATT+TGG | + | chr4.3:89030534-89030553 | MS.gene34350:intron | 40.0% | |
| ATTGACCCTAAGGACTCTAA+TGG | - | chr4.3:89028455-89028474 | None:intergenic | 40.0% | |
| CAACTTTGTAGGGTTGAGTT+AGG | - | chr4.3:89029761-89029780 | None:intergenic | 40.0% | |
| CAAGAATGGACAGTTTGTGA+AGG | + | chr4.3:89028781-89028800 | MS.gene34350:CDS | 40.0% | |
| CATTAAACAACGCTCCTTCA+AGG | + | chr4.3:89028126-89028145 | MS.gene34350:CDS | 40.0% | |
| CATTGCTTAGCTGATGAGAT+GGG | - | chr4.3:89027947-89027966 | None:intergenic | 40.0% | |
| CCAATAGTCGATGACTATGA+TGG | - | chr4.3:89030799-89030818 | None:intergenic | 40.0% | |
| CTAACTCAACCCTACAAAGT+TGG | + | chr4.3:89029759-89029778 | MS.gene34350:intron | 40.0% | |
| CTACTTCAGCCTCAATGAAA+AGG | + | chr4.3:89028255-89028274 | MS.gene34350:CDS | 40.0% | |
| CTTACTTAGGCCATATCTCT+AGG | + | chr4.3:89029817-89029836 | MS.gene34350:intron | 40.0% | |
| CTTCACAAACTGTCCATTCT+TGG | - | chr4.3:89028783-89028802 | None:intergenic | 40.0% | |
| GAAAAATACATTTCGCCCAC+TGG | - | chr4.3:89031757-89031776 | None:intergenic | 40.0% | |
| GACAGTTTGTGAAGGTTTCT+GGG | + | chr4.3:89028789-89028808 | MS.gene34350:CDS | 40.0% | |
| GATGATGTTATGGTGCAACA+AGG | - | chr4.3:89030865-89030884 | None:intergenic | 40.0% | |
| GGTACATAAAGAAGGTAGCA+CGG | + | chr4.3:89031652-89031671 | MS.gene34350:intron | 40.0% | |
| GTGTTGGATGTGTGTGTATT+TGG | - | chr4.3:89028878-89028897 | None:intergenic | 40.0% | |
| TACATCTCTGACTTCCAATC+TGG | + | chr4.3:89031372-89031391 | MS.gene34350:intron | 40.0% | |
| TCAGGTCCGTTGAATAAACA+CGG | + | chr4.3:89028284-89028303 | MS.gene34350:CDS | 40.0% | |
| TGAAACAAGGGGGGATATTT+GGG | + | chr4.3:89030535-89030554 | MS.gene34350:intron | 40.0% | |
| TGCCATAACATCAGACATGA+AGG | - | chr4.3:89031128-89031147 | None:intergenic | 40.0% | |
| TGCCTTCATGTCTGATGTTA+TGG | + | chr4.3:89031123-89031142 | MS.gene34350:intron | 40.0% | |
| TGCGACTGCTTGAAATACTT+TGG | + | chr4.3:89029276-89029295 | MS.gene34350:intron | 40.0% | |
| TGCTTGAAATACTTTGGCCA+TGG | + | chr4.3:89029282-89029301 | MS.gene34350:intron | 40.0% | |
| TTCACTTGGAATAGTTGTCG+TGG | + | chr4.3:89028701-89028720 | MS.gene34350:CDS | 40.0% | |
| TTCGTTATGGGATTCATTGC+TGG | + | chr4.3:89028599-89028618 | MS.gene34350:CDS | 40.0% | |
| ! | AGTAATTCTTTTTGCTGCGG+TGG | + | chr4.3:89028670-89028689 | MS.gene34350:CDS | 40.0% |
| ! | CAATAAGGAGTATGGCATTG+CGG | - | chr4.3:89028646-89028665 | None:intergenic | 40.0% |
