Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060125.t1 | XP_013458592.1 | 100 | 159 | 0 | 0 | 1 | 159 | 1 | 159 | 8.20E-86 | 326.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060125.t1 | Q945F4 | 100.0 | 159 | 0 | 0 | 1 | 159 | 1 | 159 | 2.0e-88 | 326.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060125.t1 | B7FGR9 | 100.0 | 159 | 0 | 0 | 1 | 159 | 1 | 159 | 5.9e-86 | 326.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052463 | MS.gene060125 | -0.800372 | 1.49E-48 | -1.69E-46 |
| MS.gene060122 | MS.gene060125 | 0.992272 | 2.65E-192 | -1.69E-46 |
| MS.gene060125 | MS.gene06052 | -0.811974 | 5.35E-51 | -1.69E-46 |
| MS.gene060125 | MS.gene065908 | -0.832949 | 7.06E-56 | -1.69E-46 |
| MS.gene060125 | MS.gene066127 | 0.810636 | 1.04E-50 | -1.69E-46 |
| MS.gene060125 | MS.gene067307 | -0.814799 | 1.28E-51 | -1.69E-46 |
| MS.gene060125 | MS.gene22419 | -0.801614 | 8.29E-49 | -1.69E-46 |
| MS.gene060125 | MS.gene24229 | -0.859899 | 3.00E-63 | -1.69E-46 |
| MS.gene060125 | MS.gene27006 | -0.869377 | 3.24E-66 | -1.69E-46 |
| MS.gene060125 | MS.gene27269 | -0.861646 | 8.86E-64 | -1.69E-46 |
| MS.gene060125 | MS.gene29361 | -0.801526 | 8.64E-49 | -1.69E-46 |
| MS.gene060125 | MS.gene34440 | -0.823895 | 1.08E-53 | -1.69E-46 |
| MS.gene060125 | MS.gene35129 | 0.812311 | 4.52E-51 | -1.69E-46 |
| MS.gene060125 | MS.gene36543 | 0.800047 | 1.73E-48 | -1.69E-46 |
| MS.gene060125 | MS.gene36993 | 0.807498 | 4.91E-50 | -1.69E-46 |
| MS.gene060125 | MS.gene37917 | -0.832873 | 7.37E-56 | -1.69E-46 |
| MS.gene060125 | MS.gene40872 | -0.814955 | 1.18E-51 | -1.69E-46 |
| MS.gene060125 | MS.gene41380 | -0.844618 | 6.76E-59 | -1.69E-46 |
| MS.gene060125 | MS.gene55778 | -0.813341 | 2.69E-51 | -1.69E-46 |
| MS.gene060125 | MS.gene58462 | 0.80742 | 5.10E-50 | -1.69E-46 |
| MS.gene060125 | MS.gene69007 | -0.802049 | 6.75E-49 | -1.69E-46 |
| MS.gene060125 | MS.gene73038 | -0.808158 | 3.55E-50 | -1.69E-46 |
| MS.gene060125 | MS.gene76730 | -0.802466 | 5.54E-49 | -1.69E-46 |
| MS.gene060125 | MS.gene87358 | -0.803241 | 3.83E-49 | -1.69E-46 |
| MS.gene060125 | MS.gene90231 | 0.815039 | 1.13E-51 | -1.69E-46 |
| MS.gene060125 | MS.gene90727 | -0.858228 | 9.51E-63 | -1.69E-46 |
| MS.gene060125 | MS.gene96598 | -0.819777 | 9.72E-53 | -1.69E-46 |
| MS.gene060125 | MS.gene99859 | -0.802254 | 6.12E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060125.t1 | MTR_4g130917 | 100.000 | 159 | 0 | 0 | 1 | 159 | 1 | 159 | 6.42e-117 | 327 |
| MS.gene060125.t1 | MTR_4g109130 | 93.711 | 159 | 10 | 0 | 1 | 159 | 1 | 159 | 3.42e-109 | 308 |
| MS.gene060125.t1 | MTR_3g437680 | 92.453 | 159 | 12 | 0 | 1 | 159 | 1 | 159 | 1.80e-108 | 306 |
