AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34440.t1 MTR_1g101790 97.829 645 12 2 1 645 1 643 0.0 1304
MS.gene34440.t1 MTR_1g101790 97.792 634 12 2 1 634 1 632 0.0 1280
MS.gene34440.t1 MTR_6g089580 67.020 661 163 13 2 645 6 628 0.0 842
MS.gene34440.t1 MTR_6g464840 66.566 661 166 13 2 645 6 628 0.0 842
MS.gene34440.t1 MTR_4g102620 50.466 644 273 12 8 645 12 615 0.0 601
MS.gene34440.t1 MTR_8g079020 47.130 331 146 5 50 376 95 400 4.62e-90 300
MS.gene34440.t1 MTR_8g079020 42.347 196 107 3 438 628 731 925 1.11e-35 144
MS.gene34440.t1 MTR_8g079040 47.826 322 139 5 59 376 104 400 7.70e-90 299
MS.gene34440.t1 MTR_8g079040 43.216 199 107 3 438 631 727 924 1.71e-38 153
MS.gene34440.t1 MTR_3g099200 30.500 200 117 8 174 366 134 318 1.96e-18 87.4
MS.gene34440.t1 MTR_3g099200 31.250 192 110 8 174 358 181 357 2.57e-18 87.8
MS.gene34440.t1 MTR_4g102890 31.183 186 113 8 174 358 91 262 2.91e-16 79.7
MS.gene34440.t1 MTR_4g102890 31.183 186 113 8 174 358 126 297 4.03e-16 80.1
MS.gene34440.t1 MTR_4g102890 31.183 186 113 8 174 358 174 345 5.73e-16 80.5
MS.gene34440.t1 MTR_4g104060 27.568 185 119 7 174 358 172 341 3.25e-14 75.1
MS.gene34440.t1 MTR_4g104060 27.568 185 119 7 174 358 158 327 3.28e-14 74.7
MS.gene34440.t1 MTR_4g030930 26.147 218 128 7 178 369 34 244 5.12e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34440.t1 AT5G51920 50.560 625 223 11 12 634 16 556 0.0 574
MS.gene34440.t1 AT4G22980 41.315 593 256 14 56 640 49 557 4.37e-135 407
MS.gene34440.t1 AT5G66950 49.550 333 136 6 50 376 93 399 3.59e-95 312
MS.gene34440.t1 AT5G66950 47.399 173 76 3 463 630 693 855 3.98e-37 149
MS.gene34440.t1 AT4G37100 45.722 374 166 8 63 426 110 456 7.12e-93 306
MS.gene34440.t1 AT4G37100 46.286 175 89 3 455 627 704 875 6.03e-36 145
MS.gene34440.t1 AT2G23520 42.967 391 182 9 50 426 95 458 2.36e-90 300
MS.gene34440.t1 AT2G23520 40.196 204 114 3 432 627 673 876 8.95e-33 135
MS.gene34440.t1 AT1G16540 26.609 233 126 9 171 369 78 299 2.46e-13 73.9
MS.gene34440.t1 AT1G16540 26.609 233 126 9 171 369 78 299 2.73e-13 73.9
MS.gene34440.t1 AT1G16540 26.609 233 126 9 171 369 78 299 3.18e-13 73.6

Find 113 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATCATCTTCTTCAATT+TGG 0.166875 1.2:-75966657 None:intergenic
ATGGATTTCTGCATCATATT+TGG 0.188983 1.2:+75967539 MS.gene34440:CDS
GCATTGTGAAGAACTGTTTC+TGG 0.195173 1.2:-75965985 None:intergenic
GTTCCCTTAGTCAAGATTTA+TGG 0.214330 1.2:+75967394 MS.gene34440:CDS
AGATTCATGGTTTGTGAATT+TGG 0.224461 1.2:-75966051 None:intergenic
TCAGAACCTTGTGGAACTTT+TGG 0.240595 1.2:-75967169 None:intergenic
TACTGCTGCATTAAGCTTCT+TGG 0.246802 1.2:+75967678 MS.gene34440:CDS
AAAGAAAGATAGAGATGATT+TGG 0.248446 1.2:+75967642 MS.gene34440:CDS
GAGGAAGGTACCTTATAAAT+TGG 0.252586 1.2:+75967326 MS.gene34440:CDS
TAGAAGATTTCTTGACAAAA+AGG 0.259026 1.2:-75966934 None:intergenic