| ! | CCATCATAGTCATCGACTAT+TGG | + | chr4.3:89030796-89030815 | MS.gene34350:intron | 40.0% |
| ! | CCCAACAACAATGAAAGTGT+TGG | + | chr4.3:89029868-89029887 | MS.gene34350:intron | 40.0% |
| ! | CTAGATTTGGAACCATCCAT+AGG | - | chr4.3:89028095-89028114 | None:intergenic | 40.0% |
| ! | GGGTTACTTAAGCTTTAGTG+GGG | + | chr4.3:89030555-89030574 | MS.gene34350:intron | 40.0% |
| ! | GTGTAAAGGCATGAAACAAG+GGG | + | chr4.3:89030524-89030543 | MS.gene34350:intron | 40.0% |
| ! | GTGTGTAAAGGCATGAAACA+AGG | + | chr4.3:89030522-89030541 | MS.gene34350:intron | 40.0% |
| ! | TAAAACAGGCTTTGGTGCAA+GGG | + | chr4.3:89031411-89031430 | MS.gene34350:intron | 40.0% |
| ! | TGGGATCAGCTAAGTTTTTC+AGG | + | chr4.3:89030500-89030519 | MS.gene34350:intron | 40.0% |
| ! | TGTAAAGGCATGAAACAAGG+GGG | + | chr4.3:89030525-89030544 | MS.gene34350:intron | 40.0% |
| ! | TTAAAACAGGCTTTGGTGCA+AGG | + | chr4.3:89031410-89031429 | MS.gene34350:intron | 40.0% |
| ! | TTTCATTGTTGTTGGGTGCA+GGG | - | chr4.3:89029864-89029883 | None:intergenic | 40.0% |
| !! | ACAGACCACAATATTGGCTT+TGG | - | chr4.3:89028569-89028588 | None:intergenic | 40.0% |
| !! | CAGACCACAATATTGGCTTT+GGG | - | chr4.3:89028568-89028587 | None:intergenic | 40.0% |
| !! | CTTGAAGGAGCGTTGTTTAA+TGG | - | chr4.3:89028128-89028147 | None:intergenic | 40.0% |
| !! | TAAACATCGCCGTTTTACCT+GGG | + | chr4.3:89029169-89029188 | MS.gene34350:CDS | 40.0% |
| !!! | ATTTTTCCAGCTAGCCTTGA+AGG | + | chr4.3:89031770-89031789 | MS.gene34350:CDS | 40.0% |
| AACGAAGTCCCCAGGTAAAA+CGG | - | chr4.3:89029181-89029200 | None:intergenic | 45.0% | |
| AATATCCTGATGCAGAGCTG+AGG | + | chr4.3:89028753-89028772 | MS.gene34350:CDS | 45.0% | |
| AATGGACCAGAAACCTTCCT+TGG | - | chr4.3:89028437-89028456 | None:intergenic | 45.0% | |
| ACAATACCTTCAAGGCTAGC+TGG | - | chr4.3:89031779-89031798 | None:intergenic | 45.0% | |
| AGCAATGGCCTGTATGTATC+GGG | + | chr4.3:89027960-89027979 | MS.gene34350:CDS | 45.0% | |
| AGGTCCGTTGAATAAACACG+GGG | + | chr4.3:89028286-89028305 | MS.gene34350:CDS | 45.0% | |
| ATGGCAACTGAGCTCATTGT+TGG | - | chr4.3:89028014-89028033 | None:intergenic | 45.0% | |
| CAACAATGTGTGGCAAGTGT+TGG | - | chr4.3:89028894-89028913 | None:intergenic | 45.0% | |
| CAGGTCCGTTGAATAAACAC+GGG | + | chr4.3:89028285-89028304 | MS.gene34350:CDS | 45.0% | |
| CCATCTCATCAGCTAAGCAA+TGG | + | chr4.3:89027945-89027964 | MS.gene34350:CDS | 45.0% | |