| MS.gene060125.t1 | MTR_3g437680 | 92.453 | 159 | 12 | 0 | 1 | 159 | 1 | 159 | 1.80e-108 | 306 |
| MS.gene060125.t1 | MTR_5g042990 | 89.937 | 159 | 16 | 0 | 1 | 159 | 1 | 159 | 2.22e-106 | 300 |
| MS.gene060125.t1 | MTR_4g130917 | 99.213 | 127 | 1 | 0 | 1 | 127 | 1 | 127 | 4.30e-92 | 264 |
| MS.gene060125.t1 | MTR_5g042990 | 89.764 | 127 | 13 | 0 | 1 | 127 | 1 | 127 | 2.04e-83 | 242 |
| MS.gene060125.t1 | MTR_5g042990 | 84.058 | 138 | 22 | 0 | 1 | 138 | 1 | 138 | 3.82e-83 | 241 |
| MS.gene060125.t1 | MTR_4g109130 | 85.000 | 120 | 18 | 0 | 1 | 120 | 1 | 120 | 3.54e-70 | 207 |
| MS.gene060125.t1 | MTR_4g112440 | 68.627 | 102 | 22 | 1 | 1 | 102 | 1 | 92 | 4.02e-45 | 143 |
| MS.gene060125.t1 | MTR_4g130907 | 47.656 | 128 | 19 | 2 | 18 | 145 | 42 | 121 | 1.35e-26 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060125.t1 | AT1G13950 | 91.824 | 159 | 12 | 1 | 1 | 159 | 1 | 158 | 4.11e-105 | 297 |
| MS.gene060125.t1 | AT1G69410 | 86.792 | 159 | 20 | 1 | 1 | 159 | 1 | 158 | 8.89e-102 | 289 |
| MS.gene060125.t1 | AT1G26630 | 81.529 | 157 | 28 | 1 | 1 | 157 | 1 | 156 | 1.36e-93 | 268 |
| MS.gene060125.t1 | AT1G26630 | 84.252 | 127 | 19 | 1 | 1 | 127 | 1 | 126 | 6.66e-76 | 223 |
Find 32 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCTGTTGAGGGTAGGTTT+TGG | 0.330390 | 8.4:-3000468 | None:intergenic |
| AGGAAGCTTCAGATCATCTT+TGG | 0.330486 | 8.4:-3002443 | None:intergenic |
| ACTTAGGACCAATGTCCTTC+AGG | 0.343359 | 8.4:-3002652 | None:intergenic |
| TTGATTGATATTTCTGAAGA+TGG | 0.371340 | 8.4:+3001570 | MS.gene060125:CDS |
| GCAGAAAACCTTGCAAGGCC+TGG | 0.423629 | 8.4:-3000528 | None:intergenic |
| ATCCAAAACCTACCCTCAAC+AGG | 0.440341 | 8.4:+3000466 | MS.gene060125:CDS |
| ATACATTCATAGATTAAAGA+TGG | 0.442913 | 8.4:+3002563 | MS.gene060125:intron |
| GGATGCTCCGGCATCGGCAG+CGG | 0.446886 | 8.4:-3000447 | None:intergenic |
| GATGCTCCGGCATCGGCAGC+GGG | 0.447940 | 8.4:-3000446 | None:intergenic |
| TTTGAACCCGCTGCCGATGC+CGG | 0.456716 | 8.4:+3000440 | MS.gene060125:CDS |
| CTTAGGACCAATGTCCTTCA+GGG | 0.484561 | 8.4:-3002651 | None:intergenic |
| ATTAAAGATGGATTTGCTGA+TGG | 0.488295 | 8.4:+3002575 | MS.gene060125:CDS |
| GAATAGTACCAGCCTGTTGA+GGG | 0.502881 | 8.4:-3000478 | None:intergenic |
| GGTTTCTGTTATGTCTGCGA+TGG | 0.503255 | 8.4:+3002610 | MS.gene060125:CDS |
| ACATCACAATTGTGGGATGA+AGG | 0.511953 | 8.4:-3001440 | None:intergenic |
| CTAACTTACATCACAATTGT+GGG | 0.513530 | 8.4:-3001447 | None:intergenic |
| TCTAACTTACATCACAATTG+TGG | 0.519354 | 8.4:-3001448 | None:intergenic |
| CATCAAGTCCAGGCCTTGCA+AGG | 0.525229 | 8.4:+3000520 | MS.gene060125:CDS |
| GCTGGTACTATTCGCAAGAA+TGG | 0.527051 | 8.4:+3000488 | MS.gene060125:CDS |