AGATTAAATTGCGTACTTTC+TGG 0.260689 1.2:-75967004 None:intergenic
CTGAAACTATGGAGGCAAAA+AGG 0.271150 1.2:+75967188 MS.gene34440:CDS
GAGCAAGATATCCTTATCTT+TGG 0.278624 1.2:+75966753 MS.gene34440:CDS
ATGTTGTTGACGTTGATAAT+AGG 0.286526 1.2:-75966228 None:intergenic
CCACTTCATTCAAGGGTAAC+AGG 0.289081 1.2:+75966731 MS.gene34440:CDS
AGAAAGATGGTAATATTCTT+TGG 0.291187 1.2:-75966159 None:intergenic
TTTAGTATTTCCTACAAAAC+TGG 0.297399 1.2:+75966332 MS.gene34440:CDS
TTGATTGATGCTTGTGCATT+AGG 0.298332 1.2:+75966809 MS.gene34440:CDS
CCTCTATCAAATCTTATCTT+TGG 0.300166 1.2:-75967418 None:intergenic
GGAGAAAATCCATCTGGTTT+TGG 0.300460 1.2:+75966908 MS.gene34440:CDS
CCAAAACTGTCCATGTCTTT+TGG 0.314322 1.2:-75966833 None:intergenic
AGTTTACAAGCCAATTTATA+AGG 0.318414 1.2:-75967336 None:intergenic
TTCTGAAAATGATTATTTCA+TGG 0.325758 1.2:+75966442 MS.gene34440:CDS
TTGAAGACTTTATTGCTTCA+TGG 0.326674 1.2:+75966359 MS.gene34440:CDS
TTGGATCAAGTGGACTCTTT+AGG 0.327381 1.2:+75967283 MS.gene34440:CDS
TTGAAGATGTGTATAAACTA+TGG 0.329565 1.2:+75967707 MS.gene34440:CDS
TGAAGAACTGTTTCTGGGTT+TGG 0.332280 1.2:-75965979 None:intergenic
TCCACAAGGTTCTGAAACTA+TGG 0.339657 1.2:+75967177 MS.gene34440:CDS
AAGGGAACCCCTTCATCATT+AGG 0.351025 1.2:-75967379 None:intergenic
CCAAAAGACATGGACAGTTT+TGG 0.355281 1.2:+75966833 MS.gene34440:CDS
CTATCAGAAGATTATTCTTC+GGG 0.355296 1.2:+75967025 MS.gene34440:CDS
TAGCTTTCAATGTTTATGAT+TGG 0.366950 1.2:+75967449 MS.gene34440:CDS
TAACATTGAATGCAGGTGTT+TGG 0.367839 1.2:+75967264 MS.gene34440:CDS
CATTGTGAAGAACTGTTTCT+GGG 0.378112 1.2:-75965984 None:intergenic
TGTCTTGATTATATCGGTAT+TGG 0.379016 1.2:+75966197 MS.gene34440:CDS
TCCTGCTCTTGTAAAATAGA+TGG 0.379943 1.2:-75967079 None:intergenic
CAATCTTGTCTTGATTATAT+CGG 0.381888 1.2:+75966191 MS.gene34440:CDS
AAGAAAGATAGAGATGATTT+GGG 0.382430 1.2:+75967643 MS.gene34440:CDS
AATGAACAAATGAGAAAATC+TGG 0.384998 1.2:-75966872 None:intergenic
TGATGATTTGATGAACAATA+AGG 0.394314 1.2:-75965931 None:intergenic
GCAAGTTTCTGTACTAAAAC+AGG 0.396354 1.2:-75967490 None:intergenic
TCTATCAGAAGATTATTCTT+CGG 0.408300 1.2:+75967024 MS.gene34440:CDS
TTGTATTTCCACTTCATTCA+AGG 0.408976 1.2:+75966723 MS.gene34440:CDS
TTTGTAGGAAATACTAAAGA+AGG 0.415912 1.2:-75966327 None:intergenic
GGTAATAATCAAGTAGGAAC+TGG 0.437830 1.2:+75967046 MS.gene34440:CDS
TGGTTTGTGAATTTGGTGTT+TGG 0.441750 1.2:-75966044 None:intergenic
AGGGAACCCCTTCATCATTA+GGG 0.445414 1.2:-75967378 None:intergenic
CTTGAATCCTCCACTTGTGC+AGG 0.447757 1.2:+75966965 MS.gene34440:CDS
CGATATAATCAAGACAAGAT+TGG 0.451019 1.2:-75966190 None:intergenic
TTGAGTCTGCAATGAGGAAA+AGG 0.451252 1.2:+75966399 MS.gene34440:CDS
TGGACCATAAATCTTGACTA+AGG 0.453919 1.2:-75967398 None:intergenic
AGCTTCTTACAAGATTGAAA+TGG 0.456571 1.2:-75966515 None:intergenic
GTTGATTGAATTCTAAGCCT+TGG 0.461468 1.2:-75966635 None:intergenic