| CCATTGCTTAGCTGATGAGA+TGG | - | chr4.3:89027948-89027967 | None:intergenic | 45.0% | |
| CGTGGAAGGAAAGCTATTGT+TGG | + | chr4.3:89028719-89028738 | MS.gene34350:CDS | 45.0% | |
| CTGGTCCATTAGAGTCCTTA+GGG | + | chr4.3:89028447-89028466 | MS.gene34350:CDS | 45.0% | |
| CTTGGAATAGTTGTCGTGGA+AGG | + | chr4.3:89028705-89028724 | MS.gene34350:CDS | 45.0% | |
| GCCATATCTCTAGGCAATGT+GGG | + | chr4.3:89029826-89029845 | MS.gene34350:intron | 45.0% | |
| GGACAGTTTGTGAAGGTTTC+TGG | + | chr4.3:89028788-89028807 | MS.gene34350:CDS | 45.0% | |
| GGTTCCCCGTGTTTATTCAA+CGG | - | chr4.3:89028293-89028312 | None:intergenic | 45.0% | |
| GGTTGGAAATTCCGCCTTAA+TGG | - | chr4.3:89029642-89029661 | None:intergenic | 45.0% | |
| GTTATGGGATTCATTGCTGG+AGG | + | chr4.3:89028602-89028621 | MS.gene34350:CDS | 45.0% | |
| GTTGAATAAACACGGGGAAC+CGG | + | chr4.3:89028292-89028311 | MS.gene34350:CDS | 45.0% | |
| TCAGGTAATCTATCTGCTGC+AGG | + | chr4.3:89028227-89028246 | MS.gene34350:CDS | 45.0% | |
| TCAGTTGCCATGCCTTATAC+CGG | + | chr4.3:89028023-89028042 | MS.gene34350:CDS | 45.0% | |
| TCATCGAAGATGAGATGGAG+TGG | + | chr4.3:89030607-89030626 | MS.gene34350:intron | 45.0% | |
| TCCCAACCATCGAAGGAAAT+CGG | - | chr4.3:89031499-89031518 | None:intergenic | 45.0% | |
| TCCCACATTGCCTAGAGATA+TGG | - | chr4.3:89029830-89029849 | None:intergenic | 45.0% | |
| TCTGGTCCATTAGAGTCCTT+AGG | + | chr4.3:89028446-89028465 | MS.gene34350:CDS | 45.0% | |
| TGACGGGGGATTTATTATGG+TGG | + | chr4.3:89031053-89031072 | MS.gene34350:intron | 45.0% | |
| TTAGCTGATCCCACTTGTGT+TGG | - | chr4.3:89030493-89030512 | None:intergenic | 45.0% | |
| TTTCTCTTCCCAACCATCGA+AGG | - | chr4.3:89031506-89031525 | None:intergenic | 45.0% | |
| TTTCTTTCGGCTGTTCAGGA+CGG | - | chr4.3:89027986-89028005 | None:intergenic | 45.0% | |
| ! | AACTAGGAGTGTGAGACAGA+TGG | + | chr4.3:89030403-89030422 | MS.gene34350:intron | 45.0% |
| ! | AATTCTTTTTGCTGCGGTGG+CGG | + | chr4.3:89028673-89028692 | MS.gene34350:CDS | 45.0% |
| ! | ACTAGGAGTGTGAGACAGAT+GGG | + | chr4.3:89030404-89030423 | MS.gene34350:intron | 45.0% |
| ! | CTTTCATTGTTGTTGGGTGC+AGG | - | chr4.3:89029865-89029884 | None:intergenic | 45.0% |
| ! | CTTTGGGAAGTTCTTCCTGA+AGG | - | chr4.3:89028552-89028571 | None:intergenic | 45.0% |
| ! | GCTGCTGCGTTTTGCATAAT+AGG | - | chr4.3:89028188-89028207 | None:intergenic | 45.0% |
| ! | GTAAAGGCATGAAACAAGGG+GGG | + | chr4.3:89030526-89030545 | MS.gene34350:intron | 45.0% |