| CGAATAGTACCAGCCTGTTG+AGG | 0.540601 | 8.4:-3000479 | None:intergenic |
| GTTTCTGTTATGTCTGCGAT+GGG | 0.555762 | 8.4:+3002611 | MS.gene060125:CDS |
| AAAACCTACCCTCAACAGGC+TGG | 0.584266 | 8.4:+3000470 | MS.gene060125:CDS |
| AGAGCAGATATGTGCCCTGA+AGG | 0.589389 | 8.4:+3002637 | MS.gene060125:CDS |
| TGCTGATGGAAAAGATCTCG+TGG | 0.593109 | 8.4:+3002589 | MS.gene060125:CDS |
| GAAAAGCAGAAAACCTTGCA+AGG | 0.593565 | 8.4:-3000533 | None:intergenic |
| ATATGTGCCCTGAAGGACAT+TGG | 0.593679 | 8.4:+3002644 | MS.gene060125:CDS |
| GTTACATAGTCATCAAGTCC+AGG | 0.598114 | 8.4:+3000510 | MS.gene060125:CDS |
| TGATGATTCACTACTTACTC+AGG | 0.602143 | 8.4:+3002468 | MS.gene060125:CDS |
| GTAAGTAGTGAATCATCAGT+AGG | 0.605999 | 8.4:-3002463 | None:intergenic |
| AGTACCAGCCTGTTGAGGGT+AGG | 0.611010 | 8.4:-3000474 | None:intergenic |
| GTGAGTTTGTTGACTGACAA+TGG | 0.614472 | 8.4:+3002415 | MS.gene060125:CDS |
| TAATCAGTACGATTCACATG+AGG | 0.718954 | 8.4:-3001543 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATTGAGAAACAAATA+CGG | - | chr8.4:3001311-3001330 | None:intergenic | 15.0% |
| !! | ATTAAGTTAAAACTTTCAAA+TGG | + | chr8.4:3001640-3001659 | MS.gene060125:intron | 15.0% |
| !!! | ATTTGTTTCTCAATATATTT+TGG | + | chr8.4:3001312-3001331 | MS.gene060125:intron | 15.0% |
| !!! | TTTGATTTGATTGTTTTAAA+CGG | + | chr8.4:3000768-3000787 | MS.gene060125:intron | 15.0% |
| !!! | TTTTATAAACTTGATATAAC+TGG | + | chr8.4:3001161-3001180 | MS.gene060125:intron | 15.0% |
| !!! | TTTTGAAACAATTTTAAAGA+TGG | + | chr8.4:3001099-3001118 | MS.gene060125:intron | 15.0% |
| !! | AAAAAATACAAATCTAGAAG+GGG | - | chr8.4:3000564-3000583 | None:intergenic | 20.0% |
| !! | AAAGAGACAAAATATATATG+TGG | - | chr8.4:3002528-3002547 | None:intergenic | 20.0% |
| !! | AAATATTATAGTCATTCCTT+TGG | - | chr8.4:3001863-3001882 | None:intergenic | 20.0% |
| !! | AAGTAAAAATAAGATGACAT+AGG | + | chr8.4:3002197-3002216 | MS.gene060125:intron | 20.0% |
| !! | AGTAAAAATAAGATGACATA+GGG | + | chr8.4:3002198-3002217 | MS.gene060125:intron | 20.0% |
| !! | ATAAAAATTGGAACATGATT+TGG | + | chr8.4:3000736-3000755 | MS.gene060125:intron | 20.0% |
| !! | ATACATTCATAGATTAAAGA+TGG | + | chr8.4:3002563-3002582 | MS.gene060125:intron | 20.0% |
| !! | CAAAAAATACAAATCTAGAA+GGG | - | chr8.4:3000565-3000584 | None:intergenic | 20.0% |
| !! | GGATATATAAAATGAGAATT+AGG | + | chr8.4:3001661-3001680 | MS.gene060125:intron | 20.0% |
| !! | GTTATCTTAATGTCTATTAA+GGG | + | chr8.4:3001712-3001731 | MS.gene060125:intron | 20.0% |
| !! | TAAAATTGTTTCAAAACCTA+GGG | - | chr8.4:3001095-3001114 | None:intergenic | 20.0% |
| !! | TCAAAAAATACAAATCTAGA+AGG | - | chr8.4:3000566-3000585 | None:intergenic | 20.0% |