TTGTGGAGAAGGAGAGGTGG+AGG 0.466260 1.2:+75967761 MS.gene34440:CDS
TATAAGGTACCTTCCTCTGT+TGG 0.479890 1.2:-75967320 None:intergenic
ATTGCGTACTTTCTGGTACA+AGG 0.480220 1.2:-75966997 None:intergenic
TCTGCTATGAGTTCTTTCTC+TGG 0.493691 1.2:+75967106 MS.gene34440:CDS
CTAAAACACCCTAATGATGA+AGG 0.494035 1.2:+75967370 MS.gene34440:CDS
ACTGTTTCTGGGTTTGGTTG+TGG 0.497829 1.2:-75965973 None:intergenic
AACAATATATCTCTTAGCTA+TGG 0.500270 1.2:+75967520 MS.gene34440:CDS
CTATGAGTTCTTTCTCTGGA+AGG 0.500985 1.2:+75967110 MS.gene34440:CDS
GGACAGCAACCTTGAGAGAC+CGG 0.501539 1.2:-75965906 None:intergenic
AGATAAGTACTCAGAAGAGA+AGG 0.512225 1.2:+75967567 MS.gene34440:CDS
GAAGTGATGGAAGAGATTCA+TGG 0.514570 1.2:-75966064 None:intergenic
TCTTCGGGTAATAATCAAGT+AGG 0.514809 1.2:+75967040 MS.gene34440:CDS
AGAGTTCTACAGACAAAAGA+AGG 0.521500 1.2:+75967592 MS.gene34440:CDS
TGTATTTCCACTTCATTCAA+GGG 0.524789 1.2:+75966724 MS.gene34440:CDS
CCTGTTACCCTTGAATGAAG+TGG 0.538045 1.2:-75966731 None:intergenic
ATTGGTTTAAGAAAGAAAGA+TGG 0.538058 1.2:-75966172 None:intergenic
ATGATGTTGATGCAAAGGTT+TGG 0.538497 1.2:-75966010 None:intergenic
TGAAATGGTGTTGAAGTTGA+AGG 0.542981 1.2:-75966278 None:intergenic
TTCAATGTTTATGATTGGAA+AGG 0.543000 1.2:+75967454 MS.gene34440:CDS
TTGTAGGAAATACTAAAGAA+GGG 0.546032 1.2:-75966326 None:intergenic
GGTATATCAGAATACTGTTG+TGG 0.546111 1.2:-75966305 None:intergenic
GACAATTCCTGCACAAGTGG+AGG 0.546718 1.2:-75966972 None:intergenic
GTATATCAGAATACTGTTGT+GGG 0.546796 1.2:-75966304 None:intergenic
AGATGATTTGGGAGTGACAG+TGG 0.550613 1.2:+75967654 MS.gene34440:CDS
GCTGTTCTCATCCAAAGATA+AGG 0.552898 1.2:-75966764 None:intergenic
TTCTCAGTCTCAGAGAATTG+TGG 0.553672 1.2:-75966119 None:intergenic
GTTGACAATTCCTGCACAAG+TGG 0.555713 1.2:-75966975 None:intergenic
TACTGTTGTGGGGATTGAAA+TGG 0.557601 1.2:-75966293 None:intergenic
GAACAGCACAAGAGAATGGT+TGG 0.558173 1.2:+75966780 MS.gene34440:CDS
TGAGGATGATGTTGATGCAA+AGG 0.559727 1.2:-75966015 None:intergenic
CTACAGACAAAAGAAGGAAG+AGG 0.560836 1.2:+75967598 MS.gene34440:CDS
CTATGTCAGCTGAATTCTCA+TGG 0.562090 1.2:+75966612 MS.gene34440:CDS
GATTTGATGAACAATAAGGT+TGG 0.562625 1.2:-75965927 None:intergenic
ATGAGAACAGCACAAGAGAA+TGG 0.563673 1.2:+75966776 MS.gene34440:CDS
CAGCTGAATTCTCATGGCCA+AGG 0.567394 1.2:+75966618 MS.gene34440:CDS
AGAGCTTTAACATTGAATGC+AGG 0.572458 1.2:+75967257 MS.gene34440:CDS
GGACCATAAATCTTGACTAA+GGG 0.573713 1.2:-75967397 None:intergenic
TAAAACACCCTAATGATGAA+GGG 0.576153 1.2:+75967371 MS.gene34440:CDS
TAAACATTGAAAGCTAAAGC+AGG 0.579333 1.2:-75967442 None:intergenic
CACTGATAACCAACAGAGGA+AGG 0.580267 1.2:+75967311 MS.gene34440:CDS
ATGTTGATGCAAAGGTTTGG+CGG 0.584928 1.2:-75966007 None:intergenic
AGACTTTATTGCTTCATGGA+GGG 0.585375 1.2:+75966363 MS.gene34440:CDS
ATGCAGGTGTTTGGATCAAG+TGG 0.586464 1.2:+75967273 MS.gene34440:CDS