| ! | GTTGGAAGAACTGGAGGTAT+TGG | - | chr4.3:89028371-89028390 | None:intergenic | 45.0% |
| ! | TTCATTGTTGTTGGGTGCAG+GGG | - | chr4.3:89029863-89029882 | None:intergenic | 45.0% |
| !! | AAACATCGCCGTTTTACCTG+GGG | + | chr4.3:89029170-89029189 | MS.gene34350:CDS | 45.0% |
| !! | CTAAACATCGCCGTTTTACC+TGG | + | chr4.3:89029168-89029187 | MS.gene34350:CDS | 45.0% |
| !! | CTTTTGAAGGTGGTAACCTG+CGG | + | chr4.3:89029044-89029063 | MS.gene34350:intron | 45.0% |
| !! | GGCGGCTATGATGTTTTTGT+AGG | + | chr4.3:89031631-89031650 | MS.gene34350:intron | 45.0% |
| !!! | GCATATTTTGGGACTTTGGC+AGG | + | chr4.3:89031274-89031293 | MS.gene34350:intron | 45.0% |
| AACAACGCTCCTTCAAGGAC+TGG | + | chr4.3:89028131-89028150 | MS.gene34350:CDS | 50.0% | |
| AAGTCCTCTGGTCCTCAATC+AGG | + | chr4.3:89028320-89028339 | MS.gene34350:CDS | 50.0% | |
| ACACTGAGAGTAGTCACAGC+TGG | - | chr4.3:89028515-89028534 | None:intergenic | 50.0% | |
| AGACAGATGGGAGAGTCATC+TGG | + | chr4.3:89030416-89030435 | MS.gene34350:intron | 50.0% | |
| AGCTGTGACTACTCTCAGTG+TGG | + | chr4.3:89028514-89028533 | MS.gene34350:CDS | 50.0% | |
| AGGTAGCACGGTTAGCGTAA+TGG | + | chr4.3:89031664-89031683 | MS.gene34350:CDS | 50.0% | |
| ATGAGATGGAGTGGTTGCAG+AGG | + | chr4.3:89030616-89030635 | MS.gene34350:intron | 50.0% | |
| CAACCATCGAAGGAAATCGG+GGG | - | chr4.3:89031496-89031515 | None:intergenic | 50.0% | |
| CCAACCATCGAAGGAAATCG+GGG | - | chr4.3:89031497-89031516 | None:intergenic | 50.0% | |
| CCAGTTGTTGGAAGAACTGG+AGG | - | chr4.3:89028377-89028396 | None:intergenic | 50.0% | |
| CCCAACCATCGAAGGAAATC+GGG | - | chr4.3:89031498-89031517 | None:intergenic | 50.0% | |
| CCCGATTTCCTTCGATGGTT+GGG | + | chr4.3:89031495-89031514 | MS.gene34350:intron | 50.0% | |
| CCTCCAGTTCTTCCAACAAC+TGG | + | chr4.3:89028374-89028393 | MS.gene34350:CDS | 50.0% | |
| CGTTCGGCTTATGTCACATC+AGG | + | chr4.3:89028209-89028228 | MS.gene34350:CDS | 50.0% | |
| CTCTAATGGAACATTGCCGC+AGG | - | chr4.3:89029063-89029082 | None:intergenic | 50.0% | |
| GAACCGGTTAAGAAGTCCTC+TGG | + | chr4.3:89028308-89028327 | MS.gene34350:CDS | 50.0% | |
| GAAGCCAGGAAACTCGAATC+TGG | + | chr4.3:89030080-89030099 | MS.gene34350:intron | 50.0% | |
| GCAAACGATCCAGTCCTTGA+AGG | - | chr4.3:89028143-89028162 | None:intergenic | 50.0% | |
| GGACCAGAGGACTTCTTAAC+CGG | - | chr4.3:89028314-89028333 | None:intergenic | 50.0% | |
| GGCCATATCTCTAGGCAATG+TGG | + | chr4.3:89029825-89029844 | MS.gene34350:intron | 50.0% | |