| !! | TGTTATCTTAATGTCTATTA+AGG | + | chr8.4:3001711-3001730 | MS.gene060125:intron | 20.0% |
| !! | TGTTTGAATCGAATAAAAAT+TGG | + | chr8.4:3000724-3000743 | MS.gene060125:intron | 20.0% |
| !! | TTAAAATTGTTTCAAAACCT+AGG | - | chr8.4:3001096-3001115 | None:intergenic | 20.0% |
| !! | TTTAGTGTAATTATAAGTGT+CGG | + | chr8.4:3002091-3002110 | MS.gene060125:intron | 20.0% |
| !!! | ATAAAACATACTCAGTTTTT+AGG | - | chr8.4:3001756-3001775 | None:intergenic | 20.0% |
| !!! | GTCTCTTTAATTTGATTTAT+TGG | + | chr8.4:3002540-3002559 | MS.gene060125:intron | 20.0% |
| !!! | TTGCTATTGATATTTTCAAT+GGG | + | chr8.4:3001396-3001415 | MS.gene060125:CDS | 20.0% |
| !!! | TTTACATTATGTTTTATGTC+AGG | + | chr8.4:3001894-3001913 | MS.gene060125:intron | 20.0% |
| ! | AATTCCTTATTCGATTAATC+TGG | + | chr8.4:3000585-3000604 | MS.gene060125:intron | 25.0% |
| ! | GTTATATAGATGAGTTACAT+GGG | + | chr8.4:3001683-3001702 | MS.gene060125:intron | 25.0% |
| ! | TTAACATGCTTCTGTTTATA+TGG | + | chr8.4:3000671-3000690 | MS.gene060125:intron | 25.0% |
| ! | TTATATAGATGAGTTACATG+GGG | + | chr8.4:3001684-3001703 | MS.gene060125:intron | 25.0% |
| ! | TTCTTCATGTTAGGAAAATA+TGG | - | chr8.4:3001949-3001968 | None:intergenic | 25.0% |
| ! | TTTACATCTAGATCTAACAT+TGG | + | chr8.4:3000813-3000832 | MS.gene060125:intron | 25.0% |
| !! | AAGTTAATCTCTTTTCAACA+TGG | - | chr8.4:3000872-3000891 | None:intergenic | 25.0% |
| !! | ACTTGTTTGTATTCACATTT+TGG | - | chr8.4:3002312-3002331 | None:intergenic | 25.0% |
| !! | TATTTGACTTTCTTCATGTT+AGG | - | chr8.4:3001958-3001977 | None:intergenic | 25.0% |
| !! | TTCACAGTAAATTTTACCAA+AGG | + | chr8.4:3001844-3001863 | MS.gene060125:intron | 25.0% |
| !! | TTGATTGATATTTCTGAAGA+TGG | + | chr8.4:3001570-3001589 | MS.gene060125:CDS | 25.0% |
| !!! | AATTGTGCTAACTTGTTTAT+TGG | + | chr8.4:3001282-3001301 | MS.gene060125:intron | 25.0% |
| !!! | ATTGTGCTAACTTGTTTATT+GGG | + | chr8.4:3001283-3001302 | MS.gene060125:intron | 25.0% |
| !!! | GTTGCTATTGATATTTTCAA+TGG | + | chr8.4:3001395-3001414 | MS.gene060125:CDS | 25.0% |
| !!! | GTTTCTCAATATATTTTGGT+AGG | + | chr8.4:3001316-3001335 | MS.gene060125:intron | 25.0% |
| !!! | TGTTTATATGGTGTTGATTT+TGG | + | chr8.4:3000683-3000702 | MS.gene060125:intron | 25.0% |
| ACTTCAAAAACAGGAAAACA+TGG | + | chr8.4:3001353-3001372 | MS.gene060125:CDS | 30.0% | |
| AGTTTACAACTATGAAGCAT+GGG | - | chr8.4:3002141-3002160 | None:intergenic | 30.0% | |
| CCTAAACAAAACATTCATGT+AGG | - | chr8.4:3002396-3002415 | None:intergenic | 30.0% | |
| CTAACTTACATCACAATTGT+GGG | - | chr8.4:3001450-3001469 | None:intergenic | 30.0% | |
| GATTCCAGATTAATCGAATA+AGG | - | chr8.4:3000592-3000611 | None:intergenic | 30.0% | |