TCTCCACAAAATCTGCATCA+AGG 0.587719 1.2:-75967747 None:intergenic
AGGAAGAGGAGAGAAAGTAA+TGG 0.588435 1.2:+75967612 MS.gene34440:CDS
GTGAATGATTCATGAAGTGA+TGG 0.589772 1.2:-75966077 None:intergenic
GATAAGTACTCAGAAGAGAA+GGG 0.597070 1.2:+75967568 MS.gene34440:CDS
CCAAAGATAAGATTTGATAG+AGG 0.603821 1.2:+75967418 MS.gene34440:CDS
ACAAGTGGAGGATTCAAGAA+TGG 0.606389 1.2:-75966960 None:intergenic
TCCATAGTTTCAGAACCTTG+TGG 0.611892 1.2:-75967178 None:intergenic
AAGACTTTATTGCTTCATGG+AGG 0.616374 1.2:+75966362 MS.gene34440:CDS
TGACTATGAGAGTGAAGCAG+TGG 0.616607 1.2:+75966550 MS.gene34440:CDS
AAAAGGCAACCAAAACCAGA+TGG 0.623470 1.2:-75966917 None:intergenic
AAAACACCCTAATGATGAAG+GGG 0.635176 1.2:+75967372 MS.gene34440:CDS
CAGAATTTGAGTCTGCAATG+AGG 0.651477 1.2:+75966393 MS.gene34440:CDS
TGCATTAGGACCAAAAGACA+TGG 0.657489 1.2:+75966823 MS.gene34440:CDS
TATATCAGAATACTGTTGTG+GGG 0.659872 1.2:-75966303 None:intergenic
ACAAGGTTCTGAAACTATGG+AGG 0.673636 1.2:+75967180 MS.gene34440:CDS
TTGACACTGATAACCAACAG+AGG 0.715180 1.2:+75967307 MS.gene34440:CDS
GCAGATCCAAAAGTTCCACA+AGG 0.723615 1.2:+75967163 MS.gene34440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAGATAAAGAAGAAAAA+TGG + chr1.2:75966695-75966714 MS.gene34440:CDS 20.0%
!!! TTCTGAAAATGATTATTTCA+TGG + chr1.2:75966442-75966461 MS.gene34440:CDS 20.0%
! AAAGAAAGATAGAGATGATT+TGG + chr1.2:75967642-75967661 MS.gene34440:CDS 25.0%
! AACAATATATCTCTTAGCTA+TGG + chr1.2:75967520-75967539 MS.gene34440:CDS 25.0%
! AACAATCATCTTCTTCAATT+TGG - chr1.2:75966660-75966679 None:intergenic 25.0%
! AAGAAAGATAGAGATGATTT+GGG + chr1.2:75967643-75967662 MS.gene34440:CDS 25.0%
! AATGAACAAATGAGAAAATC+TGG - chr1.2:75966875-75966894 None:intergenic 25.0%
! AGAAAGATGGTAATATTCTT+TGG - chr1.2:75966162-75966181 None:intergenic 25.0%
! AGTTTACAAGCCAATTTATA+AGG - chr1.2:75967339-75967358 None:intergenic 25.0%
! ATTAGTACTTCAGAAAAAAG+AGG + chr1.2:75966581-75966600 MS.gene34440:CDS 25.0%
! CAATCTTGTCTTGATTATAT+CGG + chr1.2:75966191-75966210 MS.gene34440:CDS 25.0%
! TAGAAGATTTCTTGACAAAA+AGG - chr1.2:75966937-75966956 None:intergenic 25.0%
! TAGCTTTCAATGTTTATGAT+TGG + chr1.2:75967449-75967468 MS.gene34440:CDS 25.0%
! TCTATCAGAAGATTATTCTT+CGG + chr1.2:75967024-75967043 MS.gene34440:CDS 25.0%
! TGATGATTTGATGAACAATA+AGG - chr1.2:75965934-75965953 None:intergenic 25.0%
! TTCAATGTTTATGATTGGAA+AGG + chr1.2:75967454-75967473 MS.gene34440:CDS 25.0%
! TTGAAGATGTGTATAAACTA+TGG + chr1.2:75967707-75967726 MS.gene34440:CDS 25.0%
! TTGTAGGAAATACTAAAGAA+GGG - chr1.2:75966329-75966348 None:intergenic 25.0%
! TTTAGTATTTCCTACAAAAC+TGG + chr1.2:75966332-75966351 MS.gene34440:CDS 25.0%
! TTTGTAGGAAATACTAAAGA+AGG - chr1.2:75966330-75966349 None:intergenic 25.0%
!! ATTGGTTTAAGAAAGAAAGA+TGG - chr1.2:75966175-75966194 None:intergenic 25.0%
!! TGTTCATTCTACAAAGTTTT+TGG + chr1.2:75966887-75966906 MS.gene34440:CDS 25.0%