| GGTAGCACGGTTAGCGTAAT+GGG | + | chr4.3:89031665-89031684 | MS.gene34350:CDS | 50.0% | |
| GTCCTGAACAGCCGAAAGAA+AGG | + | chr4.3:89027985-89028004 | MS.gene34350:CDS | 50.0% | |
| GTCCTTTCTTTCGGCTGTTC+AGG | - | chr4.3:89027990-89028009 | None:intergenic | 50.0% | |
| TCAAGGACTGGATCGTTTGC+AGG | + | chr4.3:89028143-89028162 | MS.gene34350:CDS | 50.0% | |
| TGACTTCTTGATGTCACCGC+CGG | - | chr4.3:89028045-89028064 | None:intergenic | 50.0% | |
| TGAGATGGAGTGGTTGCAGA+GGG | + | chr4.3:89030617-89030636 | MS.gene34350:intron | 50.0% | |
| TTGATGTCACCGCCGGTATA+AGG | - | chr4.3:89028038-89028057 | None:intergenic | 50.0% | |
| TTGGAGAGCTTGTAGAAGCC+AGG | + | chr4.3:89030066-89030085 | MS.gene34350:intron | 50.0% | |
| ! | AAGCTTTAGTGGGGTCAGAC+TGG | + | chr4.3:89030564-89030583 | MS.gene34350:intron | 50.0% |
| ! | AGCTTTAGTGGGGTCAGACT+GGG | + | chr4.3:89030565-89030584 | MS.gene34350:intron | 50.0% |
| ! | GGGGGACATGTCTTATTCTC+CGG | - | chr4.3:89031478-89031497 | None:intergenic | 50.0% |
| ! | TCATTGTTGTTGGGTGCAGG+GGG | - | chr4.3:89029862-89029881 | None:intergenic | 50.0% |
| ! | TGAATTCATCTGGGGCTCCA+AGG | + | chr4.3:89028417-89028436 | MS.gene34350:CDS | 50.0% |
| !!! | GAGGTATTGGACCCGAGTTT+TGG | - | chr4.3:89028358-89028377 | None:intergenic | 50.0% |
| ACATTTCGCCCACTGGCATC+CGG | - | chr4.3:89031750-89031769 | None:intergenic | 55.0% | |
| ACCACCTGATTGAGGACCAG+AGG | - | chr4.3:89028327-89028346 | None:intergenic | 55.0% | |
| CAACGAAGGCAGCTCAAGTG+TGG | + | chr4.3:89029897-89029916 | MS.gene34350:intron | 55.0% | |
| CCAATGCTCTCAGGCCAGAT+TGG | - | chr4.3:89031389-89031408 | None:intergenic | 55.0% | |
| CCCCGATTTCCTTCGATGGT+TGG | + | chr4.3:89031494-89031513 | MS.gene34350:intron | 55.0% | |
| CCCTCATGACCAAACCCGAT+GGG | + | chr4.3:89029664-89029683 | MS.gene34350:intron | 55.0% | |
| CTCAGTTGAACGAAGTCCCC+AGG | - | chr4.3:89029189-89029208 | None:intergenic | 55.0% | |
| CTGGCCCGCTGAATTCATCT+GGG | + | chr4.3:89028408-89028427 | MS.gene34350:CDS | 55.0% | |
| CTGGGGACTTCGTTCAACTG+AGG | + | chr4.3:89029187-89029206 | MS.gene34350:CDS | 55.0% | |
| GAGATGGAGTGGTTGCAGAG+GGG | + | chr4.3:89030618-89030637 | MS.gene34350:intron | 55.0% | |
| GAGCCCCAGATGAATTCAGC+GGG | - | chr4.3:89028415-89028434 | None:intergenic | 55.0% | |
| GAGCTGAGGACAGCCAAGAA+TGG | + | chr4.3:89028767-89028786 | MS.gene34350:CDS | 55.0% | |