| GGTTATATAGATGAGTTACA+TGG | + | chr8.4:3001682-3001701 | MS.gene060125:intron | 30.0% | |
| TAATGTCTATTAAGGGATGA+GGG | + | chr8.4:3001719-3001738 | MS.gene060125:intron | 30.0% | |
| TAGTTGACATTCTTCATGTT+AGG | - | chr8.4:3001823-3001842 | None:intergenic | 30.0% | |
| TATATAGATGAGTTACATGG+GGG | + | chr8.4:3001685-3001704 | MS.gene060125:intron | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr8.4:3001069-3001088 | MS.gene060125:intron | 30.0% | |
| TCTAACTTACATCACAATTG+TGG | - | chr8.4:3001451-3001470 | None:intergenic | 30.0% | |
| TTAATGTCTATTAAGGGATG+AGG | + | chr8.4:3001718-3001737 | MS.gene060125:intron | 30.0% | |
| TTACTTGTGACAACTTTAGT+AGG | + | chr8.4:3001611-3001630 | MS.gene060125:intron | 30.0% | |
| TTCTTCATGTTAGGAAAACA+AGG | - | chr8.4:3001814-3001833 | None:intergenic | 30.0% | |
| !! | ATTAAAGATGGATTTGCTGA+TGG | + | chr8.4:3002575-3002594 | MS.gene060125:CDS | 30.0% |
| !!! | ATTTTGGTTGATTGGTAACT+GGG | + | chr8.4:3000699-3000718 | MS.gene060125:intron | 30.0% |
| !!! | CATTGGAATTTTAGTTTTGC+TGG | + | chr8.4:3001227-3001246 | MS.gene060125:intron | 30.0% |
| !!! | CCTACATGAATGTTTTGTTT+AGG | + | chr8.4:3002393-3002412 | MS.gene060125:intron | 30.0% |
| !!! | TATATTTTGGTAGGTTGTTG+AGG | + | chr8.4:3001325-3001344 | MS.gene060125:intron | 30.0% |
| ACAAGTGCACAACAAGAAAA+AGG | + | chr8.4:3002326-3002345 | MS.gene060125:intron | 35.0% | |
| ATACAAATCTAGAAGGGGAA+AGG | - | chr8.4:3000559-3000578 | None:intergenic | 35.0% | |
| CAAGTGCACAACAAGAAAAA+GGG | + | chr8.4:3002327-3002346 | MS.gene060125:intron | 35.0% | |
| GAGGTTTCTACTTCAAAAAC+AGG | + | chr8.4:3001344-3001363 | MS.gene060125:CDS | 35.0% | |
| GAGTTTACAACTATGAAGCA+TGG | - | chr8.4:3002142-3002161 | None:intergenic | 35.0% | |
| GTAAGTAGTGAATCATCAGT+AGG | - | chr8.4:3002466-3002485 | None:intergenic | 35.0% | |
| TAAACGGAGACATAGACATA+TGG | + | chr8.4:3000784-3000803 | MS.gene060125:intron | 35.0% | |
| TAATCAGTACGATTCACATG+AGG | - | chr8.4:3001546-3001565 | None:intergenic | 35.0% | |
| TACAAATCTAGAAGGGGAAA+GGG | - | chr8.4:3000558-3000577 | None:intergenic | 35.0% | |
| TCACTACTTACTCAGGTATT+GGG | + | chr8.4:3002475-3002494 | MS.gene060125:intron | 35.0% | |
| TGATGATTCACTACTTACTC+AGG | + | chr8.4:3002468-3002487 | MS.gene060125:CDS | 35.0% | |
| TTATGCTATTGTCATTGCAG+TGG | + | chr8.4:3002358-3002377 | MS.gene060125:intron | 35.0% | |
| TTCACTACTTACTCAGGTAT+TGG | + | chr8.4:3002474-3002493 | MS.gene060125:intron | 35.0% | |
| TTGTGACAACTTTAGTAGGT+GGG | + | chr8.4:3001615-3001634 | MS.gene060125:intron | 35.0% | |
| !!! | CATACTCAGTTTTTAGGACA+TGG | - | chr8.4:3001750-3001769 | None:intergenic | 35.0% |
| !!! | GATTTTGGTTGATTGGTAAC+TGG | + | chr8.4:3000698-3000717 | MS.gene060125:intron | 35.0% |