AGATTAAATTGCGTACTTTC+TGG - chr1.2:75967007-75967026 None:intergenic 30.0%
AGCTTCTTACAAGATTGAAA+TGG - chr1.2:75966518-75966537 None:intergenic 30.0%
ATGGATTTCTGCATCATATT+TGG + chr1.2:75967539-75967558 MS.gene34440:CDS 30.0%
CCAAAGATAAGATTTGATAG+AGG + chr1.2:75967418-75967437 MS.gene34440:CDS 30.0%
CCTCTATCAAATCTTATCTT+TGG - chr1.2:75967421-75967440 None:intergenic 30.0%
CGATATAATCAAGACAAGAT+TGG - chr1.2:75966193-75966212 None:intergenic 30.0%
CTATCAGAAGATTATTCTTC+GGG + chr1.2:75967025-75967044 MS.gene34440:CDS 30.0%
GATTTGATGAACAATAAGGT+TGG - chr1.2:75965930-75965949 None:intergenic 30.0%
GTATATCAGAATACTGTTGT+GGG - chr1.2:75966307-75966326 None:intergenic 30.0%
TAAAACACCCTAATGATGAA+GGG + chr1.2:75967371-75967390 MS.gene34440:CDS 30.0%
TAAACATTGAAAGCTAAAGC+AGG - chr1.2:75967445-75967464 None:intergenic 30.0%
TATATCAGAATACTGTTGTG+GGG - chr1.2:75966306-75966325 None:intergenic 30.0%
TGTATTTCCACTTCATTCAA+GGG + chr1.2:75966724-75966743 MS.gene34440:CDS 30.0%
TGTCTTGATTATATCGGTAT+TGG + chr1.2:75966197-75966216 MS.gene34440:CDS 30.0%
TTGAAGACTTTATTGCTTCA+TGG + chr1.2:75966359-75966378 MS.gene34440:CDS 30.0%
TTGTATTTCCACTTCATTCA+AGG + chr1.2:75966723-75966742 MS.gene34440:CDS 30.0%
! AGATTCATGGTTTGTGAATT+TGG - chr1.2:75966054-75966073 None:intergenic 30.0%
! GCTTCAACTTTTACAAATTG+TGG - chr1.2:75967145-75967164 None:intergenic 30.0%
!! ATGTTGTTGACGTTGATAAT+AGG - chr1.2:75966231-75966250 None:intergenic 30.0%
!! CTTCAAATTTCCAGTTTTGT+AGG - chr1.2:75966345-75966364 None:intergenic 30.0%
!! TTTGGTGTTTGGAAAAATTG+AGG - chr1.2:75966036-75966055 None:intergenic 30.0%
AAAACACCCTAATGATGAAG+GGG + chr1.2:75967372-75967391 MS.gene34440:CDS 35.0%
AAGACTTTATTGCTTCATGG+AGG + chr1.2:75966362-75966381 MS.gene34440:CDS 35.0%
AGACTTTATTGCTTCATGGA+GGG + chr1.2:75966363-75966382 MS.gene34440:CDS 35.0%
AGAGTTCTACAGACAAAAGA+AGG + chr1.2:75967592-75967611 MS.gene34440:CDS 35.0%
AGATAAGTACTCAGAAGAGA+AGG + chr1.2:75967567-75967586 MS.gene34440:CDS 35.0%
ATGATGTTGATGCAAAGGTT+TGG - chr1.2:75966013-75966032 None:intergenic 35.0%
CTAAAACACCCTAATGATGA+AGG + chr1.2:75967370-75967389 MS.gene34440:CDS 35.0%
GACAACACTTAACCAAAAAC+CGG + chr1.2:75965887-75965906 MS.gene34440:CDS 35.0%
GAGCAAGATATCCTTATCTT+TGG + chr1.2:75966753-75966772 MS.gene34440:CDS 35.0%
GATAAGTACTCAGAAGAGAA+GGG + chr1.2:75967568-75967587 MS.gene34440:CDS 35.0%
GCAAGTTTCTGTACTAAAAC+AGG - chr1.2:75967493-75967512 None:intergenic 35.0%
GGACCATAAATCTTGACTAA+GGG - chr1.2:75967400-75967419 None:intergenic 35.0%
GGTAATAATCAAGTAGGAAC+TGG + chr1.2:75967046-75967065 MS.gene34440:CDS 35.0%
GGTATATCAGAATACTGTTG+TGG - chr1.2:75966308-75966327 None:intergenic 35.0%
GTGAATGATTCATGAAGTGA+TGG - chr1.2:75966080-75966099 None:intergenic 35.0%
GTTCCCTTAGTCAAGATTTA+TGG + chr1.2:75967394-75967413 MS.gene34440:CDS 35.0%