| GCAAAACGCAGCAGCTCGTT+CGG | + | chr4.3:89028193-89028212 | MS.gene34350:CDS | 55.0% | |
| GGAGCCCCAGATGAATTCAG+CGG | - | chr4.3:89028416-89028435 | None:intergenic | 55.0% | |
| GGCGGTGACATCAAGAAGTC+AGG | + | chr4.3:89028044-89028063 | MS.gene34350:CDS | 55.0% | |
| GTTGCCATGCCTTATACCGG+CGG | + | chr4.3:89028026-89028045 | MS.gene34350:CDS | 55.0% | |
| TCCTCTGGTCCTCAATCAGG+TGG | + | chr4.3:89028323-89028342 | MS.gene34350:CDS | 55.0% | |
| TCTGGCCCGCTGAATTCATC+TGG | + | chr4.3:89028407-89028426 | MS.gene34350:CDS | 55.0% | |
| TCTGGTCCTCAATCAGGTGG+TGG | + | chr4.3:89028326-89028345 | MS.gene34350:CDS | 55.0% | |
| TGGCCCGCTGAATTCATCTG+GGG | + | chr4.3:89028409-89028428 | MS.gene34350:CDS | 55.0% | |
| TGGTGGCACACGCCAAAACT+CGG | + | chr4.3:89028343-89028362 | MS.gene34350:CDS | 55.0% | |
| TGTCCCCCGATTTCCTTCGA+TGG | + | chr4.3:89031490-89031509 | MS.gene34350:intron | 55.0% | |
| TTTGACGACCGGATGCCAGT+GGG | + | chr4.3:89031739-89031758 | MS.gene34350:CDS | 55.0% | |
| ! | AGTGTTGGAGGCTGCAACGA+AGG | + | chr4.3:89029883-89029902 | MS.gene34350:intron | 55.0% |
| ! | ATCGGGTTTGGTCATGAGGG+GGG | - | chr4.3:89029664-89029683 | None:intergenic | 55.0% |
| ! | CATCGGGTTTGGTCATGAGG+GGG | - | chr4.3:89029665-89029684 | None:intergenic | 55.0% |
| ! | CCAATCTGGCCTGAGAGCAT+TGG | + | chr4.3:89031386-89031405 | MS.gene34350:intron | 55.0% |
| ! | CCATCGGGTTTGGTCATGAG+GGG | - | chr4.3:89029666-89029685 | None:intergenic | 55.0% |
| ! | CCCATCGGGTTTGGTCATGA+GGG | - | chr4.3:89029667-89029686 | None:intergenic | 55.0% |
| ! | CGGTGGCGGCATTATTCACT+TGG | + | chr4.3:89028687-89028706 | MS.gene34350:CDS | 55.0% |
| ! | GGCACCAGATTCGAGTTTCC+TGG | - | chr4.3:89030087-89030106 | None:intergenic | 55.0% |
| ! | TTCATCTGGGGCTCCAAGGA+AGG | + | chr4.3:89028421-89028440 | MS.gene34350:CDS | 55.0% |
| CACTGGCATCCGGTCGTCAA+AGG | - | chr4.3:89031740-89031759 | None:intergenic | 60.0% | |
| CAGGACGGCCCGATACATAC+AGG | - | chr4.3:89027971-89027990 | None:intergenic | 60.0% | |
| CATCCGGTCGTCAAAGGCTC+AGG | - | chr4.3:89031734-89031753 | None:intergenic | 60.0% | |
| CATGACCAAACCCGATGGGC+CGG | + | chr4.3:89029668-89029687 | MS.gene34350:intron | 60.0% | |
| CCCCTCATGACCAAACCCGA+TGG | + | chr4.3:89029663-89029682 | MS.gene34350:intron | 60.0% | |
| CCTCCTGAGCCTTTGACGAC+CGG | + | chr4.3:89031728-89031747 | MS.gene34350:CDS | 60.0% | |
| CGTGTGCCACCACCTGATTG+AGG | - | chr4.3:89028335-89028354 | None:intergenic | 60.0% | |