| !!! | TGGTGTTGATTTTGGTTGAT+TGG | + | chr8.4:3000691-3000710 | MS.gene060125:intron | 35.0% |
| ACATCACAATTGTGGGATGA+AGG | - | chr8.4:3001443-3001462 | None:intergenic | 40.0% | |
| AGGAAGCTTCAGATCATCTT+TGG | - | chr8.4:3002446-3002465 | None:intergenic | 40.0% | |
| ATCATCTTTGCTCTCTTTGC+AGG | + | chr8.4:3001518-3001537 | MS.gene060125:intron | 40.0% | |
| CCCTATAATCCTTGACAACA+GGG | + | chr8.4:3001203-3001222 | MS.gene060125:intron | 40.0% | |
| CCCTGTTGTCAAGGATTATA+GGG | - | chr8.4:3001206-3001225 | None:intergenic | 40.0% | |
| CTTGTGACAACTTTAGTAGG+TGG | + | chr8.4:3001614-3001633 | MS.gene060125:intron | 40.0% | |
| GAAAAGCAGAAAACCTTGCA+AGG | - | chr8.4:3000536-3000555 | None:intergenic | 40.0% | |
| GTTACATAGTCATCAAGTCC+AGG | + | chr8.4:3000510-3000529 | MS.gene060125:CDS | 40.0% | |
| GTTTCTGTTATGTCTGCGAT+GGG | + | chr8.4:3002611-3002630 | MS.gene060125:CDS | 40.0% | |
| TCCCTATAATCCTTGACAAC+AGG | + | chr8.4:3001202-3001221 | MS.gene060125:intron | 40.0% | |
| TCCCTGTTGTCAAGGATTAT+AGG | - | chr8.4:3001207-3001226 | None:intergenic | 40.0% | |
| TGCTGTAAACCTATGAAGCA+CGG | + | chr8.4:3002012-3002031 | MS.gene060125:intron | 40.0% | |
| !! | GTGAGTTTGTTGACTGACAA+TGG | + | chr8.4:3002415-3002434 | MS.gene060125:CDS | 40.0% |
| !! | TATAAGTGTCGGTGTTGTGT+CGG | + | chr8.4:3002102-3002121 | MS.gene060125:intron | 40.0% |
| ACTTAGGACCAATGTCCTTC+AGG | - | chr8.4:3002655-3002674 | None:intergenic | 45.0% | |
| ATATGTGCCCTGAAGGACAT+TGG | + | chr8.4:3002644-3002663 | MS.gene060125:CDS | 45.0% | |
| ATCCAAAACCTACCCTCAAC+AGG | + | chr8.4:3000466-3000485 | MS.gene060125:CDS | 45.0% | |
| ATCCTTGACAACAGGGACAT+TGG | + | chr8.4:3001210-3001229 | MS.gene060125:intron | 45.0% | |
| CGACATCGTTAGGATGAGTT+AGG | + | chr8.4:3001131-3001150 | MS.gene060125:intron | 45.0% | |
| CTTAGGACCAATGTCCTTCA+GGG | - | chr8.4:3002654-3002673 | None:intergenic | 45.0% | |
| GAATAGTACCAGCCTGTTGA+GGG | - | chr8.4:3000481-3000500 | None:intergenic | 45.0% | |
| GCTGGTACTATTCGCAAGAA+TGG | + | chr8.4:3000488-3000507 | MS.gene060125:CDS | 45.0% | |
| GGTTTCTGTTATGTCTGCGA+TGG | + | chr8.4:3002610-3002629 | MS.gene060125:CDS | 45.0% | |
| TGCTGATGGAAAAGATCTCG+TGG | + | chr8.4:3002589-3002608 | MS.gene060125:CDS | 45.0% | |
| TGTCTGTATCCGTGCTTCAT+AGG | - | chr8.4:3002024-3002043 | None:intergenic | 45.0% | |
| TTCAAAACCTAGGGCCTGTT+TGG | - | chr8.4:3001086-3001105 | None:intergenic | 45.0% | |
| TTCCAATGTCCCTGTTGTCA+AGG | - | chr8.4:3001215-3001234 | None:intergenic | 45.0% | |
| AAAACCTACCCTCAACAGGC+TGG | + | chr8.4:3000470-3000489 | MS.gene060125:CDS | 50.0% | |