GTTGATTGAATTCTAAGCCT+TGG - chr1.2:75966638-75966657 None:intergenic 35.0%
TAACATTGAATGCAGGTGTT+TGG + chr1.2:75967264-75967283 MS.gene34440:CDS 35.0%
TCCTGCTCTTGTAAAATAGA+TGG - chr1.2:75967082-75967101 None:intergenic 35.0%
TCTTCGGGTAATAATCAAGT+AGG + chr1.2:75967040-75967059 MS.gene34440:CDS 35.0%
TGAAACTATGGAGGCAAAAA+GGG + chr1.2:75967189-75967208 MS.gene34440:CDS 35.0%
TGGACCATAAATCTTGACTA+AGG - chr1.2:75967401-75967420 None:intergenic 35.0%
TTGATTGATGCTTGTGCATT+AGG + chr1.2:75966809-75966828 MS.gene34440:CDS 35.0%
! AACTATGGACTTTTGTTGCT+AGG + chr1.2:75967722-75967741 MS.gene34440:CDS 35.0%
! ACCATCTATTTTACAAGAGC+AGG + chr1.2:75967078-75967097 MS.gene34440:CDS 35.0%
! AGAGCTTTAACATTGAATGC+AGG + chr1.2:75967257-75967276 MS.gene34440:CDS 35.0%
! CATTGTGAAGAACTGTTTCT+GGG - chr1.2:75965987-75966006 None:intergenic 35.0%
! TGAAATGGTGTTGAAGTTGA+AGG - chr1.2:75966281-75966300 None:intergenic 35.0%
!! GAGGAAGGTACCTTATAAAT+TGG + chr1.2:75967326-75967345 MS.gene34440:CDS 35.0%
!! GTTTTTGGAGAAAATCCATC+TGG + chr1.2:75966902-75966921 MS.gene34440:CDS 35.0%
!! TGGTTTGTGAATTTGGTGTT+TGG - chr1.2:75966047-75966066 None:intergenic 35.0%
AAAAGGCAACCAAAACCAGA+TGG - chr1.2:75966920-75966939 None:intergenic 40.0%
ACAAGTGGAGGATTCAAGAA+TGG - chr1.2:75966963-75966982 None:intergenic 40.0%
AGGAAGAGGAGAGAAAGTAA+TGG + chr1.2:75967612-75967631 MS.gene34440:CDS 40.0%
ATGAGAACAGCACAAGAGAA+TGG + chr1.2:75966776-75966795 MS.gene34440:CDS 40.0%
ATGTTGATGCAAAGGTTTGG+CGG - chr1.2:75966010-75966029 None:intergenic 40.0%
CAGAATTTGAGTCTGCAATG+AGG + chr1.2:75966393-75966412 MS.gene34440:CDS 40.0%
CTACAGACAAAAGAAGGAAG+AGG + chr1.2:75967598-75967617 MS.gene34440:CDS 40.0%
CTATGAGTTCTTTCTCTGGA+AGG + chr1.2:75967110-75967129 MS.gene34440:CDS 40.0%
CTATGTCAGCTGAATTCTCA+TGG + chr1.2:75966612-75966631 MS.gene34440:CDS 40.0%
CTGAAACTATGGAGGCAAAA+AGG + chr1.2:75967188-75967207 MS.gene34440:CDS 40.0%
GCATTGTGAAGAACTGTTTC+TGG - chr1.2:75965988-75966007 None:intergenic 40.0%
GCTGTTCTCATCCAAAGATA+AGG - chr1.2:75966767-75966786 None:intergenic 40.0%
TACTGCTGCATTAAGCTTCT+TGG + chr1.2:75967678-75967697 MS.gene34440:CDS 40.0%
TACTGTTGTGGGGATTGAAA+TGG - chr1.2:75966296-75966315 None:intergenic 40.0%
TCCATAGTTTCAGAACCTTG+TGG - chr1.2:75967181-75967200 None:intergenic 40.0%
TCTCCACAAAATCTGCATCA+AGG - chr1.2:75967750-75967769 None:intergenic 40.0%
TCTGCTATGAGTTCTTTCTC+TGG + chr1.2:75967106-75967125 MS.gene34440:CDS 40.0%
TGAGGATGATGTTGATGCAA+AGG - chr1.2:75966018-75966037 None:intergenic 40.0%
TGCATTAGGACCAAAAGACA+TGG + chr1.2:75966823-75966842 MS.gene34440:CDS 40.0%
TTCTCAGTCTCAGAGAATTG+TGG - chr1.2:75966122-75966141 None:intergenic 40.0%
TTGACACTGATAACCAACAG+AGG + chr1.2:75967307-75967326 MS.gene34440:CDS 40.0%
TTGAGTCTGCAATGAGGAAA+AGG + chr1.2:75966399-75966418 MS.gene34440:CDS 40.0%