| CTTTGACGACCGGATGCCAG+TGG | + | chr4.3:89031738-89031757 | MS.gene34350:CDS | 60.0% | |
| GCTGTCCTCAGCTCTGCATC+AGG | - | chr4.3:89028761-89028780 | None:intergenic | 60.0% | |
| GGGGCTCCAAGGAAGGTTTC+TGG | + | chr4.3:89028428-89028447 | MS.gene34350:CDS | 60.0% | |
| GGTGGCACACGCCAAAACTC+GGG | + | chr4.3:89028344-89028363 | MS.gene34350:CDS | 60.0% | |
| GTCACCGCCGGTATAAGGCA+TGG | - | chr4.3:89028033-89028052 | None:intergenic | 60.0% | |
| GTCGTCAAAGGCTCAGGAGG+AGG | - | chr4.3:89031728-89031747 | None:intergenic | 60.0% | |
| GTTTGGTCATGAGGGGGGGT+TGG | - | chr4.3:89029659-89029678 | None:intergenic | 60.0% | |
| TGTCCATGCTTCCGGCCCAT+CGG | - | chr4.3:89029682-89029701 | None:intergenic | 60.0% | |
| TGTTGTTGGGTGCAGGGGGT+GGG | - | chr4.3:89029858-89029877 | None:intergenic | 60.0% | |
| ! | GCCCATCGGGTTTGGTCATG+AGG | - | chr4.3:89029668-89029687 | None:intergenic | 60.0% |
| ! | TCGGGTTTGGTCATGAGGGG+GGG | - | chr4.3:89029663-89029682 | None:intergenic | 60.0% |
| ! | TTGTTGTTGGGTGCAGGGGG+TGG | - | chr4.3:89029859-89029878 | None:intergenic | 60.0% |
| AACCCGATGGGCCGGAAGCA+TGG | + | chr4.3:89029676-89029695 | MS.gene34350:intron | 65.0% | |
| CCGGTCGTCAAAGGCTCAGG+AGG | - | chr4.3:89031731-89031750 | None:intergenic | 65.0% | |
| GTCCATGCTTCCGGCCCATC+GGG | - | chr4.3:89029681-89029700 | None:intergenic | 65.0% | |
| GTGGGGTCAGACTGGGTCTC+AGG | + | chr4.3:89030572-89030591 | MS.gene34350:intron | 65.0% | |
| TGCTTCCGGCCCATCGGGTT+TGG | - | chr4.3:89029676-89029695 | None:intergenic | 65.0% | |
| ! | GCAGGCGCTGCTTCGCACTC+TGG | + | chr4.3:89028161-89028180 | MS.gene34350:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 89027930 | 89031844 | 89027930 | ID=MS.gene34350 |
| chr4.3 | mRNA | 89027930 | 89031844 | 89027930 | ID=MS.gene34350.t1;Parent=MS.gene34350 |
| chr4.3 | exon | 89027930 | 89028811 | 89027930 | ID=MS.gene34350.t1.exon1;Parent=MS.gene34350.t1 |
| chr4.3 | CDS | 89027930 | 89028811 | 89027930 | ID=cds.MS.gene34350.t1;Parent=MS.gene34350.t1 |
| chr4.3 | exon | 89029053 | 89029208 | 89029053 | ID=MS.gene34350.t1.exon2;Parent=MS.gene34350.t1 |
| chr4.3 | CDS | 89029053 | 89029208 | 89029053 | ID=cds.MS.gene34350.t1;Parent=MS.gene34350.t1 |
| chr4.3 | exon | 89031653 | 89031844 | 89031653 | ID=MS.gene34350.t1.exon3;Parent=MS.gene34350.t1 |
| chr4.3 | CDS | 89031653 | 89031844 | 89031653 | ID=cds.MS.gene34350.t1;Parent=MS.gene34350.t1 |
| Gene Sequence |
| Protein sequence |