| AGAGCAGATATGTGCCCTGA+AGG | + | chr8.4:3002637-3002656 | MS.gene060125:CDS | 50.0% | |
| AGTCAATCCAAACAGGCCCT+AGG | + | chr8.4:3001076-3001095 | MS.gene060125:intron | 50.0% | |
| CGAATAGTACCAGCCTGTTG+AGG | - | chr8.4:3000482-3000501 | None:intergenic | 50.0% | |
| GACACGTAGTCGACATCGTT+AGG | + | chr8.4:3001121-3001140 | MS.gene060125:intron | 50.0% | |
| TGAAGCACGGATACAGACAC+CGG | + | chr8.4:3002025-3002044 | MS.gene060125:intron | 50.0% | |
| ! | AGCCTGTTGAGGGTAGGTTT+TGG | - | chr8.4:3000471-3000490 | None:intergenic | 50.0% |
| !!! | AGGGTAGGTTTTGGATGCTC+CGG | - | chr8.4:3000462-3000481 | None:intergenic | 50.0% |
| ACGGATACAGACACCGGACA+CGG | + | chr8.4:3002031-3002050 | MS.gene060125:intron | 55.0% | |
| AGTACCAGCCTGTTGAGGGT+AGG | - | chr8.4:3000477-3000496 | None:intergenic | 55.0% | |
| CATCAAGTCCAGGCCTTGCA+AGG | + | chr8.4:3000520-3000539 | MS.gene060125:CDS | 55.0% | |
| GCAGAAAACCTTGCAAGGCC+TGG | - | chr8.4:3000531-3000550 | None:intergenic | 55.0% | |
| GTTATGCCAGTGTCCGTGTC+CGG | - | chr8.4:3002047-3002066 | None:intergenic | 55.0% | |
| !!! | GGTTTTGGATGCTCCGGCAT+CGG | - | chr8.4:3000456-3000475 | None:intergenic | 55.0% |
| TTTGAACCCGCTGCCGATGC+CGG | + | chr8.4:3000440-3000459 | MS.gene060125:CDS | 60.0% | |
| CAGACACCGGACACGGACAC+TGG | + | chr8.4:3002038-3002057 | MS.gene060125:intron | 65.0% | |
| !! | GATGCTCCGGCATCGGCAGC+GGG | - | chr8.4:3000449-3000468 | None:intergenic | 70.0% |
| !! | GGATGCTCCGGCATCGGCAG+CGG | - | chr8.4:3000450-3000469 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 3000419 | 3002676 | 3000419 | ID=MS.gene060125 |
| chr8.4 | mRNA | 3000419 | 3002676 | 3000419 | ID=MS.gene060125.t1;Parent=MS.gene060125 |
| chr8.4 | exon | 3000419 | 3000541 | 3000419 | ID=MS.gene060125.t1.exon1;Parent=MS.gene060125.t1 |
| chr8.4 | CDS | 3000419 | 3000541 | 3000419 | ID=cds.MS.gene060125.t1;Parent=MS.gene060125.t1 |
| chr8.4 | exon | 3001338 | 3001460 | 3001338 | ID=MS.gene060125.t1.exon2;Parent=MS.gene060125.t1 |
| chr8.4 | CDS | 3001338 | 3001460 | 3001338 | ID=cds.MS.gene060125.t1;Parent=MS.gene060125.t1 |
| chr8.4 | exon | 3001540 | 3001596 | 3001540 | ID=MS.gene060125.t1.exon3;Parent=MS.gene060125.t1 |
| chr8.4 | CDS | 3001540 | 3001596 | 3001540 | ID=cds.MS.gene060125.t1;Parent=MS.gene060125.t1 |
| chr8.4 | exon | 3002415 | 3002489 | 3002415 | ID=MS.gene060125.t1.exon4;Parent=MS.gene060125.t1 |
| chr8.4 | CDS | 3002415 | 3002489 | 3002415 | ID=cds.MS.gene060125.t1;Parent=MS.gene060125.t1 |
| chr8.4 | exon | 3002575 | 3002676 | 3002575 | ID=MS.gene060125.t1.exon5;Parent=MS.gene060125.t1 |
| chr8.4 | CDS | 3002575 | 3002676 | 3002575 | ID=cds.MS.gene060125.t1;Parent=MS.gene060125.t1 |
| Gene Sequence |
| Protein sequence |