! ATTGCGTACTTTCTGGTACA+AGG - chr1.2:75967000-75967019 None:intergenic 40.0%
! CCAAAACTGTCCATGTCTTT+TGG - chr1.2:75966836-75966855 None:intergenic 40.0%
! CCAAAAGACATGGACAGTTT+TGG + chr1.2:75966833-75966852 MS.gene34440:CDS 40.0%
! GAAGTGATGGAAGAGATTCA+TGG - chr1.2:75966067-75966086 None:intergenic 40.0%
! GTTCCTTGATGCAGATTTTG+TGG + chr1.2:75967744-75967763 MS.gene34440:CDS 40.0%
! TATAAGGTACCTTCCTCTGT+TGG - chr1.2:75967323-75967342 None:intergenic 40.0%
! TCAGAACCTTGTGGAACTTT+TGG - chr1.2:75967172-75967191 None:intergenic 40.0%
! TGATGCAGATTTTGTGGAGA+AGG + chr1.2:75967750-75967769 MS.gene34440:CDS 40.0%
! TTGGATCAAGTGGACTCTTT+AGG + chr1.2:75967283-75967302 MS.gene34440:CDS 40.0%
!! ACAAGGTTCTGAAACTATGG+AGG + chr1.2:75967180-75967199 MS.gene34440:CDS 40.0%
!! GGAGAAAATCCATCTGGTTT+TGG + chr1.2:75966908-75966927 MS.gene34440:CDS 40.0%
!! TCCACAAGGTTCTGAAACTA+TGG + chr1.2:75967177-75967196 MS.gene34440:CDS 40.0%
!! TGAAGAACTGTTTCTGGGTT+TGG - chr1.2:75965982-75966001 None:intergenic 40.0%
AACCAAAAACCGGTCTCTCA+AGG + chr1.2:75965897-75965916 MS.gene34440:CDS 45.0%
AAGGGAACCCCTTCATCATT+AGG - chr1.2:75967382-75967401 None:intergenic 45.0%
AGGGAACCCCTTCATCATTA+GGG - chr1.2:75967381-75967400 None:intergenic 45.0%
ATGCAGGTGTTTGGATCAAG+TGG + chr1.2:75967273-75967292 MS.gene34440:CDS 45.0%
CACTGATAACCAACAGAGGA+AGG + chr1.2:75967311-75967330 MS.gene34440:CDS 45.0%
CCACTTCATTCAAGGGTAAC+AGG + chr1.2:75966731-75966750 MS.gene34440:CDS 45.0%
CCTGTTACCCTTGAATGAAG+TGG - chr1.2:75966734-75966753 None:intergenic 45.0%
GAACAGCACAAGAGAATGGT+TGG + chr1.2:75966780-75966799 MS.gene34440:CDS 45.0%
GCAGATCCAAAAGTTCCACA+AGG + chr1.2:75967163-75967182 MS.gene34440:CDS 45.0%
GTTGACAATTCCTGCACAAG+TGG - chr1.2:75966978-75966997 None:intergenic 45.0%
TGACTATGAGAGTGAAGCAG+TGG + chr1.2:75966550-75966569 MS.gene34440:CDS 45.0%
! AGATGATTTGGGAGTGACAG+TGG + chr1.2:75967654-75967673 MS.gene34440:CDS 45.0%
! ATTTTGTGGAGAAGGAGAGG+TGG + chr1.2:75967758-75967777 MS.gene34440:CDS 45.0%
! CAGATTTTGTGGAGAAGGAG+AGG + chr1.2:75967755-75967774 MS.gene34440:CDS 45.0%
!! AACCTTGAGAGACCGGTTTT+TGG - chr1.2:75965902-75965921 None:intergenic 45.0%
!! ACTGTTTCTGGGTTTGGTTG+TGG - chr1.2:75965976-75965995 None:intergenic 45.0%
CAGCTGAATTCTCATGGCCA+AGG + chr1.2:75966618-75966637 MS.gene34440:CDS 50.0%
CTTGAATCCTCCACTTGTGC+AGG + chr1.2:75966965-75966984 MS.gene34440:CDS 50.0%
GACAATTCCTGCACAAGTGG+AGG - chr1.2:75966975-75966994 None:intergenic 50.0%
GGACAGCAACCTTGAGAGAC+CGG - chr1.2:75965909-75965928 None:intergenic 55.0%
TTGTGGAGAAGGAGAGGTGG+AGG + chr1.2:75967761-75967780 MS.gene34440:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 75965882 75967819 75965882 ID=MS.gene34440
chr1.2 mRNA 75965882 75967819 75965882 ID=MS.gene34440.t1;Parent=MS.gene34440
chr1.2 exon 75965882 75967819 75965882 ID=MS.gene34440.t1.exon1;Parent=MS.gene34440.t1
chr1.2 CDS 75965882 75967819 75965882 ID=cds.MS.gene34440.t1;Parent=MS.gene34440.t1
Gene Sequence

>MS.gene34440

ATGCAGACAACACTTAACCAAAAACCGGTCTCTCAAGGTTGCTGTCCAACCTTATTGTTCATCAAATCATCACAACAATCTCACAACAATTCCACAACCAAACCCAGAAACAGTTCTTCACAATGCCGCCAAACCTTTGCATCAACATCATCCTCAATTTTTCCAAACACCAAATTCACAAACCATGAATCTCTTCCATCACTTCATGAATCATTCACTGAATTCATCAAAGTGTATCCACAATTCTCTGAGACTGAGAAAATTGATAGTTTAAGAGCCAAAGAATATTACCATCTTTCTTTCTTAAACCAATCTTGTCTTGATTATATCGGTATTGGTCTTTTTTCCTATTATCAACGTCAACAACATGATGCTTCAAAGACTCAGTTTTCTTCTCCTTCAACTTCAACACCATTTCAATCCCCACAACAGTATTCTGATATACCCTTCTTTAGTATTTCCTACAAAACTGGAAATTTGAAGACTTTATTGCTTCATGGAGGGAAAGAGTCAGAATTTGAGTCTGCAATGAGGAAAAGGATAATGAAGTTTCTTAACATTTCTGAAAATGATTATTTCATGGTTTTCACAGCAAATAGAACATCAGCTTTCAAACTTGTAGCAGATTCATATCCATTTCAATCTTGTAAGAAGCTTCTGACAGTTTATGACTATGAGAGTGAAGCAGTGGAAGCAATGATTAGTACTTCAGAAAAAAGAGGAGCTAAATCTATGTCAGCTGAATTCTCATGGCCAAGGCTTAGAATTCAATCAACCAAATTGAAGAAGATGATTGTTAATGATAATAGTAAGAAGAAGATAAAGAAGAAAAATGGTCTTTTTGTATTTCCACTTCATTCAAGGGTAACAGGAGCAAGATATCCTTATCTTTGGATGAGAACAGCACAAGAGAATGGTTGGCATGTTTTGATTGATGCTTGTGCATTAGGACCAAAAGACATGGACAGTTTTGGTCTCTCTCTATTTCAACCAGATTTTCTCATTTGTTCATTCTACAAAGTTTTTGGAGAAAATCCATCTGGTTTTGGTTGCCTTTTTGTCAAGAAATCTTCTATTTCCATTCTTGAATCCTCCACTTGTGCAGGAATTGTCAACCTTGTACCAGAAAGTACGCAATTTAATCTATCAGAAGATTATTCTTCGGGTAATAATCAAGTAGGAACTGGTCAAAAATCACCATCTATTTTACAAGAGCAGGAATTATCTGCTATGAGTTCTTTCTCTGGAAGGATGCAAACTCCACAATTTGTAAAAGTTGAAGCAGATCCAAAAGTTCCACAAGGTTCTGAAACTATGGAGGCAAAAAGGGTAGTTGAGAACAATCAAGTTAAGAATATGCAAGATAGTAAAAATGAGAGCTTTAACATTGAATGCAGGTGTTTGGATCAAGTGGACTCTTTAGGCTTGACACTGATAACCAACAGAGGAAGGTACCTTATAAATTGGCTTGTAAACTCATTGCTGAAGCTAAAACACCCTAATGATGAAGGGGTTCCCTTAGTCAAGATTTATGGTCCAAAGATAAGATTTGATAGAGGTCCTGCTTTAGCTTTCAATGTTTATGATTGGAAAGGTGAAAAAGTTGAGCCTGTTTTAGTACAGAAACTTGCTGATAGAAACAATATATCTCTTAGCTATGGATTTCTGCATCATATTTGGTTTGCAGATAAGTACTCAGAAGAGAAGGGAAGAGTTCTACAGACAAAAGAAGGAAGAGGAGAGAAAGTAATGGTGAATAAAAAGAAAGATAGAGATGATTTGGGAGTGACAGTGGTTACTGCTGCATTAAGCTTCTTGGCTAATTTTGAAGATGTGTATAAACTATGGACTTTTGTTGCTAGGTTCCTTGATGCAGATTTTGTGGAGAAGGAGAGGTGGAGGTACACTGCTCTTAATCAGAAAACAATTGAAGTTTAA
Protein sequence

>MS.gene34440.t1

MQTTLNQKPVSQGCCPTLLFIKSSQQSHNNSTTKPRNSSSQCRQTFASTSSSIFPNTKFTNHESLPSLHESFTEFIKVYPQFSETEKIDSLRAKEYYHLSFLNQSCLDYIGIGLFSYYQRQQHDASKTQFSSPSTSTPFQSPQQYSDIPFFSISYKTGNLKTLLLHGGKESEFESAMRKRIMKFLNISENDYFMVFTANRTSAFKLVADSYPFQSCKKLLTVYDYESEAVEAMISTSEKRGAKSMSAEFSWPRLRIQSTKLKKMIVNDNSKKKIKKKNGLFVFPLHSRVTGARYPYLWMRTAQENGWHVLIDACALGPKDMDSFGLSLFQPDFLICSFYKVFGENPSGFGCLFVKKSSISILESSTCAGIVNLVPESTQFNLSEDYSSGNNQVGTGQKSPSILQEQELSAMSSFSGRMQTPQFVKVEADPKVPQGSETMEAKRVVENNQVKNMQDSKNESFNIECRCLDQVDSLGLTLITNRGRYLINWLVNSLLKLKHPNDEGVPLVKIYGPKIRFDRGPALAFNVYDWKGEKVEPVLVQKLADRNNISLSYGFLHHIWFADKYSEEKGRVLQTKEGRGEKVMVNKKKDRDDLGVTVVTAALSFLANFEDVYKLWTFVARFLDADFVEKERWRYTALNQKTIEV